Citrus Sinensis ID: 011787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDKPIHI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccEEEEEEccccEEEEEccEEEEEccccccccccccccccEEEcccccccccccccEEEEEccccHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEEcccccEEEEEccEEEEEccccccccccccccccccccccccEEcccccccccccEEEEccccccccccccccHHHHHHHHHHccccccccccccccEEccccccccccccHHHHHHccccEEEEEccccccHHHcccccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccEEEEEEEEcccHHHHHHHHHHHHccccEEEEcccEcccHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHcEEccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcEEEEcccccEEEEcccccEEEEccccEEEcccEEEccccccccccccEEEHHHHccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHccEEEEEccEEEEEEEccccEEEEEEcccEEEEEEEcEEEEcccccEEEccccccHHHHcccEcccccEccccccEcccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccHHHccEEEccccEEEEEEccHHHHHHHcccEEEEEEEccccHHHHHccccccEEEEEEEccccEEEEEEEEEccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAMASLARRKAYVLSRnlsnssngnvfkySFSLtrgfasasdendvvvigggPGGYVAAIKAAQLGLKTTCIEkrgalggtclnvgcipskallhssHMYHEAMHSFashgvkfssvevdlpammAQKDKAVSNLTRGIEGLFKKNKVTYVKGYgkfispsevsvdtieggntvvKGKNIIIatgsdvkslpgitidekrivsstgalalnevpKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVdlsgdgvkltlepaaggektILEADVVLVsagrtpftaglgldkigvetdkmgripvnerfatnipgvyaigdvipgpmlahkaeEDGVACVEFLagkhghvdydkvpgvvythpevasvgktEEQVKELGVEYrvgkfpflansrakaiDDAEGIVKILAEKEtdkilgvhimapnagELIHEAAmathdkpihi
Flexible Loop (DISEMBL)
MAMASLARRKAYVlsrnlsnssngnVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSnltrgieglfkknkvTYVKGYGkfispsevsvdtIEGGNTVVKGKNIIiatgsdvkslpgiTIDEKRIVSStgalalnevpkKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAdivpsmdgeIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTlepaaggektiLEADVVLVSAGrtpftaglgldkigvetDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHpevasvgkteeqVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAmathdkpihi
Low Complexity Region (SEG)
MAMASLARRKAYVlsrnlsnssngnVFKYSFSLTRGFASASDENDvvvigggpggyvAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDKPIHI
Disordered region (IsUnstruct)
***********************GNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF******QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH*************
Disordered Region (DISOPRED)
**************************************SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDKPIHI
Disordered Region (DISEMBL)
MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDKPIHI
Disordered Region (DISPRO)
*****LAR*KAYVLSR******NGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDKPIHI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDKPIHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q9M5K3	507	Dihydrolipoyl dehydrogena	yes	no	0.997	0.938	0.822	0.0
Q9M5K2	507	Dihydrolipoyl dehydrogena	no	no	0.997	0.938	0.814	0.0
P31023	501	Dihydrolipoyl dehydrogena	N/A	no	0.985	0.938	0.812	0.0
O17953	495	Dihydrolipoyl dehydrogena	yes	no	0.911	0.878	0.579	1e-147
Q60HG3	509	Dihydrolipoyl dehydrogena	N/A	no	0.979	0.917	0.561	1e-145
P09622	509	Dihydrolipoyl dehydrogena	yes	no	0.979	0.917	0.561	1e-145
Q8CIZ7	509	Dihydrolipoyl dehydrogena	yes	no	0.979	0.917	0.557	1e-144
P09623	509	Dihydrolipoyl dehydrogena	yes	no	0.911	0.854	0.582	1e-143
Q5R4B1	509	Dihydrolipoyl dehydrogena	yes	no	0.979	0.917	0.555	1e-143
P49819	509	Dihydrolipoyl dehydrogena	yes	no	0.911	0.854	0.582	1e-143

>sp|Q9M5K3|DLDH1_ARATH Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/508 (82%), Positives = 455/508 (89%), Gaps = 32/508 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
           MAMASLARRKAY L+RNLSNS   +  ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAA
Sbjct: 1   MAMASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAA 59

Query: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
           IKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEV
Sbjct: 60  IKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEV 119

Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+
Sbjct: 120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKH 179

Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSE 239

Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE
Sbjct: 240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGE 299

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
           ++ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGP
Sbjct: 300 QSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGP 359

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGK 419

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--------------- 464
           FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIH               
Sbjct: 420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479

Query: 465 ---------------EAAMATHDKPIHI 477
                          EAAMAT+DKPIHI
Sbjct: 480 ARVCHAHPTMSEALKEAAMATYDKPIHI 507

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 4

>sp|Q9M5K2|DLDH2_ARATH Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/508 (81%), Positives = 450/508 (88%), Gaps = 32/508 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
           MAMASLARRKAY L+RN+SNS   + F++SFSLTRGFAS+ SD+NDVV+IGGGPGGYVAA
Sbjct: 1   MAMASLARRKAYFLTRNISNSPT-DAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAA 59

Query: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
           IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEV
Sbjct: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEV 119

Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           DLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYGKF+SPSEVSVDTI+G N VVKGK+
Sbjct: 120 DLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKH 179

Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSE 239

Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVVEFAADIVP+MDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKL +EPA GGE
Sbjct: 240 VTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE 299

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
           +T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGP 359

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGK 419

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--------------- 464
           FPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIH               
Sbjct: 420 FPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDI 479

Query: 465 ---------------EAAMATHDKPIHI 477
                          EAAMAT+DKPIH+
Sbjct: 480 ARVCHAHPTMSEAIKEAAMATYDKPIHM 507

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|P31023|DLDH_PEA Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/508 (81%), Positives = 448/508 (88%), Gaps = 38/508 (7%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSL-TRGFASASDENDVVVIGGGPGGYVAA 59
           MAMA+LARRK Y L   LS+ +     +YSFSL +R FAS SDENDVV+IGGGPGGYVAA
Sbjct: 1   MAMANLARRKGYSL---LSSET----LRYSFSLRSRAFASGSDENDVVIIGGGPGGYVAA 53

Query: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
           IKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVK S+VE+
Sbjct: 54  IKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 113

Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF+SPSE+SVDTIEG NTVVKGK+
Sbjct: 114 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKH 173

Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW R+GSE
Sbjct: 174 IIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE 233

Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLT+EP+AGGE
Sbjct: 234 VTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGE 293

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
           +TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 294 QTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 353

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGK
Sbjct: 354 MLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGK 413

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--------------- 464
           FPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAPNAGELIH               
Sbjct: 414 FPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDI 473

Query: 465 ---------------EAAMATHDKPIHI 477
                          EAAMAT+DKPIHI
Sbjct: 474 ARVCHAHPTMSEAIKEAAMATYDKPIHI 501

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|O17953|DLDH_CAEEL Dihydrolipoyl dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=dld-1 PE=2 SV=2

 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/438 (57%), Positives = 326/438 (74%), Gaps = 3/438 (0%)

Query: 33  LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
           L R +++  D  D+VVIGGGPGGYVAAIKAAQLG+KT C+EK   LGGTCLNVGCIPSKA
Sbjct: 20  LARNYSNTQDA-DLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKA 78

Query: 93  LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
           LL++SH  H A H FA+ G+  ++  ++LP MM  K  +V  LT GI+ LFK NKV +V+
Sbjct: 79  LLNNSHYLHMAQHDFAARGIDCTA-SLNLPKMMEAKSNSVKQLTGGIKQLFKANKVGHVE 137

Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
           G+   + P+ V     +G    +  +NI+IA+GS+V   PGITIDEK+IVSSTGAL+L +
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILIASGSEVTPFPGITIDEKQIVSSTGALSLGQ 197

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMK 271
           VPKK+VVIGAG IGLE+GSVW RLG+EVT VEF   +    +DGE+ K FQRSL KQ  K
Sbjct: 198 VPKKMVVIGAGVIGLELGSVWQRLGAEVTAVEFLGHVGGMGIDGEVSKNFQRSLTKQGFK 257

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
           F+L TKV+G   +G  + + +E A  G+K  LE D +LVS GR P+T GLGL  + ++ D
Sbjct: 258 FLLNTKVMGASQNGSTITVEVEGAKDGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLD 317

Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
             GR+PVNERF T +P ++AIGDVI GPMLAHKAE++G+ CVE +AG   H+DY+ VP V
Sbjct: 318 NRGRVPVNERFQTKVPSIFAIGDVIEGPMLAHKAEDEGILCVEGIAGGPVHIDYNCVPSV 377

Query: 392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
           VYTHPEVA VGK EEQ+K+ GV Y++GKFPF+ANSRAK  +D EG VK+LA+K+TD++LG
Sbjct: 378 VYTHPEVAWVGKAEEQLKQEGVAYKIGKFPFVANSRAKTNNDQEGFVKVLADKQTDRMLG 437

Query: 452 VHIMAPNAGELIHEAAMA 469
           VHI+ PNAGE+I EA +A
Sbjct: 438 VHIIGPNAGEMIAEATLA 455

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q60HG3|DLDH_MACFA Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1

 Score =  516 bits (1330), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/470 (56%), Positives = 333/470 (70%), Gaps = 3/470 (0%)

Query: 3   MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
           M S +R    +  R   N  +  +   S    R +A    + DV VIG GPGGYVAAIKA
Sbjct: 1   MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQLIDADVTVIGSGPGGYVAAIKA 60

Query: 63  AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
           AQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L
Sbjct: 61  AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
             MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+   ++GG  VV  KNI+
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVIHVNGYGKITGKNQVTATKVDGGTQVVDTKNIL 180

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240

Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
            VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 300

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           FPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 470

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|P09622|DLDH_HUMAN Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2

 Score =  516 bits (1329), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/470 (56%), Positives = 332/470 (70%), Gaps = 3/470 (0%)

Query: 3   MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
           M S +R    +  R   N  +  +   S    R +A    + DV VIG GPGGYVAAIKA
Sbjct: 1   MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60

Query: 63  AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
           AQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L
Sbjct: 61  AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
             MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +GG  V+  KNI+
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNIL 180

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240

Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
            VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 300

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           FPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 470

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8CIZ7|DLDH_CRIGR Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1

 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/470 (55%), Positives = 331/470 (70%), Gaps = 3/470 (0%)

Query: 3   MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
           M S +R    +  R   N  +  +   S    R +A    + DV VIG GPGGYVAAIKA
Sbjct: 1   MQSWSRVYCSLAKRGHFNRISHGLQGVSSVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60

Query: 63  AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
           AQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L
Sbjct: 61  AQLGFKTVCIEKNDTLGGTCLNVGCIPSKALLNNSHYYHLAHGRDFASRGIELSEVRLNL 120

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
             MM QK  AV  L  GI  LFK+NKV +V G+GK    ++V+    +G + V+  KNI+
Sbjct: 121 EKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSSQVIGTKNIL 180

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           IATGS+V   PGITIDE  IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVT 240

Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
            VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKRSDGKIDVSVEAASGGK 300

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           FPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 470

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Cricetulus griseus (taxid: 10029)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1

 Score =  510 bits (1313), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/438 (58%), Positives = 320/438 (73%), Gaps = 3/438 (0%)

Query: 35  RGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL 94
           R +A    + DV VIG GPGGYVAAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL
Sbjct: 33  RTYADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALL 92

Query: 95  HSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
           ++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV  V G
Sbjct: 93  NNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNG 152

Query: 154 YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV 213
           YGK    ++V+    +G   V+  KNI+IATGS+V   PGITIDE  +VSSTGAL+L +V
Sbjct: 153 YGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKV 212

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272
           P+K+VVIGAG IG+E+GSVW RLG++VT VE    +    +D E+ K FQR L+KQ  KF
Sbjct: 213 PEKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGFKF 272

Query: 273 MLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
            L TKV+G     DG + +++E A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D
Sbjct: 273 KLNTKVIGATKKSDGNIDVSIEAASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELD 332

Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
             GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V
Sbjct: 333 PRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSV 392

Query: 392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
           +YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG
Sbjct: 393 IYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLG 452

Query: 452 VHIMAPNAGELIHEAAMA 469
            HI+ P AGE+I+EAA+A
Sbjct: 453 AHIIGPGAGEMINEAALA 470

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|Q5R4B1|DLDH_PONAB Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1

 Score =  509 bits (1312), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/470 (55%), Positives = 330/470 (70%), Gaps = 3/470 (0%)

Query: 3   MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
           M S +R    +  R   N  +  +   S    R +A    + DV VIG GPGGYVAAIKA
Sbjct: 1   MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60

Query: 63  AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
           AQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L
Sbjct: 61  AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
             MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +GG  V+  KNI+
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNIL 180

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           IATGS+V   PGI IDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGIMIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240

Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
            VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 300

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           FPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AG +++EAA+A
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGGMVNEAALA 470

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

>sp|P49819|DLDH_CANFA Dihydrolipoyl dehydrogenase, mitochondrial OS=Canis familiaris GN=DLD PE=1 SV=1

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/438 (58%), Positives = 320/438 (73%), Gaps = 3/438 (0%)

Query: 35  RGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL 94
           R +A    + DV VIG GPGGYVAAIKAAQLG KT C+EK   LGGTCLNVGCIPSKALL
Sbjct: 33  RTYADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALL 92

Query: 95  HSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
           ++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV +V G
Sbjct: 93  NNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNG 152

Query: 154 YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV 213
           YGK    ++V+    +G   V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +V
Sbjct: 153 YGKITGKNQVTAKKADGSTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKV 212

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272
           P+K+VVIGAG IG+E+GSVW RLG++VT VEF   +    +D EI K FQR L+KQ  KF
Sbjct: 213 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKF 272

Query: 273 MLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
            L TKV G     DG + +++E A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D
Sbjct: 273 KLNTKVTGATKKSDGKIDVSIEGASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELD 332

Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
             GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG    +DY+ VP V
Sbjct: 333 PRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVPIDYNCVPSV 392

Query: 392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
           +YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG
Sbjct: 393 IYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLG 452

Query: 452 VHIMAPNAGELIHEAAMA 469
            HI+ P AGE+++EAA+A
Sbjct: 453 AHILGPGAGEMVNEAALA 470

Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction.

Canis familiaris (taxid: 9615)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
255556504	510	dihydrolipoamide dehydrogenase, putative	0.997	0.933	0.863	0.0
134142802	511	mitochondrial lipoamide dehydrogenase [P	1.0	0.933	0.843	0.0
211906492	509	dihydrolipoamide dehydrogenase [Gossypiu	0.997	0.935	0.856	0.0
224099079	511	precursor of dehydrogenase dihydrolipoam	1.0	0.933	0.845	0.0
118489203	511	unknown [Populus trichocarpa x Populus d	1.0	0.933	0.845	0.0
15221044	507	dihydrolipoyl dehydrogenase 1 [Arabidops	0.997	0.938	0.822	0.0
297852420	505	F21D18.28 [Arabidopsis lyrata subsp. lyr	0.993	0.938	0.826	0.0
8778521	505	F21D18.28 [Arabidopsis thaliana]	0.993	0.938	0.822	0.0
449459772	506	PREDICTED: dihydrolipoyl dehydrogenase 1	0.995	0.938	0.830	0.0
30684419	507	dihydrolipoyl dehydrogenase 2 [Arabidops	0.997	0.938	0.814	0.0

>gi|255556504|ref|XP_002519286.1| dihydrolipoamide dehydrogenase, putative [Ricinus communis] gi|223541601|gb|EEF43150.1| dihydrolipoamide dehydrogenase, putative [Ricinus communis]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/511 (86%), Positives = 463/511 (90%), Gaps = 35/511 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFASA-SDENDVVVIGGGPGGY 56
           MAMAS ARRKAY+L+RN SNSS  +  +YSFSLT   RGFASA SDENDVVV+GGGPGGY
Sbjct: 1   MAMASFARRKAYLLTRNFSNSSP-DALRYSFSLTSFSRGFASAGSDENDVVVVGGGPGGY 59

Query: 57  VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
           VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVKFSS
Sbjct: 60  VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAQHSFANHGVKFSS 119

Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           VEVDLPAMM QKDKAV+NLTRGIEGLFKKNKV YVKGYGKFISPSEVSVDT++GGNTVVK
Sbjct: 120 VEVDLPAMMGQKDKAVANLTRGIEGLFKKNKVNYVKGYGKFISPSEVSVDTLDGGNTVVK 179

Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           GKNIIIATGSDVKSLPGITIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 180 GKNIIIATGSDVKSLPGITIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRL 239

Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           GSEVTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 240 GSEVTVVEFAPDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLTLEPAS 299

Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GG++TILEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRIPVNE+FATN+PGV+AIGDV+
Sbjct: 300 GGDQTILEADVVLVSAGRTPFTAGLGLDKIGVETDKLGRIPVNEKFATNVPGVFAIGDVV 359

Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
           PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEYR
Sbjct: 360 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYR 419

Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH------------ 464
           VGKFPFLANSRAKAIDDAEG+VKILAEKETDKILGVHIMAPNAGELIH            
Sbjct: 420 VGKFPFLANSRAKAIDDAEGLVKILAEKETDKILGVHIMAPNAGELIHEAVLALAYGAAS 479

Query: 465 ------------------EAAMATHDKPIHI 477
                             EAAMATHDKPIHI
Sbjct: 480 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134142802|gb|ABO61735.1| mitochondrial lipoamide dehydrogenase [Populus tremuloides]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/511 (84%), Positives = 455/511 (89%), Gaps = 34/511 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFA-SASDENDVVVIGGGPGGY 56
           MAMAS+ARRKA  L+RNLSNSS+ + FK+S+SLT   RGFA S S+ENDVV+IGGGPGGY
Sbjct: 1   MAMASIARRKALFLTRNLSNSSSADAFKFSYSLTKFSRGFATSGSEENDVVIIGGGPGGY 60

Query: 57  VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
           VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHM+HEA HSFASHGVKFSS
Sbjct: 61  VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAQHSFASHGVKFSS 120

Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           VEVDLPAMMAQKDKAVS LTRGIEGL KKNKV YVKGYGKFISPSEVSVDT++G NTVVK
Sbjct: 121 VEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTVDGANTVVK 180

Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           GKNIIIATGSDVKSLPGITIDE++IVSSTGALAL ++PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 181 GKNIIIATGSDVKSLPGITIDEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRL 240

Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           GSEVTVVEFA DIVPSMDGE+RKQFQR LEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 241 GSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS 300

Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GG++T LEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRI VNERFATN+ GVYAIGDVI
Sbjct: 301 GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRISVNERFATNVSGVYAIGDVI 360

Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
           PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEY 
Sbjct: 361 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYC 420

Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH------------ 464
           VGKFP LANSRAKAIDDAEG+VKI+AEKETDKILGVHIMAPNAGELIH            
Sbjct: 421 VGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASS 480

Query: 465 ------------------EAAMATHDKPIHI 477
                             EAAMATHDKPIHI
Sbjct: 481 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 511

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211906492|gb|ACJ11739.1| dihydrolipoamide dehydrogenase [Gossypium hirsutum]

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/510 (85%), Positives = 457/510 (89%), Gaps = 34/510 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFASASDENDVVVIGGGPGGYV 57
           MA+ASL RRKAY+LSRNLSNS   +  KYSFSL+   RGFAS S+ENDVVVIGGGPGGYV
Sbjct: 1   MALASLVRRKAYLLSRNLSNSP-ADALKYSFSLSNFSRGFASGSEENDVVVIGGGPGGYV 59

Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA HSFA HGVKFSSV
Sbjct: 60  AAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEATHSFAGHGVKFSSV 119

Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           E+DLPAMMAQKDKAVSNLTRGIEGLFKKNKV YVKGYGKFISPSEVSVDTIEGG+TVVKG
Sbjct: 120 EIDLPAMMAQKDKAVSNLTRGIEGLFKKNKVNYVKGYGKFISPSEVSVDTIEGGSTVVKG 179

Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
           KNIIIATGSDVKSLPGITIDEKRIVSSTGALAL EVPKKL+VIGAGYIGLEMGSVW RLG
Sbjct: 180 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALQEVPKKLIVIGAGYIGLEMGSVWGRLG 239

Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
           SEVTVVEFA DIVPSMD EIRKQFQRSLEKQKMKFMLKTKVVGVD SG+GVKLT+EPAAG
Sbjct: 240 SEVTVVEFAPDIVPSMDAEIRKQFQRSLEKQKMKFMLKTKVVGVDTSGNGVKLTVEPAAG 299

Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
           G++T LEADVVLVSAGR+PFTAGLGLDKIGVETDK+GRI VN+RFATN+ GVYAIGDVIP
Sbjct: 300 GDQTTLEADVVLVSAGRSPFTAGLGLDKIGVETDKIGRILVNDRFATNVAGVYAIGDVIP 359

Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV 417
           GPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGV+YRV
Sbjct: 360 GPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVDYRV 419

Query: 418 GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH------------- 464
           GKFPFLANSRAKAIDDAEGIVKILA+KETDKILGVHIMAPNAGELIH             
Sbjct: 420 GKFPFLANSRAKAIDDAEGIVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSE 479

Query: 465 -----------------EAAMATHDKPIHI 477
                            EAAMAT+DKPIHI
Sbjct: 480 DIARVCHAHPTMSEALKEAAMATYDKPIHI 509

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099079|ref|XP_002311367.1| precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 [Populus trichocarpa] gi|222851187|gb|EEE88734.1| precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 [Populus trichocarpa]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/511 (84%), Positives = 454/511 (88%), Gaps = 34/511 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFA-SASDENDVVVIGGGPGGY 56
           MAMAS+ARRKA  L+RNLSNSS+ + FK+S+SLT   RGFA S S+ENDVVVIGGGPGGY
Sbjct: 1   MAMASIARRKACFLTRNLSNSSSADAFKFSYSLTKFSRGFATSGSEENDVVVIGGGPGGY 60

Query: 57  VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
           VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHM+HEA HSFASHGVKFSS
Sbjct: 61  VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAQHSFASHGVKFSS 120

Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           VEVDLPAMMAQKDKAVS LTRGIEGL KKNKV YVKGYGKFISPSEVSVDTI+G NTVVK
Sbjct: 121 VEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTIDGANTVVK 180

Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           GKNIIIATGSDVKSLPGITIDE++IVSSTGALAL ++PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 181 GKNIIIATGSDVKSLPGITIDEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRL 240

Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           GSEVTVVEFA DIVPSMDGE+RKQFQR LEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 241 GSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS 300

Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GG++T LEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRIPVNERF TN+ GVYAIGDVI
Sbjct: 301 GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRIPVNERFVTNVSGVYAIGDVI 360

Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
           PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEY 
Sbjct: 361 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYC 420

Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH------------ 464
           VGKFP LANSRAKAIDDAEG+VKI+AEKETDKILGVHIMAPNAGELIH            
Sbjct: 421 VGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASS 480

Query: 465 ------------------EAAMATHDKPIHI 477
                             EAAMATHDK IHI
Sbjct: 481 EDIARVCHAHPTMSEALKEAAMATHDKAIHI 511

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489203|gb|ABK96408.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/511 (84%), Positives = 455/511 (89%), Gaps = 34/511 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFA-SASDENDVVVIGGGPGGY 56
           MAMAS+ARRKA  L+RNLSNSS+ + FK+S+SLT   RGFA S S+ENDVVVIGGGPGGY
Sbjct: 1   MAMASIARRKACFLTRNLSNSSSADAFKFSYSLTKFSRGFATSGSEENDVVVIGGGPGGY 60

Query: 57  VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
           VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHM+HEA HSFASHGVKFSS
Sbjct: 61  VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAQHSFASHGVKFSS 120

Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           VEVDLPAMMAQKDKAVS LTRGIEGL KKNKV YVKGYGKFISPSEVSVDTI+G NTVVK
Sbjct: 121 VEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTIDGANTVVK 180

Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           GKNIIIATGSDVKSLPGITIDE++IVSSTGALAL ++PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 181 GKNIIIATGSDVKSLPGITIDEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRL 240

Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           GSEVTVVEFA DIVPSMDGE+RKQFQR LEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 241 GSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS 300

Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GG++T LEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRIPV+ERFATN+ GVYAIGDVI
Sbjct: 301 GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRIPVDERFATNVSGVYAIGDVI 360

Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
           PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEY 
Sbjct: 361 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYC 420

Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH------------ 464
           VGKFP LANSRAKAIDDAEG+VKI+AEKETDKILGVHIMAPNAGELIH            
Sbjct: 421 VGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASS 480

Query: 465 ------------------EAAMATHDKPIHI 477
                             EAAMATHDK IHI
Sbjct: 481 EDIARVCHAHPTMSEALKEAAMATHDKAIHI 511

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221044|ref|NP_175237.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] gi|30694221|ref|NP_849782.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] gi|75264759|sp|Q9M5K3.2|DLDH1_ARATH RecName: Full=Dihydrolipoyl dehydrogenase 1, mitochondrial; AltName: Full=Dihydrolipoamide dehydrogenase 1; AltName: Full=Glycine cleavage system L protein 1; AltName: Full=Pyruvate dehydrogenase complex E3 subunit 1; Short=E3-1; Short=PDC-E3 1; Flags: Precursor gi|12323085|gb|AAG51522.1|AC051631_2 lipoamide dehydrogenase, putative; 44693-46402 [Arabidopsis thaliana] gi|12704696|gb|AAF34795.3|AF228639_1 lipoamide dehydrogenase precursor [Arabidopsis thaliana] gi|332194118|gb|AEE32239.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] gi|332194119|gb|AEE32240.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/508 (82%), Positives = 455/508 (89%), Gaps = 32/508 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
           MAMASLARRKAY L+RNLSNS   +  ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAA
Sbjct: 1   MAMASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAA 59

Query: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
           IKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEV
Sbjct: 60  IKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEV 119

Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+
Sbjct: 120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKH 179

Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSE 239

Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE
Sbjct: 240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGE 299

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
           ++ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGP
Sbjct: 300 QSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGP 359

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGK 419

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--------------- 464
           FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIH               
Sbjct: 420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479

Query: 465 ---------------EAAMATHDKPIHI 477
                          EAAMAT+DKPIHI
Sbjct: 480 ARVCHAHPTMSEALKEAAMATYDKPIHI 507

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852420|ref|XP_002894091.1| F21D18.28 [Arabidopsis lyrata subsp. lyrata] gi|297339933|gb|EFH70350.1| F21D18.28 [Arabidopsis lyrata subsp. lyrata]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/506 (82%), Positives = 453/506 (89%), Gaps = 32/506 (6%)

Query: 3   MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAAIK 61
           MASLARRKAY L+RNLSNS   +  ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAAIK
Sbjct: 1   MASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAAIK 59

Query: 62  AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121
           AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H+FA+HG+K SSVEVDL
Sbjct: 60  AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHAFANHGIKVSSVEVDL 119

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
           PAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNTVVKGK+II
Sbjct: 120 PAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTVVKGKHII 179

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           +ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSEVT
Sbjct: 180 VATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVT 239

Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT 301
           VVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE+T
Sbjct: 240 VVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQT 299

Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
           ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF +N+PGVYAIGDVIPGPML
Sbjct: 300 ILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNERFLSNVPGVYAIGDVIPGPML 359

Query: 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP 421
           AHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGKFP
Sbjct: 360 AHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGKFP 419

Query: 422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH----------------- 464
           F+ANSRAKAID+AEG+VKILA+KETDKILGVHIM+PNAGELIH                 
Sbjct: 420 FMANSRAKAIDNAEGLVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIAR 479

Query: 465 -------------EAAMATHDKPIHI 477
                        EAAMAT+DKPIHI
Sbjct: 480 VCHAHPTMSEALKEAAMATYDKPIHI 505

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778521|gb|AAF79529.1|AC023673_17 F21D18.28 [Arabidopsis thaliana]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/506 (82%), Positives = 453/506 (89%), Gaps = 32/506 (6%)

Query: 3   MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAAIK 61
           MASLARRKAY L+RNLSNS   +  ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAAIK
Sbjct: 1   MASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAAIK 59

Query: 62  AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121
           A+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEVDL
Sbjct: 60  ASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEVDL 119

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
           PAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+II
Sbjct: 120 PAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHII 179

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           +ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSEVT
Sbjct: 180 VATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVT 239

Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT 301
           VVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE++
Sbjct: 240 VVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQS 299

Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
           ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGPML
Sbjct: 300 ILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGPML 359

Query: 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP 421
           AHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGKFP
Sbjct: 360 AHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGKFP 419

Query: 422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH----------------- 464
           F+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIH                 
Sbjct: 420 FMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR 479

Query: 465 -------------EAAMATHDKPIHI 477
                        EAAMAT+DKPIHI
Sbjct: 480 VCHAHPTMSEALKEAAMATYDKPIHI 505

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459772|ref|XP_004147620.1| PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial-like [Cucumis sativus] gi|449517359|ref|XP_004165713.1| PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial-like [Cucumis sativus]

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/508 (83%), Positives = 453/508 (89%), Gaps = 33/508 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
           MAMAS ARRKA+  SRN S+SS+ +V K +FS  RGFAS+ SDENDVVVIGGGPGGYVAA
Sbjct: 1   MAMASFARRKAFFFSRNASHSSSVDVLKLTFS--RGFASSGSDENDVVVIGGGPGGYVAA 58

Query: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
           IKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA H+FA+HGVKFSSVEV
Sbjct: 59  IKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKHAFANHGVKFSSVEV 118

Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           DLPAMMAQKDKAV+NLTRGIEGLFKKNKV YVKGYGK ISPSEVSVDTI+GGNTVVKGK+
Sbjct: 119 DLPAMMAQKDKAVANLTRGIEGLFKKNKVNYVKGYGKLISPSEVSVDTIDGGNTVVKGKS 178

Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           IIIATGSDVKSLPGITIDEKRI+SSTGALAL E+PKKLVVIGAGYIGLEMGSVW RLGSE
Sbjct: 179 IIIATGSDVKSLPGITIDEKRIISSTGALALTEIPKKLVVIGAGYIGLEMGSVWGRLGSE 238

Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVVEFA++IVP+MD E+RKQFQRSLEKQ MKF LKTKVVGVD SG+GVKLTLEPAAGG+
Sbjct: 239 VTVVEFASEIVPTMDAEVRKQFQRSLEKQGMKFKLKTKVVGVDTSGNGVKLTLEPAAGGD 298

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
           +T LE DVVLVSAGRTPFT+GLGL+K+GVETDK+GRI VN+RFATN+PG+YAIGDVIPGP
Sbjct: 299 QTTLETDVVLVSAGRTPFTSGLGLEKLGVETDKIGRILVNDRFATNVPGIYAIGDVIPGP 358

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAEEDGVACVEFLAGK GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGV YRVGK
Sbjct: 359 MLAHKAEEDGVACVEFLAGKTGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVAYRVGK 418

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--------------- 464
           FPF+ANSRAKAID+AEGIVKILAEKETDKILGVHIMAPNAGE+IH               
Sbjct: 419 FPFMANSRAKAIDNAEGIVKILAEKETDKILGVHIMAPNAGEMIHEAAIALQYDASSEDI 478

Query: 465 ---------------EAAMATHDKPIHI 477
                          EAAMAT+DKPIHI
Sbjct: 479 ARVCHAHPTMSEALKEAAMATYDKPIHI 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684419|ref|NP_851005.1| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gi|30684428|ref|NP_566570.3| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gi|75264758|sp|Q9M5K2.1|DLDH2_ARATH RecName: Full=Dihydrolipoyl dehydrogenase 2, mitochondrial; AltName: Full=Dihydrolipoamide dehydrogenase 2; AltName: Full=Glycine cleavage system L protein 2; AltName: Full=Pyruvate dehydrogenase complex E3 subunit 2; Short=E3-2; Short=PDC-E3 2; Flags: Precursor gi|6984216|gb|AAF34796.1|AF228640_1 lipoamide dehydrogenase precursor [Arabidopsis thaliana] gi|332642404|gb|AEE75925.1| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gi|332642406|gb|AEE75927.1| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana]

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/508 (81%), Positives = 450/508 (88%), Gaps = 32/508 (6%)

Query: 1   MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
           MAMASLARRKAY L+RN+SNS   + F++SFSLTRGFAS+ SD+NDVV+IGGGPGGYVAA
Sbjct: 1   MAMASLARRKAYFLTRNISNSPT-DAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAA 59

Query: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
           IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEV
Sbjct: 60  IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEV 119

Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           DLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYGKF+SPSEVSVDTI+G N VVKGK+
Sbjct: 120 DLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKH 179

Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSE 239

Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVVEFAADIVP+MDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKL +EPA GGE
Sbjct: 240 VTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE 299

Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
           +T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGP 359

Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
           MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGK 419

Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--------------- 464
           FPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIH               
Sbjct: 420 FPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDI 479

Query: 465 ---------------EAAMATHDKPIHI 477
                          EAAMAT+DKPIH+
Sbjct: 480 ARVCHAHPTMSEAIKEAAMATYDKPIHM 507

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2089030	507	mtLPD2 "lipoamide dehydrogenas	0.981	0.923	0.827	3.6e-209
TAIR|locus:2023782	507	mtLPD1 "mitochondrial lipoamid	0.981	0.923	0.831	9.8e-206
UNIPROTKB|P31023	501	LPD "Dihydrolipoyl dehydrogena	0.968	0.922	0.831	1e-203
UNIPROTKB|Q9SPB1	523	flbr "Dihydrolipoyl dehydrogen	0.968	0.883	0.840	4.4e-203
DICTYBASE|DDB_G0291648	488	lpd "glycine cleavage system L	0.863	0.844	0.601	9.5e-135
WB|WBGene00010794	495	dld-1 [Caenorhabditis elegans	0.911	0.878	0.554	5.9e-128
UNIPROTKB|P09622	509	DLD "Dihydrolipoyl dehydrogena	0.863	0.809	0.590	7.6e-128
UNIPROTKB|F1N206	509	DLD "Dihydrolipoyl dehydrogena	0.863	0.809	0.587	2e-127
UNIPROTKB|F1SAF0	509	DLD "Dihydrolipoyl dehydrogena	0.863	0.809	0.585	4.2e-127
UNIPROTKB|F1PAR0	509	DLD "Dihydrolipoyl dehydrogena	0.863	0.809	0.585	1.1e-126

TAIR|locus:2089030 mtLPD2 "lipoamide dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1966 (697.1 bits), Expect = 3.6e-209, Sum P(2) = 3.6e-209
 Identities = 389/470 (82%), Positives = 420/470 (89%)

Query:     1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASA-SDENDXXXXXXXXXXXXAA 59
             MAMASLARRKAY              F++SFSLTRGFAS+ SD+ND            AA
Sbjct:     1 MAMASLARRKAYFLTRNISNSPTDA-FRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAA 59

Query:    60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
             IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEV
Sbjct:    60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEV 119

Query:   120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
             DLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYGKF+SPSEVSVDTI+G N VVKGK+
Sbjct:   120 DLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKH 179

Query:   180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
             II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct:   180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSE 239

Query:   240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
             VTVVEFAADIVP+MDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKL +EPA GGE
Sbjct:   240 VTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE 299

Query:   300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             +T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct:   300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGP 359

Query:   360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
             MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGK
Sbjct:   360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGK 419

Query:   420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             FPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIHEA +A
Sbjct:   420 FPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLA 469

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005524 "ATP binding" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2023782 mtLPD1 "mitochondrial lipoamide dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1990 (705.6 bits), Expect = 9.8e-206, P = 9.8e-206
 Identities = 391/470 (83%), Positives = 426/470 (90%)

Query:     1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASA-SDENDXXXXXXXXXXXXAA 59
             MAMASLARRKAY             + ++SFSL+RGFAS+ SDEND            AA
Sbjct:     1 MAMASLARRKAYFLTRNLSNSPTDAL-RFSFSLSRGFASSGSDENDVVIIGGGPGGYVAA 59

Query:    60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
             IKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEV
Sbjct:    60 IKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEV 119

Query:   120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
             DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+
Sbjct:   120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKH 179

Query:   180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
             II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct:   180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSE 239

Query:   240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
             VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE
Sbjct:   240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGE 299

Query:   300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             ++ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGP
Sbjct:   300 QSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGP 359

Query:   360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
             MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct:   360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGK 419

Query:   420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIHEA +A
Sbjct:   420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLA 469

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005524 "ATP binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P31023 LPD "Dihydrolipoyl dehydrogenase, mitochondrial" [Pisum sativum (taxid:3888)]

 Score = 1971 (698.9 bits), Expect = 1.0e-203, P = 1.0e-203
 Identities = 391/470 (83%), Positives = 423/470 (90%)

Query:     1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSL-TRGFASASDENDXXXXXXXXXXXXAA 59
             MAMA+LARRK Y               +YSFSL +R FAS SDEND            AA
Sbjct:     1 MAMANLARRKGY-------SLLSSETLRYSFSLRSRAFASGSDENDVVIIGGGPGGYVAA 53

Query:    60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
             IKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVK S+VE+
Sbjct:    54 IKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 113

Query:   120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
             DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF+SPSE+SVDTIEG NTVVKGK+
Sbjct:   114 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKH 173

Query:   180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
             IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW R+GSE
Sbjct:   174 IIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE 233

Query:   240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
             VTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLT+EP+AGGE
Sbjct:   234 VTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGE 293

Query:   300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             +TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct:   294 QTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 353

Query:   360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
             MLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGK
Sbjct:   354 MLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGK 413

Query:   420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             FPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAPNAGELIHEAA+A
Sbjct:   414 FPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIA 463

GO:0005960 "glycine cleavage complex" evidence=IDA

UNIPROTKB|Q9SPB1 flbr "Dihydrolipoyl dehydrogenase" [Vigna unguiculata (taxid:3917)]

 Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
 Identities = 394/469 (84%), Positives = 416/469 (88%)

Query:     1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASASDENDXXXXXXXXXXXXAAI 60
             MAMASLARRKAY             VF  S    RGFAS SDEND            AAI
Sbjct:     1 MAMASLARRKAYAVVSSSRSS----VFLTSL---RGFASGSDENDVVVIGGGPGGYVAAI 53

Query:    61 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120
             KA+QLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEVD
Sbjct:    54 KASQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKLSSVEVD 113

Query:   121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNI 180
             L  MMAQKDKAVSNLT+GIEGLFKKNKV YVKGYGKF+SPSEVSVDTI+GGNTVVKGK+I
Sbjct:   114 LAGMMAQKDKAVSNLTKGIEGLFKKNKVNYVKGYGKFVSPSEVSVDTIDGGNTVVKGKHI 173

Query:   181 IIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEV 240
             IIATGSDVKSLPG+TIDEK+IVSSTGALAL E+PKKLVVIGAGYIGLEMGSVW RLGSEV
Sbjct:   174 IIATGSDVKSLPGVTIDEKKIVSSTGALALTEIPKKLVVIGAGYIGLEMGSVWGRLGSEV 233

Query:   241 TVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK 300
             TVVEFA+DIVP+MD E+RKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLTLEPAAGG++
Sbjct:   234 TVVEFASDIVPTMDAEVRKQFQRSLEKQGMKFQLKTKVVGVDTSGDGVKLTLEPAAGGDQ 293

Query:   301 TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360
             TILE DVVLVSAGRTPFTAGLGLDKIGVETDK+ RI VNERF TN+ GVYAIGDVIPGPM
Sbjct:   294 TILETDVVLVSAGRTPFTAGLGLDKIGVETDKIRRILVNERFTTNVSGVYAIGDVIPGPM 353

Query:   361 LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF 420
             LAHKAEEDGVACVEF+AGK GHVDYDKVPGVVYT PEVA VGKTEEQVK LGVEYRVGKF
Sbjct:   354 LAHKAEEDGVACVEFIAGKVGHVDYDKVPGVVYTTPEVAYVGKTEEQVKALGVEYRVGKF 413

Query:   421 PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             PF+ANSRAKAID+AEG+VKILAEKETDKILGVHIMAPNAGELIHEAA+A
Sbjct:   414 PFMANSRAKAIDNAEGLVKILAEKETDKILGVHIMAPNAGELIHEAAIA 462

GO:0015043 "leghemoglobin reductase activity" evidence=IDA

DICTYBASE|DDB_G0291648 lpd "glycine cleavage system L-protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 1280 (455.6 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
 Identities = 249/414 (60%), Positives = 308/414 (74%)

Query:    58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
             A IKA QLG+K T +EKRG LGGTCLNVGCIPSKALL++SH+Y EA    + +GVK S V
Sbjct:    37 AGIKAGQLGMKVTVVEKRGKLGGTCLNVGCIPSKALLNASHLYEEATTKMSKYGVKCSGV 96

Query:   118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
             E+DL AMM  KDK+VS LT GIEGLFKKNKV Y KG+GK   P+ V V   +G    ++ 
Sbjct:    97 ELDLGAMMQYKDKSVSGLTSGIEGLFKKNKVKYDKGFGKITGPNTVEVTLNDGSVKTIET 156

Query:   178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
             KNI+IATGS+V SLP + IDE+ I+SSTGALAL  VPKKL+VIG G IGLE+GSVW+RLG
Sbjct:   157 KNIVIATGSEVTSLPNVNIDEESIISSTGALALKSVPKKLIVIGGGVIGLELGSVWSRLG 216

Query:   238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPA- 295
             SE TVVEF   I    DGE+ K+FQ+SLEKQ MKF L+TKV  V    DG V +T+E   
Sbjct:   217 SETTVVEFTNRIAAGADGEVAKKFQKSLEKQHMKFHLETKVTSVVKKSDGKVTVTVEQVG 276

Query:   296 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
             AGG    LEAD VLVS GR P T+GLGL+ +G+ TDK GR+ V + F T +P ++AIGD 
Sbjct:   277 AGGFTGTLEADAVLVSVGRRPNTSGLGLESVGIPTDKAGRVEVGDHFNTKVPSIFAIGDA 336

Query:   356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEY 415
             I GPMLAHKAEE+G+A +E +    GHV+Y  +P ++YTHPEVA VGKTEE++++ G++Y
Sbjct:   337 IRGPMLAHKAEEEGIAIIEQIHNGGGHVNYGAIPSIIYTHPEVAWVGKTEEELQKEGIQY 396

Query:   416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
              +G+FPF+ANSRAK  DD EG VK LA K++D++LG HIM  NAGELI E  +A
Sbjct:   397 NIGRFPFVANSRAKTNDDVEGFVKFLAAKDSDRVLGAHIMGTNAGELIGECVLA 450

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0006574 "valine catabolic process" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

GO:0006552 "leucine catabolic process" evidence=ISS

GO:0006550 "isoleucine catabolic process" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA;ISS

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00010794 dld-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 243/438 (55%), Positives = 314/438 (71%)

Query:    33 LTRGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
             L R +++  D  D            AAIKAAQLG+KT C+EK   LGGTCLNVGCIPSKA
Sbjct:    20 LARNYSNTQDA-DLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKA 78

Query:    93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
             LL++SH  H A H FA+ G+  ++  ++LP MM  K  +V  LT GI+ LFK NKV +V+
Sbjct:    79 LLNNSHYLHMAQHDFAARGIDCTA-SLNLPKMMEAKSNSVKQLTGGIKQLFKANKVGHVE 137

Query:   153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
             G+   + P+ V     +G    +  +NI+IA+GS+V   PGITIDEK+IVSSTGAL+L +
Sbjct:   138 GFATIVGPNTVQAKKNDGSVETINARNILIASGSEVTPFPGITIDEKQIVSSTGALSLGQ 197

Query:   213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMK 271
             VPKK+VVIGAG IGLE+GSVW RLG+EVT VEF   +    +DGE+ K FQRSL KQ  K
Sbjct:   198 VPKKMVVIGAGVIGLELGSVWQRLGAEVTAVEFLGHVGGMGIDGEVSKNFQRSLTKQGFK 257

Query:   272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
             F+L TKV+G   +G  + + +E A  G+K  LE D +LVS GR P+T GLGL  + ++ D
Sbjct:   258 FLLNTKVMGASQNGSTITVEVEGAKDGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLD 317

Query:   332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
               GR+PVNERF T +P ++AIGDVI GPMLAHKAE++G+ CVE +AG   H+DY+ VP V
Sbjct:   318 NRGRVPVNERFQTKVPSIFAIGDVIEGPMLAHKAEDEGILCVEGIAGGPVHIDYNCVPSV 377

Query:   392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
             VYTHPEVA VGK EEQ+K+ GV Y++GKFPF+ANSRAK  +D EG VK+LA+K+TD++LG
Sbjct:   378 VYTHPEVAWVGKAEEQLKQEGVAYKIGKFPFVANSRAKTNNDQEGFVKVLADKQTDRMLG 437

Query:   452 VHIMAPNAGELIHEAAMA 469
             VHI+ PNAGE+I EA +A
Sbjct:   438 VHIIGPNAGEMIAEATLA 455

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

UNIPROTKB|P09622 DLD "Dihydrolipoyl dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 245/415 (59%), Positives = 307/415 (73%)

Query:    58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
             AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S 
Sbjct:    56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 115

Query:   117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
             V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +GG  V+ 
Sbjct:   116 VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVID 175

Query:   177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
              KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct:   176 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 235

Query:   237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
             G++VT VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E 
Sbjct:   236 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 295

Query:   295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
             A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct:   296 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 355

Query:   355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
             V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct:   356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415

Query:   415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct:   416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 470

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0048240 "sperm capacitation" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0006554 "lysine catabolic process" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1N206 DLD "Dihydrolipoyl dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 244/415 (58%), Positives = 306/415 (73%)

Query:    58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
             AAIKAAQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S 
Sbjct:    56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHFYHLAHGKDFASRGIEMSE 115

Query:   117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
             V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +G   V+ 
Sbjct:   116 VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGSTQVID 175

Query:   177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
              KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW RL
Sbjct:   176 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRL 235

Query:   237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
             G++VT VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E 
Sbjct:   236 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 295

Query:   295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
             A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct:   296 ASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDTRGRIPVNTRFQTKIPNIYAIGD 355

Query:   355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
             V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct:   356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415

Query:   415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct:   416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 470

GO:0048240 "sperm capacitation" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1SAF0 DLD "Dihydrolipoyl dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 243/415 (58%), Positives = 306/415 (73%)

Query:    58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
             AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S 
Sbjct:    56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 115

Query:   117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
             V ++L  MM QK  AV  LT GI  LFK+NKV  V GYGK    ++V+    +G   V+ 
Sbjct:   116 VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVIN 175

Query:   177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
              KNI+IATGS+V   PGITIDE  +VSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct:   176 TKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 235

Query:   237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
             G++VT VEF   +    +D E+ K FQR L+KQ  KF L TKV+G     DG + +++E 
Sbjct:   236 GADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFKLNTKVIGATKKSDGNIDVSIEA 295

Query:   295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
             A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct:   296 ASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 355

Query:   355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
             V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct:   356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415

Query:   415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+I+EAA+A
Sbjct:   416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHIIGPGAGEMINEAALA 470

GO:0048240 "sperm capacitation" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1PAR0 DLD "Dihydrolipoyl dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 243/415 (58%), Positives = 305/415 (73%)

Query:    58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
             AAIKAAQLG KT C+EK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S 
Sbjct:    56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 115

Query:   117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
             V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +G   V+ 
Sbjct:   116 VRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVID 175

Query:   177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
              KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct:   176 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 235

Query:   237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
             G++VT VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + + +E 
Sbjct:   236 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVFIEG 295

Query:   295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
             A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct:   296 ASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 355

Query:   355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
             V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct:   356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415

Query:   415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct:   416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 470

GO:0048240 "sperm capacitation" evidence=IEA

GO:0043159 "acrosomal matrix" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004148 "dihydrolipoyl dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GHY9	DLDH_STAAR	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
Q9HN74	DLDH_HALSA	1, ., 8, ., 1, ., 4	0.3930	0.8805	0.8860	yes	no
P52992	DLDH_CUPNH	1, ., 8, ., 1, ., 4	0.4988	0.9035	0.9092	yes	no
O18480	DLDH_MANSE	1, ., 8, ., 1, ., 4	0.5487	0.9098	0.8732	N/A	no
P0A9P3	DLDH_SHIFL	1, ., 8, ., 1, ., 4	0.4285	0.8888	0.8945	yes	no
Q9KPF6	DLDH_VIBCH	1, ., 8, ., 1, ., 4	0.4285	0.8742	0.8778	yes	no
O50286	DLDH_VIBPA	1, ., 8, ., 1, ., 4	0.4426	0.8742	0.8778	yes	no
O00087	DLDH_SCHPO	1, ., 8, ., 1, ., 4	0.5658	0.9056	0.8454	yes	no
P57303	DLDH_BUCAI	1, ., 8, ., 1, ., 4	0.3938	0.8805	0.8879	yes	no
P09623	DLDH_PIG	1, ., 8, ., 1, ., 4	0.5821	0.9119	0.8546	yes	no
P09622	DLDH_HUMAN	1, ., 8, ., 1, ., 4	0.5617	0.9790	0.9174	yes	no
P99084	DLDH_STAAN	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
P09624	DLDH_YEAST	1, ., 8, ., 1, ., 4	0.5442	0.9245	0.8837	yes	no
Q5UWH2	DLDH3_HALMA	1, ., 8, ., 1, ., 4	0.4219	0.8825	0.8825	yes	no
P0A0E6	DLDH_STAAM	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
P0A0E7	DLDH_STAAW	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
Q9PJI3	DLDH_CHLMU	1, ., 8, ., 1, ., 4	0.4083	0.8784	0.9010	yes	no
Q9Z773	DLDH_CHLPN	1, ., 8, ., 1, ., 4	0.3879	0.8846	0.9154	yes	no
Q54EW8	DLDH_DICDI	1, ., 8, ., 1, ., 4	0.5663	0.8805	0.8606	yes	no
O84561	DLDH_CHLTR	1, ., 8, ., 1, ., 4	0.4143	0.8763	0.8989	yes	no
P0A0E8	DLDH_STAAU	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
O08749	DLDH_MOUSE	1, ., 8, ., 1, ., 4	0.5753	0.9119	0.8546	yes	no
P49819	DLDH_CANFA	1, ., 8, ., 1, ., 4	0.5821	0.9119	0.8546	yes	no
Q8CIZ7	DLDH_CRIGR	1, ., 8, ., 1, ., 4	0.5574	0.9790	0.9174	yes	no
Q9M5K3	DLDH1_ARATH	1, ., 8, ., 1, ., 4	0.8228	0.9979	0.9388	yes	no
Q9M5K2	DLDH2_ARATH	1, ., 8, ., 1, ., 4	0.8149	0.9979	0.9388	no	no
O17953	DLDH_CAEEL	1, ., 8, ., 1, ., 4	0.5799	0.9119	0.8787	yes	no
Q60HG3	DLDH_MACFA	1, ., 8, ., 1, ., 4	0.5617	0.9790	0.9174	N/A	no
Q04933	DLDH_TRYBB	1, ., 8, ., 1, ., 4	0.5673	0.8637	0.8601	N/A	no
P43784	DLDH_HAEIN	1, ., 8, ., 1, ., 4	0.4309	0.8867	0.8849	yes	no
P31046	DLDH3_PSEPU	1, ., 8, ., 1, ., 4	0.5492	0.8867	0.9077	yes	no
Q6P6R2	DLDH_RAT	1, ., 8, ., 1, ., 4	0.5844	0.9119	0.8546	yes	no
P18925	DLDH_AZOVI	1, ., 8, ., 1, ., 4	0.4873	0.8951	0.8951	yes	no
P31023	DLDH_PEA	1, ., 8, ., 1, ., 4	0.8129	0.9853	0.9381	N/A	no
P90597	DLDH_TRYCR	1, ., 8, ., 1, ., 4	0.5710	0.8616	0.8616	N/A	no
P0A9P1	DLDH_ECOL6	1, ., 8, ., 1, ., 4	0.4285	0.8888	0.8945	yes	no
Q9HUY1	DLDH3_PSEAE	1, ., 8, ., 1, ., 4	0.5164	0.8867	0.9057	yes	no
Q6GAB8	DLDH_STAAS	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
Q5R4B1	DLDH_PONAB	1, ., 8, ., 1, ., 4	0.5553	0.9790	0.9174	yes	no
Q811C4	DLDH_MESAU	1, ., 8, ., 1, ., 4	0.5844	0.9119	0.9081	N/A	no
Q5HGY8	DLDH_STAAC	1, ., 8, ., 1, ., 4	0.4449	0.8825	0.8995	yes	no
P21880	DLDH1_BACSU	1, ., 8, ., 1, ., 4	0.4345	0.8825	0.8957	yes	no
P95596	DLDH_RHOCA	1, ., 8, ., 1, ., 4	0.5528	0.8364	0.8788	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.1.4	0.994
3rd Layer	1.8.1	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	0.0
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.0
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	0.0
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	0.0
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	0.0
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	0.0
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	1e-180
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	1e-155
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	1e-117
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	1e-116
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-111
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	1e-109
TIGR02053	463	TIGR02053, MerA, mercuric reductase	1e-108
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	1e-81
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	2e-73
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	1e-72
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-70
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	3e-68
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	1e-67
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	1e-67
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	5e-67
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	1e-65
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	9e-60
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-58
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	2e-58
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	7e-56
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	8e-56
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-53
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	1e-47
PLN02546	558	PLN02546, PLN02546, glutathione reductase	6e-43
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	7e-40
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	4e-38
pfam02852	110	pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu	1e-34
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	2e-23
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	7e-22
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-20
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	1e-20
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	8e-19
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	8e-16
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	3e-15
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-14
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	3e-14
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	5e-14
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	3e-13
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	3e-13
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	4e-13
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	7e-13
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-12
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-11
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	2e-11
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	2e-10
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	3e-10
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	8e-10
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	3e-09
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	4e-09
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	2e-08
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	5e-08
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	2e-07
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	3e-07
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	4e-07
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	5e-07
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	7e-07
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	3e-06
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	6e-06
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	8e-06
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	8e-06
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-05
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	1e-05
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-05
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	2e-05
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	6e-05
PRK07843	557	PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrog	7e-05
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	7e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	1e-04
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	1e-04
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	1e-04
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	1e-04
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	2e-04
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-04
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	2e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	3e-04
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	3e-04
PRK12844	557	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog	4e-04
PRK12835	584	PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrog	5e-04
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	6e-04
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	7e-04
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	9e-04
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	0.001
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	0.001
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	0.001
PRK12809	639	PRK12809, PRK12809, putative oxidoreductase Fe-S b	0.001
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.002
TIGR00031	377	TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu	0.002
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	0.003
pfam01946	229	pfam01946, Thi4, Thi4 family	0.004

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score =  566 bits (1462), Expect = 0.0
 Identities = 231/437 (52%), Positives = 305/437 (69%), Gaps = 9/437 (2%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALL 94
           S + DVVVIG GPGGYVAAI+AAQLGLK  CIE       + ALGGTCLNVGCIPSKALL
Sbjct: 2   SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALL 61

Query: 95  HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
            SS  +  A H FA HG+    V++D+  M+A+KDK V  +T GIEGLFKKNK+T +KG 
Sbjct: 62  ASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR 121

Query: 155 GKFISPSEVS--VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
           G F+  ++    +       TV+  K++IIATGS+ + LPG+  D K I+ +TGAL   E
Sbjct: 122 GSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTE 181

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
           VPKKL VIGAG IGLE+GSVW RLG+EVT++E     + + D ++ K+  ++  KQ +  
Sbjct: 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDI 241

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
            L  K+  +   G GV +    A G  +T LE D ++VS GR P T GLGL+ +G++ D+
Sbjct: 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQT-LEVDKLIVSIGRVPNTDGLGLEAVGLKLDE 300

Query: 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV 392
            G IPV++   TN+P VYAIGDV+ GPMLAHKAEE+GVA  E +AG+ GH+DY+ +P V+
Sbjct: 301 RGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI 360

Query: 393 YTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGV 452
           YT PE+A VGKTE+Q+K  GVEY+ GKFPF+AN RA A+ + +G VKI+A+ +TD+ILGV
Sbjct: 361 YTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGV 420

Query: 453 HIMAPNAGELIHEAAMA 469
           H++ PNA ELI EA +A
Sbjct: 421 HVIGPNASELIAEAVVA 437

Length = 475

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  542 bits (1399), Expect = 0.0
 Identities = 221/426 (51%), Positives = 283/426 (66%), Gaps = 6/426 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVVVIG GP GYVAAI+AAQLGLK   +EK   LGGTCLNVGCIPSKALLH++ +  EA 
Sbjct: 6   DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEAR 65

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
           H+   +G+     ++D   ++A+KDK V  LT G+EGL KKN V  ++G  +F+ P  V 
Sbjct: 66  HAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVE 125

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
           V         +   NIIIATGS  +  PG  ID  RI+ S+ AL L E+PK LV++G GY
Sbjct: 126 VTG--EDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGY 183

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
           IGLE  SV+A LGS+VTVVE    I+P  D EI K+  + LEK  +K +L TKV  V+  
Sbjct: 184 IGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKK 243

Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
            DGV +TLE    GE   +EAD VLV+ GR P T GLGL+  GVE D  G I V+++  T
Sbjct: 244 DDGVLVTLE---DGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT 300

Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGK 403
           N+PG+YAIGDVI GPMLAH A  +G    E +AG     +DY  +P VV+T PE+ASVG 
Sbjct: 301 NVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGL 360

Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
           TEE+ KE G++Y+VGKFPF AN RA  + + +G VK++ +KET +ILG HI+ P A ELI
Sbjct: 361 TEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELI 420

Query: 464 HEAAMA 469
           +E A+A
Sbjct: 421 NEIALA 426

Length = 454

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  539 bits (1392), Expect = 0.0
 Identities = 230/429 (53%), Positives = 295/429 (68%), Gaps = 8/429 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV+VIGGGPGGYVAAI+AAQLGLK   +EK   LGGTCLNVGCIP+KALLHS+ +Y E  
Sbjct: 3   DVIVIGGGPGGYVAAIRAAQLGLKVALVEKE-YLGGTCLNVGCIPTKALLHSAEVYDEIK 61

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
           H     G++  +V VD   M  +K+K V  L  G+ GL KKNKVT +KG  KF+ P  VS
Sbjct: 62  H-AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDPGTVS 120

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPG-ITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
           V   E G   ++ KNIIIATGS  +SLPG    D K +++STGAL L EVP+ LV+IG G
Sbjct: 121 VTG-ENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPESLVIIGGG 179

Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
            IG+E  S++A LGS+VTV+E    I+P  D E+ K  Q++L+K+ +K +  TKV  V+ 
Sbjct: 180 VIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTAVEK 239

Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
           + D V    +   GGE   L  + VLV+ GR P T GLGL+K+GVE D+ GRI V+E   
Sbjct: 240 NDDQVTYENK---GGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVG 402
           TN+PG+YAIGDVI GPMLAH A  +G+   E +AGK   H+DYD VP V+YT PEVASVG
Sbjct: 297 TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAHIDYDAVPSVIYTDPEVASVG 356

Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
            TEEQ KE G + ++GKFPF AN +A A+ + +G VKI+A+K+T +ILG HI+ P+A EL
Sbjct: 357 LTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATEL 416

Query: 463 IHEAAMATH 471
           I EAA+A  
Sbjct: 417 ISEAALAME 425

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score =  535 bits (1380), Expect = 0.0
 Identities = 215/430 (50%), Positives = 285/430 (66%), Gaps = 6/430 (1%)

Query: 40  ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
            + E DV+VIG GPGGYVAAI+AAQLGLK   +EK   LGGTCLN GCIPSKALLH++  
Sbjct: 1   FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK-EKLGGTCLNRGCIPSKALLHAAER 59

Query: 100 YHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS 159
             EA HS    G+K  +V +D   +   K+  V+ LT G+EGL KKNKV  ++G  K + 
Sbjct: 60  ADEARHS-EDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVD 118

Query: 160 PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVV 219
           P+ V V T E G      KNII+ATGS  + LPGI ID + I +S  AL L+EVPK LVV
Sbjct: 119 PNTVRVMT-EDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALNLDEVPKSLVV 177

Query: 220 IGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279
           IG GYIG+E  S +A LG+EVT+VE    I+P  D EI K  +R+L+K+ +K     K  
Sbjct: 178 IGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAK 237

Query: 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339
            V+ + DGV +TLE   GG++  LEAD VLV+ GR P T  LGL+++GV+TD+ G I V+
Sbjct: 238 KVEQTDDGVTVTLE--DGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVD 294

Query: 340 ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVA 399
           E+  TN+P +YAIGD++ GPMLAHKA  +G+   E +AG    +DY  +P V YTHPEVA
Sbjct: 295 EQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVA 354

Query: 400 SVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
           SVG TE + KE G + +V KFPF  N +A A+ + +G VK++ +K+  ++LG H++   A
Sbjct: 355 SVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARA 414

Query: 460 GELIHEAAMA 469
            ELI EA +A
Sbjct: 415 SELIQEAQLA 424

Length = 462

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score =  534 bits (1377), Expect = 0.0
 Identities = 242/426 (56%), Positives = 309/426 (72%), Gaps = 3/426 (0%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVV+IGGGPGGY AAI+A QLGLK  C+E R  LGGTCLNVGC+PSKALLH+S +Y  A 
Sbjct: 5   DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAAS 64

Query: 105 -HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
              FA  G++     ++L  MM QKD++V  LT+G+E LF+KNKV ++KG+G+     +V
Sbjct: 65  GGEFAHLGIEVKP-TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKV 123

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
            V   +G  T ++ K+I+IATGS+   LPG+TID +RI+ STGAL+L EVPK LVVIGAG
Sbjct: 124 VVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAG 183

Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
            IGLE+GSVW RLG++VTVVE+   I P  D E  K  Q++L KQ MKF L +KV G   
Sbjct: 184 VIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATA 243

Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
             DGV LTLEPAAGG    L+AD VLV+ GR P+T GLGL+ +G+ETDK G +  N+   
Sbjct: 244 GADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-ANDHHR 302

Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGK 403
           T++PGV+ IGDV  GPMLAHKAE++ VAC+E +AGK G V+Y  +PGV+YT PEVA+VGK
Sbjct: 303 TSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGK 362

Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
           TEEQ+K  G  Y+VGKFPF ANSRAK   + EG  KILA+  TD++LGVH++ P+  E+I
Sbjct: 363 TEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMI 422

Query: 464 HEAAMA 469
            E  +A
Sbjct: 423 GEFCVA 428

Length = 466

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score =  530 bits (1367), Expect = 0.0
 Identities = 196/429 (45%), Positives = 268/429 (62%), Gaps = 3/429 (0%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
             +  VVV+G GP GY AA +AA LGL+T C+E+   LGG CLNVGCIPSKALLH + + 
Sbjct: 2   EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVI 61

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
            EA  + A HG+ F   ++D+  M A+K+K V  LT G+ G+ K  KVT V G GKF   
Sbjct: 62  EEA-KALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGG 120

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
           + + V   +G  TV++  N IIA GS    LP I  D+ RI  ST AL L EVPK+L+V+
Sbjct: 121 NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLVM 180

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           G G IGLEMG+V+ RLGSEV VVE    ++P+ D +I K F + ++KQ    ML+TKV  
Sbjct: 181 GGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA 239

Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
           V+   DG+ +T+E      +     D VLV+ GR P    L  +K GVE D+ G I V++
Sbjct: 240 VEAKEDGIYVTMEGKKAPAEPQ-RYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK 298

Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
           +  TN+P ++AIGD++  PMLAHK   +G    E +AGK  + D   +P + YT PEVA 
Sbjct: 299 QCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAW 358

Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
           VG TE++ KE G+EY    FP+ A+ RA A D A+G+ K++ +KET ++LG  I+  NAG
Sbjct: 359 VGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAG 418

Query: 461 ELIHEAAMA 469
           EL+ E  +A
Sbjct: 419 ELLGEIGLA 427

Length = 471

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score =  512 bits (1321), Expect = e-180
 Identities = 193/428 (45%), Positives = 264/428 (61%), Gaps = 13/428 (3%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV+VIG GP GYVAA +AA+LG K   IEK G LGGTCLNVGCIPSKAL+ ++  +HEA 
Sbjct: 5   DVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAK 63

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEV 163
           H     G+     ++D   +MA+  +       G+ EGL KK K+  +KG  +F+ P   
Sbjct: 64  H-AEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--- 119

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGA 222
             +T+E     ++ KNI+IATGS V  +PG+  I   R+++S  A  L+++PK L VIG 
Sbjct: 120 --NTVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGG 177

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
           G IGLE+G   +RLG +VTV E    I+P  D E+ KQ Q+ L K+  K  L  KV  V+
Sbjct: 178 GVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
            SGD     LE   GG+   +EAD VLV+ GR P T GLGL+  G+E D+ GR  V+E  
Sbjct: 237 KSGDEKVEELE--KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT 294

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASV 401
            T++PG+YA GDV   P L H+A ++G    E  AG   G V Y  +P VV+T P++ASV
Sbjct: 295 QTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASV 354

Query: 402 GKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGE 461
           G TEE++K  G++Y VG+ PF A  RA+ +   +G VK+ A+K+T ++LG HI+ P+A  
Sbjct: 355 GLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEH 414

Query: 462 LIHEAAMA 469
           LIH  A A
Sbjct: 415 LIHLLAWA 422

Length = 460

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score =  447 bits (1153), Expect = e-155
 Identities = 195/435 (44%), Positives = 269/435 (61%), Gaps = 12/435 (2%)

Query: 43  ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE 102
           E D+V+IGGGPGGYVAAI+A QLGLKT  +EK G LGGTCL+ GCIPSKALLHS+ ++  
Sbjct: 4   EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQT 62

Query: 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
           A  + +  G+  S   +D   +  +KD  V  LT+G+  L KK K+    G G+ + PS 
Sbjct: 63  AKKA-SPFGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSI 121

Query: 163 -------VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPK 215
                  VSV+T  G N ++  +N++IATGS    LPG+  D + ++SS  AL+L  +PK
Sbjct: 122 FSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEALSLETLPK 181

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
            LV++G G IGLE  S+ A  G EVTVVE A  I+P+ D E+ K+  R L+K  ++ +  
Sbjct: 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTG 241

Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            KV+G+ L  DG  + +     GE+  LEAD VLVS GR P T G+GL+   ++ +  G 
Sbjct: 242 AKVLGLTLKKDG-GVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEG-GF 299

Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYT 394
           I +++   T    +YAIGDVI  P LAH A  +G    E +AGK     DY  +P   YT
Sbjct: 300 IQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYT 359

Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHI 454
            PEVASVG TEE+ KE G + +VGKFPF AN +A    +++G VK++A+++T  ILGV  
Sbjct: 360 DPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQA 419

Query: 455 MAPNAGELIHEAAMA 469
           + P+  ELI E A+A
Sbjct: 420 VGPHVTELISEFALA 434

Length = 472

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score =  351 bits (903), Expect = e-117
 Identities = 174/427 (40%), Positives = 243/427 (56%), Gaps = 6/427 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVVV+G GPGGYVAAI+AAQLGLKT  +EK+   GG CLNVGCIPSKALL ++ + H   
Sbjct: 6   DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFT 64

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
               + G+    V  D  A   +  K      +G+  L KKNK+T + GYG F   + + 
Sbjct: 65  KEAKTFGIS-GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLE 123

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
           VD  +GG   V   N IIATGS  + LPG ++ E  +V+    +   E+PK +V+ GAG 
Sbjct: 124 VDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSE-NVVTYEEQILSRELPKSIVIAGAGA 182

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
           IG+E   V    G +VT+VEF    +P+ D E+ K+  +  +K  +K +  TKV  +D +
Sbjct: 183 IGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN 242

Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
           G  V +T+    G  +  LEAD VL + G  P   G GL+K GV     G I +++   T
Sbjct: 243 GSKVTVTVSKKDGKAQE-LEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT 301

Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH--VDYDKVPGVVYTHPEVASVG 402
           N+P +YAIGDV     LAH AE  GV   E +AG       DY  +P   +  P+VAS G
Sbjct: 302 NVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFG 361

Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
            TEEQ +E G + +V KFPF AN +A  + D  G VK++A+ +  ++LG H++ P+  EL
Sbjct: 362 LTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSEL 421

Query: 463 IHEAAMA 469
           + E  +A
Sbjct: 422 LPELTLA 428

Length = 466

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score =  348 bits (895), Expect = e-116
 Identities = 166/429 (38%), Positives = 242/429 (56%), Gaps = 12/429 (2%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           +VVIGGGP GYVAAI AAQ G   T I++   LGGTCLN GC+P+K+LL S+ ++ +   
Sbjct: 3   LVVIGGGPAGYVAAITAAQNGKNVTLIDE-ADLGGTCLNEGCMPTKSLLESAEVHDKVKK 61

Query: 106 SFASH-GVKFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
             A+H G+     S+ +D   M A+K + V+ L +GI+ L KKNK+  ++G   F +   
Sbjct: 62  --ANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHR 119

Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
           V V+       VV  +  IIA GS+   LP    D K I++S  A++L  +P  L+++G 
Sbjct: 120 VRVEY-GDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGG 178

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
           G IG E  S+++RLG++VT+VE A  ++P  D +I    +  LE   +K      + G++
Sbjct: 179 GVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
                     E    G    + A+ VLVS GR P    L L+K GV+    G I VNE  
Sbjct: 239 SYKKQALFEYE----GSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM 293

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVG 402
            TN+P +YA GDVI G  LAH A  +G       +G+   V+Y  VP  +YT PE+ASVG
Sbjct: 294 QTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVG 353

Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
            TE+Q +E   + R+G+FPF AN +A  I +  G VK++ E +  +I+G+ I+ P A EL
Sbjct: 354 LTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATEL 413

Query: 463 IHEAAMATH 471
           I +  +  H
Sbjct: 414 IGQGTVMIH 422

Length = 458

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score =  337 bits (866), Expect = e-111
 Identities = 150/430 (34%), Positives = 224/430 (52%), Gaps = 16/430 (3%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D +VIG G  G   A +AA LG+K   IE RG LGGTC+N GC+P+K L+ S+   H A 
Sbjct: 7   DAIVIGAGQAGPPLAARAAGLGMKVALIE-RGLLGGTCVNTGCVPTKTLIASARAAHLAR 65

Query: 105 HSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSE 162
            + A +GV     V VD  A+MA+K +  +    G E   +    V   +G+ +F SP+ 
Sbjct: 66  RA-AEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNT 124

Query: 163 VSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
           V V     G   ++ K I I TG+   +  +PG+  DE   +++    +L+E+P+ LV+I
Sbjct: 125 VRV-----GGETLRAKRIFINTGARAAIPPIPGL--DEVGYLTNETIFSLDELPEHLVII 177

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           G GYIGLE   ++ R GSEVTV+E    ++P  D ++    +  LE++ +   L  + + 
Sbjct: 178 GGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIR 237

Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
           V+  GDG+ + L+   G  +  +    +LV+ GR P T  LGL+  GVETD  G I V++
Sbjct: 238 VERDGDGIAVGLDCNGGAPE--ITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDD 295

Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVA 399
           +  T  PG+YA GD        H A  D        L G    V    VP   YT P +A
Sbjct: 296 QLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLA 355

Query: 400 SVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
            VG TE + ++ G    VG  P     RA    + +G +K++ + +TD+ILG  I+  + 
Sbjct: 356 RVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHG 415

Query: 460 GELIHEAAMA 469
            E+IHE   A
Sbjct: 416 DEMIHEILDA 425

Length = 463

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score =  330 bits (848), Expect = e-109
 Identities = 145/432 (33%), Positives = 231/432 (53%), Gaps = 18/432 (4%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+VVIG GP G  AA++AA+LG +   IE+   +GG C + G IPSKAL  +  +     
Sbjct: 7   DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAV-LRLIGF 65

Query: 105 HS---FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161
           +    ++S+ VK   + +    ++A+ D  ++       G +++N+V  ++G  +F+ P 
Sbjct: 66  NQNPLYSSYRVK---LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH 122

Query: 162 EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIG 221
            V V+  +G    +    I+IATGS     P +  D  RI  S   L+L+ +P+ L++ G
Sbjct: 123 TVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLDHLPRSLIIYG 182

Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
           AG IG E  S++A LG +VT++     ++  +D EI       L    +      +V  V
Sbjct: 183 AGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKV 242

Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
           +   DGV + L+    G+K  ++AD +L + GRT  T GL L+  G+E D  G++ VNE 
Sbjct: 243 EGGDDGVIVHLK---SGKK--IKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN 297

Query: 342 FATNIPGVYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVA 399
           + T +P +YA+GDVI  P LA  + + G   A           ++   +P  +YT PE++
Sbjct: 298 YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIED--IPTGIYTIPEIS 355

Query: 400 SVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
           SVGKTE+++    V Y VG+  F   +RA+   D  G++KIL  +ET +ILGVH     A
Sbjct: 356 SVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERA 415

Query: 460 GELIH--EAAMA 469
            E+IH  +A M 
Sbjct: 416 TEIIHIGQAIME 427

Length = 461

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score =  328 bits (842), Expect = e-108
 Identities = 165/431 (38%), Positives = 246/431 (57%), Gaps = 14/431 (3%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+V+IG G   + AAIKAA+LG     +E RG LGGTC+NVGC+PSK LL ++ + H A 
Sbjct: 2   DLVIIGSGAAAFAAAIKAAELGASVAMVE-RGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKNKVTYVKGYGKFISPSEV 163
                 G   ++V VD   ++  K + V  L     E +     V Y++G  +F  P  V
Sbjct: 61  KPP--FGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTV 118

Query: 164 SVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIG 221
            VD    G  V   K  +IATG+   +  +PG+   E   ++S  ALAL+ +P+ L VIG
Sbjct: 119 KVD---LGREVRGAKRFLIATGARPAIPPIPGL--KEAGYLTSEEALALDRIPESLAVIG 173

Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
            G IG+E+   +ARLGSEVT+++ +  ++P  + EI    + +L ++ ++ +   +V  V
Sbjct: 174 GGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAV 233

Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
            + G G  +T+E    G +  +EAD +LV+ GR P T GLGL+K GV+ D+ G I V+E 
Sbjct: 234 SVRGGGKIITVE--KPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET 291

Query: 342 FATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
             T+ PG+YA GDV  G  L + A ++G VA    L G +  +D   +P VV+T P VAS
Sbjct: 292 LRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVAS 351

Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
           VG TE + ++ G+E      P     RA+   D  G +K++AE  T K+LGV ++AP A 
Sbjct: 352 VGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAA 411

Query: 461 ELIHEAAMATH 471
           E+I+EAA+A  
Sbjct: 412 EVINEAALAIR 422

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  259 bits (664), Expect = 1e-81
 Identities = 140/436 (32%), Positives = 212/436 (48%), Gaps = 42/436 (9%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D++VIGGG GG  +A +AA  G K   IE +  LGGTC+NVGC+P K + + +    EA 
Sbjct: 6   DLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQ-IAEAF 63

Query: 105 HSFASHGVKFSSVEV--DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
           H +A  G  F   E   D   ++A +D  +  L        + N V  ++G+ +F+    
Sbjct: 64  HDYAP-GYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH- 121

Query: 163 VSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGI--TIDEKRIVSSTGALALNEVPKKLV 218
               T+E         +I+IATG    +  +PG    I       S G  AL E+PK++ 
Sbjct: 122 ----TVEVNGERYTADHILIATGGRPSIPDIPGAEYGIT------SDGFFALEELPKRVA 171

Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
           V+GAGYI +E   V   LGSE  +       +   D +IR+     +EK+ ++       
Sbjct: 172 VVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP 231

Query: 279 VGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
             V+ + DG + LTLE    GE   L  D ++ + GR P T GLGL+  GV+ ++ G I 
Sbjct: 232 KAVEKNADGSLTLTLE---DGE--TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYII 286

Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTH 395
           V+E   TN+PG+YA+GDV     L   A   G    E L        +DY  +P VV++H
Sbjct: 287 VDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSH 346

Query: 396 PEVASVGKTEEQVKELGVE-----YRVGKFPF---LANSRAKAIDDAEGIVKILAEKETD 447
           P + +VG TEE+ +E   E     YR    P    L   R         ++K++   + +
Sbjct: 347 PPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC------LMKLVVVGKEE 400

Query: 448 KILGVHIMAPNAGELI 463
           K++G+H +   A E+I
Sbjct: 401 KVVGLHGIGFGADEMI 416

Length = 450

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score =  237 bits (607), Expect = 2e-73
 Identities = 135/438 (30%), Positives = 213/438 (48%), Gaps = 39/438 (8%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL-GGTCLNVGCIPSKALLHSSHMYHEA 103
           D++VIG G  G   A K A  G K   +E+  A+ GGTC+N+GCIP+K LL +       
Sbjct: 5   DLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVA------- 57

Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
               A   + F  V       MA K+   S L      +   + V        F+S   +
Sbjct: 58  ----AEKNLSFEQV-------MATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVI 106

Query: 164 SV----DTIEGGNTVVKGKNIIIATG--SDVKSLPGITIDEKRIVSSTGALALNEVPKKL 217
            V    + IE     +  + I+I TG  S+V  +PG+  D K +  STG  +L  +P++L
Sbjct: 107 EVQAGDEKIE-----LTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERL 160

Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
            +IG G IGLE   ++ +LGS+VTV++ A+ I+P  +  +    ++ +E+  + F+L   
Sbjct: 161 GIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAH 220

Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
              V   GD V +  E     E      D +L + GR P T  LGL+   +E  + G I 
Sbjct: 221 TTEVKNDGDQVLVVTE----DETYRF--DALLYATGRKPNTEPLGLENTDIELTERGAIK 274

Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTH 395
           V++   T++PGV+A+GDV  GP   + + +D      +L G   +   D   VP  ++  
Sbjct: 275 VDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFIT 334

Query: 396 PEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIM 455
           P ++ VG TE++ KE G+ Y V +    A  RA   +D  G  K++   ET +ILG  + 
Sbjct: 335 PPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLF 394

Query: 456 APNAGELIHEAAMATHDK 473
              + E+I+   MA  +K
Sbjct: 395 GEGSQEIINLITMAMDNK 412

Length = 438

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score =  237 bits (605), Expect = 1e-72
 Identities = 137/426 (32%), Positives = 226/426 (53%), Gaps = 11/426 (2%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           + VIG G     AA+KA + G + T IE RG +GGTC+N+GC+PSK ++ ++H+ H    
Sbjct: 9   IAVIGSGGSAMAAALKATERGARVTLIE-RGTIGGTCVNIGCVPSKIMIRAAHIAHLRRE 67

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKNK-VTYVKGYGKFISPSEV 163
           S    G+   +  VD  A++AQ+   V  L     + + ++N  +T + G  +F+    +
Sbjct: 68  SPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTL 127

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
           +V   +GG   V      I TG+     P   + E   ++ST AL L+ +P++L+VIGA 
Sbjct: 128 TVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGAS 187

Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
            + LE+   +ARLGS VTV+   + ++   D  + +  + +  ++ ++ + +T+   VD 
Sbjct: 188 VVALELAQAFARLGSRVTVLA-RSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDY 246

Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
           +G   +  LE  AG     L A+ +LV+ GRTP T  L L+ IGVET++ G I ++E   
Sbjct: 247 NGR--EFILETNAG----TLRAEQLLVATGRTPNTENLNLESIGVETER-GAIRIDEHLQ 299

Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGK 403
           T + G+YA GD    P   + A   G      + G    +D   +P V++T P+VA+VG 
Sbjct: 300 TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGL 359

Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
           +E + +  G +            RA    D  G +K++AE+ + ++LGV ++A  AGELI
Sbjct: 360 SEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELI 419

Query: 464 HEAAMA 469
             A MA
Sbjct: 420 QTAVMA 425

Length = 468

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  224 bits (573), Expect = 3e-70
 Identities = 112/319 (35%), Positives = 155/319 (48%), Gaps = 39/319 (12%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVV+IGGGP G  AAI+ A+LGLK   IE+    GGTC N GC+P K LL  +     A+
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIER---EGGTCYNRGCLPKKLLLEVAEGLELAI 57

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                               +A  ++       G+E L     V   +G    +      
Sbjct: 58  G-------------------LALPEEVYKE--FGVEVLLGTEVVDIDRGEKTVVLKDVE- 95

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVS-STGALALNEVPKKLVVIG 221
                     +    +IIATG+  +    PG+ +   R V  S   L L E+PK++VV+G
Sbjct: 96  ------TGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLELPKRVVVVG 149

Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
            GYIGLE+ +  A+LG EVTVVE    ++   D EI       LEK  +   +   VV V
Sbjct: 150 GGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGVTVLLVVVVV 209

Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
              GDG  + ++    G+   L+ADVVLV+ GR P T    L++ GVE D+ G I V+E 
Sbjct: 210 VKVGDGKVVEVK---LGDGEELDADVVLVAIGRRPNTE--LLEQAGVELDERGYIVVDEY 264

Query: 342 FATNIPGVYAIGDVIPGPM 360
             T++PG+YA GDV  G  
Sbjct: 265 LRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score =  230 bits (587), Expect = 3e-68
 Identities = 156/542 (28%), Positives = 237/542 (43%), Gaps = 96/542 (17%)

Query: 15  SRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE- 73
           S   +  +      +S           +E DV +IG G GG+ AAI A + GLK      
Sbjct: 98  SLRANGFATSQSMNFS----------DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTG 147

Query: 74  KRGALGGTCLNVGCIPSKALLHSS----------HMYHEAMHSFASHGVKFSSVE----- 118
              ++GGTC+NVGCIPSKALL+++           +Y   +++ A    K   VE     
Sbjct: 148 DDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLV 207

Query: 119 -----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVD--TIEG- 170
                +D+  +       +  L  GIE   K  K      + + I      VD  TI+  
Sbjct: 208 ADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267

Query: 171 --GNTVVKGKNIIIATGSDVKSLP-GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGL 227
             G    K KNIIIATGS   ++P  I +D+K + +S  A+ L  +   + ++G G IGL
Sbjct: 268 KSGKEF-KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGL 325

Query: 228 EMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGD 286
           E   ++  LGSEV   E++  ++P +D ++ K F+R   K K ++  L T +  V     
Sbjct: 326 EFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG 385

Query: 287 GVKLTL---EPAAGGEKTILEA---------DVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
              + +   E   G      +          D  LV+ GR P T  LGLDK+ ++  K G
Sbjct: 386 NQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQM-KRG 444

Query: 335 RIPVNERFATN------IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH------ 382
            + V+E              ++ IGD     MLAH A    +  V+++ GK         
Sbjct: 445 FVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINV 504

Query: 383 -------VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP--FLANSRAKA--- 430
                  + Y  +P V YT PE+A +G TE++ KEL     VG     + ANS+      
Sbjct: 505 ENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENN 564

Query: 431 -------------------IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH 471
                              +D+ EG+VKI+  K+T +ILG+ I+   A  LIHE  +A +
Sbjct: 565 ISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAIN 624

Query: 472 DK 473
            K
Sbjct: 625 LK 626

Length = 659

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score =  226 bits (577), Expect = 1e-67
 Identities = 137/441 (31%), Positives = 217/441 (49%), Gaps = 22/441 (4%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
                V VIG G     AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+ 
Sbjct: 96  ERPLHVAVIGSGGAAMAAALKAVEQGARVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIA 154

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFI 158
           H    S    G+  +   +D   ++AQ+   V  L     EG+   N  +T + G  +F 
Sbjct: 155 HLRRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK 214

Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKK 216
               + V   +GG  VV     +IATG+   V  +PG+   E    +ST AL  + +P++
Sbjct: 215 DDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK--ETPYWTSTEALVSDTIPER 272

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE----FAADIVPSMDGEIRKQFQRSLEKQKMKF 272
           L VIG+  + LE+   +ARLGS+VT++     F  +     D  I +    +   + ++ 
Sbjct: 273 LAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE-----DPAIGEAVTAAFRAEGIEV 327

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
           +  T+   V  +    +  L    G     L AD +LV+ GR P T  L LD  GV  + 
Sbjct: 328 LEHTQASQV--AHVDGEFVLTTGHGE----LRADKLLVATGRAPNTRSLALDAAGVTVNA 381

Query: 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV 392
            G I +++   T++P +YA GD    P   + A   G      + G    +D   +P VV
Sbjct: 382 QGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVV 441

Query: 393 YTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGV 452
           +T P+VA+VG +E +    G+E            RA A  D  G +K++ E+ + +++GV
Sbjct: 442 FTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGV 501

Query: 453 HIMAPNAGELIHEAAMATHDK 473
             +AP AGELI  AA+A  ++
Sbjct: 502 QAVAPEAGELIQTAALAIRNR 522

Length = 561

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score =  222 bits (569), Expect = 1e-67
 Identities = 135/434 (31%), Positives = 214/434 (49%), Gaps = 26/434 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+++IG G G  +   + A    +   +EK G  GGTCLNVGCIP+K  ++++ +     
Sbjct: 3   DLIIIGTGSGNSILDERFA--DKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIR 59

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIE---GLFKKNKVTYVKGYGKFISPS 161
            + A  GV      V  P ++++    +  +  G E   G    N +   +G+ +FI P 
Sbjct: 60  EA-ARLGVDAELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPN-IDVYRGHARFIGPK 117

Query: 162 EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIG 221
            +      G    +    ++IA GS     P I     R  +S   + L E+P+ LV++G
Sbjct: 118 TLRT----GDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIVG 173

Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
            G+I  E   V++ LG  VTVV  +  ++  +D +I ++F   L  ++    L   VVGV
Sbjct: 174 GGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNVVGV 232

Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
              G GV L L     G  + +EADV+LV+ GR P    L     GV+ D+ GR+ V+E 
Sbjct: 233 SQDGSGVTLRL---DDG--STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEY 287

Query: 342 FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH----VDYDKVPGVVYTHPE 397
             T+  GV+A+GDV     L H A  +       L   H       D+  VP  V+THP+
Sbjct: 288 QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLL--HPDDLIASDHRFVPAAVFTHPQ 345

Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
           +ASVG TE + +  G++  V    +   +   A++D  G VK++A+++T ++LG HI+ P
Sbjct: 346 IASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGP 405

Query: 458 NAGELIHEA--AMA 469
            A  LI     AM+
Sbjct: 406 QASTLIQPLIQAMS 419

Length = 451

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score =  222 bits (567), Expect = 5e-67
 Identities = 135/431 (31%), Positives = 220/431 (51%), Gaps = 12/431 (2%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V +IG G   + AAIKAA+ G + T IE    +GG C+NVGC+PSK L+ ++ + H+   
Sbjct: 19  VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQ-QR 77

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKN-KVTYVKGYGKFISPSEV 163
           S    GV+  +  +D   ++ Q+   V  L     + +   N  +T +KGY +F   + +
Sbjct: 78  SNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTL 137

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGA 222
            V   +GG  V+     +IATGS   ++P I  + +    +ST AL  +E+P  L VIG+
Sbjct: 138 VVRLHDGGERVLAADRCLIATGS-TPTIPPIPGLMDTPYWTSTEALFSDELPASLTVIGS 196

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
             +  E+   +ARLGS VT++   + ++   D  + +      EK+ ++ +  T+   V+
Sbjct: 197 SVVAAEIAQAYARLGSRVTILA-RSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVE 255

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
              +G  LT      G   +  A+ +L+S GR   T  L L+ +GV TD  G I VN   
Sbjct: 256 HDDNGFVLTT-----GHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM 309

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVG 402
            T+ P +YA GD    P   + A   G      + G +  +D   +P V++T P+VA+VG
Sbjct: 310 ETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVG 369

Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
            +E +    G+E            RA A  + +G +K++AE+ T K++G  I+A   GEL
Sbjct: 370 LSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGEL 429

Query: 463 IHEAAMATHDK 473
           I  AA+A H++
Sbjct: 430 IQSAALAIHNR 440

Length = 479

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score =  218 bits (557), Expect = 1e-65
 Identities = 141/439 (32%), Positives = 215/439 (48%), Gaps = 29/439 (6%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           +V+IGGGPGGY AA+ AAQLG   T IE+ G LGG  +   C+PSK L+ ++    E   
Sbjct: 4   IVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATA----EVRT 58

Query: 106 SFASH---GVKFSS---VEVDLPAMMAQKDKAVSNLTRG----IEGLFKKNKVTYVKGYG 155
                   G++F       VDLPA+ A+    V  L       I    ++  V  + G G
Sbjct: 59  ELRRAAELGIRFIDDGEARVDLPAVNAR----VKALAAAQSADIRARLEREGVRVIAGRG 114

Query: 156 KFIS----PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
           + I     P  V V T +GG   +    ++IATG+  + LP    D +RI++      L+
Sbjct: 115 RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLYDLD 174

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
           E+P+ L+V+G+G  G E  S +  LG +VT+V     ++P  D +  +  +    ++ M 
Sbjct: 175 ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMT 234

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
            + +++   V+ +GDGV +TL      +   +E    L++ G  P TAGLGL++ GVE  
Sbjct: 235 VLKRSRAESVERTGDGVVVTLT-----DGRTVEGSHALMAVGSVPNTAGLGLEEAGVELT 289

Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPG 390
             G I V+    T++PG+YA GD      LA  A   G +A    L      +    V  
Sbjct: 290 PSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVAS 349

Query: 391 VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKIL 450
            V+T PE+A+VG ++  +    V  R    P   N RAK     +G VK+     T  ++
Sbjct: 350 NVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVI 409

Query: 451 GVHIMAPNAGELIHEAAMA 469
           G  ++AP A ELI   A+A
Sbjct: 410 GGVVVAPRASELILPIALA 428

Length = 466

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score =  202 bits (515), Expect = 9e-60
 Identities = 135/430 (31%), Positives = 223/430 (51%), Gaps = 16/430 (3%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D +VIGGG GG  +A +AA+ G K   +E +  LGGTC+NVGC+P K + ++S +  E M
Sbjct: 4   DYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDL-AERM 61

Query: 105 HSFASHGVKFSSV-EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
           H  A +G   +     + P +  ++D  V  L    +   +KNKV  + G+ +F     V
Sbjct: 62  HDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTV 121

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
            V+            +I+IATG        I   E     S G  AL E+PK++V++GAG
Sbjct: 122 EVN-----GRDYTAPHILIATGGKPSFPENIPGAELGT-DSDGFFALEELPKRVVIVGAG 175

Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
           YI +E+  V   LGSE  +V     ++ S D  I +      EK+ +     +K V V+ 
Sbjct: 176 YIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEK 235

Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
           + +G KL +    G  K+I + D ++ + GR P T GLGL+ +G++ ++ G+I V+E   
Sbjct: 236 TVEG-KLVIHFEDG--KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQN 292

Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVASV 401
           TN+PG+YA+GDV+    L   A   G    E L        +DY+ VP VV++HP + ++
Sbjct: 293 TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTI 352

Query: 402 GKTEEQ-VKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
           G TE++ +++ G E  +V    F     A   +  +  +K++   + +K++G+H +    
Sbjct: 353 GLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGV 412

Query: 460 GELIHEAAMA 469
            E++   A+A
Sbjct: 413 DEMLQGFAVA 422

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score =  198 bits (506), Expect = 2e-58
 Identities = 120/432 (27%), Positives = 206/432 (47%), Gaps = 24/432 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+ VIG G GG  AA  AA LG K   I +   +GGTC+  GC+P K ++++S  + E  
Sbjct: 4   DLFVIGAGSGGVRAARLAAALGAKVA-IAEEFRVGGTCVIRGCVPKKLMVYASQ-FAEHF 61

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
              A +G        D   ++A KD+ ++ L+              + G  + + P+ V 
Sbjct: 62  EDAAGYGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVE 121

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVK--SLPG----ITIDEKRIVSSTGALALNEVPKKLV 218
           V       T    + I+IA G      +LPG    IT +E        A  L  +PK ++
Sbjct: 122 VLASGKTYT---AEKILIAVGGRPPKPALPGHELGITSNE--------AFHLPTLPKSIL 170

Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
           + G GYI +E   ++  LG + T++    +I+   D ++R+    +LE++ ++ + +  +
Sbjct: 171 IAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSI 230

Query: 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
             +    DG +L    +   E   + ADVVL + GR+P T GLGL+  GV  + +G I V
Sbjct: 231 TSISKDDDG-RLKATLSKHEE---IVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286

Query: 339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEF-LAGKHGHVDYDKVPGVVYTHPE 397
           +E   T+ P +YA+GDV     L   A  +     E          D+D +   V++ P 
Sbjct: 287 DEYSRTSTPSIYAVGDVTDRINLTPVAIHEATCFAETEFGNNPTSFDHDLIATAVFSQPP 346

Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
           + +VG TEE+ +    +  V +  F       +    + ++K++ + + DK+LG H++ P
Sbjct: 347 IGTVGLTEEEARRKFGDIEVYRAEFRPMKATFSGRQEKTLMKLVVDAKDDKVLGAHMVGP 406

Query: 458 NAGELIHEAAMA 469
           +A E+I   A+A
Sbjct: 407 DAAEIIQGLAIA 418

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score =  198 bits (506), Expect = 2e-58
 Identities = 134/433 (30%), Positives = 218/433 (50%), Gaps = 22/433 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+++IG G G    +I   +   K   I ++G  GGTCLNVGCIP+K  ++++ +     
Sbjct: 4   DLIIIGTGSGN---SIPDPRFADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIG 60

Query: 105 HSFASHGVKFSSVEVDLPAMMAQK-DKAVSNLTRGIEGLFKKNK---VTYVKGYGKFISP 160
            S A  G+      V  P ++++     +  +  G E   + ++   +    G+ +F+ P
Sbjct: 61  ES-ARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGP 119

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
             +     E     + G  I+IA GS     P I     R  ++   + L E+P+ LV++
Sbjct: 120 RTLRTGDGE----EITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIV 175

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           G GYI  E   V++ LG+ VT+V  +  ++  +D +I  +F   + K+K    L   V  
Sbjct: 176 GGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTE-IAKKKWDIRLGRNVTA 234

Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
           V+  GDGV LTL+     + + + ADV+LV+ GR P    L  +  GVE D+ GRI V+E
Sbjct: 235 VEQDGDGVTLTLD-----DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289

Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEV 398
              T+  GV+A+GDV     L H A  +       L   +      +D VP  V+THP++
Sbjct: 290 YGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQI 349

Query: 399 ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
           A+VG TE++ +E G +  V    +   +   A++D  G  K++A+++T K+LG HI+ P 
Sbjct: 350 ATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQ 409

Query: 459 AGELIHE--AAMA 469
           A  LI     AMA
Sbjct: 410 ASSLIQPLITAMA 422

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score =  193 bits (491), Expect = 7e-56
 Identities = 124/443 (27%), Positives = 208/443 (46%), Gaps = 24/443 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHS 96
           D++VIGGG GG  AA +AA  G K   ++         R  +GGTC+NVGCIP K +  +
Sbjct: 4   DLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQA 63

Query: 97  SHMYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG 155
           + +      S   +G K   +V+ D   ++      + +L  G     ++ KV Y   Y 
Sbjct: 64  ALLGQALKDSRN-YGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENAYA 122

Query: 156 KFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPK 215
           +F+    +     +G   +   +  +IATG   +  PGI   ++  ++S    +L   P 
Sbjct: 123 EFVDKHRIKATNKKGKEKIYSAERFLIATGERPR-YPGIPGAKELCITSDDLFSLPYCPG 181

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K +V+GA Y+ LE     A +G +VTV+   + ++   D +   +    +E+  +KF  +
Sbjct: 182 KTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDCANKVGEHMEEHGVKFKRQ 240

Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEA-DVVLVSAGRTPFTAGLGLDKIGVETDK-M 333
              + V+     V +           I E  D VL++ GR   T  L L+ +GV+ +K  
Sbjct: 241 FVPIKVEQIEAKVLVE---FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKT 297

Query: 334 GRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGV 391
           G+IP +E   TN+P +YA+GD++   P L   A + G    + L  G     DY+ VP  
Sbjct: 298 GKIPADEEEQTNVPYIYAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVICDYENVPTT 357

Query: 392 VYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFLANSRAKAIDDAEGIVKILA-EKET 446
           V+T  E  + G +EE+  E      VE     F  L  +     +  +   K++  +KE 
Sbjct: 358 VFTPLEYGACGLSEEKAVEKFGEENVEVFHSYFWPLEWTIPSRDNHNKCYAKLVCNKKEN 417

Query: 447 DKILGVHIMAPNAGELIHEAAMA 469
           ++++G H++ PNAGE+    A A
Sbjct: 418 ERVVGFHVVGPNAGEVTQGFAAA 440

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score =  191 bits (487), Expect = 8e-56
 Identities = 127/424 (29%), Positives = 210/424 (49%), Gaps = 32/424 (7%)

Query: 47  VVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL-GGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V+IG G  G   A+  A+ G +   IE+  A+ GGTC+N+GCIP+K L+H +        
Sbjct: 7   VIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------ 60

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                         D    + +K++ V+ L  +    L     +  + G  +FI+   + 
Sbjct: 61  ------------HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLR 108

Query: 165 VDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
           V     GN  + G+ I I TG+   V  +PGIT     +  STG L L E+P  L ++G 
Sbjct: 109 VHR-PEGNLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGLLNLKELPGHLGILGG 166

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
           GYIG+E  S++A  GS+VT++E A+  +P  D +I       L  Q +  +L   V  + 
Sbjct: 167 GYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERIS 226

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
              + V++  E A       L  D +L+++GR P TA L  +  G+  ++ G I V++  
Sbjct: 227 HHENQVQVHSEHAQ------LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEED-GVACVEFLA-GKHGHVDYDKVPGVVYTHPEVAS 400
            T    ++A+GDV  G    + + +D  +   E L  GK    D   VP  V+  P ++ 
Sbjct: 281 HTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSR 340

Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
           VG TEEQ +E G + +V   P  A  RA+ ++D  G++K + + +T +ILG  ++  ++ 
Sbjct: 341 VGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSH 400

Query: 461 ELIH 464
           E+I+
Sbjct: 401 EMIN 404

Length = 441

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score =  186 bits (475), Expect = 2e-53
 Identities = 136/446 (30%), Positives = 218/446 (48%), Gaps = 38/446 (8%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIE---------KRGALGGTCLNVGCIPSKALLH 95
           D+ VIG G GG  AA  +A  G K    E           G +GGTC+  GC+P K L++
Sbjct: 27  DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVY 86

Query: 96  SSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
            +  +        ++G + +  V+ +   ++ +K   +  L    + L     V   +G 
Sbjct: 87  GA-TFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGE 145

Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG----ITIDEKRIVSSTGAL 208
           GK + P+EV V  ++G       K+I+IATGS  +  ++PG    IT DE        AL
Sbjct: 146 GKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITSDE--------AL 197

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
           +L E+PK+ VV+G GYI +E  S+W  +G+ V +       +   D E+R    R+LE +
Sbjct: 198 SLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGR 257

Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV 328
            +    +T +  +  +  G+K+  +   G E     ADVVL + GR P T  L L+ +GV
Sbjct: 258 GINLHPRTNLTQLTKTEGGIKVITD--HGEE---FVADVVLFATGRAPNTKRLNLEAVGV 312

Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGV--ACVEFLAGKHGHVDYD 386
           E DK G + V+E   TNIP ++AIGDV     L   A  +G   A   F  G+    DY+
Sbjct: 313 ELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVF-GGQPTKPDYE 371

Query: 387 KVPGVVYTHPEVASVGKTEEQVKELG---VEYRVGKFPFLANSRAKAIDDAEGIVKILAE 443
            V   V+  P ++ VG +EE+  E     +      F  + N+ +   +    ++K++ +
Sbjct: 372 NVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKT--VMKLIVD 429

Query: 444 KETDKILGVHIMAPNAGELIHEAAMA 469
            ETDK+LG  +  P+A E++   A+A
Sbjct: 430 AETDKVLGASMCGPDAPEIMQGIAVA 455

Length = 499

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score =  170 bits (433), Expect = 1e-47
 Identities = 140/451 (31%), Positives = 216/451 (47%), Gaps = 40/451 (8%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCI---------EKRGALGGTCLNVGCIPSKALLH 95
           D+VVIG G GG  A   AA L  K   +             ALGGTC+NVGC+P K L+ 
Sbjct: 5   DLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHHGPPFYAALGGTCVNVGCVPKK-LMV 63

Query: 96  SSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVK 152
           +   Y + +   A  G +F  SSV+ +  A++A K+KAV ++ +  EG+F   + +T+  
Sbjct: 64  TGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFL 123

Query: 153 GYGKFISPSEVSVDTIEGGNTVVK----GKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
           G+G     + V V       + VK     ++I++ATGS    + GI   E   +SS  A 
Sbjct: 124 GWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS-WPQMLGIPGIE-HCISSNEAF 181

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSV---WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL 265
            L+E P++++ +G G+I +E   +   +   G +VT+      I+   D  +RK+  + L
Sbjct: 182 YLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241

Query: 266 EKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLD 324
               +  M       V L+ DG K +T E         L+ DVV+++ GR P T  L LD
Sbjct: 242 RANGINIMTNENPAKVTLNADGSKHVTFESGK-----TLDVDVVMMAIGRVPRTQTLQLD 296

Query: 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHV 383
           K+GVE  K G I V+E   TN+P +YAIGDV    ML   A  +G A V+     K    
Sbjct: 297 KVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKT 356

Query: 384 DYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPFLAN---SRAKAIDDAEGI 437
           D+ +V   V++ P + + G  EE      E    Y     P + N   S+ K       +
Sbjct: 357 DHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKF-----V 411

Query: 438 VKILAEKETDKILGVHIMAPNAGELIHEAAM 468
            KI+       +LGVH++  ++ E+I    +
Sbjct: 412 AKIVTNHADGTVLGVHLLGDSSPEIIQAVGI 442

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score =  159 bits (403), Expect = 6e-43
 Identities = 131/439 (29%), Positives = 211/439 (48%), Gaps = 29/439 (6%)

Query: 45  DVVVIGGGPGG---------YVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH 95
           D+  IG G GG         + A+    +L   T   +  G +GGTC+  GC+P K L++
Sbjct: 81  DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVY 140

Query: 96  SSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG 155
           +S   HE   S        +  + D   ++A K+  +  LT   + + K   VT ++G G
Sbjct: 141 ASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRG 200

Query: 156 KFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEV 213
           K + P  V VD       +   +NI+IA G    +  +PGI    +  + S  AL L   
Sbjct: 201 KIVDPHTVDVD-----GKLYTARNILIAVGGRPFIPDIPGI----EHAIDSDAALDLPSK 251

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
           P+K+ ++G GYI LE   ++  L S+V V      ++   D E+R      +  + ++F 
Sbjct: 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFH 311

Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
            +     +  S DG  L+L+   G   T+     V+ + GR P T  LGL+++GV+ DK 
Sbjct: 312 TEESPQAIIKSADGS-LSLKTNKG---TVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKN 367

Query: 334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVV 392
           G I V+E   T++P ++A+GDV     L   A  +G A  + L G      DY  VP  V
Sbjct: 368 GAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAV 427

Query: 393 YTHPEVASVGKTEEQ-VKELG-VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKIL 450
           ++ P +  VG TEEQ ++E G V+     F  L  + +   D     +K++   +T+K+L
Sbjct: 428 FSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRV--FMKLIVCAKTNKVL 485

Query: 451 GVHIMAPNAGELIHEAAMA 469
           GVH+   +A E+I   A+A
Sbjct: 486 GVHMCGEDAPEIIQGFAVA 504

Length = 558

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score =  150 bits (381), Expect = 7e-40
 Identities = 119/492 (24%), Positives = 213/492 (43%), Gaps = 79/492 (16%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D++VIGGG GG  AA +AA+   K   +E +  LGGTC+NVGC+P K + +++ + H+ +
Sbjct: 50  DLIVIGGGSGGMAAARRAARNKAKVALVE-KDYLGGTCVNVGCVPKKIMFNAASI-HDIL 107

Query: 105 HSFASHGVKFSSVEV-DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
            +   +G  F +    +LP ++ ++DK +  L        KK+ V Y +G G  +S ++V
Sbjct: 108 ENSRHYG--FDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQV 165

Query: 164 SVDTI------------------------EGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199
            +  +                             V++GKNI+IA G+     P +   E 
Sbjct: 166 LIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNK-PIFPDVKGKEF 224

Query: 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRK 259
            I SS     + E  K++ + G+GYI +E+ +V  RLG+E  +      ++   D  I  
Sbjct: 225 TI-SSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIIN 282

Query: 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319
           + +  ++K  +  +  T     ++     K      + G K     D V+   GR+P T 
Sbjct: 283 ELENDMKKNNINII--THANVEEIEKVKEKNLTIYLSDGRKYE-HFDYVIYCVGRSPNTE 339

Query: 320 GLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI------------------PGPML 361
            L L  + ++T K G I V++   T++  +YA+GD                      P L
Sbjct: 340 DLNLKALNIKTPK-GYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYL 398

Query: 362 AHKAEEDGVACVEF----------------LAGKHGHV-DYDKVPGVVYTHPEVASVGKT 404
             K    G +                    L G      +Y  +P V+++HP + ++G +
Sbjct: 399 KKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLS 458

Query: 405 EEQ-VKELGVE----YRVGKFP--FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
           E++ +   G E    Y   +F   F +          +  +K++   + + I G+HI+  
Sbjct: 459 EQEAIDIYGKENVKIYE-SRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGL 517

Query: 458 NAGELIHEAAMA 469
           NA E++   A+A
Sbjct: 518 NADEILQGFAVA 529

Length = 561

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score =  144 bits (366), Expect = 4e-38
 Identities = 131/465 (28%), Positives = 207/465 (44%), Gaps = 61/465 (13%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHS 96
           D+VVIGGG GG  AA +AA  G K    +         +  LGGTC+NVGC+P K + ++
Sbjct: 7   DLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYA 66

Query: 97  SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGL-------FKKNKVT 149
           +++     H    +G K SS             K V+ +   I  L        + +KV 
Sbjct: 67  ANIGSIFHHDSQMYGWKTSSSF--------NWGKLVTTVQNHIRSLNFSYRTGLRSSKVE 118

Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATG---SDVKSLPGITIDEKRIVSSTG 206
           Y+ G  K      VS        T+   K I+IATG   S  + +PG    ++  ++S  
Sbjct: 119 YINGLAKLKDEHTVSYGDNSQEETIT-AKYILIATGGRPSIPEDVPGA---KEYSITSDD 174

Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--SMDGEIRKQFQRS 264
             +L++ P K +++GA YIGLE       LG +VTV   A   +P    D +  ++    
Sbjct: 175 IFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTV---AVRSIPLRGFDRQCSEKVVEY 231

Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLD 324
           +++Q   F     VV +++     K+ +  + G   T    D VL + GR P   GL L+
Sbjct: 232 MKEQGTLF--LEGVVPINIEKMDDKIKVLFSDG---TTELFDTVLYATGRKPDIKGLNLN 286

Query: 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGH 382
            IGV  +K  +I       TNIP ++A+GDV+ G P L   A + G+     L    +  
Sbjct: 287 AIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEF 345

Query: 383 VDYDKVPGVVYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFL---ANSRAKAIDDAE 435
           +DY  +P  ++T  E  + G + E          +E  + +F  L   A  R K     +
Sbjct: 346 IDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARK 405

Query: 436 G----------IVKILAEKETD-KILGVHIMAPNAGELIHEAAMA 469
                      + K++  K  D K++G H + PNAGE+    ++A
Sbjct: 406 DEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLA 450

Length = 499

>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

 Score =  125 bits (316), Expect = 1e-34
 Identities = 50/82 (60%), Positives = 63/82 (76%)

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           VP VV+T PE+ASVG TEE+ K+ G E +VGKFPF AN RA A  + +G VK++A+ ET 
Sbjct: 1   VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60

Query: 448 KILGVHIMAPNAGELIHEAAMA 469
           +ILG HI+ PNAGELI EAA+A
Sbjct: 61  RILGAHIVGPNAGELIQEAALA 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  101 bits (253), Expect = 2e-23
 Identities = 102/427 (23%), Positives = 170/427 (39%), Gaps = 66/427 (15%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           +V++GGG  G  AA    +L L         A   T +                 +    
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLL---------AAEITLIGR----------EPKYSYY--R 39

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
              S  V      ++      + ++A      GI+ +    +VT +    K         
Sbjct: 40  CPLSLYVGGGIASLEDLRYPPRFNRA-----TGID-VRTGTEVTSIDPENK--------- 84

Query: 166 DTIEGGNTVVKGKNIIIATGSDVKSLPGIT---IDEKRIVSSTGAL-ALNEVPKKLVVIG 221
             +   +  ++   +++ATG+  +  P      +   R+     AL    E PK +VV+G
Sbjct: 85  -VVLLDDGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVG 143

Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           AG IGLE     A+ G +VT++E A  +   + D E+ ++    LEK  ++ +L TKVVG
Sbjct: 144 AGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVG 203

Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
           V+  G G  L +E   G +   ++AD+V++  G  P    L  D +       G + V+E
Sbjct: 204 VE--GKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDE 260

Query: 341 RFAT-NIPGVYAIGDV--------IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
           R  T   P VYA GDV          G  +A  A          +A ++          +
Sbjct: 261 RGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG---RIAAENIAGALRIPGLL 317

Query: 392 VYTHPEV-----ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKE 445
                +V     AS G TE   KE G++  +       + RA     AE + +K++ + +
Sbjct: 318 GTVISDVGDLCAASTGLTEG--KERGIDVVLV-VSGGKDPRAHLYPGAELVGIKLVGDAD 374

Query: 446 TDKILGV 452
           T +ILG 
Sbjct: 375 TGRILGG 381

Length = 415

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 97.5 bits (243), Expect = 7e-22
 Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 49/320 (15%)

Query: 180 IIIATGSDVKSLPGITIDEKRI--------VSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
           +I++ G+         I+   +          +          + +V+IG GYIG+EM  
Sbjct: 95  LILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAE 154

Query: 232 VWARLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
                G  VT++  +  I+    D E+ +  +  L+K ++   L  +V  ++        
Sbjct: 155 ALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVF 214

Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350
           T          + +AD+V+++ G  P +        G++  + G I VNE+F T++P +Y
Sbjct: 215 T-------SGGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIY 265

Query: 351 AIGDV-------------IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHP- 396
           A GDV             +P   LA  A + G    E +AG           GV+ T+  
Sbjct: 266 AAGDVAESHNIITKKPAWVP---LAWGANKMGRIAGENIAGNDIE-----FKGVLGTNIT 317

Query: 397 -----EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKIL 450
                 +AS G TE + K+L ++Y+       A + A        + +K++ EK+T +IL
Sbjct: 318 KFFDLTIASTGVTENEAKKLNIDYKTVFVK--AKTHANYYPGNSPLHLKLIYEKDTRRIL 375

Query: 451 GVHIMAPN-AGELIHEAAMA 469
           G   +    A + I   A A
Sbjct: 376 GAQAVGKEGADKRIDVLAAA 395

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 35/78 (44%), Positives = 50/78 (64%)

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           ++VV+G GYIGLE  S  A+LGS+VTVVE    ++   D EI K  Q  LEK  ++ +L 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60

Query: 276 TKVVGVDLSGDGVKLTLE 293
           T V  ++ +GDGV + L+
Sbjct: 61  TTVEEIEGNGDGVVVKLK 78

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 76/316 (24%), Positives = 122/316 (38%), Gaps = 51/316 (16%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV++IGGGP G  AAI AA+ GLK   I + G  GG                     +  
Sbjct: 5   DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG---------------------QLT 43

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
            +            +  P +M Q  +       G+E +  +  V  V+  G         
Sbjct: 44  KTTDVENYPGFPGGILGPELMEQMKEQAEKF--GVEIVEDE--VEKVELEGGPF------ 93

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN---EVPKKLVVIG 221
              ++      + K +IIATG+      G+  +E+         A        K +VVIG
Sbjct: 94  --KVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIG 150

Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFMLKTKVVG 280
            G   +E     +++  +VT+      +    +    +     L+K  K++ +  T V  
Sbjct: 151 GGDSAVEEALYLSKIAKKVTL------VHRRDEFRAEEILVERLKKNVKIEVLTNTVVKE 204

Query: 281 VDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339
           +     +GV L       GE+  L  D V ++ G  P T    L K     D+ G I V+
Sbjct: 205 ILGDDVEGVVLKNVK---GEEKELPVDGVFIAIGHLPNT---ELLKGLGVLDENGYIVVD 258

Query: 340 ERFATNIPGVYAIGDV 355
           E   T++PG++A GDV
Sbjct: 259 EEMETSVPGIFAAGDV 274

Length = 305

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 86.5 bits (215), Expect = 8e-19
 Identities = 82/324 (25%), Positives = 127/324 (39%), Gaps = 64/324 (19%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV++IG GP G  AAI AA+  LK   IE  G  GG       + +           E M
Sbjct: 1   DVIIIGAGPAGLTAAIYAARANLKPLLIEG-GEPGGQLTTTTEVENYPGFPEGISGPELM 59

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                  VKF +  +                   +  + K  +   V             
Sbjct: 60  EKMKEQAVKFGAEII----------------YEEVIKVDKSGRPFKVYT----------- 92

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK---RIVSST----GALALNEVPKKL 217
                G       K +IIATG+  + L GI  +++   R VS      G    N   K++
Sbjct: 93  -----GDGKEYTAKAVIIATGASARKL-GIPGEDEFWGRGVSYCATCDGPFFKN---KEV 143

Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
            V+G G   +E      R+  +VT+V    +F A+    +   ++K         K++F+
Sbjct: 144 AVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAE--KILLDRLKK-------NPKIEFL 194

Query: 274 LKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
             + V  +   GD     + ++    GE+  LE D V ++ G  P T  L   K  +E D
Sbjct: 195 WNSTVKEIV--GDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELL---KGLLELD 249

Query: 332 KMGRIPVNERFATNIPGVYAIGDV 355
           + G I  +E   T++PGV+A GDV
Sbjct: 250 ENGYIVTDEGMRTSVPGVFAAGDV 273

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 84/277 (30%), Positives = 123/277 (44%), Gaps = 32/277 (11%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFM 273
           K +V+IGAG+IGLE       LG  V +++    I+P S D EI    +  L +  ++  
Sbjct: 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH 209

Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
           L   V  +    D V+         +K   EADVV+V+ G  P T    L+  G++T K 
Sbjct: 210 LNEFVKSLI-GEDKVE-----GVVTDKGEYEADVVIVATGVKPNTE--FLEDTGLKTLKN 261

Query: 334 GRIPVNERFATNIPGVYAIGD-------VIPGPM---LAHKAEEDGVACVEFLAGKHGHV 383
           G I V+E   T+I  +YA GD       V    +   LA  A + G    E LAG+H   
Sbjct: 262 GAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH--- 318

Query: 384 DYDKVPGVVYTHP------EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI 437
                 G + +        E A  G TEE+ K+LG++Y+   F    N         +  
Sbjct: 319 --VSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKT-VFIKDKNHTNYYPGQEDLY 375

Query: 438 VKILAEKETDKILGVHIMAPNAGEL-IHEAAMATHDK 473
           VK++ E +T  ILG  I+      L I   A+A + K
Sbjct: 376 VKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAK 412

Length = 444

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 98/332 (29%), Positives = 139/332 (41%), Gaps = 67/332 (20%)

Query: 40  ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
           A D  DV+V+GGGP G  AAI AA+ G++T  + +R   GG  L+   I +         
Sbjct: 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIEN--------- 256

Query: 100 YHEAMHSFASHGVKFSSV-EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
                         F SV E + P + A  +  V      +  L + +K+      G  I
Sbjct: 257 --------------FISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLI 302

Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVSST------GALAL 210
              EV    +  G  V+K + +I+ATG+  +++  PG   DE R           G L  
Sbjct: 303 ---EV---ELANG-AVLKARTVILATGARWRNMNVPGE--DEYRNKGVAYCPHCDGPLFK 353

Query: 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRSLE 266
               K++ VIG G  G+E     A +   VT++EFA    AD V           Q  L 
Sbjct: 354 G---KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAV----------LQDKLR 400

Query: 267 KQKMKFMLKTKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
                  + T     ++ GDG K   L       GE+  LE + V V  G  P T  L  
Sbjct: 401 SLP-NVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL-- 457

Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
            K  VE ++ G I V+ R  TN+PGV+A GD 
Sbjct: 458 -KGAVELNRRGEIIVDARGETNVPGVFAAGDC 488

Length = 520

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 82/389 (21%), Positives = 134/389 (34%), Gaps = 103/389 (26%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V VIG GP G  AA   A+ G   T  E+    GG   N+  IP                
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI--IP---------------- 583

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG---KFISPSE 162
                       +  +PA + Q D                  + +VK +G   +F    +
Sbjct: 584 ------------QFRIPAELIQHD------------------IEFVKAHGVKFEFGCSPD 613

Query: 163 VSVDTIEGGNTVVKG-KNIIIATGSDVKSLPGITIDEKRIVSSTGALA-LNEVP------ 214
           ++V+ ++      +G   +++A G+D      +    + ++ +   L             
Sbjct: 614 LTVEQLKN-----EGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLG 668

Query: 215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVV------EFAADIVPSMDGEIRKQFQRSLE 266
           K +VV+G G   ++      R+    +VTVV      E  A          R++++ +LE
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAW---------REEYEEALE 719

Query: 267 KQKMKFMLKTKVVGVDLSGDGVKLTLE--------------PAAGGEKTILEADVVLVSA 312
              ++F         D  G    LT                P   GE   LEAD V+ + 
Sbjct: 720 -DGVEFKELLNPESFDADG---TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAI 775

Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
           G    T  L     G+  DK G   V+    T++  VY IGDV  GP     A  D    
Sbjct: 776 GEQVDTELL--KANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRA 833

Query: 373 VEFLAGKHGHVDYDKVPGVVYTHPEVASV 401
            + +  + G   +       + + E A +
Sbjct: 834 ADAILSREGIRSHQND--KYWNNVEPAEI 860

Length = 1019

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 92/334 (27%), Positives = 150/334 (44%), Gaps = 64/334 (19%)

Query: 37  FASASDEN----DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
            A+++ E     DV+V+GGGP G  AAI AA+ GL+T  + +R  +GG   +   I +  
Sbjct: 202 EAASALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIEN-- 257

Query: 93  LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
           L+   +          + G + ++   +L   + Q    +    R  + +  ++ +  V 
Sbjct: 258 LISVPY----------TTGSQLAA---NLEEHIKQYPIDLMENQR-AKKIETEDGLIVV- 302

Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
                         T+E G  V+K K++I+ATG+  + L G+  +++ I          +
Sbjct: 303 --------------TLESGE-VLKAKSVIVATGARWRKL-GVPGEKEYIGKGVAYCPHCD 346

Query: 213 VP----KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRS 264
            P    K + VIG G  G+E     A +   VTV+EFA    AD V        K   +S
Sbjct: 347 GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKV-----LQDKL--KS 399

Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLT---LEPAAGGEKTILEADVVLVSAGRTPFTAGL 321
           L    +    +T  +     GDG K+T    +    GE+  L+ D V V  G  P T  L
Sbjct: 400 LPNVDILTSAQTTEI----VGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL 455

Query: 322 GLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
              K  VE ++ G I ++ER  T++PG++A GDV
Sbjct: 456 ---KDAVELNRRGEIVIDERGRTSVPGIFAAGDV 486

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 73.0 bits (180), Expect = 5e-14
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 22/156 (14%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFM 273
           ++++V+G G IG E+     R G  VT+V+ AA ++ S M  E+  + Q  L +  +  +
Sbjct: 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLL 201

Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGV 328
           LK+++ G++ +  G++ TL     G    +E D V+ +AG  P T     AGL +++ G 
Sbjct: 202 LKSQLQGLEKTDSGIRATL---DSGRS--IEVDAVIAAAGLRPNTALARRAGLAVNR-G- 254

Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDV--IPGPMLA 362
                  I V+    T+ P +YA+GD   I G +L 
Sbjct: 255 -------IVVDSYLQTSAPDIYALGDCAEINGQVLP 283

Length = 377

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 91/345 (26%), Positives = 141/345 (40%), Gaps = 74/345 (21%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV++IG GP G   AI+A + GL    IEK           G +     ++S + Y   M
Sbjct: 1   DVIIIGAGPCGLACAIEAQKAGLSYLIIEK-----------GNL-----VNSIYRYPTNM 44

Query: 105 HSFASHGVKFSSVEV----DLPAMMAQKDKAVSNLT----RGIEGLFKKN-----KVTYV 151
             F      FS+ E      +P  +++  K   N      R +   FK N     +V  V
Sbjct: 45  T-F------FSTSERLEIGGIP-FISENPKPTRNEALEYYRRVAERFKLNIRLYEEVLKV 96

Query: 152 KGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKSLPGITIDEKRIVSSTGALA 209
           K   G F          +       + KN+I+ATG  D+ +L  +  ++   VS     A
Sbjct: 97  KKTDGGF---------EVTTEKGTYQAKNVIVATGYYDIPNLLNVPGEDLPKVSHYYKEA 147

Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWA-----RLGSEVTVVEFAADIVPSMDGEIRKQFQRS 264
                +K+VV+G         +V A     R G+EVT+V    ++  S+   +R   +  
Sbjct: 148 HPYFGQKVVVVGGSN-----SAVDAALELYRKGAEVTMVHRGDEVSSSVKYWVRPDIENR 202

Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP---FTAGL 321
           +++  +K    ++V  +        +TLE    GE   +  D V    G  P   F    
Sbjct: 203 IKEGSIKAYFNSRVKEITED----SVTLE-TPDGEVHTIPNDFVFALTGYRPDFEF---- 253

Query: 322 GLDKIGVETDKMGRIPV--NERFATNIPGVYAIGDVIPGPMLAHK 364
            L+ +GVE D+   IPV   E   TN+PG+Y  G VI   M  +K
Sbjct: 254 -LESLGVELDEDTGIPVYNPETMETNVPGLYLAG-VIAAGMDTNK 296

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 11/142 (7%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
            K +V+GAGYI LE+       G   T++  +  I   MD ++ +     L+K+++ + L
Sbjct: 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208

Query: 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
             ++  ++    G ++T +  +G  +     D+++   G  P +  +  +   ++ D  G
Sbjct: 209 NEEIDAIN----GNEVTFK--SGKVEHY---DMIIEGVGTHPNSKFI--ESSNIKLDDKG 257

Query: 335 RIPVNERFATNIPGVYAIGDVI 356
            IPVN++F TN+P +YAIGD+I
Sbjct: 258 FIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 93/360 (25%), Positives = 144/360 (40%), Gaps = 81/360 (22%)

Query: 127 QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---ISPSEVSVDTIEGGNTVVKGKNIIIA 183
             +K   +++      +++N +T   G  +    I  +   V T + G TV   K +IIA
Sbjct: 53  AGEKTAEDISLNRNDWYEENGITLYTG--EKVIQIDRANKVV-TTDAGRTVSYDK-LIIA 108

Query: 184 TGSDV-------KSLPGI----TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
           TGS           LPG+    TID+         L      KK VVIG G +GLE    
Sbjct: 109 TGSYPFILPIPGSDLPGVFVYRTIDD-----VEAMLDCARNKKKAVVIGGGLLGLEAARG 163

Query: 233 WARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291
              LG EVTVV  A  ++   +D    +  +R LE   +K +L+      ++ G+     
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNT--EEIVGEDKVEG 221

Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGR-IPVNERFATNIPGV 349
           +  A G   T + AD+V+++ G  P       D++  E    + R I VN+   T+ P +
Sbjct: 222 VRFADG---TEIPADLVVMAVGIRPN------DELAKEAGLAVNRGIVVNDYMQTSDPDI 272

Query: 350 YAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV---YTHPEVAS---VGK 403
           YA+G+                 C E            KV G+V   Y   +V +    G 
Sbjct: 273 YAVGE-----------------CAEH---------RGKVYGLVAPLYEQAKVLADHLCGG 306

Query: 404 TEE---------QVKELGVE-YRVGKFPFLANSRAKAIDDA-EGIVKILAEKETDKILGV 452
             E         ++K  GV+ +  G F     + +    D   GI K L  K+ DKI+G 
Sbjct: 307 EAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKD-DKIVGA 365

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 70.6 bits (173), Expect = 7e-13
 Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 62/298 (20%)

Query: 180 IIIATGSDVKSLPGITIDEK-----RIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSVW 233
           +I+ATGS    LP    D+K     R +    A+ A+ +  KK  VIG G +GLE     
Sbjct: 100 LILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGL 159

Query: 234 ARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
             LG +V+V+  A  ++   +D    +  QR LE++ + F+L+     V++ G      +
Sbjct: 160 QNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDT--VEIVGATKADRI 217

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET--DKMGRIPVNERFATNIPGVY 350
               G   + LEAD+++++AG  P       D++ V         I VN+   T+ P +Y
Sbjct: 218 RFKDG---SSLEADLIVMAAGIRP------NDELAVSAGIKVNRGIIVNDSMQTSDPDIY 268

Query: 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASV----GKTEE 406
           A+G+          AE +G          +G V     P   Y   +V +      + EE
Sbjct: 269 AVGEC---------AEHNGRV--------YGLV----APL--YEQAKVLADHICGVECEE 305

Query: 407 --------QVKELGVEYRVGKF-PFLANSRAKAI---DDAEGIVKILAEKETDKILGV 452
                   ++K LGV+  V          R  +I   D+ +GI K L   + DK+LG 
Sbjct: 306 YEGSDLSAKLKLLGVD--VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSD-DKLLGA 360

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 93/370 (25%)

Query: 46  VVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
           +V++GGG GG  AA + A+    ++ T +++                       H++   
Sbjct: 6   IVILGGGFGGLSAAKRLARKLPDVEITLVDR--------------------RDYHLFTPL 45

Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGL-FKKNKVTYVKGYGKFISPSE 162
           ++  A+  +  S + + L A+  +K   V  +   +  +     KVT            E
Sbjct: 46  LYEVATGTLSESEIAIPLRAL-LRKSGNVQFVQGEVTDIDRDAKKVTLADL-------GE 97

Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI-----------TIDE-----KRIVSSTG 206
           +S D +            ++A GS   +  GI           T+++     + ++ +  
Sbjct: 98  ISYDYL------------VVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFE 144

Query: 207 ALALNEVPKKL---VVIGAGYIGLEM-GSVWARLGS------------EVTVVEFAADIV 250
             +  E  + L   V++G G  G+E+ G +  RL               V +VE    I+
Sbjct: 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204

Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
           P    ++ K  +R+LEK  ++ +L T V  V    DGV L       GE+ I  AD V+ 
Sbjct: 205 PMFPPKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTL-----KDGEEEI-PADTVVW 256

Query: 311 SAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDV------IPGPMLAH 363
           +AG       L  D  G+ETD+ GR+ VN        P ++A GD        P P  A 
Sbjct: 257 AAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQ 314

Query: 364 KAEEDGVACV 373
            A + G    
Sbjct: 315 AAHQQGEYAA 324

Length = 405

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 85/362 (23%), Positives = 126/362 (34%), Gaps = 101/362 (27%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
           S  + V VIG GP G  A    A+ G   T  EK+   GG   N+  IP           
Sbjct: 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IP----------- 581

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KF-- 157
                            E  + A   QKD                  +  VK +G +F  
Sbjct: 582 -----------------EFRISAESIQKD------------------IELVKFHGVEFKY 606

Query: 158 -ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALA------- 209
             SP +++V  ++        K +I+A G+       +    +R++ S   L        
Sbjct: 607 GCSP-DLTVAELKNQGY----KYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPT 661

Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-------VPSMDGEIRKQFQ 262
           +N + K +VV+G G   ++     AR    V  VE    +       +P+   E+ +  +
Sbjct: 662 INPLGKHVVVVGGGNTAMDA----ARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717

Query: 263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE--------------PAAGGEKTILEADVV 308
              +    K +L         S +   LT E              P   GE   L AD V
Sbjct: 718 ---DGVDFKELLSP------ESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTV 768

Query: 309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPMLAHKAEE 367
           + + G    T  L   K G+  D+ G   VN     TNI  V+ IGD   GP    +A  
Sbjct: 769 IAAVGEQVDTDLL--QKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIA 826

Query: 368 DG 369
           DG
Sbjct: 827 DG 828

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 13/175 (7%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--VPSMDGEIRKQFQRSLEKQKM-- 270
           KK+VV+GAG   ++       LG+E   + +   I   P+   EI +   R +E  ++  
Sbjct: 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVT 232

Query: 271 --KFMLKTKVVGVDLS------GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322
             + + + +V GV+L+       D           G + +LEAD V+ + G  P T    
Sbjct: 233 PVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TPPFA 291

Query: 323 LDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377
            + +G+E ++ G I V+E+  T+  GV+A GDV+ GP    KA + G+   + + 
Sbjct: 292 KECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIH 346

Length = 352

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          DVVV+GGGP G  AAI AA+LG K   +E+RG LGG 
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGM 37

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 84/343 (24%), Positives = 122/343 (35%), Gaps = 94/343 (27%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+++IGGGP G  A I A +  L T  IEK    GG                        
Sbjct: 6   DLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQ----------------------- 41

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFISPSEV 163
                  +  +S  V+ P ++      +    R              + +G KF+    +
Sbjct: 42  -------ITITSEVVNYPGILNTTGPELMQEMR-----------QQAQDFGVKFLQAEVL 83

Query: 164 SVD------TIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVSS---------TG 206
            VD      TI+      K   ++IATG+  + L  PG      R V+          TG
Sbjct: 84  DVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTG 143

Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ 262
                     + VIG G+   E      R  S+VTV+    +F    + +         +
Sbjct: 144 --------MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIA---------E 186

Query: 263 RSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADV------VLVSAGR 314
           +     K++    T++     +GD             GE T  +A        V V  G 
Sbjct: 187 KVKNHPKIEVKFNTELKEA--TGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244

Query: 315 TPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
            P +    L K  VE DK G IP NE   TN+PGVYA GD+ P
Sbjct: 245 APSSE---LFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRP 284

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 180 IIIATGSDVKSLPGITIDEKRIVS---STGALALNEVPKK---LVVIGAGYIGLEMGSVW 233
           + IATG+  + LP +    +R  +   +  A  L EV +    +V++GAG IGLE+ +  
Sbjct: 104 LFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASA 163

Query: 234 ARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTL 292
            +   +VTV+E AA ++        +++     +Q  ++ +L   +  V + G+ V+LTL
Sbjct: 164 TQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHV-VDGEKVELTL 222

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
           +    GE     ADVV+   G       L  +   ++T     I ++E   T  P ++A 
Sbjct: 223 QS---GETLQ--ADVVIYGIG-ISANDQLAREA-NLDTA--NGIVIDEACRTCDPAIFAG 273

Query: 353 GDV 355
           GDV
Sbjct: 274 GDV 276

Length = 396

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
              K +VVIG G   ++      RLG+EV  +        +   E     +   E  K  
Sbjct: 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEE--EGVKFH 327

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPA---------------AGGEKTILEADVVLVSAGRTP 316
           F+ +   +  D  G+   +                     G  +  LEAD V+V+ G   
Sbjct: 328 FLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGS 387

Query: 317 FTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
               +  +   ++T + G I V+E   T+IPGV+A GD+I G
Sbjct: 388 --NPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILG 427

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA- 103
           DV+VIGGG  G  AA+ AA++G K   I        T   + C PS   +   H+  E  
Sbjct: 1   DVIVIGGGHAGCEAALAAARMGAKVLLI---THNTDTIAELSCNPSIGGIAKGHLVREID 57

Query: 104 -----MHSFA-SHGVKFSSV-EVDLPAMMA---QKDKA--VSNLTRGIEGLFKKNKVTYV 151
                M   A   G++F  +     PA+ A   Q D+      +T  +E       +T +
Sbjct: 58  ALGGLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRDLYSKEMTETLENH---PNLTLI 114

Query: 152 KGYGKFISPSEVSVDTIEG-GNTVVKGKNIIIATGSDVKSLPGI 194
           +G    + P    V  +        K K +++ATG+ +     I
Sbjct: 115 QGEVTDLIPENGKVKGVVTEDGEEYKAKAVVLATGTFLNGKIHI 158

Length = 391

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 55.9 bits (136), Expect = 2e-08
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATNIPGVYA 351
           EP  G E  +L AD+VL++ G T   AGL L + GVE D+ GR+   +  + T+ P V+A
Sbjct: 378 EPVEGSEF-VLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFA 435

Query: 352 IGDVIPGPMLAHKAEEDG----VACVEFLAGK 379
            GD+  G  L   A  +G     A   +L G 
Sbjct: 436 AGDMRRGQSLVVWAIAEGRQAARAIDAYLMGS 467

Length = 471

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 30/212 (14%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
           DV +IG G  G  AA    Q G+      EKR  +GGT       P   L     +    
Sbjct: 10  DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-WRYNRYPGLRLDSPKWLLG-- 66

Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-----TRGIEGLFKKNKVTYVKGYGKFI 158
              F          +         KD     L        I    +     + +   ++ 
Sbjct: 67  -FPFLP-----FRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRW- 119

Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSD----VKSLPGITIDEKRIVSS---TGALALN 211
                +V T +GG   +    +++ATG      +    G+   + RI+ S        L 
Sbjct: 120 -----TVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDL- 173

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 243
              K+++VIGAG   +++    A +G+ VT+ 
Sbjct: 174 -RGKRVLVIGAGASAVDIAPELAEVGASVTLS 204

Length = 443

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 53.2 bits (129), Expect = 2e-07
 Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 29/152 (19%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRSLEKQK- 269
           K++ VIG G  G+E     A +   VTV+EFA    AD V           Q  L     
Sbjct: 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQV----------LQDKLRSLPN 401

Query: 270 ---MKFMLKTKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
              +     T+V      GDG K   LT +    GE+  LE + V V  G  P T  L  
Sbjct: 402 VTIITNAQTTEVT-----GDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL-- 454

Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
            K  VE ++ G I V+ R AT++PGV+A GD 
Sbjct: 455 -KGTVELNRRGEIIVDARGATSVPGVFAAGDC 485

Length = 517

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 20/148 (13%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRSLEKQKM 270
           K+  V+G G +GLE       LG E  V+EFA    A+ +  M GE   Q +R +E   +
Sbjct: 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGE---QLRRKIESMGV 202

Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI---- 326
           +       + +   G   + T+  A G E   LE D ++ S G  P       DK+    
Sbjct: 203 RVHTSKNTLEIVQEGVEARKTMRFADGSE---LEVDFIVFSTGIRP------QDKLATQC 253

Query: 327 GVETDKMGRIPVNERFATNIPGVYAIGD 354
           G+     G I +N+   T+ P +YAIG+
Sbjct: 254 GLAVAPRGGIVINDSCQTSDPDIYAIGE 281

Length = 847

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 65/350 (18%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS----KALLHSSHMYH 101
           V VIG GP G   A   A+ G++    ++   +GG  L  G IPS    KA+L       
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL-LTFG-IPSFKLDKAVLSRRREIF 201

Query: 102 EAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
            AM      G++F  + EV        +D ++ +L    + +F     TY    G    P
Sbjct: 202 TAM------GIEFHLNCEVG-------RDISLDDLLEDYDAVFL-GVGTYRSMRGGL--P 245

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
            E           V++    +IA    +  LP     E+ ++   G        K++VV+
Sbjct: 246 GE-------DAPGVLQALPFLIANTRQLMGLP--ESPEEPLIDVEG--------KRVVVL 288

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           G G   ++      RLG+      +  D   +M G  R++   + E + ++F+   + V 
Sbjct: 289 GGGDTAMDCVRTAIRLGAASVTCAYRRDEA-NMPGS-RREVANARE-EGVEFLFNVQPVY 345

Query: 281 VDLSGD----GVKLTL----EPAAGGEKT---------ILEADVVLVSAGRTPFTAGLGL 323
           ++   D    GV L      EP A G +          +L ADVV+++ G  P      L
Sbjct: 346 IECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-L 404

Query: 324 DKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDG 369
              G+  D  GRI   +     + T  P ++A GD + G  L   A  +G
Sbjct: 405 AGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEG 454

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          DVVVIG G  G  AA   A+ GLK T +EK   +GG
Sbjct: 5  DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40

Length = 487

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          DVVVIG G  G  AA++AA+ GLK   +EK    GG 
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 49.0 bits (118), Expect = 3e-06
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 46/175 (26%)

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSE-VTVV---------------EFAADIVPSMDG- 255
           V K++VVIG G   ++      RLG+E VT+V               E A +     +G 
Sbjct: 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKE-----EGV 326

Query: 256 EIR--KQFQRSLEKQK----MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309
           E          L  +     ++F ++ ++   D SG        P  G E T L AD+V+
Sbjct: 327 EFEWLAAPVEILGDEGRVTGVEF-VRMELGEPDASGRRR----VPIEGSEFT-LPADLVI 380

Query: 310 VSAGRTPF------TAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
            + G+TP       T GL L++ G        I  +E   T++PGV+A GD++ G
Sbjct: 381 KAIGQTPNPLILSTTPGLELNRWG------TIIADDETGRTSLPGVFAGGDIVTG 429

Length = 457

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 35/170 (20%)

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVV------EFAADIVPSMDGEIRKQFQRSLE 266
           V KK+ V+G G + ++      RLG+EV +V      E  A          R +     +
Sbjct: 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----------RVEEVHHAK 329

Query: 267 KQKMKFMLKTKVVGVDLSGDG-------VKLTL-EPAAGG---------EKTILEADVVL 309
           ++ + F L T  V +    +G       +K+ L EP A G          + +LE D V+
Sbjct: 330 EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVI 389

Query: 310 VSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVIPG 358
           +S G +P        K G++ +K G I  +E    T+  GV+A GD + G
Sbjct: 390 MSLGTSPNPLISSTTK-GLKINKRGCIVADEETGLTSKEGVFAGGDAVTG 438

Length = 464

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 20/157 (12%)

Query: 207 ALALNEVPKKLVVIGAGYIGLEM-GSVWARLGS-----EVTVVEFAADIVPSMDGEIRKQ 260
           +       K+L V+G G  G+E+  ++  RL       +VT++   A ++P    ++R+ 
Sbjct: 138 SADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPGFPAKVRRL 196

Query: 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320
             R L ++ ++      V         + L        +   L AD +L + G       
Sbjct: 197 VLRLLARRGIEVHEGAPVTRG--PDGALIL-------ADGRTLPADAILWATGARAPPW- 246

Query: 321 LGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVI 356
             L + G+  D+ G + V+    + + P V+A GD  
Sbjct: 247 --LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCA 281

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 20/41 (48%), Positives = 23/41 (56%)

Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
            E DVVVIGGG  G  AAI+AA+ GLK   + K     G 
Sbjct: 4  IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44

Length = 562

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79
            E DVV++G GP G  AA + A+ GL    +EK    G
Sbjct: 1  MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39

Length = 396

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYA 351
               G EKT   AD V+++ G         L + G++ DK GRI V+E    T+IPGV+A
Sbjct: 363 VGVIGTEKTD-AADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFA 421

Query: 352 IGDVIPGPMLAHKAEEDGVACVEF 375
            GD + G  L   A  +G    + 
Sbjct: 422 GGDAVRGAALVVWAIAEGREAAKA 445

Length = 457

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79
          DV+VIGGG  G +AAI AA+ G +   I+K   LG
Sbjct: 2  DVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLG 36

Length = 405

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 48/203 (23%)

Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE---------- 239
           SLP  +++E++ +               VV+G G  G+E  +  A    +          
Sbjct: 161 SLPTTSVEERKRLLHF------------VVVGGGPTGVEFAAELADFFRDDVRNLNPELV 208

Query: 240 ----VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA 295
               VTV+E  ++++ S D  +RK  QR L +  +    KT V  V      V L     
Sbjct: 209 EECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEV--LDKEVVLK---- 262

Query: 296 AGGEKTILEADVVLVSAG--RTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAI 352
             GE  ++   +V+ S G    P T  L +DK        GRI V++      IP V+A+
Sbjct: 263 -DGE--VIPTGLVVWSTGVGPGPLTKQLKVDK-----TSRGRISVDDHLRVKPIPNVFAL 314

Query: 353 GDV-----IPGPMLAHKAEEDGV 370
           GD       P P LA  A + GV
Sbjct: 315 GDCAANEERPLPTLAQVASQQGV 337

Length = 424

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          E DV ++G GP G  AA   A+ GLK    E++ + GG
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLG-SEVTVV-EFAADIVPSMDGEIRKQFQRSLEKQKM 270
           + K++VVIG G   ++      RLG  EVT+V     + +P+ D EI +  +   E  ++
Sbjct: 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALR---EGVEI 322

Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAG------------GEKTILEADVVLVSAGRTPFT 318
            ++     +  D +G      +                 GE+  LEAD+V+++ G+   +
Sbjct: 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS 382

Query: 319 AGLGLDKIGVETDKMGRIPVNERFA-TNIPGVYAIGDVIPGPMLAHKA 365
           AGL  + +       G + V+  F  T  PGV+A GD++PGP     A
Sbjct: 383 AGL--ESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTA 428

Length = 564

>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 21/45 (46%), Positives = 25/45 (55%)

Query: 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
           A    E DVVV+G G  G VAA+ AA  GL T  +EK    GG+
Sbjct: 1  MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45

Length = 557

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 81/341 (23%), Positives = 126/341 (36%), Gaps = 69/341 (20%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V + G GP G  AA    + G+  T  E    +GG  L  G IPS  L     +    + 
Sbjct: 433 VAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-LQYG-IPSFRL--PRDIIDREVQ 488

Query: 106 SFASHGVKFSSVEV-----DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
                GVK  + +V      +P +M           +G + +F    +    G   F+  
Sbjct: 489 RLVDIGVKIETNKVIGKTFTVPQLMND---------KGFDAVF----LGVGAGAPTFLGI 535

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
                  +   N  +   N++   G D        I                + K +VVI
Sbjct: 536 PGEFAGQVYSANEFLTRVNLM---GGDKFPFLDTPI---------------SLGKSVVVI 577

Query: 221 GAGYIGLEMGSVWARLGSEVT--VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
           GAG   ++   V  RLG+     V   +    P+   EIR   +  ++     F L + V
Sbjct: 578 GAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDF----FFLHSPV 633

Query: 279 -VGVDLSGD--GVKLT------------LEPAAGGEKTILEADVVLVSAGRTP------F 317
            + VD  G   G+K+              +P   GE   LE D V+ + G          
Sbjct: 634 EIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQS 693

Query: 318 TAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
           T GL L+K G      G++   +  +TN+PGV+A GD++ G
Sbjct: 694 TPGLALNKWGNIAADDGKLESTQ--STNLPGVFAGGDIVTG 732

Length = 1006

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 28/175 (16%)

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLG------SEVTVV--EFAADIVPSMDGEIRKQFQR 263
           ++P+ LVVIG G + +++    ARL         V V   E   + +P+   EI +  + 
Sbjct: 416 KIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEE 475

Query: 264 SL-------------EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG-GEKTILEADVVL 309
            +             E  K+K +   K V V    +G      P     ++ I+EAD+V+
Sbjct: 476 GVVIYPGWGPMEVVIENDKVKGVKFKKCVEV-FDEEG---RFNPKFDESDQIIVEADMVV 531

Query: 310 VSAGRTPFTAGLGLD-KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
            + G+ P  + L  + K  +E  + GRI  NE   T+IP ++A GD++ GP + H
Sbjct: 532 EAIGQAPDYSYLPEELKSKLEFVR-GRILTNEYGQTSIPWLFAGGDIVHGPDIIH 585

Length = 604

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
               E DV+VIG G  G  AA+ AA  GLK   +E+   +GGT
Sbjct: 11 ERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54

Length = 578

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 80/303 (26%)

Query: 47  VVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNV--GCIPSKALLHS 96
           ++IGGG  G +AAI AA+ GL    +EK   +G        G C N+   C   + + + 
Sbjct: 1   IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRC-NLTNSCPTPEFVAYY 59

Query: 97  SHMYHEAMHSFASHGVK-----FSSVEVDLPA-----MMAQKDKAVSNLTRGIEGLFKKN 146
                    + +    K     F S+ ++L       +    D A +++   +    K+ 
Sbjct: 60  PRNGKFLRSALSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSA-ADVLDALLNELKEL 118

Query: 147 KV-----TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATG--------SD------ 187
            V     + VK     I   +     +E      +   +IIATG        S       
Sbjct: 119 GVEILTNSKVKS----IKKDDGGFG-VETSGGEYEADKVIIATGGLSYPQLGSTGDGYEI 173

Query: 188 -----------VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG---------- 226
                      V +L  +T+DE  +   +G ++L+ V    +V G   +           
Sbjct: 174 AESLGHTIVPPVPALVPLTLDESFLKELSG-ISLDGV-VLSLVNGKKVLEEFGDLLFTHF 231

Query: 227 -------LEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQRSLE---KQKMKFMLK 275
                  L++ +  AR   +   VE   D++P +   E+ ++ +R  +   K+ +K +LK
Sbjct: 232 GLSGPAILDLSAFAARALLKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILK 291

Query: 276 TKV 278
             +
Sbjct: 292 GLL 294

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
            V+VIGGG  G  AA++ A +G K   +EK  ++GG 
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162

Length = 622

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 24/44 (54%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
           +     DV+VIG G GG  AAI A +LGL    +EK    GGT
Sbjct: 4  MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47

Length = 574

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82
          ++G G  G VAA   A+ G     +EKR  +GG  
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNA 35

Length = 66

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          E DV+VIG G  G  AA+ AA  GLK   +EK    GGT
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50

Length = 581

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79
          DV++IGGGP G +AAI AA+ G +   I+K   LG
Sbjct: 5  DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39

Length = 408

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          E+DV+++G GP G  AA   A+ GLK    E++ + GG
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          DVVV+G G GG  AA+ AA  GL+   +EK+  +GG+
Sbjct: 8  DVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44

Length = 557

>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCI 88
          DV+V+G G GG  AA+ AA  GL T  +EK    GG T L+ G I
Sbjct: 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGI 57

Length = 584

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
           V+V+GGGP G  AA  AA+ G + T  E+   LGG
Sbjct: 382 VLVVGGGPAGLEAAATAARRGHRVTLFEREDRLGG 416

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 25/163 (15%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVV-EFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
           KK+ V+G G   ++      RLG+E VT+V   + + +P+     R +  +  +++ ++F
Sbjct: 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-----RLEEVKHAKEEGIEF 625

Query: 273 MLKTKVVGVDLSGDG-------VKLTL-EPAAGGEKT---------ILEADVVLVSAGRT 315
           +     +       G        K+ L EP A G +           ++ D+V+VS G +
Sbjct: 626 LTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685

Query: 316 PFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
           P          G+E ++ G I V+E   ++IPG+YA GD++ G
Sbjct: 686 PNPLVPSSIP-GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727

Length = 752

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
           VVIG G GG   AI+ A  G+  T +E+R   GG
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
           DE DVVV+G G  G  AAI+AA  G +   +E+    GG 
Sbjct: 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58

Length = 492

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCI-EKRGAL 78
          DV+VIGGG  G  AA+ AA+ G +   + + +GAL
Sbjct: 4  DVLVIGGGLAGLTAALAAAEAGKRVALVAKGQGAL 38

Length = 422

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 18/36 (50%), Positives = 21/36 (58%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          DVVV+G G GG  AA+ AA  G K   +EK    GG
Sbjct: 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45

Length = 572

>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 81/348 (23%), Positives = 134/348 (38%), Gaps = 61/348 (17%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V VIG GP G   A   A+ G++    ++   +GG  L  G  P K       +  +   
Sbjct: 313 VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFGIPPFKL---DKTVLSQRRE 368

Query: 106 SFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
            F + G+ F  + E+        +D   S+LT   + +F       V  YG   +     
Sbjct: 369 IFTAMGIDFHLNCEIG-------RDITFSDLTSEYDAVF-----IGVGTYGMMRADLPH- 415

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
               E    V++    + A    +  LP    +E  +    G        K++VV+G G 
Sbjct: 416 ----EDAPGVIQALPFLTAHTRQLMGLP--ESEEYPLTDVEG--------KRVVVLGGGD 461

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRK---------QFQRSLEKQKMKFMLK 275
             ++      RL +      +  D V SM G  ++         +FQ +++ Q +     
Sbjct: 462 TTMDCLRTSIRLNAASVTCAYRRDEV-SMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 520

Query: 276 TKVVGVDL-------SGDGVKLTLEPAAGGEKTILEADVVLVSAG----RTPFTAGLG-- 322
            ++  V L        G   +    P AG E   L ADV++++ G      P+  G G  
Sbjct: 521 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFE-LPADVLIMAFGFQAHAMPWLQGSGIK 579

Query: 323 LDKIG-VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG 369
           LDK G ++T  +G +P      T++  V+A GD + G  L   A   G
Sbjct: 580 LDKWGLIQTGDVGYLPTQ----THLKKVFAGGDAVHGADLVVTAMAAG 623

Length = 639

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
           +A D  DV+V+GGGP G  AAI AA+ G++T  + +R   GG
Sbjct: 207 NAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGG 246

Length = 517

>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH--SSHMYH 101
           D +++G G  G V A   AQL  +   +EKR  +GG C +        L H    H++H
Sbjct: 3   DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVD--ETILFHQYGPHIFH 59

This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77
          DV ++G GP G   A+  A+ GL  T +E+   
Sbjct: 4  DVAIVGAGPAGLALALALARAGLDVTLLERAPR 36

Length = 387

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          E+DVV++G GP G  AA   A+ GLK   IE+  + GG
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54

This family includes a putative thiamine biosynthetic enzyme. Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PLN02507	499	glutathione reductase	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PLN02546	558	glutathione reductase	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.98
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.98
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.98
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.97
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.97
PLN02852	491	ferredoxin-NADP+ reductase	99.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.96
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.96
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.96
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.95
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.95
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.95
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.94
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.9
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.88
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.85
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.83
KOG2755	334	consensus Oxidoreductase [General function predict	99.83
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.82
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.82
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.81
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.8
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.79
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.78
PTZ00188	506	adrenodoxin reductase; Provisional	99.77
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.75
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.75
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.74
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	99.74
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.69
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.67
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.48
COG2081	408	Predicted flavoproteins [General function predicti	99.41
PRK08401	466	L-aspartate oxidase; Provisional	99.41
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.38
PRK09897	534	hypothetical protein; Provisional	99.36
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.35
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.34
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.34
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PRK08275	554	putative oxidoreductase; Provisional	99.32
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.28
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.27
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.26
PRK09077	536	L-aspartate oxidase; Provisional	99.24
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.24
PRK07804	541	L-aspartate oxidase; Provisional	99.23
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.23
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.21
PRK08071	510	L-aspartate oxidase; Provisional	99.21
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.21
PRK07395	553	L-aspartate oxidase; Provisional	99.2
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.2
PRK06175	433	L-aspartate oxidase; Provisional	99.18
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.17
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.16
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.15
PLN02815	594	L-aspartate oxidase	99.15
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.15
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.15
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.11
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.1
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	99.1
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.08
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.05
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.0
PRK07512	513	L-aspartate oxidase; Provisional	99.0
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.96
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.94
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.93
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.91
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.9
PLN02463	447	lycopene beta cyclase	98.9
PRK08163	396	salicylate hydroxylase; Provisional	98.88
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.88
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.87
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.86
PLN02661	357	Putative thiazole synthesis	98.85
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.85
PRK10015	429	oxidoreductase; Provisional	98.85
PRK06847	375	hypothetical protein; Provisional	98.84
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.84
PRK08274	466	tricarballylate dehydrogenase; Validated	98.84
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.83
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.83
PRK10157	428	putative oxidoreductase FixC; Provisional	98.83
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.82
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.82
COG0579	429	Predicted dehydrogenase [General function predicti	98.8
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.78
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.78
PRK06184	502	hypothetical protein; Provisional	98.77
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.77
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.77
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.77
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.77
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.77
PRK06834	488	hypothetical protein; Provisional	98.76
PRK09126	392	hypothetical protein; Provisional	98.76
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.76
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.76
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.74
PRK07121	492	hypothetical protein; Validated	98.72
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.72
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.72
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.72
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.71
PLN02697	529	lycopene epsilon cyclase	98.7
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.69
PRK08013	400	oxidoreductase; Provisional	98.69
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.69
PRK07190	487	hypothetical protein; Provisional	98.68
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.68
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.67
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.66
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.66
PRK12839	572	hypothetical protein; Provisional	98.66
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.66
PRK06126	545	hypothetical protein; Provisional	98.66
PRK07588	391	hypothetical protein; Provisional	98.65
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.65
PRK05257	494	malate:quinone oxidoreductase; Validated	98.64
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.64
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.62
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.62
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.62
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.61
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.61
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.61
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.6
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.6
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.59
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.58
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.57
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.57
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.57
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.57
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.56
PRK11445	351	putative oxidoreductase; Provisional	98.55
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.54
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.54
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.54
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.53
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.53
PRK08244	493	hypothetical protein; Provisional	98.53
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.52
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.52
PRK06475	400	salicylate hydroxylase; Provisional	98.5
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.5
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.5
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.49
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.46
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.45
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.44
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.44
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.43
PRK06185	407	hypothetical protein; Provisional	98.43
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.43
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.42
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.42
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.42
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.42
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.42
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.41
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.41
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.41
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.4
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.39
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.39
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.38
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.38
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.38
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.37
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.37
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.37
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.37
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.36
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.35
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.35
PRK06996	398	hypothetical protein; Provisional	98.34
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.33
PRK07236	386	hypothetical protein; Provisional	98.33
PRK06753	373	hypothetical protein; Provisional	98.32
PRK08294	634	phenol 2-monooxygenase; Provisional	98.32
PLN02985	514	squalene monooxygenase	98.31
PRK07208	479	hypothetical protein; Provisional	98.31
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.28
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.27
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.27
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.26
PRK07236	386	hypothetical protein; Provisional	98.25
PRK06834	488	hypothetical protein; Provisional	98.25
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.25
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.24
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.22
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.21
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.21
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.17
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.17
PRK05868	372	hypothetical protein; Validated	98.17
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.17
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	98.16
PRK08244	493	hypothetical protein; Provisional	98.16
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.13
PLN02568	539	polyamine oxidase	98.13
PRK10262	321	thioredoxin reductase; Provisional	98.13
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.13
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.12
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.12
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.12
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.12
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.12
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.12
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.11
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.11
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.11
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.1
PLN02268	435	probable polyamine oxidase	98.1
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.1
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.1
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.1
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.1
PLN02576	496	protoporphyrinogen oxidase	98.1
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.09
PTZ00367	567	squalene epoxidase; Provisional	98.09
COG3349	485	Uncharacterized conserved protein [Function unknow	98.09
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.08
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.08
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.08
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.07
PLN02529	738	lysine-specific histone demethylase 1	98.07
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.06
PRK07233	434	hypothetical protein; Provisional	98.06
PRK05868	372	hypothetical protein; Validated	98.05
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.04
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.04
PRK07045	388	putative monooxygenase; Reviewed	98.04
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.04
PLN02463	447	lycopene beta cyclase	98.04
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.03
PLN02661	357	Putative thiazole synthesis	98.03
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.02
PRK07190	487	hypothetical protein; Provisional	98.02
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.02
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.02
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.01
PRK10157	428	putative oxidoreductase FixC; Provisional	98.01
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.01
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.01
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.99
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.99
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.99
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.98
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.97
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.96
PRK06370	463	mercuric reductase; Validated	97.95
TIGR02053	463	MerA mercuric reductase. This model represents the	97.94
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.94
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.94
PRK06753	373	hypothetical protein; Provisional	97.93
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.93
PRK06116	450	glutathione reductase; Validated	97.92
PRK07538	413	hypothetical protein; Provisional	97.92
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.9
KOG2853	509	consensus Possible oxidoreductase [General functio	97.89
PLN02507	499	glutathione reductase	97.89
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.89
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.88
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.88
PRK12831	464	putative oxidoreductase; Provisional	97.86
PRK07846	451	mycothione reductase; Reviewed	97.86
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.85
PRK14694	468	putative mercuric reductase; Provisional	97.85
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.84
PLN02852	491	ferredoxin-NADP+ reductase	97.84
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.84
PLN02676	487	polyamine oxidase	97.83
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.83
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.83
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.83
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.82
PRK09897	534	hypothetical protein; Provisional	97.81
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.8
PRK07045	388	putative monooxygenase; Reviewed	97.79
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.78
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.78
PRK14727	479	putative mercuric reductase; Provisional	97.78
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.78
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.78
PLN02697	529	lycopene epsilon cyclase	97.77
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.77
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.76
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.75
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.75
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.75
PTZ00052	499	thioredoxin reductase; Provisional	97.74
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.74
PTZ00188	506	adrenodoxin reductase; Provisional	97.74
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.74
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.73
PLN02612	567	phytoene desaturase	97.73
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.73
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.73
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.73
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.73
PRK07538	413	hypothetical protein; Provisional	97.72
PLN02487	569	zeta-carotene desaturase	97.72
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.71
PRK06996	398	hypothetical protein; Provisional	97.7
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.7
PRK13748	561	putative mercuric reductase; Provisional	97.68
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.68
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.67
PTZ00058	561	glutathione reductase; Provisional	97.67
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.66
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.64
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.64
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.62
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.62
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.61
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.59
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.59
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.58
PLN02546	558	glutathione reductase	97.58
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.56
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.56
PLN03000	881	amine oxidase	97.53
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.52
PRK11445	351	putative oxidoreductase; Provisional	97.52
KOG2852	380	consensus Possible oxidoreductase [General functio	97.49
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.47
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.46
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.45
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.45
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.44
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.44
PLN02976	1713	amine oxidase	97.43
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.38
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.38
PRK02106	560	choline dehydrogenase; Validated	97.38
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.37
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.36
COG3573	552	Predicted oxidoreductase [General function predict	97.35
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.32
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.32
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.32
PRK13984	604	putative oxidoreductase; Provisional	97.3
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.28
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.26
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.23
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.23
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.21
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.17
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.17
PLN02985	514	squalene monooxygenase	97.13
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.1
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.08
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.08
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.98
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.96
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.95
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.92
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.91
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.91
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.88
PRK07233	434	hypothetical protein; Provisional	96.79
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	96.76
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.75
PRK08401	466	L-aspartate oxidase; Provisional	96.72
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	96.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.67
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.65
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.65
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.62
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.61
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.61
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.59
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.57
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.57
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.55
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.53
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.47
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.46
PLN02785	587	Protein HOTHEAD	96.45
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	96.43
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.41
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.36
PRK08275	554	putative oxidoreductase; Provisional	96.35
PRK06175	433	L-aspartate oxidase; Provisional	96.34
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.3
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.26
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PRK07804	541	L-aspartate oxidase; Provisional	96.22
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.18
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.13
PTZ00367	567	squalene epoxidase; Provisional	96.09
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.02
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.01
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	95.95
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.94
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	95.93
PLN02815	594	L-aspartate oxidase	95.88
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.82
PRK08071	510	L-aspartate oxidase; Provisional	95.82
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	95.8
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.69
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.64
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.62
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.58
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	95.56
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.54
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.44
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.2
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.17
PRK09077	536	L-aspartate oxidase; Provisional	95.16
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.03
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.0
PRK06475	400	salicylate hydroxylase; Provisional	94.96
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.94
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.94
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.89
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.88
PRK06184	502	hypothetical protein; Provisional	94.85
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.82
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.76
PRK08163	396	salicylate hydroxylase; Provisional	94.72
PRK07395	553	L-aspartate oxidase; Provisional	94.72
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	94.69
PRK06847	375	hypothetical protein; Provisional	94.68

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=8.5e-80  Score=599.34  Aligned_cols=428  Identities=52%  Similarity=0.819  Sum_probs=396.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.+||++|||+||||..||.++++.|.+|++||+...+||+|+|.||+|+|.+++.+..++...+....+|+......++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id   81 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID   81 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence            45799999999999999999999999999999997799999999999999999999999888776533678887766899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~  200 (477)
                      |.++..+++...+.+......++++++|+++.|++.+++++++.|...  +.+++.++++|||||++|..+|..+.++..
T Consensus        82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~  159 (454)
T COG1249          82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPRIPPGPGIDGAR  159 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCcCCCCCCCCCCe
Confidence            999999999988888888889999999999999999999999999866  347999999999999999988877777888


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ++++++.+.+.+.|++++|||||++|+|+|..++++|.+||++++.++++|.+|+++++.+.+.|++.|+.+++++.+++
T Consensus       160 ~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~  239 (454)
T COG1249         160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA  239 (454)
T ss_pred             EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence            99998877777999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      ++..++++.+++++.   .+..+++|.+++|+|++||++.+.++++|++++++|+|.||+.++|++|+|||+|||++.|+
T Consensus       240 ~~~~~~~v~v~~~~g---~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~  316 (454)
T COG1249         240 VEKKDDGVLVTLEDG---EGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM  316 (454)
T ss_pred             EEecCCeEEEEEecC---CCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc
Confidence            988777777777632   22289999999999999999999999999999999999999778899999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcC-CCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          361 LAHKAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      ++|.|.+||++||+||++ .....++..+|+++|++|++++||+||+|+++.+++|++..+++....++....++.||+|
T Consensus       317 Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~K  396 (454)
T COG1249         317 LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVK  396 (454)
T ss_pred             cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEE
Confidence            999999999999999997 4556789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|++|++|||+|++|++|+||||++++|+.+.
T Consensus       397 lv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g  430 (454)
T COG1249         397 LVVDKETGRILGAHIVGPGASELINEIALAIEMG  430 (454)
T ss_pred             EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999854

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.6e-80  Score=558.22  Aligned_cols=439  Identities=69%  Similarity=1.084  Sum_probs=421.3

Q ss_pred             cCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHh-hhhhCC
Q 011787           33 LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-SFASHG  111 (477)
Q Consensus        33 ~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-~~~~~g  111 (477)
                      +.|.+.....+||++|||+||+|..||.++++.|++.+.||++..+||+|++.||+||+.|+..++.|+...+ .++..|
T Consensus        29 ~~r~fa~~~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rG  108 (506)
T KOG1335|consen   29 SKRSFASSANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRG  108 (506)
T ss_pred             hhhhhhccCccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcC
Confidence            3444555556899999999999999999999999999999999999999999999999999999999998887 788999


Q ss_pred             ccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC
Q 011787          112 VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL  191 (477)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~  191 (477)
                      +......++.+.++..++..+..+...++..+++++|+++.|...+++++.+.+...||+...+.++++|+||||.-.++
T Consensus       109 i~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~  188 (506)
T KOG1335|consen  109 IDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPF  188 (506)
T ss_pred             ccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCC
Confidence            99988899999999999999999999999999999999999999999999999999999889999999999999998888


Q ss_pred             CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       192 ~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      ||...++..+.++..++.+.+.|++++|+|+|.+|+|++..+.++|.+||+++-.+.+.+.+|.++++..++.|.++|+.
T Consensus       189 PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgik  268 (506)
T KOG1335|consen  189 PGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIK  268 (506)
T ss_pred             CCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787          272 FMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy  350 (477)
                      |++++.|+..+.+++ .+.+++++..++..++++||.+++++|++|.+..|++++.|++.|.+|++.||..++|.+|+||
T Consensus       269 F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~  348 (506)
T KOG1335|consen  269 FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIY  348 (506)
T ss_pred             eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceE
Confidence            999999999988766 7888888888888899999999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh
Q 011787          351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA  430 (477)
Q Consensus       351 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (477)
                      ++||+..+|++++-|..||..+.+.|.+...+++|..+|.+.|++|+++|||+||+++++.|++|++++++|+.+.|+..
T Consensus       349 ~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNsRakt  428 (506)
T KOG1335|consen  349 AIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKT  428 (506)
T ss_pred             EecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccchhhc
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787          431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH  471 (477)
Q Consensus       431 ~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~  471 (477)
                      ..+.+||+|+++|++|++|||+|++|++|+|||+++++||+
T Consensus       429 n~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAie  469 (506)
T KOG1335|consen  429 NNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIE  469 (506)
T ss_pred             cCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999997

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4e-72  Score=562.26  Aligned_cols=431  Identities=45%  Similarity=0.723  Sum_probs=387.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      |+.+|||+||||||||++||..|++.|++|+|||+++.+||+|++.+|+|++.++..+..++... .+..+|+......+
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~-~~~~~g~~~~~~~~   79 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKI   79 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHh-hhhhcCcccCCCCc
Confidence            34569999999999999999999999999999999778999999999999999998888777664 35667887766788


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK  199 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~  199 (477)
                      +|..+..+.+.....+...+...+++.+|+++.+++.+++++.+.|...+|+..++.||+||||||++|..+|+.+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~  159 (471)
T PRK06467         80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDP  159 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCC
Confidence            99999999999988888888888899999999999999999998888766644679999999999999976665554455


Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .++++.+...+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.|+++ ++++++++++
T Consensus       160 ~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~  238 (471)
T PRK06467        160 RIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVT  238 (471)
T ss_pred             cEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEE
Confidence            688888888888889999999999999999999999999999999999999999999999999999988 9999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      +++..++++.+++.+. .++.+++++|.|++++|++||++.+.++.+|++++++|+|.||+++||++|+|||+|||++.|
T Consensus       239 ~i~~~~~~~~v~~~~~-~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~  317 (471)
T PRK06467        239 AVEAKEDGIYVTMEGK-KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP  317 (471)
T ss_pred             EEEEcCCEEEEEEEeC-CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc
Confidence            9987766766665421 122467999999999999999997767888999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      .+++.|..||+.||+||++...++++...|+++|++|+++++|+||+||+..|+++.+..+++....++...++++||+|
T Consensus       318 ~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  397 (471)
T PRK06467        318 MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTK  397 (471)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEE
Confidence            99999999999999999987777888899999999999999999999999999999999999988888877778899999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|++|++|||+|++|+++.|+||.+++||.++
T Consensus       398 li~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~  431 (471)
T PRK06467        398 LIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMG  431 (471)
T ss_pred             EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=9.9e-72  Score=559.23  Aligned_cols=429  Identities=56%  Similarity=0.942  Sum_probs=384.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHh-hhhhCCccccccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-SFASHGVKFSSVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~  121 (477)
                      +|||+||||||||++||..+++.|++|+|||+++.+||+|++.+|+|+|.++.....++.... .+..+|+.. ...++|
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~~   81 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLNL   81 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccCH
Confidence            599999999999999999999999999999987889999999999999999998887765543 345667754 347899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      .++..+.+..+..+...+...+++.+++++.+++.+.+++++.|...+|+..+++||+||||||++|+.+|++..++..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~  161 (466)
T PRK06115         82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRI  161 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence            99999999998888888888888899999999999888888888777765457999999999999998788876566678


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +++.+...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+++.|++.||+++++++++++
T Consensus       162 ~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i  241 (466)
T PRK06115        162 IDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGA  241 (466)
T ss_pred             ECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEE
Confidence            88888887777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML  361 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~  361 (477)
                      +.+++++.+.+....+++++.+++|.|++++|++||++.+.++..++..+++| +.||+++||++|+|||+|||++.|.+
T Consensus       242 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~l  320 (466)
T PRK06115        242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPML  320 (466)
T ss_pred             EEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCccc
Confidence            87666666665433334557899999999999999999777788889888766 77999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEE
Q 011787          362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL  441 (477)
Q Consensus       362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  441 (477)
                      ++.|.+||++||+||++.....++..+|.++|++|+++++|+||+||+..|+++.++.+++....++.+.++++||+|++
T Consensus       321 a~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv  400 (466)
T PRK06115        321 AHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKIL  400 (466)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEE
Confidence            99999999999999998766678889999999999999999999999999999999999999999988888888999999


Q ss_pred             EECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          442 AEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       442 ~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|++|++|||+|++|+++.|+|+.+++||..+
T Consensus       401 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  432 (466)
T PRK06115        401 ADARTDEVLGVHMVGPSVSEMIGEFCVAMEFS  432 (466)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.5e-69  Score=543.31  Aligned_cols=428  Identities=40%  Similarity=0.670  Sum_probs=377.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+|||+||||||||++||.+|++.|++|+|||+ ..+||+|.+.+|+|++.++.....++........+|+. ....++|
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~   80 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTFDY   80 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCcccCH
Confidence            469999999999999999999999999999998 68999999999999999988777776665555566775 3456899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      ..+..+.++..+.........++..+|+.+.+.+.+++.+.+.+...+|+..+++||+||||||++|..+|+.+.. ..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~-~~v  159 (466)
T PRK07818         81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS-ENV  159 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCC-CcE
Confidence            9999998888877777777777778999999999999999998887776556899999999999999877876432 346


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      ++.++.......+++++|||+|++|+|+|..|++.|.+|+++++.++++|.+|+++...+++.|+++||+++++++|+++
T Consensus       160 ~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i  239 (466)
T PRK07818        160 VTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESI  239 (466)
T ss_pred             EchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence            67766555556789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML  361 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~  361 (477)
                      +.+++.+.+.+.. .+++..++++|.|++|+|++||++.+.+++.|+.++++|+|.||+++||++|+|||+|||++.+++
T Consensus       240 ~~~~~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l  318 (466)
T PRK07818        240 DDNGSKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQL  318 (466)
T ss_pred             EEeCCeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCccc
Confidence            8766666555532 223346899999999999999998776788999998889999999999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHcCCCC-CC-CCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          362 AHKAEEDGVACVEFLAGKHG-HV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       362 ~~~A~~~g~~aa~~i~~~~~-~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      ++.|..||++||.||++... .+ ++..+|.++|++|+++++|+||+||+..|+++.+..++++...++...++++||+|
T Consensus       319 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~K  398 (466)
T PRK07818        319 AHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVK  398 (466)
T ss_pred             HhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEE
Confidence            99999999999999998653 34 77889999999999999999999999999999999999999899888888899999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       399 lv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~  432 (466)
T PRK07818        399 LVADAKYGELLGGHLIGPDVSELLPELTLAQKWD  432 (466)
T ss_pred             EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999865

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.5e-69  Score=544.25  Aligned_cols=428  Identities=32%  Similarity=0.533  Sum_probs=379.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ++.+|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+...........+. ....+
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYR-VKLRI   80 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccC-CcCcc
Confidence            45579999999999999999999999999999999889999999999999998877666654433211111111 12357


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK  199 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~  199 (477)
                      ++.++..+.+...+.+...+...+++.+++++.+++.+++.+.+.+...+|....+.||+||||||++|..+|..+....
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~  160 (461)
T PRK05249         81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHP  160 (461)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCC
Confidence            89999999988888888888888889999999999999999999888777744579999999999999976665555567


Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+.+.++++||+++++++++
T Consensus       161 ~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~  240 (461)
T PRK05249        161 RIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVE  240 (461)
T ss_pred             eEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEE
Confidence            78888888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      +++.+++++.+++.     ++.++++|.|++|+|++||+..+.++..++.++++|++.||+++||+.|+|||+|||++.+
T Consensus       241 ~i~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~  315 (461)
T PRK05249        241 KVEGGDDGVIVHLK-----SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP  315 (461)
T ss_pred             EEEEeCCeEEEEEC-----CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc
Confidence            99876666666553     3457999999999999999987667888999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      .+++.|..||++||.||++.....++..+|+++|+.|+++++|+||+||+..|+++.+..+++....++...++++||+|
T Consensus       316 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  395 (461)
T PRK05249        316 SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLK  395 (461)
T ss_pred             ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEE
Confidence            99999999999999999987666788899999999999999999999999999999999999998888888888899999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|++|++|||+|++|++|.|+|+.+++||.++
T Consensus       396 lv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  429 (461)
T PRK05249        396 ILFHRETLEILGVHCFGERATEIIHIGQAIMEQK  429 (461)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999854

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.6e-68  Score=537.89  Aligned_cols=430  Identities=54%  Similarity=0.902  Sum_probs=383.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF  114 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~  114 (477)
                      ..+||++||||||||++||.++++.|.+|+|||+      ...+||+|.+.+|+|++.++.....+....+.+..+|+..
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~   81 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV   81 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence            3469999999999999999999999999999998      3679999999999999999888888877766666778876


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec----CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS----PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                      ....++|..+..+.+.....+...+...++..+++++.+++.+++    ...+.+...++  .+++||+||||||++|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~p~~  159 (475)
T PRK06327         82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSEPRH  159 (475)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCCCCC
Confidence            666789999999999998888888888899999999999999887    44555543333  589999999999999977


Q ss_pred             CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787          191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       191 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                      +|+.+.+...++++++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|+++||
T Consensus       160 ~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi  239 (475)
T PRK06327        160 LPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGL  239 (475)
T ss_pred             CCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCc
Confidence            77766556678888888877778999999999999999999999999999999999999998999999999999999999


Q ss_pred             EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787          271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy  350 (477)
                      +++++++|++++.+++++.+.+.+. +++..++++|.+++++|++|++..+.++.+++.++++|+|.||+++||++|+||
T Consensus       240 ~i~~~~~v~~i~~~~~~v~v~~~~~-~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~Vy  318 (475)
T PRK06327        240 DIHLGVKIGEIKTGGKGVSVAYTDA-DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVY  318 (475)
T ss_pred             EEEeCcEEEEEEEcCCEEEEEEEeC-CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEE
Confidence            9999999999987777766665431 233367999999999999999987667888999999999999999999999999


Q ss_pred             EecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh
Q 011787          351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA  430 (477)
Q Consensus       351 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (477)
                      |+|||++.|.+++.|..||+.||.||++...++++..+|+++|++|+++++|+||++|+..|+++.+..++++...++.+
T Consensus       319 A~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~  398 (475)
T PRK06327        319 AIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALA  398 (475)
T ss_pred             EEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhh
Confidence            99999998999999999999999999987666778889999999999999999999999999999999999998888888


Q ss_pred             cCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       431 ~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      .+++.||+|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus       399 ~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  441 (475)
T PRK06327        399 MGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFK  441 (475)
T ss_pred             cCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            8888999999999999999999999999999999999999864

>PLN02507 glutathione reductase

Probab=100.00  E-value=1.6e-68  Score=537.79  Aligned_cols=423  Identities=31%  Similarity=0.481  Sum_probs=371.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec---------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG  111 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g  111 (477)
                      ..+||++||||||||++||..|++.|++|+|||+         .+.+||+|++.||+|+|.++..+..++...+ ...+|
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~~G  101 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKNYG  101 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHhcC
Confidence            4469999999999999999999999999999996         3579999999999999999998888776554 46677


Q ss_pred             cccc-ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          112 VKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                      +... ...++|.++..+.......+...+...+...+++++.+.+.+++++.+.|.+.+|+...+.||+||||||++|..
T Consensus       102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~  181 (499)
T PLN02507        102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR  181 (499)
T ss_pred             cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC
Confidence            7653 357899999999888888888888888899999999999999999999999888755578999999999999854


Q ss_pred             C--CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787          191 L--PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       191 ~--~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~  268 (477)
                      +  |+.+    ..++.++...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+|+++.+.+++.|+++
T Consensus       182 p~ipG~~----~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~  257 (499)
T PLN02507        182 PNIPGKE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGR  257 (499)
T ss_pred             CCCCCcc----ceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhC
Confidence            3  4422    245777777777779999999999999999999999999999999999999899999999999999999


Q ss_pred             CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      ||+++++++|++++.+++++.+.+.     +++++++|.|++++|++||+..+.++.+|++++++|+|.||+++||++||
T Consensus       258 GI~i~~~~~V~~i~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~  332 (499)
T PLN02507        258 GINLHPRTNLTQLTKTEGGIKVITD-----HGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPS  332 (499)
T ss_pred             CCEEEeCCEEEEEEEeCCeEEEEEC-----CCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCC
Confidence            9999999999999876666666543     45689999999999999999987678899999988999999999999999


Q ss_pred             eEEecccCCCCCchhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHc-CCCEEEEEEecCccc
Q 011787          349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVEYRVGKFPFLANS  426 (477)
Q Consensus       349 vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~  426 (477)
                      |||+|||++.+.+++.|.+||+++|+||++... ..++..+|.++|+.|+++++|+||+||+.. +.++.+...++....
T Consensus       333 IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~  412 (499)
T PLN02507        333 IWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMK  412 (499)
T ss_pred             EEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCccc
Confidence            999999999899999999999999999987543 356778899999999999999999999987 688888887777666


Q ss_pred             cchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          427 RAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       427 ~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++.....+++|+|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus       413 ~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~  459 (499)
T PLN02507        413 NTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCG  459 (499)
T ss_pred             cccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            65554557899999999999999999999999999999999999854

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.6e-68  Score=538.16  Aligned_cols=426  Identities=50%  Similarity=0.798  Sum_probs=381.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..||++||||||||++||..|++.|++|+|+|++. +||+|.+.+|+|++.++..+..++.... ...+|+......++|
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~   80 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAENVGIDF   80 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccCCCccCH
Confidence            35899999999999999999999999999999965 9999999999999999988877766554 456676654556899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      ..+..+.+...+.+...+...+++.+++++.+++.+++++.+.+...++. ..+.||+||||||++|..+|+.+.++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~pg~~~~~~~v  159 (462)
T PRK06416         81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELPGIEIDGRVI  159 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence            99999999988888777888888899999999999999998888754432 67999999999999998788876666678


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      ++.++...+...+++++|||+|++|+|+|..|++.|.+||++++.+++++.+++++.+.+.+.++++||+++++++++++
T Consensus       160 ~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i  239 (462)
T PRK06416        160 WTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV  239 (462)
T ss_pred             EcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            88888888777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML  361 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~  361 (477)
                      +.+++.+.+.+.+  .++.+++++|.|++|+|++|++..+.++..|+.++ +|++.||+++||++|+|||+|||++.+.+
T Consensus       240 ~~~~~~v~v~~~~--gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~~~~  316 (462)
T PRK06416        240 EQTDDGVTVTLED--GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPML  316 (462)
T ss_pred             EEeCCEEEEEEEe--CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCCcch
Confidence            8776666665542  12236799999999999999999866678899888 79999999999999999999999998899


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEE
Q 011787          362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL  441 (477)
Q Consensus       362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  441 (477)
                      ++.|..||+.+|+||++....+++..+|.+.|++|+++++|+||+||+..|+++.+..+++....++.+.+++++++|++
T Consensus       317 ~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli  396 (462)
T PRK06416        317 AHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLI  396 (462)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEE
Confidence            99999999999999998776677888999999999999999999999999999999999888888888777889999999


Q ss_pred             EECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          442 AEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       442 ~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|++|++|||+|++|+++.|+||.+++||..+
T Consensus       397 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  428 (462)
T PRK06416        397 FDKKDGEVLGAHMVGARASELIQEAQLAINWE  428 (462)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999854

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=1.6e-68  Score=534.15  Aligned_cols=417  Identities=30%  Similarity=0.499  Sum_probs=370.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +|||+||||||||++||..+++.|++|+|+|+ +.+||+|.+.+|+|+|.++..+..++...+ ...+|+......++|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~   79 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGKARFDWK   79 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCCCCcCHH
Confidence            58999999999999999999999999999999 689999999999999999988888766543 4667776666688999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCCce
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKR  200 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~~~  200 (477)
                      .+..+.++....+...+...+++.+++++.+++.+++++.+.+. .+|  ..+.||+||||||++|..+  |+..    .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~~p~i~G~~----~  152 (446)
T TIGR01424        80 KLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQKPNLPGHE----L  152 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCCCCCCCCcc----c
Confidence            99999999999988888888999999999999999998887775 344  5799999999999998543  3322    2


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .+++++...+...+++++|||+|++|+|+|..+++.|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++.+++
T Consensus       153 ~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~  232 (446)
T TIGR01424       153 GITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTS  232 (446)
T ss_pred             eechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            45667777777779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      ++..++++.+++.     +++++++|.+++|+|++||++.+.++..|++++++|+|.||+++||++|||||+|||++.+.
T Consensus       233 i~~~~~~~~v~~~-----~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~  307 (446)
T TIGR01424       233 ITKTDDGLKVTLS-----HGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN  307 (446)
T ss_pred             EEEcCCeEEEEEc-----CCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc
Confidence            9876666666553     45689999999999999999877678899999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcC-CCEEEEEEecCccccchhcCCCceEE
Q 011787          361 LAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELG-VEYRVGKFPFLANSRAKAIDDAEGIV  438 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (477)
                      +++.|.+||+++|+||++.. .++++..+|+++|+.|+++++|+||+||+..+ +++.+...++....++...+.++||+
T Consensus       308 l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  387 (446)
T TIGR01424       308 LTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLM  387 (446)
T ss_pred             chhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEE
Confidence            99999999999999999754 45778899999999999999999999999984 99999988887776666666778999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus       388 kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  422 (446)
T TIGR01424       388 KLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMG  422 (446)
T ss_pred             EEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=9.9e-69  Score=534.30  Aligned_cols=417  Identities=31%  Similarity=0.501  Sum_probs=364.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +||++||||||+|.+||..+  .|.+|+|||+ +.+||+|+|.||+|+|.++..+..++...+ ...+|+......++|.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~   76 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIRE-AARLGVDAELDGVRWP   76 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHH-HHhCCccCCCCcCCHH
Confidence            38999999999999998764  5999999998 689999999999999999999888876654 4567776555578999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHH-hhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787          123 AMMAQKDKAVSNLTRG-IEGL-FKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR  200 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~  200 (477)
                      ++..+.+...+.+... .... +++.+++++.|++.+++++.+.+.  +|  ..++||+||||||++|+.+|..+.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~--~g--~~~~~d~lViATGs~p~~p~i~g~~~~~  152 (451)
T PRK07846         77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTG--DG--EEITADQVVIAAGSRPVIPPVIADSGVR  152 (451)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEEC--CC--CEEEeCEEEEcCCCCCCCCCCCCcCCcc
Confidence            9999998888887553 4444 778899999999999987776663  45  5799999999999999655433333456


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      +++.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+ +.|+++++++++++
T Consensus       153 ~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~  231 (451)
T PRK07846        153 YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVG  231 (451)
T ss_pred             EEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence            78888888888889999999999999999999999999999999999999999999988877655 56899999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      ++.+++++.+.+.     +++++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++|||||+|||++.+.
T Consensus       232 i~~~~~~v~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~  306 (451)
T PRK07846        232 VSQDGSGVTLRLD-----DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ  306 (451)
T ss_pred             EEEcCCEEEEEEC-----CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc
Confidence            9877666666553     45689999999999999999987778889999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCC--CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787          361 LAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV  438 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (477)
                      +++.|.+||+++|+||++..  ...++..+|+++|++|+++++|+||+||+..|+++.+..+++....++...++++||+
T Consensus       307 l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  386 (451)
T PRK07846        307 LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFV  386 (451)
T ss_pred             ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEE
Confidence            99999999999999999752  3467888999999999999999999999999999999999999888877777788999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       387 Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  421 (451)
T PRK07846        387 KLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFG  421 (451)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999865

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=2.6e-68  Score=535.93  Aligned_cols=426  Identities=35%  Similarity=0.565  Sum_probs=374.1

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc-cc
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SV  117 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~-~~  117 (477)
                      +|+.+|||+||||||||++||..|++.|++|+|||+ ..+||+|++.+|+|+|.++..+..++.... ...+|+... ..
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~   78 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIER-GLLGGTCVNTGCVPTKTLIASARAAHLARR-AAEYGVSVGGPV   78 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CccCCceeccccCcHHHHHHHHHHHHHHHH-HHhcCcccCccC
Confidence            356679999999999999999999999999999998 589999999999999999988887776654 355677643 25


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCcc
Q 011787          118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI  196 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~  196 (477)
                      .++|..+..+.+.....+...+...+++. +++++.++..+++.+.+.+   ++  .++.||+||||||++|..++..+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~p~i~G~  153 (463)
T PRK06370         79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGL  153 (463)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCCCCCCCC
Confidence            78999999999888887777777888887 9999999998888777766   34  579999999999999964432223


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      +...+++.++.......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~  233 (463)
T PRK06370        154 DEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNA  233 (463)
T ss_pred             CcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCC
Confidence            34567888888777778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                      ++.+++.+++++.+.+..  .+++.++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|+|||+|||+
T Consensus       234 ~V~~i~~~~~~~~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~  311 (463)
T PRK06370        234 ECIRVERDGDGIAVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCN  311 (463)
T ss_pred             EEEEEEEcCCEEEEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecC
Confidence            999998776665555432  123468999999999999999986657888999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787          357 PGPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       357 ~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (477)
                      +.+.+++.|..||++||+||++. ..++++..+|+++|++|+++++|+||+||+..|+++.+..+++....++...++++
T Consensus       312 ~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  391 (463)
T PRK06370        312 GRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQ  391 (463)
T ss_pred             CCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCC
Confidence            99999999999999999999975 45577888999999999999999999999999999999999999888887767789


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ||+|+++|++|++|||+|++|+++.|+|+.+++||..+
T Consensus       392 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  429 (463)
T PRK06370        392 GFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAG  429 (463)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999854

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=2.1e-68  Score=535.15  Aligned_cols=420  Identities=31%  Similarity=0.500  Sum_probs=369.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.+|||+||||||||++||..|+++|++|+|||+ ..+||+|.+.+|+|++.++......+........+|+......++
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~-~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEA-KRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD   80 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec-cchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence            3469999999999999999999999999999999 589999999999999999888877766555345567765556789


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~  200 (477)
                      |..+..+.++.+..+...+...+.+.+++++.+++.+++.+.+.+   ++  .++.||+||||||++|..++..+  ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~~p~i~g--~~~  153 (450)
T PRK06116         81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPSIPDIPG--AEY  153 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCC--cce
Confidence            999999988888888888888888899999999999998876666   45  67999999999999985443211  124


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ++++++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|+++||+++++++|.+
T Consensus       154 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~  233 (450)
T PRK06116        154 GITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKA  233 (450)
T ss_pred             eEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence            67777777777789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          281 VDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       281 i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      ++.++++ +.+.+.     +++++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||++|||||+|||++.+
T Consensus       234 i~~~~~g~~~v~~~-----~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~  308 (450)
T PRK06116        234 VEKNADGSLTLTLE-----DGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV  308 (450)
T ss_pred             EEEcCCceEEEEEc-----CCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc
Confidence            9876544 555543     4568999999999999999997767888999999999999999999999999999999888


Q ss_pred             CchhHHHHHHHHHHHHHcCCCC--CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCccccchhcCCCc
Q 011787          360 MLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  435 (477)
                      .+++.|.+||+.||+||++...  ..++..+|+++|++|+++++|+||+||++.+.+  +.+...++....++...++++
T Consensus       309 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (450)
T PRK06116        309 ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQP  388 (450)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCc
Confidence            9999999999999999997543  467889999999999999999999999999887  888888888777777667789


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ||+||++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       389 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  426 (450)
T PRK06116        389 CLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMG  426 (450)
T ss_pred             eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=3.8e-68  Score=533.27  Aligned_cols=423  Identities=32%  Similarity=0.556  Sum_probs=378.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc---ccccC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS---SVEVD  120 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~---~~~~~  120 (477)
                      .|++|||||++|+.||..|++.|.+|+|||++ .+||+|++.+|+|+|.++..+...+...+ ...+|+...   ...++
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRR-AAELGIRFIDDGEARVD   79 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHH-HHhCCcccccCcccccC
Confidence            58999999999999999999999999999984 69999999999999999988877776553 566777642   45789


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEE----ecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCcc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF----ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI  196 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~  196 (477)
                      |..+..+.+...+.+...+...+++++++++.+++.+    ++++.+.|.+.+|+..++.||+||||||++|..+|+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~  159 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP  159 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence            9999999999988888888888899999999999998    777888888777744579999999999999976665444


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      ....+++.++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++...+.+.|+++||++++++
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~  239 (466)
T PRK07845        160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRS  239 (466)
T ss_pred             CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCC
Confidence            45568888888877778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                      ++.+++.+++++.+.+.     +++++++|.|++++|++||+..+.++++|++++++|+|.||+++||++|||||+|||+
T Consensus       240 ~v~~v~~~~~~~~v~~~-----~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~  314 (466)
T PRK07845        240 RAESVERTGDGVVVTLT-----DGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT  314 (466)
T ss_pred             EEEEEEEeCCEEEEEEC-----CCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence            99999876666666653     4568999999999999999997667889999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787          357 PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       357 ~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (477)
                      +.+++++.|..||++|++|+++.. .+..+..+|..+|++|+++++|+||++|+..++++.+..+++....++.+.+.++
T Consensus       315 ~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  394 (466)
T PRK07845        315 GVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRD  394 (466)
T ss_pred             CCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhcCCCc
Confidence            999999999999999999999865 4467888999999999999999999999999999999999998888888777889


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ||+|+++|++|++|||+|++|++|.|+|+.+++||.++
T Consensus       395 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  432 (466)
T PRK07845        395 GFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNR  432 (466)
T ss_pred             eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999854

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=8.5e-68  Score=533.05  Aligned_cols=428  Identities=46%  Similarity=0.749  Sum_probs=378.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...||++||||||||++||..|++.|++|+|||+ ..+||+|.+.+|+|+|.++.....++.... ...+|+......++
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~   79 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQTAKK-ASPFGISVSGPALD   79 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc-cCCCcceEcCCcCchHHHHHHHHHHHHHHH-HHhcCccCCCCccC
Confidence            4579999999999999999999999999999999 489999999999999999988888776654 45667765556789


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC-------EEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS-------EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG  193 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g  193 (477)
                      |..+..+.+..+..+...+...+++.+++++.+.+.+++.+       .+.|.+.+|+..++.||+||||||++|..+|+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~  159 (472)
T PRK05976         80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPG  159 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCC
Confidence            99999999999888877788888899999999999999988       88888777755689999999999999977777


Q ss_pred             CccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787          194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~  273 (477)
                      .+.+...++++++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|++.||+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~  239 (472)
T PRK05976        160 LPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV  239 (472)
T ss_pred             CCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence            66556668888888887778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          274 LKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       274 ~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++++++++. .++++.+...  .+++.+++++|.+++|+|++|++..+.++..++..+ +|++.||++++|+.|+|||+
T Consensus       240 ~~~~v~~i~~~~~~~~~~~~~--~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~ts~~~IyAi  316 (472)
T PRK05976        240 TGAKVLGLTLKKDGGVLIVAE--HNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQTKERHIYAI  316 (472)
T ss_pred             eCcEEEEEEEecCCCEEEEEE--eCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCcccCCCCEEEe
Confidence            9999999975 2334433221  123345799999999999999998765667777654 68999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhc
Q 011787          353 GDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI  431 (477)
Q Consensus       353 GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (477)
                      |||++.+.+++.|..||+.||+||++.. ..+++...|.++|++|+++++|++++|++..|+++.+...++....++.+.
T Consensus       317 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~  396 (472)
T PRK05976        317 GDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTY  396 (472)
T ss_pred             eecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhc
Confidence            9999989999999999999999999875 557788899999999999999999999999999999999999988888888


Q ss_pred             CCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          432 DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       432 ~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++++||+|+++|++|++|||+|++|++|.|+|+.+++||..+
T Consensus       397 ~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  438 (472)
T PRK05976        397 GESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELG  438 (472)
T ss_pred             CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            888999999999999999999999999999999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=4.8e-68  Score=529.72  Aligned_cols=418  Identities=31%  Similarity=0.494  Sum_probs=364.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc-ccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~  121 (477)
                      +|||+||||||||++||..|++.|++|+|||+ +.+||+|++.+|+|+|.++.....++...+ ...+|+... ...++|
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~   79 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHD-AADYGFYQNLENTFNW   79 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhH-HhhcCcccCCcCccCH
Confidence            58999999999999999999999999999999 579999999999999999988887776653 456676543 235899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      ..+..+.++..+.+...+...+++.+++++.++..+.+++.+.+   ++  ..+.||+||||||++|..++.++.. ...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~~i~g~-~~~  153 (450)
T TIGR01421        80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPENIPGA-ELG  153 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCCCC-cee
Confidence            99999999999998888888899999999999998888776655   34  5799999999999998654222211 233


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +++++...+...+++++|||+|++|+|+|..|++.|.+||++++.+++++.+|+++.+.+++.|+++||++++++.++++
T Consensus       154 ~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i  233 (450)
T TIGR01421       154 TDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKV  233 (450)
T ss_pred             EcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence            56777777777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCe-EEEEEeecCCCce-EEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          282 DLSGDG-VKLTLEPAAGGEK-TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       282 ~~~~~~-~~v~~~~~~~~~~-~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      +.++++ +.+++.     ++ +.+++|.|++++|++||++.+.++..+++++++|++.||+++||++|+|||+|||++.+
T Consensus       234 ~~~~~~~~~v~~~-----~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~  308 (450)
T TIGR01421       234 EKTVEGKLVIHFE-----DGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV  308 (450)
T ss_pred             EEeCCceEEEEEC-----CCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc
Confidence            865443 455553     23 57999999999999999997767889999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCC--CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-CCC-EEEEEEecCccccchhcCCCc
Q 011787          360 MLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVE-YRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  435 (477)
                      .+++.|.+||+.+|+||++..  .+.++..+|+++|++|+++++|+||+||++. +++ +.+...++....++...++++
T Consensus       309 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  388 (450)
T TIGR01421       309 ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQK  388 (450)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCc
Confidence            999999999999999999643  3467889999999999999999999999876 654 888888888777776677889


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ||+|+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus       389 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  426 (450)
T TIGR01421       389 CRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMG  426 (450)
T ss_pred             eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999865

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=5.2e-68  Score=530.36  Aligned_cols=424  Identities=30%  Similarity=0.496  Sum_probs=361.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      .+||++||||||+|+.||..+++. |.+|+|||++        +.+||+|+|.||+|+|.|+..+...+...+ ...+|+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~gi   80 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRE-SAGFGW   80 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHH-hhccCe
Confidence            469999999999999999999997 8999999974        579999999999999999999988776654 355677


Q ss_pred             ccc--ccccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEecCCEEEEEecC---C-ceEEEEecEEEEccC
Q 011787          113 KFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIE---G-GNTVVKGKNIIIATG  185 (477)
Q Consensus       113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~---g-~~~~i~~d~lvlAtG  185 (477)
                      ...  ...++|..+..+.+..+..+...+...++. .+++++.|.+.+++++.+.|....   + ..+.+.||+||||||
T Consensus        81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG  160 (486)
T TIGR01423        81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG  160 (486)
T ss_pred             eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence            532  346899999999999999998888888887 499999999999999998886422   1 135799999999999


Q ss_pred             CCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcCCCCCHHHHHHHH
Q 011787          186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQ  262 (477)
Q Consensus       186 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~  262 (477)
                      ++|..+|..+.  ..+++.++...+...+++++|||+|++|+|+|..+..+   |.+||++++.+++++.+|+++.+.+.
T Consensus       161 s~p~~p~i~G~--~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~  238 (486)
T TIGR01423       161 SWPQMLGIPGI--EHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELT  238 (486)
T ss_pred             CCCCCCCCCCh--hheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHH
Confidence            99854432111  23577777777777899999999999999999877655   99999999999999999999999999


Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER  341 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~  341 (477)
                      +.|+++||++++++.+++++.++++ ..+.+.     ++.++++|.|++|+|++||+..+.++++|++++++|+|.||++
T Consensus       239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~  313 (486)
T TIGR01423       239 KQLRANGINIMTNENPAKVTLNADGSKHVTFE-----SGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEF  313 (486)
T ss_pred             HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEc-----CCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCC
Confidence            9999999999999999999865443 445543     3458999999999999999998777889999999999999999


Q ss_pred             CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEE
Q 011787          342 FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF  420 (477)
Q Consensus       342 l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  420 (477)
                      +||++|||||+|||++.+.+++.|.+||+++|+||++.. ..+++..+|+++|+.|+++++|+||+||+..+.++.+...
T Consensus       314 l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~~~  393 (486)
T TIGR01423       314 SRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYES  393 (486)
T ss_pred             CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEEEE
Confidence            999999999999999999999999999999999999754 3467778999999999999999999999988777777766


Q ss_pred             ecCccccchhcC-CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          421 PFLANSRAKAID-DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       421 ~~~~~~~~~~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++....+..... .+++|+|+++|++|++|||+|++|++|.|+|+.+++||..+
T Consensus       394 ~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~  447 (486)
T TIGR01423       394 SFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLN  447 (486)
T ss_pred             eeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            665444332211 13699999999999999999999999999999999999854

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02546 glutathione reductase

Probab=100.00  E-value=5e-68  Score=535.48  Aligned_cols=417  Identities=30%  Similarity=0.469  Sum_probs=365.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec---------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      .+|||+||||||||+.||..|+++|++|+|||+         ...+||+|++.||+|+|.++..+..++...+ ...+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~-~~~~g~  156 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE-SRGFGW  156 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh-hhhcCc
Confidence            469999999999999999999999999999996         2568999999999999999988888776554 466787


Q ss_pred             ccc-ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC
Q 011787          113 KFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL  191 (477)
Q Consensus       113 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~  191 (477)
                      ... ...++|..+..+++..+..+...+...+++.+++++.+.+++++++.+.+   +|  ..+.||+||||||++|..+
T Consensus       157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCCCC
Confidence            653 45789999999999999999999999999999999999999999987665   45  5799999999999999543


Q ss_pred             --CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          192 --PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       192 --~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                        ||.    ..+++++++..+...+++++|||+|++|+|+|..|+..|.+|+++++.+.+++.+++++...+++.|+++|
T Consensus       232 ~IpG~----~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~G  307 (558)
T PLN02546        232 DIPGI----EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG  307 (558)
T ss_pred             CCCCh----hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCC
Confidence              443    23677778877777899999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          270 MKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      |++++++.+.++...+ +.+.+...     +++...+|.|++++|++||++.+.++++|++++++|+|.||+++||++|+
T Consensus       308 V~i~~~~~v~~i~~~~~g~v~v~~~-----~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~  382 (558)
T PLN02546        308 IEFHTEESPQAIIKSADGSLSLKTN-----KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPS  382 (558)
T ss_pred             cEEEeCCEEEEEEEcCCCEEEEEEC-----CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCC
Confidence            9999999999997643 33444322     34455689999999999999876678899999988999999999999999


Q ss_pred             eEEecccCCCCCchhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccc
Q 011787          349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSR  427 (477)
Q Consensus       349 vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  427 (477)
                      |||+|||++.+.+++.|..||+++|+||++... ..++..+|+++|++|+++++|+||+||++.++++++...++....+
T Consensus       383 IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~~  462 (558)
T PLN02546        383 IWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKA  462 (558)
T ss_pred             EEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccchh
Confidence            999999999999999999999999999998543 3567889999999999999999999999999999998888876655


Q ss_pred             chhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          428 AKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       428 ~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ......+++|+|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus       463 ~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~  508 (558)
T PLN02546        463 TLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAG  508 (558)
T ss_pred             hhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            5444456899999999999999999999999999999999999865

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.3e-67  Score=530.69  Aligned_cols=424  Identities=31%  Similarity=0.548  Sum_probs=364.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ..+|||+||||||||++||..|++.|++|+|||+ ..+||+|.+.||+|++.++.....++........+|+......++
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~-~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~   82 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIER-GTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD   82 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEc-cccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence            4579999999999999999999999999999999 579999999999999999888877664443211346654455789


Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          121 LPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                      |..+..+.++....+... +...++++ +++++.+.+.+++.+.+.|.+.+|+..+++||+||||||++|..+|..+.+.
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~  162 (468)
T PRK14694         83 RSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAE  162 (468)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence            999999988877766543 44455544 8999999999999999999888775568999999999999986443222223


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ..+++..+...+...+++++|||+|++|+|+|..|++.|.+|+++.+ +++++.+++++.+.+++.|++.||++++++.+
T Consensus       163 ~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v  241 (468)
T PRK14694        163 TPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQA  241 (468)
T ss_pred             CceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            34667777777777789999999999999999999999999999986 56788889999999999999999999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      ++++.+++.+.+...      +.++++|.|++|+|++||+..+.++++|++. ++|+|.||+++||++|+|||+|||++.
T Consensus       242 ~~i~~~~~~~~v~~~------~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~~~  314 (468)
T PRK14694        242 SEVDYNGREFILETN------AGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCTDQ  314 (468)
T ss_pred             EEEEEcCCEEEEEEC------CCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecCCC
Confidence            999876655544432      2369999999999999999876667778876 468999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787          359 PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV  438 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (477)
                      +.+.+.|..||++||.||++...++++..+|.++|++|+++++|+||+||+..|+++.+..+++....++...++++||+
T Consensus       315 ~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  394 (468)
T PRK14694        315 PQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFI  394 (468)
T ss_pred             cccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEE
Confidence            99999999999999999998776678888999999999999999999999999999999999998888887777789999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus       395 klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  429 (468)
T PRK14694        395 KMVAERGSGRLLGVQVVAGEAGELIQTAVMALRAR  429 (468)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=1e-67  Score=527.65  Aligned_cols=417  Identities=31%  Similarity=0.515  Sum_probs=360.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +||++|||+||+|..||..  ..|.+|+|||+ +.+||+|+|+||+|+|.++..+...+...+ ...+|+......++|.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~d~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SARLGIDAEIDSVRWP   77 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHH-hhccCeeCCCCccCHH
Confidence            5899999999999998654  46999999998 689999999999999999999888877664 4567776444568999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHH-h--hhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          123 AMMAQKDK-AVSNLTRGIEGL-F--KKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       123 ~~~~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                      ++..+... ..+.+....... .  ++.+++++.|++.+.+...+.+  .+|  .+++||+||||||++|..+|......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g--~~~~~d~lIiATGs~p~~p~~~~~~~  153 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDG--EEITGDQIVIAAGSRPYIPPAIADSG  153 (452)
T ss_pred             HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCC--cEEEeCEEEEEECCCCCCCCCCCCCC
Confidence            99999877 555544332222 2  3479999999999998776665  345  57999999999999997666554444


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ..+++.++...+.+.+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.++ .||++++++++
T Consensus       154 ~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V  232 (452)
T TIGR03452       154 VRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNV  232 (452)
T ss_pred             CEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEE
Confidence            56788888888888899999999999999999999999999999999999988899999888877554 68999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      ++++.+++++.+++.     +++++++|.+++++|++||++.+.++++|++++++|+|.||+++||++|+|||+|||++.
T Consensus       233 ~~i~~~~~~v~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~  307 (452)
T TIGR03452       233 TAVEQDGDGVTLTLD-----DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP  307 (452)
T ss_pred             EEEEEcCCeEEEEEc-----CCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc
Confidence            999877666666553     345899999999999999999877788899999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCCC--CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCce
Q 011787          359 PMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG  436 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (477)
                      +++++.|.+||+++|+||++...  ..++..+|+++|++|+++++|+||+||+..|+++.+...++....++...++++|
T Consensus       308 ~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g  387 (452)
T TIGR03452       308 YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTG  387 (452)
T ss_pred             ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCe
Confidence            99999999999999999997642  5677889999999999999999999999999999999988888888777788899


Q ss_pred             EEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          437 IVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       437 ~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+|+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus       388 ~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~  424 (452)
T TIGR03452       388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFG  424 (452)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.8e-67  Score=530.22  Aligned_cols=425  Identities=31%  Similarity=0.495  Sum_probs=365.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.++|++|||+||||+++|..|++.|.+|+|||+++.+||+|++.||+|++.++..+...+.... ...+|+......++
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~   92 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRS-NPFDGVEAVAPSID   92 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhh-ccccCcccCCCccC
Confidence            34689999999999999999999999999999998799999999999999999988777665543 23346654445678


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          121 LPAMMAQKDKAVSNLTR-GIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                      |..+..+.......+.. .+...++.. +++++.|.+.+++.+.+.|...+|+..++.||+||||||++|..++..+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~  172 (479)
T PRK14727         93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMD  172 (479)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCc
Confidence            88888888887766643 355666654 8999999999999999999887775567999999999999986443222223


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ..+++..+.......+++++|||+|++|+|+|..|++.|.+|+++++. ++++.+|+++.+.+++.|++.||++++++++
T Consensus       173 ~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        173 TPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             cceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence            345666666555567899999999999999999999999999999874 6778899999999999999999999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      ++++.+++.+.+...     + .++++|.|++|+|+.||+..+.++.+|++++++|+|.||+++||++|+|||+|||++.
T Consensus       252 ~~i~~~~~~~~v~~~-----~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~  325 (479)
T PRK14727        252 SLVEHDDNGFVLTTG-----H-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDL  325 (479)
T ss_pred             EEEEEeCCEEEEEEc-----C-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCc
Confidence            999876666555432     2 3689999999999999999776788899999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787          359 PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV  438 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (477)
                      |.+.+.|..||+.||.||++...++++...|.++|++|+++++|+||+||+..|+++.+..+++....++...+.+++++
T Consensus       326 ~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  405 (479)
T PRK14727        326 PQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFI  405 (479)
T ss_pred             chhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEE
Confidence            99999999999999999998776778888999999999999999999999999999999999988887776666678999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ||++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       406 Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  440 (479)
T PRK14727        406 KLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNR  440 (479)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999864

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=2e-67  Score=536.73  Aligned_cols=427  Identities=34%  Similarity=0.536  Sum_probs=366.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-CCCCceeeccCccCchhhhhhhHHHHHHHhh--hhhCCcc------
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVK------  113 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~--~~~~g~~------  113 (477)
                      +||++|||+||+|+.||..+++.|++|+|||++ ..+||+|++.||+|+|.|+..+..++.....  +..+|+.      
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~  195 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN  195 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence            689999999999999999999999999999974 4799999999999999999999888877643  2345664      


Q ss_pred             -----------c-cccccChHHHHHHHHHHHHHHHHHHHHHhhhCC-------eEEEEeEEEEecCCEEEEEecCCceEE
Q 011787          114 -----------F-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-------VTYVKGYGKFISPSEVSVDTIEGGNTV  174 (477)
Q Consensus       114 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~~v~~~~g~~~~  174 (477)
                                 . ....++|..+..+.+.....+...+...+++.+       ++++.+...+++++.+.+. .++  .+
T Consensus       196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g--~~  272 (659)
T PTZ00153        196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSG--KE  272 (659)
T ss_pred             cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCC--EE
Confidence                       1 234679999999999999998888888887764       8999999999999988775 344  67


Q ss_pred             EEecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC
Q 011787          175 VKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD  254 (477)
Q Consensus       175 i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~  254 (477)
                      +.||+||||||++|..++..+.+...+++++++..+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|
T Consensus       273 i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d  352 (659)
T PTZ00153        273 FKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLD  352 (659)
T ss_pred             EECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCC
Confidence            99999999999999766655555667889999888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HhcCcEEEeCceEEEEEEcCCe--EEEEEeecCCC----------ceEEEEcCEEEEeecCCCCCCCC
Q 011787          255 GEIRKQFQRSL-EKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGG----------EKTILEADVVLVSAGRTPFTAGL  321 (477)
Q Consensus       255 ~~~~~~~~~~l-~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~~~~~----------~~~~i~~D~vi~a~G~~p~~~~l  321 (477)
                      +++.+.+.+.+ +++||++++++.|++++..++.  +.+.+.+..++          +.+++++|.|++|+|++||++.+
T Consensus       353 ~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L  432 (659)
T PTZ00153        353 ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNL  432 (659)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccC
Confidence            99999998875 6789999999999999876543  44544321111          12479999999999999999987


Q ss_pred             CccccceeecCCCCeecCCCCCCC------CCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC-------------CCC
Q 011787          322 GLDKIGVETDKMGRIPVNERFATN------IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK-------------HGH  382 (477)
Q Consensus       322 ~~~~~gl~~~~~g~i~vd~~l~t~------~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~-------------~~~  382 (477)
                      .++..++..++ |+|.||++|||+      +|+|||+|||++.+++++.|.+||+++++||++.             ...
T Consensus       433 ~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~  511 (659)
T PTZ00153        433 GLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKP  511 (659)
T ss_pred             CchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence            77888888764 899999999997      6999999999999999999999999999999986             445


Q ss_pred             CCCCCCceEEEcCCCeeeecCCHHHHHHcCC--CEEEEEEecCccccchhcCC----------------------CceEE
Q 011787          383 VDYDKVPGVVYTHPEVASVGKTEEQVKELGV--EYRVGKFPFLANSRAKAIDD----------------------AEGIV  438 (477)
Q Consensus       383 ~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------------~~~~~  438 (477)
                      ++|..+|.++|++|+++++|+||+||++.+.  ++.+...++....++...++                      ++||+
T Consensus       512 ~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~v  591 (659)
T PTZ00153        512 IIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMV  591 (659)
T ss_pred             cccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEE
Confidence            6788999999999999999999999999874  46666677777776654433                      78999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++|++|++|||+|++|++|.|+||.+++||.++
T Consensus       592 Kli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~  626 (659)
T PTZ00153        592 KIVYLKDTKEILGMFIVGSYASILIHEGVLAINLK  626 (659)
T ss_pred             EEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999865

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3.1e-67  Score=528.55  Aligned_cols=420  Identities=39%  Similarity=0.636  Sum_probs=368.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      |||+||||||||++||..|++.|++|+|||++ .+||+|++.+|+|++.++.....++....  ..+|+......++|..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~--~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVNVGCVPSKMLLRAAEVAHYARK--PPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeeeecEEccHHHHHHHHHHHHhhc--cCcccccCCCccCHHH
Confidence            69999999999999999999999999999995 59999999999999999988877766554  2366655556789999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCCce
Q 011787          124 MMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKR  200 (477)
Q Consensus       124 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~~~  200 (477)
                      +..+.++....+.. .+...+++.+++++.+++.+.+.+.+.+.  ++ ...+.||+||||||++|..+  |+.+  ...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~--~g-~~~~~~~~lIiATGs~p~~p~i~G~~--~~~  152 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVD--LG-REVRGAKRFLIATGARPAIPPIPGLK--EAG  152 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEc--CC-eEEEEeCEEEEcCCCCCCCCCCCCcc--cCc
Confidence            99999888877754 36677888899999999999887766553  33 24689999999999998543  4433  345


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      +++++++......+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++...+++.+++.||+++++++|++
T Consensus       153 ~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~  232 (463)
T TIGR02053       153 YLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKA  232 (463)
T ss_pred             eECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEE
Confidence            78888887777778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      ++.+++...+++..  +++++++++|.|++|+|++||++.+.++..+++++++|+|.||+++||+.|+|||+|||++.+.
T Consensus       233 i~~~~~~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~  310 (463)
T TIGR02053       233 VSVRGGGKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ  310 (463)
T ss_pred             EEEcCCEEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc
Confidence            98766655555532  1234689999999999999999866678889999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          361 LAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      +++.|..||++||.||++. ..++++..+|.++|++|+++++|+|+++|+..|+++.+..+++....++...+++.|++|
T Consensus       311 ~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  390 (463)
T TIGR02053       311 LEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIK  390 (463)
T ss_pred             cHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEE
Confidence            9999999999999999986 566778889999999999999999999999999999999999998888888788899999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       391 li~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  424 (463)
T TIGR02053       391 LVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAG  424 (463)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999854

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.4e-67  Score=526.24  Aligned_cols=421  Identities=39%  Similarity=0.649  Sum_probs=373.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc--cccccChH
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLP  122 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~  122 (477)
                      +++||||||||++||..|++.|++|+|||+ ..+||+|++.||+|+|.++..+..++.... ...+|+..  .....+|.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~-~~~GG~c~n~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~~   79 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE-ADLGGTCLNEGCMPTKSLLESAEVHDKVKK-ANHFGITLPNGSISIDWK   79 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEC-CcccccCCCCccccchHHHHHHHHHHHHHH-HHhcCccccCCCCccCHH
Confidence            799999999999999999999999999999 579999999999999999998888776654 35567754  24578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+.++..+.+.......+++.+++++.|++.+++++.+.|...++ ..+++||+||||||++|..+|..+.+...++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~~~~~~~v~  158 (458)
T PRK06912         80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFAPFDGKWII  158 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence            999999999888888888888889999999999999999998886554 3579999999999999976665444456788


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      ++.+...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+.+.|++.||++++++++++++
T Consensus       159 ~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~  238 (458)
T PRK06912        159 NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN  238 (458)
T ss_pred             cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            88888888888999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                      .++..+.+..    +++..++++|.|++|+|++||...+.++..|+..+++| +.||+++||+.|||||+|||++.+.++
T Consensus       239 ~~~~~v~~~~----~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la  313 (458)
T PRK06912        239 SYKKQALFEY----EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA  313 (458)
T ss_pred             EcCCEEEEEE----CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCcccH
Confidence            6655444331    12335799999999999999998766778888887766 999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEE
Q 011787          363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA  442 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  442 (477)
                      +.|.+||++||.||++...++++..+|.++|++|+++++|+|++||+..++++.+..+++....++...+++.||+||++
T Consensus       314 ~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~  393 (458)
T PRK06912        314 HVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIV  393 (458)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEE
Confidence            99999999999999987666778889999999999999999999999999999999988888888888888899999999


Q ss_pred             ECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          443 EKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       443 ~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |++|++|||+|++|+++.|+|+.+++||.++
T Consensus       394 d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  424 (458)
T PRK06912        394 EPKYQEIVGISIIGPRATELIGQGTVMIHTE  424 (458)
T ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999754

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=1.1e-66  Score=525.24  Aligned_cols=419  Identities=26%  Similarity=0.441  Sum_probs=356.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+||++||||||||++||..+++.|.+|+|||+ +.+||+|+++||+|+|.++..+...+...+ ...+|+... ..++|
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk-~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~Gi~~~-~~~d~  123 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEK-DYLGGTCVNVGCVPKKIMFNAASIHDILEN-SRHYGFDTQ-FSFNL  123 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEec-ccccccccccCCCCCchhhhhcccHHHHHH-HHhcCCCcc-CccCH
Confidence            568999999999999999999999999999999 489999999999999999988877665443 455676532 36899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEE--------------------------ecCCceEEE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVD--------------------------TIEGGNTVV  175 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~--------------------------~~~g~~~~i  175 (477)
                      ..+..+.+..+..+.+.+...+++.+|+++.|++.+.+++++.|.                          ..+|  .++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--~~i  201 (561)
T PTZ00058        124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--QVI  201 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC--cEE
Confidence            999999999999888888888899999999999999998887641                          2344  579


Q ss_pred             EecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCH
Q 011787          176 KGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDG  255 (477)
Q Consensus       176 ~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~  255 (477)
                      .||+||||||++|..++..+.  ..+++++++..+.. +++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+
T Consensus       202 ~ad~lVIATGS~P~~P~IpG~--~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~  278 (561)
T PTZ00058        202 EGKNILIAVGNKPIFPDVKGK--EFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE  278 (561)
T ss_pred             ECCEEEEecCCCCCCCCCCCc--eeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCH
Confidence            999999999999954332111  24677777777665 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG  334 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g  334 (477)
                      ++.+.+++.|+++||++++++.+.+++.+++ ++.+.+.    ++++++++|.|++|+|++||++.+.++..++. +++|
T Consensus       279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~----~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G  353 (561)
T PTZ00058        279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS----DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKG  353 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEEC----CCCEEEECCEEEECcCCCCCccccCcccccee-cCCC
Confidence            9999999999999999999999999986543 4444432    13467999999999999999998766666665 4578


Q ss_pred             CeecCCCCCCCCCCeEEecccCC----------------------------------CCCchhHHHHHHHHHHHHHcCCC
Q 011787          335 RIPVNERFATNIPGVYAIGDVIP----------------------------------GPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       335 ~i~vd~~l~t~~~~vya~GD~~~----------------------------------~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      +|.||+++||++|+|||+|||++                                  .+++++.|.+||++||+||++..
T Consensus       354 ~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~  433 (561)
T PTZ00058        354 YIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPF  433 (561)
T ss_pred             eEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998                                  57899999999999999999753


Q ss_pred             -CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-CC-CEEEEEEecCccccchhc----CCCceEEEEEEECCCCeEEEEE
Q 011787          381 -GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GV-EYRVGKFPFLANSRAKAI----DDAEGIVKILAEKETDKILGVH  453 (477)
Q Consensus       381 -~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~~~~~~i~G~~  453 (477)
                       ...++..+|+++|++|+++++|+||+||+.. ++ ++.+...++....++...    .++++++|+++|+++++|||+|
T Consensus       434 ~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~  513 (561)
T PTZ00058        434 SRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLH  513 (561)
T ss_pred             CcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEE
Confidence             3457788999999999999999999999987 54 577777777766655432    2467999999999999999999


Q ss_pred             EEcCChHHHHHHHHHHhcCC
Q 011787          454 IMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       454 ~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++|++|.|+||.+++||.++
T Consensus       514 ivG~~a~elI~~~a~ai~~~  533 (561)
T PTZ00058        514 IVGLNADEILQGFAVALKMN  533 (561)
T ss_pred             EECCCHHHHHHHHHHHHHcC
Confidence            99999999999999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=2.1e-66  Score=520.45  Aligned_cols=426  Identities=28%  Similarity=0.444  Sum_probs=363.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-----C---CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-----G---ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF  114 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-----~---~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~  114 (477)
                      +||++|||+||||+.||..+++.|.+|+|||+.     .   .+||+|++.||+|+|.++..+...+...+ ...+|+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~   80 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWNV   80 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhh-hhhcCccc
Confidence            489999999999999999999999999999973     1   58999999999999999988887776543 35567765


Q ss_pred             cc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787          115 SS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG  193 (477)
Q Consensus       115 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g  193 (477)
                      .. ..++|..+..+.++.+..+...+...++..+|+++.|.+.+++++++.|...+|+...+.||+||||||++|+.++ 
T Consensus        81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~-  159 (484)
T TIGR01438        81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPG-  159 (484)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCC-
Confidence            44 5789999999999999998888888899999999999999999999888765664568999999999999985433 


Q ss_pred             CccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787          194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~  273 (477)
                      ++......++++++..+...+++++|||+|++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|+++||+++
T Consensus       160 ipG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~  238 (484)
T TIGR01438       160 IPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK  238 (484)
T ss_pred             CCCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence            2211124567788877777889999999999999999999999999999997 578899999999999999999999999


Q ss_pred             eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecC-CCCeecCCCCCCCCCCeEEe
Q 011787          274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       274 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++.+.+++..++.+.+++.+.  .+++++++|.|++|+|++||+..+.++.+|+++++ +|+|.||+++||++|+|||+
T Consensus       239 ~~~~v~~v~~~~~~~~v~~~~~--~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~  316 (484)
T TIGR01438       239 RQFVPIKVEQIEAKVKVTFTDS--TNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV  316 (484)
T ss_pred             eCceEEEEEEcCCeEEEEEecC--CcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEE
Confidence            9999999987666666655421  11357999999999999999998778899999875 48999999999999999999


Q ss_pred             cccCC-CCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-CC-CEEEEEEecCccccc
Q 011787          353 GDVIP-GPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GV-EYRVGKFPFLANSRA  428 (477)
Q Consensus       353 GD~~~-~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~-~~~~~~~~~~~~~~~  428 (477)
                      |||+. .+.+++.|.+||+.+|+||++.. ...++..+|+.+|++|+++++|+||+||++. +. .+.+...++....++
T Consensus       317 GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~  396 (484)
T TIGR01438       317 GDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWT  396 (484)
T ss_pred             EEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhH
Confidence            99996 67899999999999999999743 3367888999999999999999999999986 55 577777777665555


Q ss_pred             hhcCC--CceEEEEEEE-CCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          429 KAIDD--AEGIVKILAE-KETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       429 ~~~~~--~~~~~k~~~~-~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ....+  +.+|+|++++ ++|++|||+|++|++|.|+||.+++||..+
T Consensus       397 ~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~  444 (484)
T TIGR01438       397 IPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG  444 (484)
T ss_pred             hhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            54433  6799999996 569999999999999999999999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.2e-66  Score=535.12  Aligned_cols=424  Identities=31%  Similarity=0.500  Sum_probs=363.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+|||+||||||||++||..|++.|++|+|||++ .+||+|++.||+|+|.++..+...+.....-...|+.......+|
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  175 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR  175 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence            4699999999999999999999999999999995 899999999999999998888776655432111466544456789


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787          122 PAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK  199 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~  199 (477)
                      ..+..+.+..+..+... +...+.+. +++++.+.+.+++.+.+.|.+.+|+..++.||+||||||++|..++..+.+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~  255 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET  255 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence            99998888777766542 45556665 89999999999999999988777644679999999999999864332222233


Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .+++..+.......+++++|||+|++|+|+|..|++.|.+|+++++. .+++.+|+++.+.+++.|++.||++++++.++
T Consensus       256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~  334 (561)
T PRK13748        256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS  334 (561)
T ss_pred             ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            46666666656667899999999999999999999999999999985 46777899999999999999999999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      +++.+++.+.+...     + .++++|.|++|+|++||+..+.++++|++++++|+|.||+++||++|||||+|||++.+
T Consensus       335 ~i~~~~~~~~v~~~-----~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~  408 (561)
T PRK13748        335 QVAHVDGEFVLTTG-----H-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP  408 (561)
T ss_pred             EEEecCCEEEEEec-----C-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc
Confidence            99876665555432     2 36999999999999999987667889999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      .+.+.|..||++||.||++...++++...|.++|++|+++++|+||++|+..|+++.+..+++....++....++++|+|
T Consensus       409 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  488 (561)
T PRK13748        409 QFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIK  488 (561)
T ss_pred             cchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEE
Confidence            99999999999999999987666788889999999999999999999999999999999988888777766667789999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |++|+++++|||+|++|+++.|+|+.+++||..+
T Consensus       489 li~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  522 (561)
T PRK13748        489 LVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNR  522 (561)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999854

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5e-66  Score=520.07  Aligned_cols=420  Identities=46%  Similarity=0.759  Sum_probs=368.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+|||+||||||||++||..|++.|++|+|||+ +.+||+|.+.+|+|++.+++....++.... +..+|+......+++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~-~~~~gi~~~~~~~~~   79 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKH-AEEFGIHADGPKIDF   79 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHH-HHhcCCCcCCCccCH
Confidence            459999999999999999999999999999999 789999999999999999988877766544 356676654457899


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCCCCCCc-cCC
Q 011787          122 PAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKSLPGIT-IDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~~~g~~-~~~  198 (477)
                      ..+..+.++....+...+ ...++..+++++.+.+.+++.+.+.+   ++  .++.||+||||||++ | .+|+.. ...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~~p-~ipg~~~~~~  153 (460)
T PRK06292         80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSRVP-PIPGVWLILG  153 (460)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCCCC-CCCCCcccCC
Confidence            999998888887776666 56667789999999999998887766   34  679999999999999 4 345543 234


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ..+++.++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+++.|+++ |++++++++
T Consensus       154 ~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v  232 (460)
T PRK06292        154 DRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKV  232 (460)
T ss_pred             CcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEE
Confidence            5677888888777889999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             EEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          279 VGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       279 ~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      .+++.+++ .+.++.   .++++.++++|.+++++|++||++.+.++..|++++++|+|.||+++||++|+|||+|||++
T Consensus       233 ~~i~~~~~~~v~~~~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~  309 (460)
T PRK06292        233 TSVEKSGDEKVEELE---KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNG  309 (460)
T ss_pred             EEEEEcCCceEEEEE---cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCC
Confidence            99986654 344332   22355689999999999999999977678889999989999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCce
Q 011787          358 GPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG  436 (477)
Q Consensus       358 ~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (477)
                      .+++++.|..||+.||.||++. ....++..+|+.+|++|+++++|+||++|++.|+++.+..++++...++...++++|
T Consensus       310 ~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  389 (460)
T PRK06292        310 KPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDG  389 (460)
T ss_pred             CccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCe
Confidence            9999999999999999999984 445677889999999999999999999999999999999999998889888788899


Q ss_pred             EEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          437 IVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       437 ~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       390 ~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~  426 (460)
T PRK06292        390 FVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQG  426 (460)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999865

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.5e-65  Score=513.13  Aligned_cols=406  Identities=31%  Similarity=0.535  Sum_probs=348.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.|||+||||||||++||..|+++|++|+|||+.+ .+||+|.+.+|+|++.++.....                  ..+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~------------------~~~   63 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------------------HTD   63 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhcc------------------CCC
Confidence            35999999999999999999999999999999965 58999999999999876543210                  245


Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~~  197 (477)
                      |.....+.+.....+.... ....+..+++++.+++.+++.+.+.|.+.++ ..++.||+||||||++|..  +|++.. 
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g-~~~~~~d~lviATGs~p~~p~i~G~~~-  141 (441)
T PRK08010         64 FVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEG-NLEIHGEKIFINTGAQTVVPPIPGITT-  141 (441)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCC-eEEEEeCEEEEcCCCcCCCCCCCCccC-
Confidence            6666666655554443322 2333445999999999999999998887666 2369999999999999854  445421 


Q ss_pred             CceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      ...++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.|+++||+++++++
T Consensus       142 ~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~  221 (441)
T PRK08010        142 TPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAH  221 (441)
T ss_pred             CCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCE
Confidence            23477778777777789999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      +++++.+++.+.+...     + .++++|.+++|+|++||++.+.++.+|++++++|+|.||+++||++|||||+|||++
T Consensus       222 v~~i~~~~~~v~v~~~-----~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~  295 (441)
T PRK08010        222 VERISHHENQVQVHSE-----H-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTG  295 (441)
T ss_pred             EEEEEEcCCEEEEEEc-----C-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCC
Confidence            9999876666555432     2 358999999999999999876677889999888999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHcCC-CC-CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787          358 GPMLAHKAEEDGVACVEFLAGK-HG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       358 ~~~~~~~A~~~g~~aa~~i~~~-~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (477)
                      .+++++.|..||+++++||+++ .. ...+..+|.++|++|+++++|+||+||++.|+++.+..+++....++..+++++
T Consensus       296 ~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  375 (441)
T PRK08010        296 GLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTR  375 (441)
T ss_pred             CccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCc
Confidence            9999999999999999999985 22 246778999999999999999999999999999999999999999998888889


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |++|+++|++|++|||+|++|+++.|+||.+++||.++
T Consensus       376 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  413 (441)
T PRK08010        376 GVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAG  413 (441)
T ss_pred             eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999865

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=4.2e-65  Score=513.83  Aligned_cols=425  Identities=52%  Similarity=0.847  Sum_probs=380.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.+|+|++.++.....++... ....+++......++|.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~   78 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIK-HAKDYGIEVENVSVDWE   78 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHH-HHHhcCCCCCCCcCCHH
Confidence            38999999999999999999999999999999 89999999999999999988888777666 36667776666678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC-CccCCceE
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG-ITIDEKRI  201 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g-~~~~~~~~  201 (477)
                      .+..+.+...+.+...+...+++.+++++.+++.+++++.+.+...++ ..++.||+||||||++|..+|. ++.+...+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g-~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~  157 (461)
T TIGR01350        79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENG-EETLTAKNIIIATGSRPRSLPGPFDFDGEVV  157 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCC-cEEEEeCEEEEcCCCCCCCCCCCCCCCCceE
Confidence            999988888888888888889999999999999999999988886654 2579999999999999976655 34445578


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      ++.++...+...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++++.++
T Consensus       158 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i  237 (461)
T TIGR01350       158 ITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV  237 (461)
T ss_pred             EcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            88888888878899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML  361 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~  361 (477)
                      +.+++++.+...   +++..++++|.+++|+|.+|+...+.++..++.++++|++.||+++||+.|+|||+|||++.+.+
T Consensus       238 ~~~~~~v~v~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~  314 (461)
T TIGR01350       238 EKNDDQVVYENK---GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPML  314 (461)
T ss_pred             EEeCCEEEEEEe---CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCccc
Confidence            877777665543   12235799999999999999998655788899999999999999999999999999999998999


Q ss_pred             hhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEE
Q 011787          362 AHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI  440 (477)
Q Consensus       362 ~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  440 (477)
                      ++.|..||+.+|+||.+... .+++...|.+.|++|+++++|+++++++..|+++.+...++....++...+++++++|+
T Consensus       315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl  394 (461)
T TIGR01350       315 AHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKI  394 (461)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEE
Confidence            99999999999999998664 67788899999999999999999999999999999999998888888877788999999


Q ss_pred             EEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          441 LAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       441 ~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++|+++++|||+|++|+++.|+|+.+++||..+
T Consensus       395 ~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  427 (461)
T TIGR01350       395 IADKKTGEILGAHIIGPHATELISEAVLAMELE  427 (461)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999854

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=1e-64  Score=510.69  Aligned_cols=423  Identities=27%  Similarity=0.406  Sum_probs=355.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--------CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK  113 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--------~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~  113 (477)
                      .+|||+||||||||++||..|++.|++|+|||+..        .+||+|++.+|+|++.++..+...+...+....+|+.
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~   83 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK   83 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence            36899999999999999999999999999999631        4899999999999999888888777665544567776


Q ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787          114 FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG  193 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g  193 (477)
                      ... .++|..+..+....+..+...+...++..+|+++.+.+.+.+.+.+.+... +....+.||+||||||++|..++.
T Consensus        84 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~p~~  161 (499)
T PTZ00052         84 TSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSIPED  161 (499)
T ss_pred             CCC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCCCCC
Confidence            544 789999999999988888777777777789999999999988888877632 223679999999999999864432


Q ss_pred             CccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787          194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~  273 (477)
                      ++......++++++..+...+++++|||+|++|+|+|..|++.|.+||++.+. .+++.+|+++.+.+++.|+++||+++
T Consensus       162 i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~  240 (499)
T PTZ00052        162 VPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFL  240 (499)
T ss_pred             CCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEE
Confidence            22222345677888777778899999999999999999999999999999874 66788999999999999999999999


Q ss_pred             eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEec
Q 011787          274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG  353 (477)
Q Consensus       274 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~G  353 (477)
                      +++.+++++..++.+.+.+.     +++++++|.|++++|++||++.+.++.++++++++|++.+++. +|+.|+|||+|
T Consensus       241 ~~~~v~~v~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiG  314 (499)
T PTZ00052        241 EGVVPINIEKMDDKIKVLFS-----DGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVG  314 (499)
T ss_pred             cCCeEEEEEEcCCeEEEEEC-----CCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEE
Confidence            99999999876555555553     3457899999999999999998767888999999898777777 99999999999


Q ss_pred             ccCC-CCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCccccch
Q 011787          354 DVIP-GPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAK  429 (477)
Q Consensus       354 D~~~-~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  429 (477)
                      ||+. .|.+++.|.+||+++|+||++.. ...++..+|+++|++|+++++|+||+||++. + .++.+...++.......
T Consensus       315 Dv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~  394 (499)
T PTZ00052        315 DVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA  394 (499)
T ss_pred             EecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc
Confidence            9984 67899999999999999999754 3467888999999999999999999999987 4 46888777765433222


Q ss_pred             hc---------------CCCceEEEEEEEC-CCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          430 AI---------------DDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       430 ~~---------------~~~~~~~k~~~~~-~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ..               .+++||+|+++|+ +|++|||+|++|++|+|||+.+++||.++
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~  454 (499)
T PTZ00052        395 VHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLG  454 (499)
T ss_pred             cccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            11               1368999999997 48999999999999999999999999854

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.6e-65  Score=456.76  Aligned_cols=424  Identities=32%  Similarity=0.511  Sum_probs=375.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc-cccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVE  118 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~  118 (477)
                      ....+|.+|||||..|+++|+++++.|.++.|+|....+||+|.+.||+|++.++..+.....+. ....+|++. ....
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~-da~~yG~~~~~~~~   95 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEME-DAKDYGFPINEEGS   95 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhh-hhhhcCCccccccC
Confidence            44579999999999999999999999999999999779999999999999999988777665544 357789887 5678


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC--CCCCCCcc
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV--KSLPGITI  196 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~--~~~~g~~~  196 (477)
                      ++|..+.+.++.++.++...|+..+.+..|+++.|+++++++.++.|...+|....+++++++||||++|  |.+||.  
T Consensus        96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~--  173 (478)
T KOG0405|consen   96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGA--  173 (478)
T ss_pred             CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCch--
Confidence            9999999999999999999999999999999999999999999999999998666799999999999999  456664  


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                        ..-++++.++++++.|++++|+|+|++++|+|..++.+|.+++++-|.+.+++.||+.++..+.+.++.+||+++.++
T Consensus       174 --E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s  251 (478)
T KOG0405|consen  174 --ELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNS  251 (478)
T ss_pred             --hhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccc
Confidence              345788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                      .++++....++..+....    .+....+|.++||+|+.||+..|.+++.|++++.+|.|.||++.+||+|+||++||++
T Consensus       252 ~~~~v~K~~~g~~~~i~~----~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~  327 (478)
T KOG0405|consen  252 SVTKVIKTDDGLELVITS----HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT  327 (478)
T ss_pred             cceeeeecCCCceEEEEe----ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc
Confidence            999998776664433321    3455669999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHcC--CCCCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCccccchhcC
Q 011787          357 PGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAKAID  432 (477)
Q Consensus       357 ~~~~~~~~A~~~g~~aa~~i~~--~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  432 (477)
                      +...+++.|...|+..++.+++  ++.+.+|.++|+++|.+|+++++||||+||.+. | -++.+..-.|.....+....
T Consensus       328 gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~  407 (478)
T KOG0405|consen  328 GKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGR  407 (478)
T ss_pred             CcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcC
Confidence            9999999999999999999996  456789999999999999999999999999765 3 44554432233223333334


Q ss_pred             CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcC
Q 011787          433 DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHD  472 (477)
Q Consensus       433 ~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~  472 (477)
                      ..+.++||+++.++.+++|+|++|+.+.|+++.++.|+-+
T Consensus       408 k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKm  447 (478)
T KOG0405|consen  408 KEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKM  447 (478)
T ss_pred             CcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheec
Confidence            5678999999999999999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=5.3e-64  Score=501.51  Aligned_cols=405  Identities=31%  Similarity=0.534  Sum_probs=352.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC-CCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +|||+||||||||++||..|++.|++|+||||++. +||+|.+.+|+|++.++.....                  ..+|
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~------------------~~~~   64 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK------------------NLSF   64 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc------------------CCCH
Confidence            59999999999999999999999999999999764 7999999999999987654431                  2467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCccCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEK  199 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~~~~  199 (477)
                      ..+..+.+.....+.......+.+.+|+++.+++.+++.+.+.+...+ ....+.||+||||||++|..  +||.. +..
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~-~~~~~~~d~vViATGs~~~~p~i~G~~-~~~  142 (438)
T PRK07251         65 EQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPIPGLA-DSK  142 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCC-CcEEEEcCEEEEeCCCCCCCCCCCCcC-CCC
Confidence            777777776666666666677888899999999999888877776422 23579999999999999854  45542 234


Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .++++.++..+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++..++++.+.+.+.++++||+++++++++
T Consensus       143 ~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~  222 (438)
T PRK07251        143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTT  222 (438)
T ss_pred             cEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            57888888887778999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      +++.+++.+.+..      +++++++|.+++|+|++|+.+.+.++..++..+++|++.||+++||+.|||||+|||++.+
T Consensus       223 ~i~~~~~~v~v~~------~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~  296 (438)
T PRK07251        223 EVKNDGDQVLVVT------EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGP  296 (438)
T ss_pred             EEEecCCEEEEEE------CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCc
Confidence            9987655554432      3468999999999999999987767777888888899999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCCC--CCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceE
Q 011787          360 MLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI  437 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (477)
                      .+.+.|..+|+.++.++++...  ..++..+|+.+|++|+++++|+|+++|+..|+++.+..+++....++...++.+|+
T Consensus       297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  376 (438)
T PRK07251        297 QFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGA  376 (438)
T ss_pred             ccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEE
Confidence            9999999999999999987542  23567889999999999999999999999999999999999888888777888899


Q ss_pred             EEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          438 VKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       438 ~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|+++|++|++|||+|++|++|.|+|+.+++||.++
T Consensus       377 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  412 (438)
T PRK07251        377 FKVVVNTETKEILGATLFGEGSQEIINLITMAMDNK  412 (438)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999854

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-55  Score=391.28  Aligned_cols=427  Identities=32%  Similarity=0.528  Sum_probs=357.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG  111 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g  111 (477)
                      .+.+||++|||||.+||+||.+++..|.+|.++|--        .-+||+|.|.||+|++.+...+ ..-...+....+|
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAa-llG~al~da~kyG   94 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAA-LLGEALHDARKYG   94 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHH-HHHHHHHHHHhhC
Confidence            356799999999999999999999999999999831        1357999999999998775444 4444455567888


Q ss_pred             ccccc--cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          112 VKFSS--VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       112 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      +...+  ...+|..+.......+..+...+.-.+++..|++++....|++++++.....+|+.+.+.++.+|||||.+|+
T Consensus        95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr  174 (503)
T KOG4716|consen   95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR  174 (503)
T ss_pred             CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence            88754  7899999998888888877777777778889999999999999999999988888889999999999999995


Q ss_pred             --CCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 011787          190 --SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK  267 (477)
Q Consensus       190 --~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~  267 (477)
                        .+||   ..+.-++++|++.+...|.+.+|||+|+.++|+|..|+-+|.+||++.|+= ++..||.++.+.+.+.|++
T Consensus       175 Yp~IpG---~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI-~LrGFDqdmae~v~~~m~~  250 (503)
T KOG4716|consen  175 YPDIPG---AKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI-LLRGFDQDMAELVAEHMEE  250 (503)
T ss_pred             CCCCCC---ceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe-ecccccHHHHHHHHHHHHH
Confidence              4454   456789999999999999999999999999999999999999999998764 5789999999999999999


Q ss_pred             cCcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecC-CCCeecCCCCCCC
Q 011787          268 QKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATN  345 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~g~i~vd~~l~t~  345 (477)
                      +||.|...+.+..++..+ +...+......++++.+-++|.|+||+|+.+.+..++++.+|+..|+ .|.|++|+.-+|+
T Consensus       251 ~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~  330 (503)
T KOG4716|consen  251 RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATN  330 (503)
T ss_pred             hCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcC
Confidence            999999888888887654 44555555545556667889999999999999999999999999965 5899999999999


Q ss_pred             CCCeEEecccC-CCCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEe
Q 011787          346 IPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFP  421 (477)
Q Consensus       346 ~~~vya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~  421 (477)
                      +|+|||+||+. +.|.+++.|.+.|+..|+.+++. ....+|..+|+.+|+..|++++|++|++|.+. | -++++.+-.
T Consensus       331 vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~  410 (503)
T KOG4716|consen  331 VPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSY  410 (503)
T ss_pred             CCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeecc
Confidence            99999999998 56889999999999999999864 45579999999999999999999999998654 3 334443322


Q ss_pred             cCccccchh-cCCCceEEEEEEEC-CCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787          422 FLANSRAKA-IDDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMATH  471 (477)
Q Consensus       422 ~~~~~~~~~-~~~~~~~~k~~~~~-~~~~i~G~~~~g~~~~~~~~~~~~~~~  471 (477)
                      |.-...... .+...+|+|.+..+ ++.+|+|.|++|+.|+|.++.+|.|+-
T Consensus       411 f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk  462 (503)
T KOG4716|consen  411 FKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALK  462 (503)
T ss_pred             ccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHH
Confidence            221111111 13356899999985 567999999999999999999999874

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.1e-53  Score=425.82  Aligned_cols=377  Identities=21%  Similarity=0.321  Sum_probs=290.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+|||||||+||++||.+|++.  +.+|+|||+++.++    +..| .|...               . ..+.      .
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~lp~~~---------------~-~~~~------~   55 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCALPYYI---------------G-EVVE------D   55 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCCcchhh---------------c-CccC------C
Confidence            4899999999999999999987  68999999976542    1111 11100               0 0000      0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEE-eEEEEecCCEEEEEecCC---ceEEEEecEEEEccCCCCCCCCCCcc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISPSEVSVDTIEG---GNTVVKGKNIIIATGSDVKSLPGITI  196 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~v~~~~g---~~~~i~~d~lvlAtG~~~~~~~g~~~  196 (477)
                      ......          ...+.+.++.+++++. ..+..+|.+...|.+.++   +..++.||+||||||++|+.++ .+ 
T Consensus        56 ~~~~~~----------~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~-~~-  123 (438)
T PRK13512         56 RKYALA----------YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG-FE-  123 (438)
T ss_pred             HHHccc----------CCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC-CC-
Confidence            000000          0012334567899875 578888877666655432   2345799999999999996544 32 


Q ss_pred             CCceEecc---hhhhcc-----cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787          197 DEKRIVSS---TGALAL-----NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       197 ~~~~~~~~---~~~~~~-----~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~  268 (477)
                       ...+++.   .+...+     ...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|+++
T Consensus       124 -~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~  202 (438)
T PRK13512        124 -SDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKR  202 (438)
T ss_pred             -CCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence             2334433   222221     2347999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      ||++++++++++++.  .  .+++.     +++.+++|.|++|+|++||+++  +++.|+.++++|+|.||+++||++||
T Consensus       203 gI~i~~~~~v~~i~~--~--~v~~~-----~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~~  271 (438)
T PRK13512        203 EIPYRLNEEIDAING--N--EVTFK-----SGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVPN  271 (438)
T ss_pred             CCEEEECCeEEEEeC--C--EEEEC-----CCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCCC
Confidence            999999999999953  2  34443     3457999999999999999986  67788988888999999999999999


Q ss_pred             eEEecccCC----------CCCchhHHHHHHHHHHHHHcCCCC-CC-CCCCCceEEEcCCCeeeecCCHHHHHHcCCCEE
Q 011787          349 VYAIGDVIP----------GPMLAHKAEEDGVACVEFLAGKHG-HV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR  416 (477)
Q Consensus       349 vya~GD~~~----------~~~~~~~A~~~g~~aa~~i~~~~~-~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~  416 (477)
                      |||+|||++          .+.+++.|.+||+++|+||++... .+ .+..+|.+.|++|+++++|+||+||+..  ++.
T Consensus       272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~--~~~  349 (438)
T PRK13512        272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF--DYK  349 (438)
T ss_pred             EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC--CcE
Confidence            999999985          245788899999999999998643 23 4567889999999999999999999875  466


Q ss_pred             EEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787          417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK  473 (477)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~  473 (477)
                      +..+++....+.. .+++.||+|+++|+++++|||+|++|++ +.|+|+.+++||..+
T Consensus       350 ~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~  406 (438)
T PRK13512        350 MVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQ  406 (438)
T ss_pred             EEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcC
Confidence            6666665444433 4677899999999999999999999997 899999999999854

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=2.5e-52  Score=419.23  Aligned_cols=381  Identities=28%  Similarity=0.333  Sum_probs=289.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +|||||||+||+++|..|++.+  .+|+|||+++.++-    ..| .|..    ..             +..     ...
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~----~~~~~~~~----~~-------------~~~-----~~~   55 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF----GACGLPYF----VG-------------GFF-----DDP   55 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee----ecCCCceE----ec-------------ccc-----CCH
Confidence            7999999999999999999874  58999999765431    111 1100    00             000     000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecC---CceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIE---GGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~---g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                                 ..+.....+.+.+.+++++.+ .+..++.+...|...+   +....+.||+||||||++|..  +|+.+
T Consensus        56 -----------~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~  124 (444)
T PRK09564         56 -----------NTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNIN  124 (444)
T ss_pred             -----------HHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcC
Confidence                       000111123455678998754 6777776554444432   322234499999999999853  44443


Q ss_pred             cCCceEecc---hhhhccc-----CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHH
Q 011787          196 IDEKRIVSS---TGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLE  266 (477)
Q Consensus       196 ~~~~~~~~~---~~~~~~~-----~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~  266 (477)
                        ...+++.   .+...+.     ..+++++|||+|++|+|+|..+++.|.+|+++++.+++++ .+++++.+.+.+.++
T Consensus       125 --~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~  202 (444)
T PRK09564        125 --LENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELR  202 (444)
T ss_pred             --CCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHH
Confidence              2334433   2233222     2478999999999999999999999999999999988876 589999999999999


Q ss_pred             hcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCC
Q 011787          267 KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI  346 (477)
Q Consensus       267 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~  346 (477)
                      +.||++++++++.+++.+++...+..      ++.++++|.+++|+|++||.+.  +++.|++++++|+|.||+++||++
T Consensus       203 ~~gI~v~~~~~v~~i~~~~~~~~v~~------~~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~  274 (444)
T PRK09564        203 ENGVELHLNEFVKSLIGEDKVEGVVT------DKGEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETSI  274 (444)
T ss_pred             HCCCEEEcCCEEEEEecCCcEEEEEe------CCCEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccCC
Confidence            99999999999999965433323332      2347999999999999999876  678889888889999999999999


Q ss_pred             CCeEEecccCCC----------CCchhHHHHHHHHHHHHHcCCCCCCCCCCCce-EEEcCCCeeeecCCHHHHHHcCCCE
Q 011787          347 PGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPG-VVYTHPEVASVGKTEEQVKELGVEY  415 (477)
Q Consensus       347 ~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~-~~~~~~~~~~~G~~~~~~~~~~~~~  415 (477)
                      |||||+|||+..          +++++.|.+||+++|+||++....++....+. ..|++|+++++|+|++|+++.|+++
T Consensus       275 ~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~  354 (444)
T PRK09564        275 ENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDY  354 (444)
T ss_pred             CCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCe
Confidence            999999999953          45889999999999999998765555444443 5599999999999999999999999


Q ss_pred             EEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787          416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK  473 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~  473 (477)
                      .+..++.. ..+....+.+.+|+|+++|++|++|||+|++|++ +.|+|+.+++||.++
T Consensus       355 ~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~  412 (444)
T PRK09564        355 KTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAK  412 (444)
T ss_pred             EEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCC
Confidence            99887643 3334445667899999999999999999999996 889999999999855

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=3.6e-46  Score=372.26  Aligned_cols=320  Identities=23%  Similarity=0.309  Sum_probs=257.4

Q ss_pred             HhhhCCeEEEE-eEEEEecCCEEEEEecCC-ceEEEE--ecEEEEccCCCCCCC--CCCccCCceEecchhhhc---c--
Q 011787          142 LFKKNKVTYVK-GYGKFISPSEVSVDTIEG-GNTVVK--GKNIIIATGSDVKSL--PGITIDEKRIVSSTGALA---L--  210 (477)
Q Consensus       142 ~~~~~~v~~~~-~~~~~~~~~~~~v~~~~g-~~~~i~--~d~lvlAtG~~~~~~--~g~~~~~~~~~~~~~~~~---~--  210 (477)
                      ++.+.+++++. ..+..++.....+.+.++ ....+.  ||+||||||++|..+  ||.+  ...+++..+...   +  
T Consensus        53 ~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~--~~~v~~~~~~~~~~~~~~  130 (427)
T TIGR03385        53 FIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGIN--LDIVFTLRNLEDTDAIKQ  130 (427)
T ss_pred             HHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcC--CCCEEEECCHHHHHHHHH
Confidence            44667899864 467777755544443321 124567  999999999998543  4432  233444333221   1  


Q ss_pred             ---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC
Q 011787          211 ---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD  286 (477)
Q Consensus       211 ---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~  286 (477)
                         ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+ .+.+++++.+.+.+.|++.||++++++.+.+++.++.
T Consensus       131 ~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~  210 (427)
T TIGR03385       131 YIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER  210 (427)
T ss_pred             HHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC
Confidence               134789999999999999999999999999999999887 4678899999999999999999999999999976543


Q ss_pred             eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC--------
Q 011787          287 GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG--------  358 (477)
Q Consensus       287 ~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~--------  358 (477)
                       + +.+.     +++++++|.+++|+|.+|+.+.  ++.+|+.++++|+|.||++++|+.|+|||+|||+..        
T Consensus       211 -~-v~~~-----~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~  281 (427)
T TIGR03385       211 -V-KVFT-----SGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKP  281 (427)
T ss_pred             -E-EEEc-----CCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCc
Confidence             3 3332     4568999999999999999886  677889988889999999999999999999999952        


Q ss_pred             --CCchhHHHHHHHHHHHHHcCCCCCCC-CCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787          359 --PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       359 --~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (477)
                        +++++.|.+||+++|+||++....++ +...|.+.|++|+++++|+|+++|++.|+++.+..+++....++. .+.+.
T Consensus       282 ~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~-~~~~~  360 (427)
T TIGR03385       282 AWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYY-PGNSP  360 (427)
T ss_pred             eeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcC-CCCce
Confidence              35789999999999999998754332 235688999999999999999999999999999887765544433 36678


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~  473 (477)
                      |++|+++|++|++|||+|++|++ +.|+|+.+++||.++
T Consensus       361 g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~  399 (427)
T TIGR03385       361 LHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAG  399 (427)
T ss_pred             EEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCC
Confidence            99999999999999999999999 999999999999865

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=7.8e-44  Score=374.95  Aligned_cols=367  Identities=20%  Similarity=0.284  Sum_probs=275.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC----CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      +.+|||||+|+||+.+|.+|++.    +++|+||++++.++    +..+..+.              .+..  .      
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~~L~~--------------~~~~--~------   56 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRVHLSS--------------YFSH--H------   56 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCCcchH--------------hHcC--C------
Confidence            35899999999999999999864    47999999976542    00000000              0000  0      


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                       ..           +.+......++++.+++++.++ +..+|.....|.+.+|  ..+.||+||||||++|..  +||.+
T Consensus        57 -~~-----------~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~  122 (847)
T PRK14989         57 -TA-----------EELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSE  122 (847)
T ss_pred             -CH-----------HHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCC
Confidence             00           0111112345667899999885 7778888888888777  679999999999999854  45544


Q ss_pred             cCCceEe-cchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCc
Q 011787          196 IDEKRIV-SSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       196 ~~~~~~~-~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv  270 (477)
                      ......+ +..++..+   ...+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+|++..+.+.+.|+++||
T Consensus       123 ~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV  202 (847)
T PRK14989        123 TQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGV  202 (847)
T ss_pred             CCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCC
Confidence            3222222 45555443   23578999999999999999999999999999999999887 6899999999999999999


Q ss_pred             EEEeCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          271 KFMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      ++++++.++++..++  ....+.+.     +++++++|.|++|+|.+||.++  ++.+|+.++++|+|.||++|||++|+
T Consensus       203 ~v~~~~~v~~I~~~~~~~~~~v~~~-----dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p~  275 (847)
T PRK14989        203 RVHTSKNTLEIVQEGVEARKTMRFA-----DGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDPD  275 (847)
T ss_pred             EEEcCCeEEEEEecCCCceEEEEEC-----CCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCCC
Confidence            999999999997543  23344543     5678999999999999999985  67889999999999999999999999


Q ss_pred             eEEecccCCCC----CchhHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEcCCCeeeecCCHHHHHHcCCCEEEEEEecC
Q 011787          349 VYAIGDVIPGP----MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV-VYTHPEVASVGKTEEQVKELGVEYRVGKFPFL  423 (477)
Q Consensus       349 vya~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  423 (477)
                      |||+|||+..+    .+++.|..||++||+||++....++....+.. ...+.+++++|...      +.+.        
T Consensus       276 IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~~~lk~~G~~v~s~G~~~------~~~~--------  341 (847)
T PRK14989        276 IYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLKLLGVDVGGIGDAH------GRTP--------  341 (847)
T ss_pred             EEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccceEEEECCcceEeccccc------CCCC--------
Confidence            99999999643    37889999999999999998766666666643 34555777777211      1100        


Q ss_pred             ccccch-hcC-CCceEEEEEEECCCCeEEEEEEEcCCh--HHHHHHHHHHhc
Q 011787          424 ANSRAK-AID-DAEGIVKILAEKETDKILGVHIMAPNA--GELIHEAAMATH  471 (477)
Q Consensus       424 ~~~~~~-~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~--~~~~~~~~~~~~  471 (477)
                       ..... +.+ .+.+|.|+++++++++|+|++++|+.+  .++++.+..++.
T Consensus       342 -~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~  392 (847)
T PRK14989        342 -GARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE  392 (847)
T ss_pred             -CceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCC
Confidence             00111 123 347899999999999999999999965  888888865543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=5.5e-42  Score=338.07  Aligned_cols=348  Identities=19%  Similarity=0.241  Sum_probs=250.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ..+|||||||+||++||..|++.+.  +|+|++++....    +..+.-++.++             .. .. ...... 
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~l~~~~~-------------~~-~~-~~~~~~-   62 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPPLSKSML-------------LE-DS-PQLQQV-   62 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCCCCHHHH-------------CC-CC-cccccc-
Confidence            4689999999999999999999875  799999864331    00000000000             00 00 000000 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK  199 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~  199 (477)
                                       ...+++.+.+++++.+ .+..+|.....+.+.+|  ..+.||+||||||++|+.+|..+....
T Consensus        63 -----------------~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~  123 (396)
T PRK09754         63 -----------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGE  123 (396)
T ss_pred             -----------------CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCC
Confidence                             0123455679999988 57788888778877777  679999999999999976665443344


Q ss_pred             eEec---chhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEE
Q 011787          200 RIVS---STGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       200 ~~~~---~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      .+++   .+++..+.   ..+++++|||+|++|+|+|..|++.|.+||++++.+++++ .+++...+.+.+.++++||++
T Consensus       124 ~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i  203 (396)
T PRK09754        124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRI  203 (396)
T ss_pred             CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEE
Confidence            4554   34544433   2478999999999999999999999999999999998876 468888889999999999999


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      ++++.+++++. ++.+.+.+.     +++++++|.|++++|.+||..+  ++..|+..+  ++|.||+++||+.|+|||+
T Consensus       204 ~~~~~V~~i~~-~~~~~v~l~-----~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~IyA~  273 (396)
T PRK09754        204 LLNNAIEHVVD-GEKVELTLQ-----SGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAG  273 (396)
T ss_pred             EeCCeeEEEEc-CCEEEEEEC-----CCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCEEEc
Confidence            99999999975 445555554     4568999999999999999874  566777654  5799999999999999999


Q ss_pred             cccCCC---------CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecC
Q 011787          353 GDVIPG---------PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFL  423 (477)
Q Consensus       353 GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  423 (477)
                      |||+..         +.+|+.|..||++||+||++....++.....+...++..+.++|....+      .+ ...    
T Consensus       274 GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~------~~-~~~----  342 (396)
T PRK09754        274 GDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD------DW-LCR----  342 (396)
T ss_pred             cceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeCCCCC------EE-EEe----
Confidence            999942         1367899999999999999876543333333444556788888865431      11 000    


Q ss_pred             ccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC
Q 011787          424 ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN  458 (477)
Q Consensus       424 ~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~  458 (477)
                      .      ..+...|+.+++  ++++|+|+..+|..
T Consensus       343 ~------~~~~~~~~~~~~--~~~~l~g~~~~~~~  369 (396)
T PRK09754        343 G------NPETQKAIWFNL--QNGVLIGAVTLNQG  369 (396)
T ss_pred             c------CCCCceEEEEEe--eCCEEEEEEEECCH
Confidence            0      012223444444  46999999999974

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=8.8e-40  Score=320.73  Aligned_cols=349  Identities=21%  Similarity=0.324  Sum_probs=249.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +++||||||+||+++|..|++.  +.+|+||++++..    .+..  |   .+  ...       +. .+..       .
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~~--~---~l--~~~-------~~-~~~~-------~   56 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNK--P---DL--SHV-------FS-QGQR-------A   56 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcCc--C---cC--cHH-------Hh-CCCC-------H
Confidence            5899999999999999999886  4689999986431    0000  0   00  000       00 0000       0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~  198 (477)
                      .++          ......+++++++++++.+ .+..++.....+.+ ++  ..+.||+||||||++|..+  |+..  .
T Consensus        57 ~~~----------~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~p~i~G~~--~  121 (377)
T PRK04965         57 DDL----------TRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFVPPIPGRE--L  121 (377)
T ss_pred             HHh----------hcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCCCCCCCCc--e
Confidence            000          0011234566779998865 67788877666665 34  5799999999999998543  3432  1


Q ss_pred             ceEecchh---hhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHhcCcE
Q 011787          199 KRIVSSTG---ALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       199 ~~~~~~~~---~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gv~  271 (477)
                        +++..+   +...   ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. ++++....+++.+++.||+
T Consensus       122 --v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~  199 (377)
T PRK04965        122 --MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVH  199 (377)
T ss_pred             --EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCE
Confidence              444333   2221   134789999999999999999999999999999999988764 6888999999999999999


Q ss_pred             EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      +++++++.+++.+++...+.+.     +++++++|.+|+|+|.+|+..+  ++..|+..+.  ++.||+++||+.|||||
T Consensus       200 i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~--gi~vd~~l~ts~~~VyA  270 (377)
T PRK04965        200 LLLKSQLQGLEKTDSGIRATLD-----SGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR--GIVVDSYLQTSAPDIYA  270 (377)
T ss_pred             EEECCeEEEEEccCCEEEEEEc-----CCcEEECCEEEECcCCCcchHH--HHHCCCCcCC--CEEECCCcccCCCCEEE
Confidence            9999999999877666666654     5678999999999999999875  5677887753  49999999999999999


Q ss_pred             ecccCCCC----CchhHHHHHHHHHHHHHcCCCCCCCCCCCce-EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccc
Q 011787          352 IGDVIPGP----MLAHKAEEDGVACVEFLAGKHGHVDYDKVPG-VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANS  426 (477)
Q Consensus       352 ~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  426 (477)
                      +|||+..+    ..+..|..||+++|+||++.+..+..+..+. ..+.+.++.++|....+    ..             
T Consensus       271 ~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~-------------  333 (377)
T PRK04965        271 LGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ----DL-------------  333 (377)
T ss_pred             eeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC----Cc-------------
Confidence            99999532    2466799999999999999876555444433 33556678888865431    00             


Q ss_pred             cchhcCCCce-EEEEEEECCCCeEEEEEEEcCChHHHH
Q 011787          427 RAKAIDDAEG-IVKILAEKETDKILGVHIMAPNAGELI  463 (477)
Q Consensus       427 ~~~~~~~~~~-~~k~~~~~~~~~i~G~~~~g~~~~~~~  463 (477)
                      .+...+++++ +.|+++  ++++|+|+.++|+.+.+..
T Consensus       334 ~~~~~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~~  369 (377)
T PRK04965        334 RWQINAESQGMVAKGVD--EAGQLRAFVVSEDRMKEAF  369 (377)
T ss_pred             eEEEEeCCCCeEEEEEc--cCCcEEEEEEEChhHHHHH
Confidence            0111122334 445555  4799999999999876543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=2.8e-39  Score=341.41  Aligned_cols=358  Identities=21%  Similarity=0.282  Sum_probs=259.4

Q ss_pred             EEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           46 VVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        46 vvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      |||||||+||++||.+|++.   +++|+|||+++.++-.    .+..+..              +. ....       ..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~----r~~L~~~--------------l~-g~~~-------~~   54 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN----RILLSSV--------------LQ-GEAD-------LD   54 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc----cccccHH--------------HC-CCCC-------HH
Confidence            68999999999999999875   4699999997654210    0000000              00 0000       00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCccCCc
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEK  199 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~~~~  199 (477)
                                 .+.....+++++.+++++.+ .+..+|...+.|.+.+|  .++.||+||||||+.|..  +||.+..+.
T Consensus        55 -----------~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v  121 (785)
T TIGR02374        55 -----------DITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGV  121 (785)
T ss_pred             -----------HccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCE
Confidence                       01111234566789999987 67888988888888887  689999999999999854  455433222


Q ss_pred             e-Eecchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEe
Q 011787          200 R-IVSSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       200 ~-~~~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      . +.+.+++..+   ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++.....+.+.+++.||++++
T Consensus       122 ~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~  201 (785)
T TIGR02374       122 YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL  201 (785)
T ss_pred             EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEe
Confidence            1 2233343332   23578999999999999999999999999999999998876 58999999999999999999999


Q ss_pred             CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787          275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD  354 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD  354 (477)
                      ++.++++..++....+++.     +++++++|.||+++|.+||..+  ++.+|++.+  |+|.||+++||+.|+|||+||
T Consensus       202 ~~~v~~i~~~~~~~~v~~~-----dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD  272 (785)
T TIGR02374       202 EKDTVEIVGATKADRIRFK-----DGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYAVGE  272 (785)
T ss_pred             CCceEEEEcCCceEEEEEC-----CCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEEeee
Confidence            9999999765544456554     5678999999999999999985  567788776  679999999999999999999


Q ss_pred             cCCCC----CchhHHHHHHHHHHHHHcCCC-CCCCCCCCceE-EEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccc
Q 011787          355 VIPGP----MLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGV-VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRA  428 (477)
Q Consensus       355 ~~~~~----~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (477)
                      |+..+    .++..|..||+++|.||++.. .++......+. .+++.+++++|......     ......  +      
T Consensus       273 ~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-----~~~~~~--~------  339 (785)
T TIGR02374       273 CAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-----RTTSIK--I------  339 (785)
T ss_pred             cceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-----CcEEEE--E------
Confidence            99543    367789999999999999876 44444444433 35667889999654321     111111  0      


Q ss_pred             hhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHH
Q 011787          429 KAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAM  468 (477)
Q Consensus       429 ~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~  468 (477)
                       ....+..|.|++++  +++|+|++++|+.. +.....++
T Consensus       340 -~d~~~~~y~kl~~~--~~rLlGavlvgd~~-~~~~L~~l  375 (785)
T TIGR02374       340 -YDEQKGIYKKLVLS--DDKLLGAVLFGDTS-DYGRLLDM  375 (785)
T ss_pred             -EcCCCCEEEEEEEE--CCEEEEEEEECCHH-HHHHHHHH
Confidence             01234568999997  46899999999754 44444333

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=1.2e-39  Score=309.66  Aligned_cols=284  Identities=26%  Similarity=0.393  Sum_probs=225.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +++|||||||++|+.+|..|.+..  .+|+|||+++..                    .+....++.....+.......+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h--------------------l~~plL~eva~g~l~~~~i~~p   62 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH--------------------LFTPLLYEVATGTLSESEIAIP   62 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc--------------------ccchhhhhhhcCCCChhheecc
Confidence            578999999999999999999974  899999995432                    1111222222222222222222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~  197 (477)
                                        +...+++. +++++.+++..+|.+.++|.+.++  ..+.||+||+|+|+.+.  .+||+...
T Consensus        63 ------------------~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~fgi~G~~E~  122 (405)
T COG1252          63 ------------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADL--GEISYDYLVVALGSETNYFGIPGAAEY  122 (405)
T ss_pred             ------------------HHHHhcccCceEEEEEEEEEEcccCCEEEeCCC--ccccccEEEEecCCcCCcCCCCCHHHh
Confidence                              23444433 599999999999999999999885  68999999999999984  67887766


Q ss_pred             CceEecchhhhcccC-----------CC-----CeeEEEcccHHHHHHHHHHHHcC-------------CcEEEEEeCCC
Q 011787          198 EKRIVSSTGALALNE-----------VP-----KKLVVIGAGYIGLEMGSVWARLG-------------SEVTVVEFAAD  248 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~-----------~~-----~~v~IiG~G~~g~e~a~~l~~~g-------------~~Vtli~~~~~  248 (477)
                      ...+.+.+++.+++.           ..     .+++|+|||++|+|+|..|+.+-             .+|+++++.++
T Consensus       123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~  202 (405)
T COG1252         123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR  202 (405)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence            667777777654321           12     27999999999999998886441             38999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCCCCCCCCccc-c
Q 011787          249 IVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDK-I  326 (477)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-~i~~D~vi~a~G~~p~~~~l~~~~-~  326 (477)
                      ++|.+++++++.+++.|++.||++++++.|++++  ++.+.+.       ++. ++++|.+|||+|.+++..   .++ .
T Consensus       203 ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~~-------~g~~~I~~~tvvWaaGv~a~~~---~~~l~  270 (405)
T COG1252         203 ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTLK-------DGEEEIPADTVVWAAGVRASPL---LKDLS  270 (405)
T ss_pred             hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEEc-------cCCeeEecCEEEEcCCCcCChh---hhhcC
Confidence            9999999999999999999999999999999994  4455543       333 699999999999999886   455 4


Q ss_pred             ceeecCCCCeecCCCCC-CCCCCeEEecccCC------CCCchhHHHHHHHHHHHHHcC
Q 011787          327 GVETDKMGRIPVNERFA-TNIPGVYAIGDVIP------GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       327 gl~~~~~g~i~vd~~l~-t~~~~vya~GD~~~------~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +++.|..|++.||++|| .++|+|||+|||+.      .|+.+..|.+||+++|+||..
T Consensus       271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~  329 (405)
T COG1252         271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA  329 (405)
T ss_pred             hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence            78888889999999999 68999999999993      367899999999999999974

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=5.7e-38  Score=311.60  Aligned_cols=287  Identities=22%  Similarity=0.316  Sum_probs=214.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ..++++|||||||+||+.+|.+|.+.+.+|+|||+++..                    .+...........       .
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~--------------------~~~~~l~~~~~g~-------~   59 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM--------------------LFTPLLPQTTTGT-------L   59 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc--------------------chhhhHHHhcccC-------C
Confidence            345679999999999999999998778899999985432                    0111111110000       0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEe----------cCCceEEEEecEEEEccCCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDT----------IEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~----------~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      +...           +...+...+.+.+++++.+++..+|.....|.+          .+|  .++.||+||||||+.+.
T Consensus        60 ~~~~-----------~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtGs~~~  126 (424)
T PTZ00318         60 EFRS-----------ICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVAHGARPN  126 (424)
T ss_pred             ChHH-----------hHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEECCCcccC
Confidence            1111           111233445567899999999999887766665          234  67999999999999984


Q ss_pred             --CCCCCccCCceEecchhhhccc--------------------CCCCeeEEEcccHHHHHHHHHHHH------------
Q 011787          190 --SLPGITIDEKRIVSSTGALALN--------------------EVPKKLVVIGAGYIGLEMGSVWAR------------  235 (477)
Q Consensus       190 --~~~g~~~~~~~~~~~~~~~~~~--------------------~~~~~v~IiG~G~~g~e~a~~l~~------------  235 (477)
                        .+||.......+.+..++..+.                    ...++++|||+|++|+|+|..|+.            
T Consensus       127 ~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~  206 (424)
T PTZ00318        127 TFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPE  206 (424)
T ss_pred             CCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence              4566542222222333222110                    112489999999999999998875            


Q ss_pred             --cCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          236 --LGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       236 --~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                        .+.+|+++++.+++++.+++.+.+.+++.|+++||+++++++|.++..  +.  +.+.     +++++++|.+|+++|
T Consensus       207 ~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~-----~g~~i~~d~vi~~~G  277 (424)
T PTZ00318        207 LVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLK-----DGEVIPTGLVVWSTG  277 (424)
T ss_pred             ccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEEC-----CCCEEEccEEEEccC
Confidence              368999999999999999999999999999999999999999999953  33  3343     557899999999999


Q ss_pred             CCCCCCCCCccccceeecCCCCeecCCCCC-CCCCCeEEecccCCC-----CCchhHHHHHHHHHHHHHcC
Q 011787          314 RTPFTAGLGLDKIGVETDKMGRIPVNERFA-TNIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       314 ~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~-t~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~  378 (477)
                      .+|+. .  ++.++++.+++|+|.||++|| |++|||||+|||+..     |..+..|++||+++|+||..
T Consensus       278 ~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~  345 (424)
T PTZ00318        278 VGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN  345 (424)
T ss_pred             CCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence            99985 2  567788888889999999999 699999999999963     56888999999999999974

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=7.8e-37  Score=291.72  Aligned_cols=291  Identities=26%  Similarity=0.321  Sum_probs=211.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      |||+|||||+||++||..|++.|.+|+|||+++ .||.+.....+..                +.  ++..   ....  
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~----------------~~--~~~~---~~~~--   56 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVEN----------------YP--GFPE---GISG--   56 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccc----------------cC--CCCC---CCCh--
Confidence            689999999999999999999999999999865 7887654321100                00  0000   0000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCcc-CC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITI-DE  198 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~-~~  198 (477)
                               ..+...+...+++.+++++...+..++..  .+.+.+.++  .++.||+||+|||+.|..  +|+... ..
T Consensus        57 ---------~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~  125 (300)
T TIGR01292        57 ---------PELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLG  125 (300)
T ss_pred             ---------HHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCC
Confidence                     11223344556677888888777666543  356666665  689999999999998753  444321 11


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc-CcEEEeCce
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFMLKTK  277 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~  277 (477)
                      ..+............+++++|||+|.+|+|+|..+++.+.+|+++.+.+.+..  .    ..+.+.++++ ||+++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~--~----~~~~~~l~~~~gv~~~~~~~  199 (300)
T TIGR01292       126 RGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA--E----KILLDRLRKNPNIEFLWNST  199 (300)
T ss_pred             ccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc--C----HHHHHHHHhCCCeEEEeccE
Confidence            22222221112223478999999999999999999999999999999876531  2    3455666776 999999999


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      +++++.++....+++.+..++++.++++|.+++|+|++|+.++  ++.. +.++++|++.||++++|++|||||+|||++
T Consensus       200 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~  276 (300)
T TIGR01292       200 VKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRD  276 (300)
T ss_pred             EEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCEEEeecccC
Confidence            9999865533345554434456678999999999999999875  4555 677788999999999999999999999998


Q ss_pred             -CCCchhHHHHHHHHHHHHHcC
Q 011787          358 -GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       358 -~~~~~~~A~~~g~~aa~~i~~  378 (477)
                       .+..+..|+.||+.||.+|..
T Consensus       277 ~~~~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       277 KGYRQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             cchhhhhhhhhhHHHHHHHHHh
Confidence             677899999999999999863

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=2.1e-35  Score=301.72  Aligned_cols=292  Identities=25%  Similarity=0.316  Sum_probs=205.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...|||+||||||||++||..|++.|++|+|+|+ ..+||+|....++...+                  +..    ...
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~~~~i~~~p------------------g~~----~~~   58 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITITSEVVNYP------------------GIL----NTT   58 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEeccccccCC------------------CCc----CCC
Confidence            3469999999999999999999999999999999 57899876543321100                  000    001


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc-
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT-  195 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~-  195 (477)
                      ..           .+...+....+..+++++.+.+..++..  .+.+.+.++   .+.+++||||||++|+.  +||.. 
T Consensus        59 ~~-----------~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~~~ipG~~~  124 (555)
T TIGR03143        59 GP-----------ELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASPRKLGFPGEEE  124 (555)
T ss_pred             HH-----------HHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCccCCCCCCCHHH
Confidence            11           1222233445566888887777666543  345665554   58899999999999854  34432 


Q ss_pred             cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      .....+............+++++|||||++|+|+|..|++.|.+|+++++.+.+..  +...   ..+.++.+||+++++
T Consensus       125 ~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~i~~~  199 (555)
T TIGR03143       125 FTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNHPKIEVKFN  199 (555)
T ss_pred             hCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhCCCcEEEeC
Confidence            12233333222222233589999999999999999999999999999999886532  2222   233345579999999


Q ss_pred             ceEEEEEEcCCeEEEEEeecCCCceEEE--EcCE----EEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          276 TKVVGVDLSGDGVKLTLEPAAGGEKTIL--EADV----VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i--~~D~----vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      +.|+++..++....+.+.+..++...++  ++|.    |++++|++||+.+  ++ .++.++++|+|.||++++|++|+|
T Consensus       200 ~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l--~~-~~l~l~~~G~I~vd~~~~Ts~p~I  276 (555)
T TIGR03143       200 TELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSEL--FK-GVVELDKRGYIPTNEDMETNVPGV  276 (555)
T ss_pred             CEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhH--Hh-hhcccCCCCeEEeCCccccCCCCE
Confidence            9999997544322344433233333343  3676    9999999999985  33 357888889999999999999999


Q ss_pred             EEecccCC-CCCchhHHHHHHHHHHHHHc
Q 011787          350 YAIGDVIP-GPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       350 ya~GD~~~-~~~~~~~A~~~g~~aa~~i~  377 (477)
                      ||+|||+. .+..+..|+.||+.||.+|.
T Consensus       277 yAaGDv~~~~~~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       277 YAAGDLRPKELRQVVTAVADGAIAATSAE  305 (555)
T ss_pred             EEceeccCCCcchheeHHhhHHHHHHHHH
Confidence            99999985 34567889999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=1.5e-35  Score=300.68  Aligned_cols=292  Identities=29%  Similarity=0.391  Sum_probs=213.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...+||+||||||||++||..|++.|++|+|+++  .+||++.....++.                +  .+..    ...
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~----------------~--~~~~----~~~  265 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIEN----------------L--ISVP----YTT  265 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCccc----------------c--cccC----CCC
Confidence            4569999999999999999999999999999975  58998653211110                0  0000    011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                      +.+           +...+...+++++++++.+ .+..++  .+.+.+.+.+|  ..+.||++|+|||+.++.  +|+..
T Consensus       266 ~~~-----------l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~ipG~~  332 (515)
T TIGR03140       266 GSQ-----------LAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLGVPGEK  332 (515)
T ss_pred             HHH-----------HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCCCCCHH
Confidence            211           2223344556678888775 455443  34567777666  579999999999998753  34432


Q ss_pred             -cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcEEE
Q 011787          196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFM  273 (477)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~  273 (477)
                       .....+............+++++|||+|++|+|+|..|+..+.+|+++++.+.+..      ...+.+.+++ .||+++
T Consensus       333 ~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~  406 (515)
T TIGR03140       333 EYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDIL  406 (515)
T ss_pred             HcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEE
Confidence             11223333222222223578999999999999999999999999999998876532      2345666765 599999


Q ss_pred             eCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          274 LKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       274 ~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++.++++..+++++. +++.+..+++.+++++|.|++++|++||+++  ++.. +.++++|+|.||+++||++|+|||+
T Consensus       407 ~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~--l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAa  483 (515)
T TIGR03140       407 TSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEW--LKDA-VELNRRGEIVIDERGRTSVPGIFAA  483 (515)
T ss_pred             ECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchH--Hhhh-cccCCCCeEEECCCCCCCCCCEEEc
Confidence            9999999987655554 6665444455578999999999999999986  4454 7778889999999999999999999


Q ss_pred             cccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787          353 GDVIPGP-MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       353 GD~~~~~-~~~~~A~~~g~~aa~~i~~  378 (477)
                      |||+..+ .++..|+.+|..||.+|..
T Consensus       484 GDv~~~~~~~~~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       484 GDVTTVPYKQIIIAMGEGAKAALSAFD  510 (515)
T ss_pred             ccccCCccceEEEEEccHHHHHHHHHH
Confidence            9999865 4678899999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=1.9e-35  Score=294.88  Aligned_cols=282  Identities=26%  Similarity=0.294  Sum_probs=206.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ....++|+||||||||++||..|++.|++|+|+|+.+.+||++.+ + +|...                          .
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-g-ip~~~--------------------------~  181 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY-G-IPEFR--------------------------L  181 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee-c-CCCcc--------------------------C
Confidence            345689999999999999999999999999999998889987532 1 22100                          0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCC-CCCC--CCCCcc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKS--LPGITI  196 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~-~~~~--~~g~~~  196 (477)
                      + .+           +.......+.+.+++++.+....     ..+.+.+.   ...||+||||||+ .|+.  +|+.+ 
T Consensus       182 ~-~~-----------~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~~~---~~~yd~viiAtGa~~p~~~~ipG~~-  240 (449)
T TIGR01316       182 P-KE-----------IVVTEIKTLKKLGVTFRMNFLVG-----KTATLEEL---FSQYDAVFIGTGAGLPKLMNIPGEE-  240 (449)
T ss_pred             C-HH-----------HHHHHHHHHHhCCcEEEeCCccC-----CcCCHHHH---HhhCCEEEEeCCCCCCCcCCCCCCC-
Confidence            0 00           01111233556789888775321     12333222   2469999999998 5643  44433 


Q ss_pred             CCceEecchhhhcc---------------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHH
Q 011787          197 DEKRIVSSTGALAL---------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQ  260 (477)
Q Consensus       197 ~~~~~~~~~~~~~~---------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~  260 (477)
                       ...+++..++...               ...+++++|||+|.+|+|+|..+.+.|.+||++++.++. ++..     ..
T Consensus       241 -~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-----~~  314 (449)
T TIGR01316       241 -LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-----VE  314 (449)
T ss_pred             -CCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----HH
Confidence             3446665554321               124689999999999999999999999999999988653 2221     22


Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcC-CeE-EEEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCCc
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSG-DGV-KLTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLGL  323 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~-~~~-~v~~~~~------~---------~~~~~~i~~D~vi~a~G~~p~~~~l~~  323 (477)
                      ..+.+++.||++++++.++++..++ +++ .+++...      .         .++...+++|.||+++|..|+..+  +
T Consensus       315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l  392 (449)
T TIGR01316       315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--A  392 (449)
T ss_pred             HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--h
Confidence            3356788899999999999997643 434 2444310      0         123457999999999999999865  6


Q ss_pred             cccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       324 ~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +..+++++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus       393 ~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             hccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            7778988888999999999999999999999999898999999999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=6.6e-35  Score=280.20  Aligned_cols=295  Identities=20%  Similarity=0.248  Sum_probs=208.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..+||+||||||||++||..|+++|++++++|+ ...||.+.......                     .++......+.
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~~~~~---------------------~~~~~~~~~~~   62 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVE---------------------NWPGDPNDLTG   62 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecCceEC---------------------CCCCCCCCCCH
Confidence            468999999999999999999999999999996 46788765432110                     00000011222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCc-c
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGIT-I  196 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~-~  196 (477)
                      +.+.           ..+.......++++..+.+..++  .+.+.+....   ..+.||+||||||+.|+.+  |+.. .
T Consensus        63 ~~~~-----------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~---~~~~~d~vilAtG~~~~~~~i~g~~~~  128 (321)
T PRK10262         63 PLLM-----------ERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDS---GEYTCDALIIATGASARYLGLPSEEAF  128 (321)
T ss_pred             HHHH-----------HHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecC---CEEEECEEEECCCCCCCCCCCCCHHHc
Confidence            2222           12223334445566665544443  3444554433   3689999999999998543  4432 1


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      ....+............+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.  .++.+.+.+++.|++.||++++++
T Consensus       129 ~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~  206 (321)
T PRK10262        129 KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNR  206 (321)
T ss_pred             CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCC
Confidence            223333333333334468999999999999999999999999999999987652  356677888899999999999999


Q ss_pred             eEEEEEEcCCeE-EEEEeecC-CCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCC-----CCCCCCCCe
Q 011787          277 KVVGVDLSGDGV-KLTLEPAA-GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE-----RFATNIPGV  349 (477)
Q Consensus       277 ~v~~i~~~~~~~-~v~~~~~~-~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-----~l~t~~~~v  349 (477)
                      .++++..++.++ .+++.+.. .++.+++++|.|++++|++||...+  + .++.++ +|+|.||+     +++|++|+|
T Consensus       207 ~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~t~~~~V  282 (321)
T PRK10262        207 TLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGV  282 (321)
T ss_pred             EEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccccCCCCE
Confidence            999997765433 35554322 2234689999999999999999853  2 245553 58899997     678999999


Q ss_pred             EEecccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          350 YAIGDVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       350 ya~GD~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||+|||++. +.....|+.+|..||..|..
T Consensus       283 yA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~  312 (321)
T PRK10262        283 FAAGDVMDHIYRQAITSAGTGCMAALDAER  312 (321)
T ss_pred             EECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence            999999964 45677799999999998864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=1.2e-34  Score=294.53  Aligned_cols=292  Identities=31%  Similarity=0.436  Sum_probs=215.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...|||+||||||||++||.+|++.|++|+|+++  .+||+|.....++.                +  .++.    ...
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~----------------~--~~~~----~~~  264 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIEN----------------F--ISVP----ETE  264 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccc----------------c--CCCC----CCC
Confidence            3468999999999999999999999999999986  48998753211110                0  0000    112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                      +.+           +...+...++++++++..+ .+..++.  +.+.+.+.+|  .++.||+||+|||++++.  +|+..
T Consensus       265 ~~~-----------l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~  331 (517)
T PRK15317        265 GPK-----------LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGED  331 (517)
T ss_pred             HHH-----------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHH
Confidence            222           2333445566778888765 4655544  3667777666  579999999999998853  34432


Q ss_pred             -cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcEEE
Q 011787          196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFM  273 (477)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~  273 (477)
                       .....++...........+++++|||+|.+|+|+|..|+..+.+|+++++.+.+..  +    ..+.+.+.+ .||+++
T Consensus       332 ~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~  405 (517)
T PRK15317        332 EYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTII  405 (517)
T ss_pred             HhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEE
Confidence             22233333322222233578999999999999999999999999999999876532  2    334555554 599999


Q ss_pred             eCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          274 LKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       274 ~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++.+.++..+++.+. +++.+..+++..++++|.+++++|++||+++  ++.. +.++++|+|.||+++||++|+||||
T Consensus       406 ~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~--l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAa  482 (517)
T PRK15317        406 TNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW--LKGT-VELNRRGEIIVDARGATSVPGVFAA  482 (517)
T ss_pred             ECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchH--Hhhh-eeeCCCCcEEECcCCCCCCCCEEEC
Confidence            9999999987755544 5665444455568999999999999999986  4444 7788889999999999999999999


Q ss_pred             cccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787          353 GDVIPGP-MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       353 GD~~~~~-~~~~~A~~~g~~aa~~i~~  378 (477)
                      |||+..+ .....|+.+|..||.++..
T Consensus       483 GDv~~~~~k~~~~A~~eG~~Aa~~~~~  509 (517)
T PRK15317        483 GDCTTVPYKQIIIAMGEGAKAALSAFD  509 (517)
T ss_pred             ccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence            9999765 5788999999999988864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-34  Score=270.11  Aligned_cols=289  Identities=28%  Similarity=0.366  Sum_probs=214.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCe-EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ..+||+|||||||||+||.++++.+++ ++|+|+ ...||+.....-+..                +  .|++.   ...
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~ven----------------y--pg~~~---~~~   59 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTDVEN----------------Y--PGFPG---GIL   59 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccceeecC----------------C--CCCcc---CCc
Confidence            468999999999999999999999999 555555 667765332211110                0  01110   111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc-
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT-  195 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~-  195 (477)
                      ...           +.+...+...+.++++....+..++..  .+.|.+.++  . +.+++||||||..++.  +|+.. 
T Consensus        60 g~~-----------L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~--~-~~ak~vIiAtG~~~~~~~~~~e~e  125 (305)
T COG0492          60 GPE-----------LMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG--T-YEAKAVIIATGAGARKLGVPGEEE  125 (305)
T ss_pred             hHH-----------HHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC--e-EEEeEEEECcCCcccCCCCCcchh
Confidence            222           233334455567888888777776654  678888887  3 9999999999998753  34322 


Q ss_pred             cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc-CcEEEe
Q 011787          196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFML  274 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~  274 (477)
                      ..+..+..+..+.. ...+++++|||||.+++|.|..|++.+.+||+++|++.+.+      .+.+.+.+++. +|++++
T Consensus       126 ~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~~  198 (305)
T COG0492         126 FEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLKKNVKIEVLT  198 (305)
T ss_pred             hcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHHhcCCeEEEe
Confidence            33445555544444 45578999999999999999999999999999999998754      23445555555 899999


Q ss_pred             CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787          275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD  354 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD  354 (477)
                      ++.+.++..++ ...+.+.+.. +....+.+|.+++++|..|++.+  ++..++ ++++|+|.+|+.++||+|+||||||
T Consensus       199 ~~~i~ei~G~~-v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGD  273 (305)
T COG0492         199 NTVVKEILGDD-VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAAGD  273 (305)
T ss_pred             CCceeEEecCc-cceEEEEecC-CceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccCCCCEEEeEe
Confidence            99999998776 3345555433 45678999999999999999986  555555 7889999999999999999999999


Q ss_pred             cCCCCC-chhHHHHHHHHHHHHHcC
Q 011787          355 VIPGPM-LAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       355 ~~~~~~-~~~~A~~~g~~aa~~i~~  378 (477)
                      ++..+. +...|..+|..||.++..
T Consensus       274 v~~~~~rqi~ta~~~G~~Aa~~a~~  298 (305)
T COG0492         274 VADKNGRQIATAAGDGAIAALSAER  298 (305)
T ss_pred             eccCcccEEeehhhhHHHHHHHHHH
Confidence            997654 788899999999887754

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=7.8e-35  Score=290.84  Aligned_cols=287  Identities=24%  Similarity=0.245  Sum_probs=205.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ....+||+||||||||++||..|++.|++|+|+|+.+.+||++.+  .+|...+                          
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~~l--------------------------  188 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY--GIPEFRL--------------------------  188 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee--cCCCccC--------------------------
Confidence            345689999999999999999999999999999998889998642  1221100                          


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCC-CCCCCCCCccCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKSLPGITIDE  198 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~-~~~~~~g~~~~~  198 (477)
                      +-..           +.....+.+++.++++..++...   .  .+...+. ...+.||+||||||+ .|+.++..+.+.
T Consensus       189 ~~~~-----------~~~~~~~~~~~~gv~i~~~~~v~---~--~v~~~~~-~~~~~~d~viiAtGa~~~~~l~ipG~~~  251 (464)
T PRK12831        189 PKET-----------VVKKEIENIKKLGVKIETNVVVG---K--TVTIDEL-LEEEGFDAVFIGSGAGLPKFMGIPGENL  251 (464)
T ss_pred             CccH-----------HHHHHHHHHHHcCCEEEcCCEEC---C--cCCHHHH-HhccCCCEEEEeCCCCCCCCCCCCCcCC
Confidence            0000           11111234556788887775331   1  1222221 124569999999998 465433222334


Q ss_pred             ceEecchhhhcc--------------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHHHHH
Q 011787          199 KRIVSSTGALAL--------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQFQR  263 (477)
Q Consensus       199 ~~~~~~~~~~~~--------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~~~~  263 (477)
                      ..+++..+++..              ...+++|+|||+|++|+|+|..+.+.|.+|+++++.+.. ++....+    + +
T Consensus       252 ~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e----~-~  326 (464)
T PRK12831        252 NGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE----V-H  326 (464)
T ss_pred             cCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH----H-H
Confidence            457776665432              135799999999999999999999999999999987642 3322222    2 2


Q ss_pred             HHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec-----C----------CCceEEEEcCEEEEeecCCCCCCCCCccc-
Q 011787          264 SLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA-----A----------GGEKTILEADVVLVSAGRTPFTAGLGLDK-  325 (477)
Q Consensus       264 ~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~-----~----------~~~~~~i~~D~vi~a~G~~p~~~~l~~~~-  325 (477)
                      .+++.||++++++.+.++..++ +.+. +.+...     .          +++..++++|.||+++|..|+..+  ++. 
T Consensus       327 ~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~--~~~~  404 (464)
T PRK12831        327 HAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI--SSTT  404 (464)
T ss_pred             HHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--hccc
Confidence            3567899999999999997643 3332 333210     0          233457999999999999999875  344 


Q ss_pred             cceeecCCCCeecCCC-CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          326 IGVETDKMGRIPVNER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       326 ~gl~~~~~g~i~vd~~-l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      .|+.++++|+|.||++ ++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus       405 ~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        405 KGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             CCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            6888888899999998 9999999999999999888999999999999999864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=9.5e-35  Score=284.36  Aligned_cols=281  Identities=21%  Similarity=0.272  Sum_probs=207.4

Q ss_pred             cEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           45 DVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +|||||||+||+.+|.+|+++   +.+|+|||+++..    .+..+.|.                +.....       +.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~~~~~~~----------------~~~g~~-------~~   53 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSGMLPG----------------MIAGHY-------SL   53 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cccchhhH----------------HHheeC-------CH
Confidence            589999999999999999744   6899999986432    00001110                000000       00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEK  199 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~~~  199 (477)
                                 +.+...+.+++++.+++++.+.+..+|.....|.+.+|  ++++||+||||||+.+.  .+|+......
T Consensus        54 -----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~  120 (364)
T TIGR03169        54 -----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAV  120 (364)
T ss_pred             -----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCccccccc
Confidence                       01111233455667999999999999988888888887  67999999999999985  3455321111


Q ss_pred             eEecchhhhc--------c--cCCCCeeEEEcccHHHHHHHHHHHH----cC--CcEEEEEeCCCcCCCCCHHHHHHHHH
Q 011787          200 RIVSSTGALA--------L--NEVPKKLVVIGAGYIGLEMGSVWAR----LG--SEVTVVEFAADIVPSMDGEIRKQFQR  263 (477)
Q Consensus       200 ~~~~~~~~~~--------~--~~~~~~v~IiG~G~~g~e~a~~l~~----~g--~~Vtli~~~~~~~~~~~~~~~~~~~~  263 (477)
                      .+.+.+++..        .  ...+++++|+|+|++|+|+|..|++    .|  .+|+++ ..+.+++.+++++...+++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~  199 (364)
T TIGR03169       121 PVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR  199 (364)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH
Confidence            1222222211        1  1235799999999999999999875    34  489999 6677788888999999999


Q ss_pred             HHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCC
Q 011787          264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA  343 (477)
Q Consensus       264 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~  343 (477)
                      .|++.||++++++.+++++.  +  .+.+.     ++.++++|.+++|+|.+|+..   +...++.++++|++.||+++|
T Consensus       200 ~l~~~gV~v~~~~~v~~i~~--~--~v~~~-----~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~~l~  267 (364)
T TIGR03169       200 LLARRGIEVHEGAPVTRGPD--G--ALILA-----DGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTLQ  267 (364)
T ss_pred             HHHHCCCEEEeCCeeEEEcC--C--eEEeC-----CCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECCccc
Confidence            99999999999999999853  3  34433     457899999999999999864   455678888889999999999


Q ss_pred             C-CCCCeEEecccCCC-----CCchhHHHHHHHHHHHHHcC
Q 011787          344 T-NIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       344 t-~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~  378 (477)
                      | ++|+|||+|||+..     +..+..|++||+++|+||..
T Consensus       268 ~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       268 SLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             cCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence            7 99999999999953     34677899999999999963

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=6.3e-34  Score=297.53  Aligned_cols=283  Identities=24%  Similarity=0.309  Sum_probs=205.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+.++|+||||||||++||..|++.|++|+|+|+.+.+||++.+  .+|...+.                          
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~--~IP~~Rlp--------------------------  588 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN--IIPQFRIP--------------------------  588 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee--eccccccc--------------------------
Confidence            35679999999999999999999999999999999899997643  23322110                          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~  200 (477)
                      . +           ......+++.+.++++..+....       +...+.  ....||+||||||++++.+++++.....
T Consensus       589 ~-e-----------vL~~die~l~~~GVe~~~gt~Vd-------i~le~L--~~~gYDaVILATGA~~~~~l~IpG~~~g  647 (1019)
T PRK09853        589 A-E-----------LIQHDIEFVKAHGVKFEFGCSPD-------LTVEQL--KNEGYDYVVVAIGADKNGGLKLEGGNQN  647 (1019)
T ss_pred             H-H-----------HHHHHHHHHHHcCCEEEeCceeE-------EEhhhh--eeccCCEEEECcCCCCCCCCCCCCccCC
Confidence            0 0           01111234556789988775431       222222  4556999999999986433333222234


Q ss_pred             Eecchhhhcc-------cCCCCeeEEEcccHHHHHHHHHHHHc-C-CcEEEEEeCCC-cCCCCCHHHHHHHHHHHHhcCc
Q 011787          201 IVSSTGALAL-------NEVPKKLVVIGAGYIGLEMGSVWARL-G-SEVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       201 ~~~~~~~~~~-------~~~~~~v~IiG~G~~g~e~a~~l~~~-g-~~Vtli~~~~~-~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                      +++..+++..       ...+++|+|||||.+|+|+|..+.+. | .+|+++.|++. .+|..++++    .+.+ +.||
T Consensus       648 V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e~Al-eeGV  722 (1019)
T PRK09853        648 VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY----EEAL-EDGV  722 (1019)
T ss_pred             ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHH----HHHH-HcCC
Confidence            5554443321       23589999999999999999998887 4 48999998763 455544433    3333 4699


Q ss_pred             EEEeCceEEEEEEcCCeEEEEE---e---------ecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeec
Q 011787          271 KFMLKTKVVGVDLSGDGVKLTL---E---------PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV  338 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~~---~---------~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~v  338 (477)
                      ++++.+.+.++.. ++++.+..   .         ...++++.++++|.||+|+|..|+..+  ++..|+.++++|++.|
T Consensus       723 e~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~G~I~V  799 (1019)
T PRK09853        723 EFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVV  799 (1019)
T ss_pred             EEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCCCCEEe
Confidence            9999999998864 33333211   0         011345678999999999999999986  5677888888899999


Q ss_pred             CCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       339 d~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      |+.++|+.|+|||+|||+.+|.++..|+.+|+.||++|++..
T Consensus       800 DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~  841 (1019)
T PRK09853        800 DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE  841 (1019)
T ss_pred             CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999889999999999999999998643

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=7.3e-34  Score=279.03  Aligned_cols=349  Identities=23%  Similarity=0.281  Sum_probs=255.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchh-hhhhhHHHHHHHhhhhhCCccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKA-LLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      +.+++|||.|+||..+..++.+.   -++|+++-.++.+.          ..+ +++..         ++.        .
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----------Y~Ri~Ls~v---------l~~--------~   55 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----------YNRILLSSV---------LAG--------E   55 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc----------ccceeeccc---------cCC--------C
Confidence            46899999999999999999884   46899997654321          100 00000         000        0


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~  197 (477)
                      .+           .+.+.-.-.+|+++++++++.+ .+.++|...+.|.++.|  .++.||+||+||||.|..+|....+
T Consensus        56 ~~-----------~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~PiPG~~  122 (793)
T COG1251          56 KT-----------AEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSD  122 (793)
T ss_pred             cc-----------HHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCCCCCC
Confidence            00           1112222346888999999988 68899999999999998  8999999999999999766644444


Q ss_pred             CceEecchhhhcc------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCc
Q 011787          198 EKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       198 ~~~~~~~~~~~~~------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv  270 (477)
                      ...++..++..++      .+..++.+|||||..|+|+|..|...|.++++++-.+.++- .+|+.....+++.+++.|+
T Consensus       123 ~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi  202 (793)
T COG1251         123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGI  202 (793)
T ss_pred             CCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcc
Confidence            4444444333322      23356689999999999999999999999999999988864 7899999999999999999


Q ss_pred             EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787          271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy  350 (477)
                      +++++....++...+....+.+.     ++..+++|.|++++|.+||...  ...+|+.+++  +|.||++|||+.|+||
T Consensus       203 ~~~l~~~t~ei~g~~~~~~vr~~-----DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpdIY  273 (793)
T COG1251         203 KVLLEKNTEEIVGEDKVEGVRFA-----DGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPDIY  273 (793)
T ss_pred             eeecccchhhhhcCcceeeEeec-----CCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCCee
Confidence            99999999888775555567766     7889999999999999999997  7888999987  7999999999999999


Q ss_pred             EecccCC----CCCchhHHHHHHHHHHHHHcCCCCC-CCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecC--
Q 011787          351 AIGDVIP----GPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFL--  423 (477)
Q Consensus       351 a~GD~~~----~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--  423 (477)
                      |+|+|+.    .+.+...+..|++++|.|+++.... +.... ++               ..++..|+++-+.. ++.  
T Consensus       274 AvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv-~s---------------tkLKv~Gvdl~S~G-D~~e~  336 (793)
T COG1251         274 AVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSV-TS---------------TKLKVSGVDVFSAG-DFQET  336 (793)
T ss_pred             ehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccccc-ch---------------hhhcccccceeecc-chhhc
Confidence            9999993    4568888999999999999987542 21111 11               12223333332221 111  


Q ss_pred             ccccch-hcCCC-ceEEEEEEECCCCeEEEEEEEcCCh
Q 011787          424 ANSRAK-AIDDA-EGIVKILAEKETDKILGVHIMAPNA  459 (477)
Q Consensus       424 ~~~~~~-~~~~~-~~~~k~~~~~~~~~i~G~~~~g~~~  459 (477)
                      ...... +.++. ..|-|+++  ++++|+|+.++|+.+
T Consensus       337 ~~~~~iv~~D~~~~iYKrlvL--~dd~IvgavL~GDt~  372 (793)
T COG1251         337 EGAESIVFRDEQRGIYKKLVL--KDDKIVGAVLYGDTS  372 (793)
T ss_pred             CCCceEEEecccccceeEEEE--eCCeEEEEEEEeecc
Confidence            111111 22333 34666776  367999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=2.1e-33  Score=281.84  Aligned_cols=282  Identities=26%  Similarity=0.316  Sum_probs=204.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...++|+||||||||+++|..|++.|++|+|+|+.+.+||...+ + +|...+                          +
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-g-ip~~~~--------------------------~  189 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-G-IPEFRL--------------------------P  189 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-c-CCCccC--------------------------C
Confidence            44689999999999999999999999999999998888886432 1 121100                          0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~g~~~~  197 (477)
                       .           .+.......+++.++++..++...   .  .+...+.   .+.||+||+|||+. ++  .+|+.+  
T Consensus       190 -~-----------~~~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~~~i~G~~--  247 (457)
T PRK11749        190 -K-----------DIVDREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRFLGIPGEN--  247 (457)
T ss_pred             -H-----------HHHHHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCCCCCCCcc--
Confidence             0           011122344556788888776431   1  1222222   37899999999996 43  234432  


Q ss_pred             CceEecchhhhccc---------CCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHHHHHHHHH
Q 011787          198 EKRIVSSTGALALN---------EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRKQFQRSLE  266 (477)
Q Consensus       198 ~~~~~~~~~~~~~~---------~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~~~~~~l~  266 (477)
                      ...+++..++....         ..+++++|||+|.+|+|+|..+.+.|. +|+++++.+.. ++..+.     ..+.++
T Consensus       248 ~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~  322 (457)
T PRK11749        248 LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAK  322 (457)
T ss_pred             CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHH
Confidence            33455544433211         257999999999999999999999998 89999987643 443222     345678


Q ss_pred             hcCcEEEeCceEEEEEEcCCeE-EEEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCccccceeec
Q 011787          267 KQKMKFMLKTKVVGVDLSGDGV-KLTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD  331 (477)
Q Consensus       267 ~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~  331 (477)
                      +.||++++++.+.++..+++++ .+++...              .++++.++++|.||+++|.+|+..++ .+..++.++
T Consensus       323 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~  401 (457)
T PRK11749        323 EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLELN  401 (457)
T ss_pred             HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccCC
Confidence            8999999999999998765442 1333211              12355689999999999999997643 345678888


Q ss_pred             CCCCeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          332 KMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       332 ~~g~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ++|+|.||+ +++|++|+|||+|||+..+.++..|+.||+.||.+|..
T Consensus       402 ~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~  449 (457)
T PRK11749        402 RWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE  449 (457)
T ss_pred             CCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence            889999998 78999999999999998888899999999999999864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=4.2e-33  Score=293.01  Aligned_cols=280  Identities=27%  Similarity=0.343  Sum_probs=202.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..++|+||||||||++||..|++.|++|+|+|+++.+||++.+.  +|...+.                          .
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~--IP~~rlp--------------------------~  587 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IPEFRIS--------------------------A  587 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec--ccccCCC--------------------------H
Confidence            45899999999999999999999999999999999999986432  3322110                          0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                       +           ......+.+.+.+|++..+...     ...+  .+.  ....||+||||||++++.++.++.....+
T Consensus       588 -e-----------~l~~~ie~l~~~GVe~~~g~~~-----d~~v--e~l--~~~gYDaVIIATGA~~~~~l~I~G~~~~v  646 (1012)
T TIGR03315       588 -E-----------SIQKDIELVKFHGVEFKYGCSP-----DLTV--AEL--KNQGYKYVILAIGAWKHGPLRLEGGGERV  646 (1012)
T ss_pred             -H-----------HHHHHHHHHHhcCcEEEEeccc-----ceEh--hhh--hcccccEEEECCCCCCCCCCCcCCCCcce
Confidence             0           0011123445568888776321     1122  121  34569999999999864333333222345


Q ss_pred             ecchhhhc-------ccCCCCeeEEEcccHHHHHHHHHHHHc-CC-cEEEEEeCCC-cCCCCCHHHHHHHHHHHHhcCcE
Q 011787          202 VSSTGALA-------LNEVPKKLVVIGAGYIGLEMGSVWARL-GS-EVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       202 ~~~~~~~~-------~~~~~~~v~IiG~G~~g~e~a~~l~~~-g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      ++..++..       ....+++|+|||||.+|+|+|..+.+. |. +|+++++++. .++..++++    .+.+ +.||+
T Consensus       647 ~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~~al-eeGVe  721 (1012)
T TIGR03315       647 LKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----EEAL-EDGVD  721 (1012)
T ss_pred             eeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH----HHHH-HcCCE
Confidence            55444332       124589999999999999999998876 75 7999998763 455554443    3333 46999


Q ss_pred             EEeCceEEEEEEcCCeEEEEEe------------ecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecC
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLE------------PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN  339 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~------------~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd  339 (477)
                      +++...+.++.  ++++.+...            ...+++..++++|.||+|+|..|+..+  ++..|+.++++|++.||
T Consensus       722 ~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~G~I~VD  797 (1012)
T TIGR03315       722 FKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVN  797 (1012)
T ss_pred             EEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCCCCEEeC
Confidence            99999888886  344433211            011345568999999999999999986  56788988888999999


Q ss_pred             CC-CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787          340 ER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       340 ~~-l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      ++ ++|+.|+|||+|||+.+|..+..|+.||+.||.+|++.
T Consensus       798 ~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~  838 (1012)
T TIGR03315       798 QATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR  838 (1012)
T ss_pred             CCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence            86 89999999999999988999999999999999999854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=1e-32  Score=267.81  Aligned_cols=289  Identities=26%  Similarity=0.335  Sum_probs=200.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ...+|+|||+|++|+++|..|++.|++|+++|+.+.+||.....  .+..                          ..+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~--------------------------~~~~   68 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEF--------------------------RIPI   68 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--Cccc--------------------------ccCH
Confidence            45799999999999999999999999999999988888864321  0100                          0000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec-C------CEEEEEecCCceEEEEecEEEEccCCC-CC--CC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-P------SEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SL  191 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~------~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~  191 (477)
                      ..           +..... .+.+.+++++.++....+ .      ..+.......+...+.||+||||||+. +.  .+
T Consensus        69 ~~-----------~~~~~~-~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~i  136 (352)
T PRK12770         69 ER-----------VREGVK-ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGI  136 (352)
T ss_pred             HH-----------HHHHHH-HHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCC
Confidence            00           011111 233447887776543221 1      111111111111247899999999994 43  33


Q ss_pred             CCCccCCceEecchhhhc-----------ccC----CCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCcCCCCCH
Q 011787          192 PGITIDEKRIVSSTGALA-----------LNE----VPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVPSMDG  255 (477)
Q Consensus       192 ~g~~~~~~~~~~~~~~~~-----------~~~----~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~~~~~  255 (477)
                      |+.  +...+++..+...           ...    .+++++|||+|++|+|+|..|.+.|.+ |+++.+.+.....   
T Consensus       137 pg~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~---  211 (352)
T PRK12770        137 PGE--DLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP---  211 (352)
T ss_pred             CCc--cccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC---
Confidence            443  3334555432211           111    258999999999999999999999987 9999987643211   


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec---------------CCCceEEEEcCEEEEeecCCCCCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                       ......+.|+++||++++++.+.+++.++....+++.+.               .++++.++++|.+++++|++|+..+
T Consensus       212 -~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l  290 (352)
T PRK12770        212 -AGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF  290 (352)
T ss_pred             -CCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh
Confidence             113345568899999999999999976543333443221               1345678999999999999999864


Q ss_pred             CCccc-cceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          321 LGLDK-IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       321 l~~~~-~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                        ..+ .|+.++++|++.||++++|+.|+|||+|||+..|.....|+.||+.||.+|..
T Consensus       291 --~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        291 --AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             --hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence              333 78888888999999999999999999999998888999999999999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=2.7e-32  Score=290.22  Aligned_cols=282  Identities=24%  Similarity=0.298  Sum_probs=204.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..++|+|||||||||+||..|++.|++|+|+|+.+.+||...+ + +|...+..                          
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y-G-IP~~rlp~--------------------------  356 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY-G-IPEFRLPN--------------------------  356 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc-c-CCCCcChH--------------------------
Confidence            4689999999999999999999999999999999999997432 2 44321100                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCC--CCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKS--LPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~--~~g~~~~~  198 (477)
                       +           +.+...+.++..|+++..+....     ..+..++.  ....||+|+||||+. |+.  +||  .+.
T Consensus       357 -~-----------vi~~~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l~IpG--~dl  415 (944)
T PRK12779        357 -Q-----------LIDDVVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFMNVPG--EHL  415 (944)
T ss_pred             -H-----------HHHHHHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcCCCCC--CcC
Confidence             0           11111234556789888775432     22444433  445799999999995 543  444  334


Q ss_pred             ceEecchhhhcc----------------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-cCCCCCHHHHHHH
Q 011787          199 KRIVSSTGALAL----------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IVPSMDGEIRKQF  261 (477)
Q Consensus       199 ~~~~~~~~~~~~----------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~~~~~~~~~~~~  261 (477)
                      ..+++..+++..                ...+++|+|||||.+|+++|..+.+.|.+|+++++++. .+|...    ..+
T Consensus       416 ~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~----~e~  491 (944)
T PRK12779        416 LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV----EEL  491 (944)
T ss_pred             cCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH----HHH
Confidence            567776665421                11468999999999999999999999999999998764 244322    223


Q ss_pred             HHHHHhcCcEEEeCceEEEEEEcCC--eEE-EEEe--------------ecCCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787          262 QRSLEKQKMKFMLKTKVVGVDLSGD--GVK-LTLE--------------PAAGGEKTILEADVVLVSAGRTPFTAGLGLD  324 (477)
Q Consensus       262 ~~~l~~~gv~~~~~~~v~~i~~~~~--~~~-v~~~--------------~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~  324 (477)
                      .+. .+.||+++++..++++..+++  .+. +.+.              ...+++..++++|.||+|+|..|+... ...
T Consensus       492 ~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~  569 (944)
T PRK12779        492 HHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDA  569 (944)
T ss_pred             HHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhc
Confidence            333 467999999999999976532  232 2221              001234467999999999999999753 234


Q ss_pred             ccceeecCCCCeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          325 KIGVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       325 ~~gl~~~~~g~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ..+++.+++|.|.||+ .++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus       570 ~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        570 EPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             ccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHH
Confidence            4578888889999997 48899999999999999888999999999999999964

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=1.5e-32  Score=290.66  Aligned_cols=283  Identities=26%  Similarity=0.331  Sum_probs=204.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...+||+||||||||++||..|++.|++|+|+|+.+.+||...+  .+|...+                          +
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~rl--------------------------p  480 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPEFRL--------------------------P  480 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCCCC--------------------------C
Confidence            35689999999999999999999999999999998889997432  1232110                          0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCC--CCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKS--LPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~--~~g~~~~  197 (477)
                      - +           +.....+.+.+.++++..+....   .  .+...+.  ....||+||||||+. |+.  +||.  +
T Consensus       481 ~-~-----------~~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~l--~~~~ydavvlAtGa~~~~~l~ipG~--~  539 (752)
T PRK12778        481 K-K-----------IVDVEIENLKKLGVKFETDVIVG---K--TITIEEL--EEEGFKGIFIASGAGLPNFMNIPGE--N  539 (752)
T ss_pred             H-H-----------HHHHHHHHHHHCCCEEECCCEEC---C--cCCHHHH--hhcCCCEEEEeCCCCCCCCCCCCCC--C
Confidence            0 0           00111234556788887765321   1  2222222  346799999999984 543  4443  3


Q ss_pred             CceEecchhhhcc--------------cCCCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc-CCCCCHHHHHHH
Q 011787          198 EKRIVSSTGALAL--------------NEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-VPSMDGEIRKQF  261 (477)
Q Consensus       198 ~~~~~~~~~~~~~--------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~-~~~~~~~~~~~~  261 (477)
                      ...+++..+++..              ...+++|+|||||.+|+|+|..+.+.|.+ |+++++++.. ++....++    
T Consensus       540 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~----  615 (752)
T PRK12778        540 SNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV----  615 (752)
T ss_pred             CCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----
Confidence            4456666655421              12468999999999999999999999997 9999987642 44322221    


Q ss_pred             HHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787          262 QRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLGLD  324 (477)
Q Consensus       262 ~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~  324 (477)
                       +.+++.||++++++.+.++..++ +.+. +++...               .+++..++++|.||+|+|..|+..++ ..
T Consensus       616 -~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~-~~  693 (752)
T PRK12778        616 -KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVP-SS  693 (752)
T ss_pred             -HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccc-cc
Confidence             34677899999999999987654 3332 333210               02334579999999999999998642 22


Q ss_pred             ccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       325 ~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ..++.++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus       694 ~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        694 IPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             ccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence            347888888999999999999999999999998888999999999999999964

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=3.9e-32  Score=272.99  Aligned_cols=287  Identities=23%  Similarity=0.303  Sum_probs=201.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...++|+||||||||++||..|++.|++|+|+|+.+.+||.+..  .+|...+                          +
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~--------------------------~  192 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFKL--------------------------E  192 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCcccC--------------------------C
Confidence            34579999999999999999999999999999999889986432  1221100                          0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~g~~~~  197 (477)
                      . .           ......+.+.+.++++..++....+     +... .  ....||+||+|||+. +.  .+||.+  
T Consensus       193 ~-~-----------~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~~-~--~~~~~d~vvlAtGa~~~~~l~ipG~~--  250 (471)
T PRK12810        193 K-E-----------VIDRRIELMEAEGIEFRTNVEVGKD-----ITAE-E--LLAEYDAVFLGTGAYKPRDLGIPGRD--  250 (471)
T ss_pred             H-H-----------HHHHHHHHHHhCCcEEEeCCEECCc-----CCHH-H--HHhhCCEEEEecCCCCCCcCCCCCcc--
Confidence            0 0           0111123455678888877644321     1111 1  235799999999998 43  345543  


Q ss_pred             CceEecchhhhc--------------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCCC-CH----HH
Q 011787          198 EKRIVSSTGALA--------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSM-DG----EI  257 (477)
Q Consensus       198 ~~~~~~~~~~~~--------------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~-~~----~~  257 (477)
                      ...+++..+++.              ....+++++|||+|++|+|+|..+.+.|. +|+++...+...... +.    ..
T Consensus       251 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~  330 (471)
T PRK12810        251 LDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYW  330 (471)
T ss_pred             CCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCccc
Confidence            344554332211              12357999999999999999999888886 788665444221111 00    00


Q ss_pred             -HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeec---------CCCceEEEEcCEEEEeecCCCCCCCCCcccc
Q 011787          258 -RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA---------AGGEKTILEADVVLVSAGRTPFTAGLGLDKI  326 (477)
Q Consensus       258 -~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~---------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~  326 (477)
                       .....+.+++.||++++++.++++..+++++. +++...         ..++..++++|.||+|+|.+|+...+ ++..
T Consensus       331 ~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~  409 (471)
T PRK12810        331 PMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQF  409 (471)
T ss_pred             chHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-cccc
Confidence             11134556788999999999999976555553 443211         12344689999999999999986533 6778


Q ss_pred             ceeecCCCCeecC-CCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          327 GVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       327 gl~~~~~g~i~vd-~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +++++++|.+.+| ++++|+.|+|||+|||+.++.++..|+.||+.||.+|..
T Consensus       410 gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        410 GVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDA  462 (471)
T ss_pred             CcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHH
Confidence            8888888999998 789999999999999998888899999999999999864

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=256.70  Aligned_cols=295  Identities=28%  Similarity=0.433  Sum_probs=223.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...++|||+|++|..|+.++++.+.  +++++-++..+          |..+    +    .    +.....        
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------pydr----~----~----Ls~~~~--------  123 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------PYDR----A----R----LSKFLL--------  123 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----------cccc----h----h----ccccee--------
Confidence            5689999999999999999999874  67777653211          1100    0    0    000000        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~  197 (477)
                               .....+.....++++..+++++.+ .++.+|-..+++.+.+|  +.+.|++|+||||+.+.  ++||..  
T Consensus       124 ---------~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~--  190 (478)
T KOG1336|consen  124 ---------TVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVE--  190 (478)
T ss_pred             ---------eccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCcc--
Confidence                     000112222345788889999887 57789999999999998  89999999999999775  445554  


Q ss_pred             CceEecchhhhcc------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCc
Q 011787          198 EKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       198 ~~~~~~~~~~~~~------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv  270 (477)
                      ...+.+..+..+.      ......|+++|+|++|+|+|..|...+.+||++++.+.+++ .+.+.+.+.+++.++++||
T Consensus       191 ~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgV  270 (478)
T KOG1336|consen  191 LKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGV  270 (478)
T ss_pred             ccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCe
Confidence            4555554443332      23477899999999999999999999999999999999888 7789999999999999999


Q ss_pred             EEEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          271 KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      ++++++.+.+++...+  .+.+.+.     ++.++++|+|++++|.+||+.+  ++. +...+..|+|.||+++||++||
T Consensus       271 k~~~~t~~s~l~~~~~Gev~~V~l~-----dg~~l~adlvv~GiG~~p~t~~--~~~-g~~~~~~G~i~V~~~f~t~~~~  342 (478)
T KOG1336|consen  271 KFYLGTVVSSLEGNSDGEVSEVKLK-----DGKTLEADLVVVGIGIKPNTSF--LEK-GILLDSKGGIKVDEFFQTSVPN  342 (478)
T ss_pred             EEEEecceeecccCCCCcEEEEEec-----cCCEeccCeEEEeecccccccc--ccc-cceecccCCEeehhceeeccCC
Confidence            9999999999987763  3345554     7789999999999999999997  454 7888999999999999999999


Q ss_pred             eEEecccCCCCC----------chhHHHHHHHHHHHHHcCCCCCCCCCCCc
Q 011787          349 VYAIGDVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVP  389 (477)
Q Consensus       349 vya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p  389 (477)
                      |||+||++..|.          .+..|..+|+.|...+....... +...|
T Consensus       343 VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~-~~~lP  392 (478)
T KOG1336|consen  343 VYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA-YDYLP  392 (478)
T ss_pred             cccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc-ccccc
Confidence            999999996542          35567778887666665433222 44455

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=1.1e-31  Score=278.45  Aligned_cols=279  Identities=23%  Similarity=0.319  Sum_probs=201.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..++|+||||||||++||..|++.|++|+|+|+.+.+||++.+ + +|...+                          + 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~-g-ip~~~~--------------------------~-  242 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY-G-IPRFRL--------------------------P-  242 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee-c-CCCCCC--------------------------C-
Confidence            4579999999999999999999999999999999999997532 1 221100                          0 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~  198 (477)
                      ..+           .....+.+.+.++++..++....+     +...+.   ...||+||||||+.+.   .+|+.+  .
T Consensus       243 ~~~-----------~~~~~~~l~~~Gv~i~~~~~v~~d-----v~~~~~---~~~~DaVilAtGa~~~~~~~ipG~~--~  301 (652)
T PRK12814        243 ESV-----------IDADIAPLRAMGAEFRFNTVFGRD-----ITLEEL---QKEFDAVLLAVGAQKASKMGIPGEE--L  301 (652)
T ss_pred             HHH-----------HHHHHHHHHHcCCEEEeCCcccCc-----cCHHHH---HhhcCEEEEEcCCCCCCCCCCCCcC--c
Confidence            000           011123345568887766532211     222221   2359999999999863   344432  3


Q ss_pred             ceEecchhhhc------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCC-cCCCCCHHHHHHHHHHHHhcCc
Q 011787          199 KRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       199 ~~~~~~~~~~~------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                      ..+++..++..      ....+++++|||+|.+|+|+|..+.+.|. +|+++++.+. .++..+.++    .+. .+.||
T Consensus       302 ~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV  376 (652)
T PRK12814        302 PGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEA-LAEGV  376 (652)
T ss_pred             CCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHH-HHcCC
Confidence            34555444432      12458999999999999999999999986 6999998775 355444333    333 35699


Q ss_pred             EEEeCceEEEEEEcCCeEEEE---Eeec------------CCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCC
Q 011787          271 KFMLKTKVVGVDLSGDGVKLT---LEPA------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR  335 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~---~~~~------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~  335 (477)
                      ++++++.+.++..+++++.++   +...            .+++...+++|.||+++|..|+..+  ++..|+.++.+|+
T Consensus       377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~~G~  454 (652)
T PRK12814        377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGT  454 (652)
T ss_pred             cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCccccCCCc
Confidence            999999999998766654432   2211            0233457999999999999999886  5677888888899


Q ss_pred             eecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          336 IPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       336 i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      +.||+ .++|+.|+|||+||++..+.++..|+.||+.||.+|.
T Consensus       455 I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~  497 (652)
T PRK12814        455 VKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID  497 (652)
T ss_pred             EeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence            99997 5889999999999999988899999999999999985

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.98  E-value=1.2e-30  Score=280.27  Aligned_cols=282  Identities=23%  Similarity=0.286  Sum_probs=199.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..++|+|||||||||+||..|++.|++|+|+|+.+.+||...+  .+|...+.                           
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~--gip~~rl~---------------------------  479 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY--GIPSFRLP---------------------------  479 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec--cCCccCCC---------------------------
Confidence            4579999999999999999999999999999998889886432  13321100                           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~g~~~~~  198 (477)
                      .+           +.....+.+.+.++++..+....   ..+++.  +- .....||+||||||+. |+  .+||.  +.
T Consensus       480 ~e-----------~~~~~~~~l~~~Gv~~~~~~~vg---~~~~~~--~l-~~~~~yDaViIATGa~~pr~l~IpG~--~l  540 (1006)
T PRK12775        480 RD-----------IIDREVQRLVDIGVKIETNKVIG---KTFTVP--QL-MNDKGFDAVFLGVGAGAPTFLGIPGE--FA  540 (1006)
T ss_pred             HH-----------HHHHHHHHHHHCCCEEEeCCccC---CccCHH--HH-hhccCCCEEEEecCCCCCCCCCCCCc--CC
Confidence            00           11112234556788888775321   112221  10 0124699999999995 54  34543  34


Q ss_pred             ceEecchhhhcc---------------cCCCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc-CCCCCHHHHHHH
Q 011787          199 KRIVSSTGALAL---------------NEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-VPSMDGEIRKQF  261 (477)
Q Consensus       199 ~~~~~~~~~~~~---------------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~-~~~~~~~~~~~~  261 (477)
                      ..+++..+++..               ...+++|+|||||.+|+++|..+.++|.+ |+++.++... ++....+     
T Consensus       541 ~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e-----  615 (1006)
T PRK12775        541 GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE-----  615 (1006)
T ss_pred             CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----
Confidence            456776654421               12579999999999999999999999984 7888876543 3322111     


Q ss_pred             HHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCccc
Q 011787          262 QRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGLDK  325 (477)
Q Consensus       262 ~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~  325 (477)
                      .+.+++.||++++++.+.++..+ ++.+. +++...              .+++..++++|.||+|+|..|+...+ ...
T Consensus       616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~  694 (1006)
T PRK12775        616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT-QST  694 (1006)
T ss_pred             HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-hcc
Confidence            23467789999999999999754 34433 333210              12233579999999999999998642 223


Q ss_pred             cceeecCCCCeecCC-----CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          326 IGVETDKMGRIPVNE-----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       326 ~gl~~~~~g~i~vd~-----~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      .++.++++|.|.+|+     .++|++|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus       695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA  751 (1006)
T ss_pred             CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence            467888889999996     6899999999999999999999999999999999986

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.98  E-value=2.5e-30  Score=258.97  Aligned_cols=281  Identities=22%  Similarity=0.336  Sum_probs=200.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ...+|+||||||||+++|..|++.|++|+|+|+.+.+||...+  .+|...+..                          
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~--------------------------  191 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDK--------------------------  191 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCH--------------------------
Confidence            4579999999999999999999999999999999999996432  233221100                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~  198 (477)
                                  .+.....+.+++.++++..++...  .   .+...+   ....||+||+|||+.+.   .+|+.+  .
T Consensus       192 ------------~~~~~~~~~~~~~Gv~~~~~~~v~--~---~~~~~~---~~~~~D~vilAtGa~~~~~~~i~g~~--~  249 (467)
T TIGR01318       192 ------------AVLSRRREIFTAMGIEFHLNCEVG--R---DISLDD---LLEDYDAVFLGVGTYRSMRGGLPGED--A  249 (467)
T ss_pred             ------------HHHHHHHHHHHHCCCEEECCCEeC--C---ccCHHH---HHhcCCEEEEEeCCCCCCcCCCCCcC--C
Confidence                        011112244566788877664321  1   111111   12479999999999873   455543  3


Q ss_pred             ceEecchhhh--------cc---------cCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHH
Q 011787          199 KRIVSSTGAL--------AL---------NEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK  259 (477)
Q Consensus       199 ~~~~~~~~~~--------~~---------~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~  259 (477)
                      ..+++..++.        .+         ...+++++|+|+|.+|+++|..+.+.|. +||++++.+.. ++..+.++  
T Consensus       250 ~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~--  327 (467)
T TIGR01318       250 PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV--  327 (467)
T ss_pred             CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH--
Confidence            3344432211        01         1246899999999999999999999995 79999987754 55444332  


Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLG  322 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~l~  322 (477)
                         +.+++.||++++++.++++..++ +.+. +++...               .+++..++++|.||+++|++|+...+ 
T Consensus       328 ---~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-  403 (467)
T TIGR01318       328 ---ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-  403 (467)
T ss_pred             ---HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-
Confidence               34567899999999999997643 3332 333210               02345689999999999999986433 


Q ss_pred             ccccceeecCCCCeecC----CCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          323 LDKIGVETDKMGRIPVN----ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       323 ~~~~gl~~~~~g~i~vd----~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ++..+++++++|++.||    ++++|+.|+|||+|||+..+.++..|+.+|+.||.+|..
T Consensus       404 ~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       404 LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHH
Confidence            56678888888999999    678999999999999999888889999999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.98  E-value=2.2e-30  Score=270.09  Aligned_cols=281  Identities=22%  Similarity=0.326  Sum_probs=199.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..++|+||||||||++||..|++.|++|+|+|+.+.+||...+  .+|...+..                          
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l~~--------------------------  377 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKLDK--------------------------  377 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccCCH--------------------------
Confidence            4679999999999999999999999999999999999997543  233221100                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~  198 (477)
                       .           +.....+.+++.++++..+.....+     +...+   ....||+|++|||+...   .+|+..  .
T Consensus       378 -~-----------~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~~---~~~~~DavilAtGa~~~~~l~i~g~~--~  435 (654)
T PRK12769        378 -S-----------LLARRREIFSAMGIEFELNCEVGKD-----ISLES---LLEDYDAVFVGVGTYRSMKAGLPNED--A  435 (654)
T ss_pred             -H-----------HHHHHHHHHHHCCeEEECCCEeCCc-----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCC--C
Confidence             0           1111123455668887766432111     11111   12469999999998753   344443  2


Q ss_pred             ceEecchhhh--------c---------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHH
Q 011787          199 KRIVSSTGAL--------A---------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK  259 (477)
Q Consensus       199 ~~~~~~~~~~--------~---------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~  259 (477)
                      ..+++..+++        .         ....+++++|||+|.+|+++|..+.+.|. +|+++++++.. ++..+.+   
T Consensus       436 ~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e---  512 (654)
T PRK12769        436 PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE---  512 (654)
T ss_pred             CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH---
Confidence            3343321110        1         11246899999999999999999999986 69999987654 5544332   


Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLG  322 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~------~---------~~~~~~i~~D~vi~a~G~~p~~~~l~  322 (477)
                        .+.+++.||++++++.++++..+ ++.+. +++...      .         .++..++++|.||+|+|+.|+...+ 
T Consensus       513 --~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-  589 (654)
T PRK12769        513 --VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-  589 (654)
T ss_pred             --HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-
Confidence              34567889999999999999754 34432 333210      0         2334579999999999999996433 


Q ss_pred             ccccceeecCCCCeecCC----CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          323 LDKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       323 ~~~~gl~~~~~g~i~vd~----~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ++..+++++++|.|.+|+    +++|+.|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus       590 ~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        590 LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            677789999999999986    48999999999999999999999999999999999964

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.97  E-value=3.7e-30  Score=237.54  Aligned_cols=292  Identities=21%  Similarity=0.322  Sum_probs=214.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ...+++|||+|+|.+|+++...|-..-++|++|++++.+    +..+..||...                 |      .+
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF----lFTPLLpS~~v-----------------G------Tv  104 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF----LFTPLLPSTTV-----------------G------TV  104 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhccccccceEEeccccce----EEeeccCCccc-----------------c------ce
Confidence            446789999999999999999999889999999997655    33333333211                 0      01


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhh--CCeEEEEeEEEEecCCEEEEEec----C--CceEEEEecEEEEccCCCC--C
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKK--NKVTYVKGYGKFISPSEVSVDTI----E--GGNTVVKGKNIIIATGSDV--K  189 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~v~~~----~--g~~~~i~~d~lvlAtG~~~--~  189 (477)
                      ..+.+.+.           +....++  .++.++...+..+|+....|...    +  ..+..+.|||||+|+|+.+  +
T Consensus       105 e~rSIvEP-----------Ir~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  105 ELRSIVEP-----------IRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             eehhhhhh-----------HHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            11111111           1111111  26788888888899877666532    2  2346799999999999998  4


Q ss_pred             CCCCCccCCceEecchhhhcc--------------------cCCCCeeEEEcccHHHHHHHHHHHHc-------------
Q 011787          190 SLPGITIDEKRIVSSTGALAL--------------------NEVPKKLVVIGAGYIGLEMGSVWARL-------------  236 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~~--------------------~~~~~~v~IiG~G~~g~e~a~~l~~~-------------  236 (477)
                      .+||....+..+....++.+.                    ++.--+++|||||++|+|+|..|+.+             
T Consensus       174 gipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~  253 (491)
T KOG2495|consen  174 GIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELK  253 (491)
T ss_pred             CCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcch
Confidence            678876554443333333332                    11124799999999999999988654             


Q ss_pred             -CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          237 -GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       237 -g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                       ..+||+++..+.+++.||+.+.+..++.+.+.||.+.+++.|+.+.  +..+.+...   +|+.+++++-+++|++|..
T Consensus       254 ~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~--~~~I~~~~~---~g~~~~iPYG~lVWatG~~  328 (491)
T KOG2495|consen  254 KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVT--EKTIHAKTK---DGEIEEIPYGLLVWATGNG  328 (491)
T ss_pred             hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeec--CcEEEEEcC---CCceeeecceEEEecCCCC
Confidence             3579999999999999999999999999999999999999999984  444444432   5666899999999999988


Q ss_pred             CCCCCCCccccceeecCCC--CeecCCCCC-CCCCCeEEecccC---CCCCchhHHHHHHHHHHHHHc
Q 011787          316 PFTAGLGLDKIGVETDKMG--RIPVNERFA-TNIPGVYAIGDVI---PGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       316 p~~~~l~~~~~gl~~~~~g--~i~vd~~l~-t~~~~vya~GD~~---~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      |..-   ...+.-.+++.|  ++.||++|| .+.+||||+|||+   +.+.++..|.+||.++|+++-
T Consensus       329 ~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  329 PRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             Cchh---hhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence            8764   233334445555  899999999 7899999999999   345588999999999999884

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.97  E-value=5.1e-29  Score=250.43  Aligned_cols=285  Identities=24%  Similarity=0.323  Sum_probs=193.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..++|+|||||+||++||..|++.|++|+|+|+.+.+||.+.+ + +|...+                          +-
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~-g-ip~~~~--------------------------~~  193 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY-G-IPNMKL--------------------------DK  193 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec-c-CCCccC--------------------------CH
Confidence            3479999999999999999999999999999998888886532 1 221110                          00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCC--CCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKS--LPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~--~~g~~~~~  198 (477)
                       .           +.....+++++.+++++.+.....+     +.. +.  ....||+|++|||+. |..  +||.+  .
T Consensus       194 -~-----------~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~-~~--~~~~~d~VilAtGa~~~~~l~i~G~~--~  251 (485)
T TIGR01317       194 -A-----------IVDRRIDLLSAEGIDFVTNTEIGVD-----ISA-DE--LKEQFDAVVLAGGATKPRDLPIPGRE--L  251 (485)
T ss_pred             -H-----------HHHHHHHHHHhCCCEEECCCEeCCc-----cCH-HH--HHhhCCEEEEccCCCCCCcCCCCCcC--C
Confidence             0           0111124456678888777543211     111 11  235799999999998 543  44433  3


Q ss_pred             ceEecchhhh----------------cccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCC---------
Q 011787          199 KRIVSSTGAL----------------ALNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPS---------  252 (477)
Q Consensus       199 ~~~~~~~~~~----------------~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~---------  252 (477)
                      ..+++..+++                .....+++|+|||+|.+|+|+|..+.+.|. +|+++++.+..+..         
T Consensus       252 ~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~  331 (485)
T TIGR01317       252 KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPE  331 (485)
T ss_pred             CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCc
Confidence            4455432221                111357999999999999999888877774 79999887765321         


Q ss_pred             CCH--HHHHHHHHHHHhcCcEE-EeCceEEEEEEcC-CeEE-EEEee-----cC---------CCceEEEEcCEEEEeec
Q 011787          253 MDG--EIRKQFQRSLEKQKMKF-MLKTKVVGVDLSG-DGVK-LTLEP-----AA---------GGEKTILEADVVLVSAG  313 (477)
Q Consensus       253 ~~~--~~~~~~~~~l~~~gv~~-~~~~~v~~i~~~~-~~~~-v~~~~-----~~---------~~~~~~i~~D~vi~a~G  313 (477)
                      ++.  +.....++..+..|+.+ ++++.+.++..++ +.+. +++..     ..         .++..++++|.||+++|
T Consensus       332 ~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG  411 (485)
T TIGR01317       332 WPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMG  411 (485)
T ss_pred             cchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccC
Confidence            111  12222334444456644 4677788887653 3433 33210     00         23345899999999999


Q ss_pred             CC-CCCCCCCccccceeecCCCCee-cCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          314 RT-PFTAGLGLDKIGVETDKMGRIP-VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       314 ~~-p~~~~l~~~~~gl~~~~~g~i~-vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      .. |+..+  ++..|++++++|++. +|++++|+.|+|||+|||+.++.+...|+.+|+.||.+|..
T Consensus       412 ~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       412 FVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             cCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence            86 88775  567788888888885 46789999999999999998888889999999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=4.2e-29  Score=259.34  Aligned_cols=282  Identities=20%  Similarity=0.279  Sum_probs=199.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ...+|+||||||||+++|..|++.|++|+|+|+.+.+||.+. ++..+ ..+                          +.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~-~gip~-~~l--------------------------~~  360 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT-FGIPP-FKL--------------------------DK  360 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee-ccCCc-ccC--------------------------CH
Confidence            468999999999999999999999999999999999999753 23222 110                          00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~~  198 (477)
                                  .+.....+++...++++..+.....     .+...+   ....||+|++|||+.+.   .+|+.+  .
T Consensus       361 ------------~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~~~---l~~~~DaV~latGa~~~~~~~i~g~~--~  418 (639)
T PRK12809        361 ------------TVLSQRREIFTAMGIDFHLNCEIGR-----DITFSD---LTSEYDAVFIGVGTYGMMRADLPHED--A  418 (639)
T ss_pred             ------------HHHHHHHHHHHHCCeEEEcCCccCC-----cCCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCc--c
Confidence                        0011122445667888876643211     111111   23469999999999763   344433  2


Q ss_pred             ceEecchhh--------hcc---------cCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHHHH
Q 011787          199 KRIVSSTGA--------LAL---------NEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK  259 (477)
Q Consensus       199 ~~~~~~~~~--------~~~---------~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~~~  259 (477)
                      ..+++..++        ..+         ...+++++|+|+|.+++++|..+.+.|. +||++++++.. ++..+.++. 
T Consensus       419 ~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-  497 (639)
T PRK12809        419 PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-  497 (639)
T ss_pred             CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-
Confidence            334432111        111         1247899999999999999999989985 79999987655 554443332 


Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLG  322 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~---------------~~~~~~~i~~D~vi~a~G~~p~~~~l~  322 (477)
                          .+++.||++++++.++++..++ +.+. +.+...               ..++...+++|.||+|+|+.|+...+ 
T Consensus       498 ----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-  572 (639)
T PRK12809        498 ----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-  572 (639)
T ss_pred             ----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-
Confidence                2467899999999999997543 4443 332110               02345689999999999999986433 


Q ss_pred             ccccceeecCCCCeecCC----CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787          323 LDKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       323 ~~~~gl~~~~~g~i~vd~----~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      ++..++.++++|.|.+|+    +++|+.|+|||+||++.++.++..|+.+|+.||.+|...
T Consensus       573 ~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~  633 (639)
T PRK12809        573 LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTL  633 (639)
T ss_pred             ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            667889888889999986    378999999999999998889999999999999999743

>PRK13984 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.9e-28  Score=254.33  Aligned_cols=281  Identities=25%  Similarity=0.342  Sum_probs=190.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ....+|+|||+|+||+++|..|++.|++|+|+|+.+.+||...+ + +|...+                          .
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~-~-i~~~~~--------------------------~  332 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY-G-IPSYRL--------------------------P  332 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee-c-CCcccC--------------------------C
Confidence            45678999999999999999999999999999998888886432 1 221110                          0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-C--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~--~~~g~~~~  197 (477)
                       .+           +.....+.+++.+++++.+.....+     +...+   ....||+||||||+.+ +  .+||.+  
T Consensus       333 -~~-----------~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l~i~G~~--  390 (604)
T PRK13984        333 -DE-----------ALDKDIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRSTRIPGTD--  390 (604)
T ss_pred             -HH-----------HHHHHHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccCCCCCcC--
Confidence             00           0111123456678888776443211     11111   2357999999999874 2  345533  


Q ss_pred             CceEecchhhhc-c----------cCCCCeeEEEcccHHHHHHHHHHHHcCC------cEEEEEeC--CCcCCCCCHHHH
Q 011787          198 EKRIVSSTGALA-L----------NEVPKKLVVIGAGYIGLEMGSVWARLGS------EVTVVEFA--ADIVPSMDGEIR  258 (477)
Q Consensus       198 ~~~~~~~~~~~~-~----------~~~~~~v~IiG~G~~g~e~a~~l~~~g~------~Vtli~~~--~~~~~~~~~~~~  258 (477)
                      ...+++..+... +          ...+++++|||||.+|+|+|..+.+++.      +|+++...  ...++..+.+  
T Consensus       391 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e--  468 (604)
T PRK13984        391 HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEE--  468 (604)
T ss_pred             CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHH--
Confidence            344555444332 1          1237899999999999999999998753      67876432  2223322222  


Q ss_pred             HHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCc
Q 011787          259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGL  323 (477)
Q Consensus       259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~  323 (477)
                        +.+. .+.||+++++..++++..+++++. +++...              .++++.++++|.|++|+|++|++..+..
T Consensus       469 --~~~~-~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~  545 (604)
T PRK13984        469 --IEEG-LEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPE  545 (604)
T ss_pred             --HHHH-HHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhh
Confidence              2333 457999999998888876555543 333210              0234568999999999999999886421


Q ss_pred             c-ccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          324 D-KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       324 ~-~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      + ..++.. ++|+|.||+++||++|+|||+||++.++.+ ..|+.+|+.||.+|..
T Consensus       546 ~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~~  599 (604)
T PRK13984        546 ELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGIDM  599 (604)
T ss_pred             hhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHHH
Confidence            1 123554 358899999999999999999999988765 6799999999999864

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.97  E-value=7.8e-28  Score=237.82  Aligned_cols=289  Identities=22%  Similarity=0.275  Sum_probs=194.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH--CCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ...+|+||||||||++||..|++  .|++|+|+|+.+.+||... .+..|.....                         
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gvaP~~~~~-------------------------   78 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVAPDHPET-------------------------   78 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccCCCcchh-------------------------
Confidence            35789999999999999999987  6999999999999999643 3333322110                         


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-C--CCCCCcc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITI  196 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~--~~~g~~~  196 (477)
                                   ..+...+...+...+++++.+....     ..+..++-   ...||+||||||+.+ +  .+||.  
T Consensus        79 -------------k~v~~~~~~~~~~~~v~~~~nv~vg-----~dvtl~~L---~~~yDaVIlAtGa~~~~~l~IpG~--  135 (491)
T PLN02852         79 -------------KNVTNQFSRVATDDRVSFFGNVTLG-----RDVSLSEL---RDLYHVVVLAYGAESDRRLGIPGE--  135 (491)
T ss_pred             -------------HHHHHHHHHHHHHCCeEEEcCEEEC-----ccccHHHH---hhhCCEEEEecCCCCCCCCCCCCC--
Confidence                         0011112233445677766542221     11222222   347999999999986 3  34553  


Q ss_pred             CCceEecchhhhcc-------------cCCCCeeEEEcccHHHHHHHHHHHHc--------------------CC-cEEE
Q 011787          197 DEKRIVSSTGALAL-------------NEVPKKLVVIGAGYIGLEMGSVWARL--------------------GS-EVTV  242 (477)
Q Consensus       197 ~~~~~~~~~~~~~~-------------~~~~~~v~IiG~G~~g~e~a~~l~~~--------------------g~-~Vtl  242 (477)
                      +...+++..++..+             ...+++++|||+|++|+++|..|.+.                    +. +|++
T Consensus       136 d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~i  215 (491)
T PLN02852        136 DLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYL  215 (491)
T ss_pred             CCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEE
Confidence            34567776665321             12478999999999999999998775                    54 6999


Q ss_pred             EEeCCCc-CCCCCHHHHH-------------------------------------HHHHHHHh---------cCcEEEeC
Q 011787          243 VEFAADI-VPSMDGEIRK-------------------------------------QFQRSLEK---------QKMKFMLK  275 (477)
Q Consensus       243 i~~~~~~-~~~~~~~~~~-------------------------------------~~~~~l~~---------~gv~~~~~  275 (477)
                      +.|+... .+...+++.+                                     .+.+...+         +++.|++.
T Consensus       216 v~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~  295 (491)
T PLN02852        216 VGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFF  295 (491)
T ss_pred             EEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEcc
Confidence            9998853 1111222211                                     11222112         57999999


Q ss_pred             ceEEEEEEc--C-CeEE-EEEeec--------------CCCceEEEEcCEEEEeecCC--CCCCCCCccccceeecCCCC
Q 011787          276 TKVVGVDLS--G-DGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRT--PFTAGLGLDKIGVETDKMGR  335 (477)
Q Consensus       276 ~~v~~i~~~--~-~~~~-v~~~~~--------------~~~~~~~i~~D~vi~a~G~~--p~~~~l~~~~~gl~~~~~g~  335 (477)
                      ....+|..+  + +++. +++...              .+++.+.++||.||.++|++  |+.........++..+.+|+
T Consensus       296 ~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~  375 (491)
T PLN02852        296 RNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGR  375 (491)
T ss_pred             CCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCce
Confidence            999999742  1 3332 444310              13455679999999999998  55442112344677788899


Q ss_pred             eecCCCCCCCCCCeEEecccCCCCC-chhHHHHHHHHHHHHHcCC
Q 011787          336 IPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       336 i~vd~~l~t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~~~  379 (477)
                      |.+|+.++|++|+|||+|||..+|. +...++.+|+.++++|+..
T Consensus       376 V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d  420 (491)
T PLN02852        376 VLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAED  420 (491)
T ss_pred             EEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHH
Confidence            9999888999999999999998876 7788999999999999743

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-29  Score=225.82  Aligned_cols=290  Identities=29%  Similarity=0.399  Sum_probs=212.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ..|||+||||||||-+||.+.+|.|.+.-++-  +++||+.+..-.+...                  .+++    ...-
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENf------------------Isv~----~teG  265 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENF------------------ISVP----ETEG  265 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhhe------------------eccc----cccc
Confidence            35999999999999999999999999877773  5688875433211100                  0000    1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec-----CCEEEEEecCCceEEEEecEEEEccCCCCC--CCCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS-----PSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG  193 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-----~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g  193 (477)
                      ++           +...++...+++.|++++. ++..+.     .+-+.|.+++|  -.+.++.+|||||++.+  .+||
T Consensus       266 pk-----------l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPG  332 (520)
T COG3634         266 PK-----------LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPG  332 (520)
T ss_pred             hH-----------HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCc
Confidence            11           2223344455566666554 222222     34578888888  78999999999999986  4677


Q ss_pred             Cc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcE
Q 011787          194 IT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMK  271 (477)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~  271 (477)
                      .. ...+.+..+..+..-...+|+|+|||||.+|+|.|-.|+-.-..||+++-.+.+-      .-+.+++.|+. .+++
T Consensus       333 E~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~  406 (520)
T COG3634         333 EDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVT  406 (520)
T ss_pred             hHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHHHHHHhcCCCcE
Confidence            54 3445565555555555569999999999999999999988878999997544321      12335555554 4899


Q ss_pred             EEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787          272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy  350 (477)
                      ++++..-+++.++++++. +.+.+..+++...++-+-|++-+|..||+++  ++.. ++++++|-|.||....||+|+||
T Consensus       407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD~~g~TsvpGvF  483 (520)
T COG3634         407 IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVF  483 (520)
T ss_pred             EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEEecCCCcCCCcee
Confidence            999999999998877665 7777777777788999999999999999998  5665 89999999999999999999999


Q ss_pred             EecccCCCC-CchhHHHHHHHHHHHHHc
Q 011787          351 AIGDVIPGP-MLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       351 a~GD~~~~~-~~~~~A~~~g~~aa~~i~  377 (477)
                      |+|||+..| .....|+-+|..|+-..+
T Consensus       484 AAGD~T~~~yKQIIIamG~GA~AaL~AF  511 (520)
T COG3634         484 AAGDCTTVPYKQIIIAMGEGAKASLSAF  511 (520)
T ss_pred             ecCcccCCccceEEEEecCcchhhhhhh
Confidence            999999655 355667777666655443

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=230.98  Aligned_cols=370  Identities=27%  Similarity=0.294  Sum_probs=256.4

Q ss_pred             EEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           46 VVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        46 vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      ++|||+|+||+++|..|++.  +.+++++.+......    ..|.-+..+..               +.      .....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~~~---------------~~------~~~~~   55 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY----YRCPLSLYVGG---------------GI------ASLED   55 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC----CCCccchHHhc---------------cc------CCHHH
Confidence            58999999999999999886  567887777543211    11100000000               00      00000


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      +.           .... +..+.++++..+ .+..+|.....+.+.+|   ++.||++++|||++|..+|+..  ...++
T Consensus        56 ~~-----------~~~~-~~~~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~--~~~~~  118 (415)
T COG0446          56 LR-----------YPPR-FNRATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISD--WEGVV  118 (415)
T ss_pred             hc-----------ccch-hHHhhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCCccc--cCceE
Confidence            00           0000 113457777765 57889998888888887   8899999999999997766222  22233


Q ss_pred             cc---hhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC-HHHHHHHHHHHHhcCcEEEeC
Q 011787          203 SS---TGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       203 ~~---~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      +.   .+.....   ...++++|+|+|++|+++|..+++.|.+|++++..+++++.+- +++.+.+.+.++++||+++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  198 (415)
T COG0446         119 TLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLG  198 (415)
T ss_pred             EECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeC
Confidence            32   2222221   1258999999999999999999999999999999999988776 899999999999999999999


Q ss_pred             ceEEEEEEcCCeEE---EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc-eeecCCCCeecCCCCCCC-CCCeE
Q 011787          276 TKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG-VETDKMGRIPVNERFATN-IPGVY  350 (477)
Q Consensus       276 ~~v~~i~~~~~~~~---v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g-l~~~~~g~i~vd~~l~t~-~~~vy  350 (477)
                      ..+.+++...+...   +...     ++..+++|.+++++|.+||...  .++.+ .....+|++.||++++|+ .++||
T Consensus       199 ~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~  271 (415)
T COG0446         199 TKVVGVEGKGNTLVVERVVGI-----DGEEIKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVY  271 (415)
T ss_pred             CceEEEEcccCcceeeEEEEe-----CCcEEEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEE
Confidence            99999987765543   2332     6678999999999999999764  34443 145567899999999997 99999


Q ss_pred             EecccCCCC----------CchhHHHHHHHHHHHHHcCCCCCCCCCCCce--EEEcCCCeeeecCCHHHHHHcCCCEEEE
Q 011787          351 AIGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPG--VVYTHPEVASVGKTEEQVKELGVEYRVG  418 (477)
Q Consensus       351 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~  418 (477)
                      |+|||+..+          ..+..|..++++++.++.+. .++ ....+.  .-.........|+++.  ....++ ...
T Consensus       272 a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~  346 (415)
T COG0446         272 AAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVL  346 (415)
T ss_pred             eccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-ccc-ccccCceEEEEcCeEEEEecCCcc--ccccee-eeE
Confidence            999998432          25778999999999999876 222 222333  2334556788899987  444444 233


Q ss_pred             EEecCccccchhcC-CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787          419 KFPFLANSRAKAID-DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH  471 (477)
Q Consensus       419 ~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~  471 (477)
                      .+......+..... ......|+.++.++++++|+++ -. ....++.++.++.
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  398 (415)
T COG0446         347 VVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIG  398 (415)
T ss_pred             EEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HH-HHhhhhhhhhhhh
Confidence            22333332333333 2345788999989999999999 33 5666666666655

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.96  E-value=2.3e-26  Score=248.93  Aligned_cols=281  Identities=20%  Similarity=0.225  Sum_probs=187.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ...+||+||||||||++||..|++.|++|+|+|+++.+||++..... ++                     +.       
T Consensus       161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~---------------------g~-------  212 (985)
T TIGR01372       161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETID---------------------GK-------  212 (985)
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccC---------------------Cc-------
Confidence            34689999999999999999999999999999999899997643210 00                     00       


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEe-EEEEecCCE-E-EEEe------------cCCceEEEEecEEEEc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKG-YGKFISPSE-V-SVDT------------IEGGNTVVKGKNIIIA  183 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~-~-~v~~------------~~g~~~~i~~d~lvlA  183 (477)
                      +..+           +.......+... +++++.+ ++..+.... + .+..            .......+.||+||||
T Consensus       213 ~~~~-----------~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILA  281 (985)
T TIGR01372       213 PAAD-----------WAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLA  281 (985)
T ss_pred             cHHH-----------HHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEc
Confidence            0000           001111222223 4776654 333333221 1 0100            0011236899999999


Q ss_pred             cCCCCCCCCCCccCCceEecchhhhcc----c-CCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCCCCHHH
Q 011787          184 TGSDVKSLPGITIDEKRIVSSTGALAL----N-EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSMDGEI  257 (477)
Q Consensus       184 tG~~~~~~~g~~~~~~~~~~~~~~~~~----~-~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~~~~~  257 (477)
                      ||+.++.+|..+.+...+++......+    . ..+++++|||+|++++|+|..|++.|. .|+++++.+.+        
T Consensus       282 TGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------  353 (985)
T TIGR01372       282 TGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------  353 (985)
T ss_pred             CCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------
Confidence            999986544322334455555433322    1 247899999999999999999999995 57788766533        


Q ss_pred             HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccce--eecCC--
Q 011787          258 RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV--ETDKM--  333 (477)
Q Consensus       258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~--  333 (477)
                      ...+.+.+++.||++++++.++++..++....+++.. .++++++++||.|+++.|++||+++  +..++.  ..++.  
T Consensus       354 ~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~~~  430 (985)
T TIGR01372       354 SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAAIA  430 (985)
T ss_pred             hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccccC
Confidence            2345677889999999999999997655433455542 1345678999999999999999986  444443  33322  


Q ss_pred             CCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       334 g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      +++.     .|++|+||++||+++.. ....|..+|+.||..++
T Consensus       431 ~~~~-----~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       431 AFLP-----GDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA  468 (985)
T ss_pred             ceec-----CCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence            1211     37899999999998655 45669999999998885

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.6e-27  Score=199.81  Aligned_cols=287  Identities=26%  Similarity=0.286  Sum_probs=199.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC----CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG----ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~----~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      +.+|+|||+|||+.+||+++++..++-+|+|-.-    ..||+....--+.                .++  |++ +  -
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~ve----------------NfP--GFP-d--g   66 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVE----------------NFP--GFP-D--G   66 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccc----------------cCC--CCC-c--c
Confidence            3589999999999999999999999999999621    3456543321110                010  111 0  0


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCE--EEEEecCCceEEEEecEEEEccCCCCC--CCCCC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE--VSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGI  194 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~  194 (477)
                      +.-++           +.+.+.....+.+.+++..++..+|...  +.+.++.   +.+.+|.+|+|||+..+  .+|+.
T Consensus        67 i~G~~-----------l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~---~~v~~~avI~atGAsAkRl~~pg~  132 (322)
T KOG0404|consen   67 ITGPE-----------LMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDA---RPVTADAVILATGASAKRLHLPGE  132 (322)
T ss_pred             cccHH-----------HHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecC---CceeeeeEEEecccceeeeecCCC
Confidence            11111           2233344556678999999887776544  4444433   57899999999998875  45654


Q ss_pred             cc---CCceEecchhhh--cccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHH-HHHHHhc
Q 011787          195 TI---DEKRIVSSTGAL--ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF-QRSLEKQ  268 (477)
Q Consensus       195 ~~---~~~~~~~~~~~~--~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~-~~~l~~~  268 (477)
                      +.   ..+.+-.+.-+.  .-....|..+|||||.+++|-|..|.+.+.+|++++|++.+..      +..+ ++.++..
T Consensus       133 ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~np  206 (322)
T KOG0404|consen  133 GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNP  206 (322)
T ss_pred             CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHhcCC
Confidence            31   111121111111  1123478899999999999999999999999999999997642      2223 3445666


Q ss_pred             CcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCC-CCCCCC
Q 011787          269 KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE-RFATNI  346 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~  346 (477)
                      +|++++++.+.+...+.+.+. +.+.+..+++...++.+-+++++|..|++.+  ++. .+++|.+|+|.+-+ .-.||+
T Consensus       207 nI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~--l~g-qve~d~~GYi~t~pgts~Tsv  283 (322)
T KOG0404|consen  207 NIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKF--LKG-QVELDEDGYIVTRPGTSLTSV  283 (322)
T ss_pred             CeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhH--hcC-ceeeccCceEEeccCcccccc
Confidence            899999998888876644433 6677777888889999999999999999997  444 69999999999885 456999


Q ss_pred             CCeEEecccCCC-CCchhHHHHHHHHHH
Q 011787          347 PGVYAIGDVIPG-PMLAHKAEEDGVACV  373 (477)
Q Consensus       347 ~~vya~GD~~~~-~~~~~~A~~~g~~aa  373 (477)
                      |++||+||+... +..+..|...|-++|
T Consensus       284 pG~FAAGDVqD~kyRQAvTaAgsGciaa  311 (322)
T KOG0404|consen  284 PGVFAAGDVQDKKYRQAVTAAGSGCIAA  311 (322)
T ss_pred             cceeeccccchHHHHHHHhhhccchhhh
Confidence            999999999843 334444444444443

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.95  E-value=1.4e-26  Score=238.07  Aligned_cols=279  Identities=27%  Similarity=0.373  Sum_probs=192.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ....+|+|||+||+|+++|..|++.|++|+++|+.+.+||.+.+ + +|...+.                          
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~-g-ip~~~~~--------------------------  186 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY-G-IPAYRLP--------------------------  186 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-c-CCCccCC--------------------------
Confidence            34679999999999999999999999999999999999996432 1 2321110                          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~  197 (477)
                       .+           +.....+.+.+.++++..+.....+     +....   ....||+|++|||+...   .+++..  
T Consensus       187 -~~-----------~~~~~l~~~~~~Gv~~~~~~~~~~~-----~~~~~---~~~~~D~Vi~AtG~~~~~~~~i~g~~--  244 (564)
T PRK12771        187 -RE-----------VLDAEIQRILDLGVEVRLGVRVGED-----ITLEQ---LEGEFDAVFVAIGAQLGKRLPIPGED--  244 (564)
T ss_pred             -HH-----------HHHHHHHHHHHCCCEEEeCCEECCc-----CCHHH---HHhhCCEEEEeeCCCCCCcCCCCCCc--
Confidence             00           0001112344567777655332111     00000   12358999999998753   334422  


Q ss_pred             CceEecchhhhc------ccCCCCeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCc-CCCCCHHHHHHHHHHHHhcC
Q 011787          198 EKRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       198 ~~~~~~~~~~~~------~~~~~~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~-~~~~~~~~~~~~~~~l~~~g  269 (477)
                      ...++...++..      ....+++++|+|+|.++++++..+.+++ .+|+++.+.+.. ++..+.++    . ...+.|
T Consensus       245 ~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~----~-~a~~~G  319 (564)
T PRK12771        245 AAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI----E-EALREG  319 (564)
T ss_pred             cCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH----H-HHHHcC
Confidence            222333222221      1234799999999999999999898888 679999887643 44333332    2 235679


Q ss_pred             cEEEeCceEEEEEEcCCeE-EEEE---eec---C-------CCceEEEEcCEEEEeecCCCCCCCCCccc-cceeecCCC
Q 011787          270 MKFMLKTKVVGVDLSGDGV-KLTL---EPA---A-------GGEKTILEADVVLVSAGRTPFTAGLGLDK-IGVETDKMG  334 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~-~v~~---~~~---~-------~~~~~~i~~D~vi~a~G~~p~~~~l~~~~-~gl~~~~~g  334 (477)
                      |+++++..+.++..++++. .+++   ...   .       .++..++++|.||+|+|..|+..+  +++ .++. +++|
T Consensus       320 Vki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~--~~~~~gl~-~~~G  396 (564)
T PRK12771        320 VEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAG--LESVPGVE-VGRG  396 (564)
T ss_pred             CEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhh--hhhccCcc-cCCC
Confidence            9999999999997665432 2221   110   0       344568999999999999998876  343 5677 7789


Q ss_pred             CeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          335 RIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       335 ~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      +|.||+ .++|+.|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus       397 ~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~  440 (564)
T PRK12771        397 VVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID  440 (564)
T ss_pred             CEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence            999998 6889999999999999889999999999999999985

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-27  Score=217.03  Aligned_cols=315  Identities=20%  Similarity=0.195  Sum_probs=220.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccC-chhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIP-SKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p-~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      .+...+|||+|.+..+++...+..  +.+|.+|..++.+-     +..+| |+.+|.....-......+..+.=....+.
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP-----YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsif  251 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP-----YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIF  251 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc-----ccCCCcchhceecCCCChhhheeecccCCccceeE
Confidence            356789999999988887776655  67899987654431     11111 33333211110000000111100001111


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID  197 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~  197 (477)
                      +..+.++-...+         ......-||.+++| ++..+|.+...|.++||  .+|.||.++||||.+|...+-++..
T Consensus       252 fepd~FfvspeD---------Lp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A  320 (659)
T KOG1346|consen  252 FEPDGFFVSPED---------LPKAVNGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEA  320 (659)
T ss_pred             ecCCcceeChhH---------CcccccCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhc
Confidence            111111100000         01122347889988 57889999999999999  8999999999999999766544321


Q ss_pred             -------CceEecchhhhcccCC---CCeeEEEcccHHHHHHHHHHHHc----CCcEEEEEeCCCcC-CCCCHHHHHHHH
Q 011787          198 -------EKRIVSSTGALALNEV---PKKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIV-PSMDGEIRKQFQ  262 (477)
Q Consensus       198 -------~~~~~~~~~~~~~~~~---~~~v~IiG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~-~~~~~~~~~~~~  262 (477)
                             -..+.+..|+.++++.   .++|.|||+|+.|.|+|..|.+.    |.+|+-+......+ ..+++.++++-.
T Consensus       321 ~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~  400 (659)
T KOG1346|consen  321 SEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTI  400 (659)
T ss_pred             CHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHH
Confidence                   1245567777766543   58999999999999999998754    66787554443333 356778899999


Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCC-CCeecCCC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM-GRIPVNER  341 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~-g~i~vd~~  341 (477)
                      +.+++.||.++.+..|.++..+.+.+.+.+.     +|.++..|+|++|+|-.||++.  .+..|+++|++ |++.||..
T Consensus       401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~-----dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnae  473 (659)
T KOG1346|consen  401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLS-----DGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAE  473 (659)
T ss_pred             HHHHhcCceeccchhhhhhhhhccceEEEec-----CCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeehe
Confidence            9999999999999999999888888888887     7889999999999999999997  77888999876 88999999


Q ss_pred             CCCCCCCeEEecccCCCC---------CchhHHHHHHHHHHHHHcCCC
Q 011787          342 FATNIPGVYAIGDVIPGP---------MLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       342 l~t~~~~vya~GD~~~~~---------~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      |+.. .|||++||++...         ..+..|.-.||.|++||.+-.
T Consensus       474 L~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa  520 (659)
T KOG1346|consen  474 LKAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA  520 (659)
T ss_pred             eecc-cceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence            9864 7999999998321         245678889999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.94  E-value=6.2e-25  Score=218.29  Aligned_cols=313  Identities=17%  Similarity=0.207  Sum_probs=186.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCc--------hhhhhhhHHHHHHHhhhhhCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS--------KALLHSSHMYHEAMHSFASHG  111 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~--------~~l~~~~~~~~~~~~~~~~~g  111 (477)
                      +...++|+|||||+|||+||.+|++.|++|+++|+++.+||+|.+....+.        ....+ ...|..+.......-
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~-s~~Y~~L~tn~p~~~   85 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH-SSVYESLRTNLPREC   85 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccc-hhhhhhhhccCCHhh
Confidence            344689999999999999999999999999999999999999987643321        11101 112222221111111


Q ss_pred             ccccccccC--------hHHHHHHHHHHHHHHHHHHHHHhhhCCeE--EE-EeEEEEecC--CEEEEEecCC--ceEEEE
Q 011787          112 VKFSSVEVD--------LPAMMAQKDKAVSNLTRGIEGLFKKNKVT--YV-KGYGKFISP--SEVSVDTIEG--GNTVVK  176 (477)
Q Consensus       112 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~~~~~~--~~~~v~~~~g--~~~~i~  176 (477)
                      +.+.+.++.        ....++.    ...+.+++..+.+..++.  +. ..++..++.  +.+.|.+.++  ...+..
T Consensus        86 m~f~dfp~~~~~~~~~~~~~~fp~----~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~  161 (461)
T PLN02172         86 MGYRDFPFVPRFDDESRDSRRYPS----HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEI  161 (461)
T ss_pred             ccCCCCCCCcccccccCcCCCCCC----HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEE
Confidence            111111000        0000111    122344445555566665  33 234555543  4577766533  223578


Q ss_pred             ecEEEEccC--CCCC--CCCCCc-cCCceEecchhhhc-ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          177 GKNIIIATG--SDVK--SLPGIT-IDEKRIVSSTGALA-LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       177 ~d~lvlAtG--~~~~--~~~g~~-~~~~~~~~~~~~~~-~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      ||+||+|||  +.|.  .+||.. ..+..+++ .+... ....+|+|+|||+|.+|+|+|..|+..+.+|++++|.+...
T Consensus       162 ~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs-~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~  240 (461)
T PLN02172        162 FDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHS-HNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD  240 (461)
T ss_pred             cCEEEEeccCCCCCcCCCCCCcccCCceEEEe-cccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc
Confidence            999999999  5663  456654 23333333 33222 22358999999999999999999999999999999876432


Q ss_pred             CCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc-ee
Q 011787          251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG-VE  329 (477)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g-l~  329 (477)
                      .          ...+......+..+..|..+.. ++.  +++.     +|+.+++|.||+|||++|+.+++  +..+ +.
T Consensus       241 ~----------~~~~~~~~~~v~~~~~I~~~~~-~g~--V~f~-----DG~~~~~D~Ii~~TGy~~~~pfL--~~~~~i~  300 (461)
T PLN02172        241 T----------YEKLPVPQNNLWMHSEIDTAHE-DGS--IVFK-----NGKVVYADTIVHCTGYKYHFPFL--ETNGYMR  300 (461)
T ss_pred             c----------cccCcCCCCceEECCcccceec-CCe--EEEC-----CCCCccCCEEEECCcCCcccccc--Cccccee
Confidence            1          0011112234455666666543 233  4444     56678999999999999999874  3322 22


Q ss_pred             ecCCCCeecCCC-CCCC-CCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787          330 TDKMGRIPVNER-FATN-IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       330 ~~~~g~i~vd~~-l~t~-~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      .+++.....=.+ +-.. .|+++.+|=... ......+..|++++|+-+.|+
T Consensus       301 v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~-~~~f~~~E~Qa~~~a~v~sG~  351 (461)
T PLN02172        301 IDENRVEPLYKHVFPPALAPGLSFIGLPAM-GIQFVMFEIQSKWVAAVLSGR  351 (461)
T ss_pred             eCCCcchhhHHhhcCCCCCCcEEEEecccc-ccCchhHHHHHHHHHHHHcCC
Confidence            322110001111 1123 489999996532 234567889999999999876

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.90  E-value=1e-22  Score=204.88  Aligned_cols=313  Identities=18%  Similarity=0.211  Sum_probs=151.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCcc-C--chhhhhhhHHHHHHHhhhhhCCcccccc-cc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCI-P--SKALLHSSHMYHEAMHSFASHGVKFSSV-EV  119 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~-p--~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~  119 (477)
                      ++|+|||||++||++|..|.+.|++++++|+++.+||.|.+.... +  +..+.+.........-.+.++.++.+.. ..
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            589999999999999999999999999999999999999754311 0  0000000000000000112222221111 11


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeE--E-EEeE---EEEecC----CEEEEEec-CCceEEEEecEEEEccCCC-
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVT--Y-VKGY---GKFISP----SEVSVDTI-EGGNTVVKGKNIIIATGSD-  187 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~---~~~~~~----~~~~v~~~-~g~~~~i~~d~lvlAtG~~-  187 (477)
                      ...++.++.           +.+.+..++.  + +..+   +...++    ..+.|.+. +|+..+-.||+||+|||.. 
T Consensus        82 ~~~~v~~Yl-----------~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~  150 (531)
T PF00743_consen   82 SHSEVLEYL-----------ESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS  150 (531)
T ss_dssp             BHHHHHHHH-----------HHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred             CHHHHHHHH-----------HHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence            222222222           2222222221  1 1112   222222    35777664 4444567899999999964 


Q ss_pred             -CC----CCCCCccCCceEecchhhhccc-CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCC------
Q 011787          188 -VK----SLPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMD------  254 (477)
Q Consensus       188 -~~----~~~g~~~~~~~~~~~~~~~~~~-~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~------  254 (477)
                       |.    .+||++.....++++.+..... ..+|+|+|||+|.+|+++|..+++...+|++..|++.+ +|...      
T Consensus       151 ~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  151 KPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             CESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             CCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence             32    2566653334556655554433 45899999999999999999999999999998887754 33211      


Q ss_pred             -----------------HHHHHHH-HHHHHh------cCcEEE------------------------eCceEEEEEEcCC
Q 011787          255 -----------------GEIRKQF-QRSLEK------QKMKFM------------------------LKTKVVGVDLSGD  286 (477)
Q Consensus       255 -----------------~~~~~~~-~~~l~~------~gv~~~------------------------~~~~v~~i~~~~~  286 (477)
                                       ..+...+ .+.+.+      .|..-.                        ....|.++  .++
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~--~~~  308 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRF--TEN  308 (531)
T ss_dssp             --------------------------------------------------------------------EE-EEEE---SS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence                             0001111 000100      011000                        00011111  111


Q ss_pred             eEEEEEeecCCCceEE-EEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC---CCCCCCeEEecccCCCCCch
Q 011787          287 GVKLTLEPAAGGEKTI-LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF---ATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       287 ~~~v~~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l---~t~~~~vya~GD~~~~~~~~  362 (477)
                        .+.+     .+|++ .++|.||+|||+....+++.  +.-+...+ +.+..-.++   .-..|++..+|=+.......
T Consensus       309 --~v~F-----~DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~f  378 (531)
T PF00743_consen  309 --SVIF-----EDGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIF  378 (531)
T ss_dssp             --EEEE-----TTSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEESS-SBSSS-HH
T ss_pred             --cccc-----cccccccccccccccccccccccccc--cccccccc-cccccccccccccccccccccccccccccccc
Confidence              1222     25565 47999999999999888753  32222222 222222221   12458999999875433356


Q ss_pred             hHHHHHHHHHHHHHcCC
Q 011787          363 HKAEEDGVACVEFLAGK  379 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~  379 (477)
                      ..+..|++++|+-+.|.
T Consensus       379 p~~ElQArw~a~v~sG~  395 (531)
T PF00743_consen  379 PIFELQARWAARVFSGR  395 (531)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             ccccccccccccccccc
Confidence            67899999999999875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.88  E-value=2.3e-22  Score=196.98  Aligned_cols=287  Identities=24%  Similarity=0.278  Sum_probs=200.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+..+|.||||||||++||..|.+.|++|+++|+.+..||...+-  +|...+.                          
T Consensus       121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG--IP~~kl~--------------------------  172 (457)
T COG0493         121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG--IPDFKLP--------------------------  172 (457)
T ss_pred             CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec--Cchhhcc--------------------------
Confidence            345899999999999999999999999999999999999964432  4432211                          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~~~  197 (477)
                                  ..+.+...+.+++.+++|..+.....+     +..++   ..-.||++++|||+.-+   .+|+.+  
T Consensus       173 ------------k~i~d~~i~~l~~~Gv~~~~~~~vG~~-----it~~~---L~~e~Dav~l~~G~~~~~~l~i~g~d--  230 (457)
T COG0493         173 ------------KDILDRRLELLERSGVEFKLNVRVGRD-----ITLEE---LLKEYDAVFLATGAGKPRPLDIPGED--  230 (457)
T ss_pred             ------------chHHHHHHHHHHHcCeEEEEcceECCc-----CCHHH---HHHhhCEEEEeccccCCCCCCCCCcC--
Confidence                        012222335667778888877543321     11111   22356999999998654   344433  


Q ss_pred             CceEecchhhhcc------c-----C----CCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc--CCCCCHHHHH
Q 011787          198 EKRIVSSTGALAL------N-----E----VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI--VPSMDGEIRK  259 (477)
Q Consensus       198 ~~~~~~~~~~~~~------~-----~----~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~--~~~~~~~~~~  259 (477)
                      ...++...+++..      .     .    .+++++|||+|.++++++....++|. +|+.+.+...-  ...++.-...
T Consensus       231 ~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~  310 (457)
T COG0493         231 AKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQ  310 (457)
T ss_pred             CCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchh
Confidence            4455555444321      1     1    13999999999999999999999998 67777522211  1122222244


Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEe---ecC-------------CCceEEEEcCEEEEeecCCCCCCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLE---PAA-------------GGEKTILEADVVLVSAGRTPFTAGL  321 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~---~~~-------------~~~~~~i~~D~vi~a~G~~p~~~~l  321 (477)
                      ...+...++|+.+.+.....++..++ +++. +.+.   ...             .++...+++|.|+.++|+.++....
T Consensus       311 ~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~  390 (457)
T COG0493         311 LEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDG  390 (457)
T ss_pred             hhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccc
Confidence            45566777899999888888887744 4443 2221   110             2455789999999999999886553


Q ss_pred             CccccceeecCCCCeecCCCC-CCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          322 GLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       322 ~~~~~gl~~~~~g~i~vd~~l-~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      .....++..+..|.+.+|+.+ +|+.|++||.||+..+..+...|+.+|+.+|+.|.
T Consensus       391 ~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         391 LLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID  447 (457)
T ss_pred             cccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence            233336778888999999998 89999999999999988899999999999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.85  E-value=2.4e-19  Score=185.96  Aligned_cols=288  Identities=15%  Similarity=0.145  Sum_probs=166.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhh--hCCcccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFA--SHGVKFSSV  117 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~--~~g~~~~~~  117 (477)
                      .+.++|+||||||||++||.+|++.|++|+++|+....|+.....     +++ .....+.... ....  ..|+.....
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~-----~~i-~~~~~~~~~L~er~p~~~GG~~~yGI  454 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVH-----KPI-KFWHEYKNLLSERMPRGFGGVAEYGI  454 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccc-----ccc-chhhhhccchhhhccccCCcccccCc
Confidence            456899999999999999999999999999999865554421100     000 0001111111 1111  012221111


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHhh-hCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCC-CCCCCCCCc
Q 011787          118 EVDLPAMMAQKDKAVSNLTRGIEGLFK-KNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKSLPGIT  195 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~-~~~~~~g~~  195 (477)
                      .+.|.+      ..+    +.....+. ..++.++.+.....+     +..++  .....||+|+||||+ .|+.++..+
T Consensus       455 p~R~~k------~~l----~~i~~il~~g~~v~~~~gv~lG~d-----it~ed--l~~~gyDAV~IATGA~kpr~L~IPG  517 (1028)
T PRK06567        455 TVRWDK------NNL----DILRLILERNNNFKYYDGVALDFN-----ITKEQ--AFDLGFDHIAFCIGAGQPKVLDIEN  517 (1028)
T ss_pred             cccchH------HHH----HHHHHHHhcCCceEEECCeEECcc-----CCHHH--HhhcCCCEEEEeCCCCCCCCCCCCC
Confidence            222221      111    11112222 224555545331111     11111  124579999999999 465433222


Q ss_pred             cCCceEecchhhhccc--------------CCCCeeEEEcccHHHHHHHHHHHH--------------------------
Q 011787          196 IDEKRIVSSTGALALN--------------EVPKKLVVIGAGYIGLEMGSVWAR--------------------------  235 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~--------------~~~~~v~IiG~G~~g~e~a~~l~~--------------------------  235 (477)
                      .+...+++..+++...              ..+++|+|||||.+|+|+|.....                          
T Consensus       518 eda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia  597 (1028)
T PRK06567        518 FEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIA  597 (1028)
T ss_pred             ccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHH
Confidence            3456788777754321              135799999999999999983322                          


Q ss_pred             -------------------------cCCcEEEEEeCCCc-CCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeE
Q 011787          236 -------------------------LGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGV  288 (477)
Q Consensus       236 -------------------------~g~~Vtli~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~  288 (477)
                                               .| .|++++|+..- +|...- ..+++.+. .+.||.|+++....++..++ +.+
T Consensus       598 ~~f~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~-~~eEv~~A-~eEGV~f~~~~~P~~i~~d~~g~v  674 (1028)
T PRK06567        598 EEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKL-NHEELIYA-LALGVDFKENMQPLRINVDKYGHV  674 (1028)
T ss_pred             HHHHHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCC-CHHHHHHH-HHcCcEEEecCCcEEEEecCCCeE
Confidence                                     22 28888887754 443210 11233444 45699999999999997653 443


Q ss_pred             E-EEEeecC-----------C-C-------------ceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC
Q 011787          289 K-LTLEPAA-----------G-G-------------EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF  342 (477)
Q Consensus       289 ~-v~~~~~~-----------~-~-------------~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l  342 (477)
                      . +++....           . +             ...+++||.||+|+|..||+..+         ..      +..+
T Consensus       675 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~~------~~s~  739 (1028)
T PRK06567        675 ESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------ED------KYSY  739 (1028)
T ss_pred             EEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------cc------cccc
Confidence            3 4333111           1 1             34689999999999999999852         00      1112


Q ss_pred             CCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       343 ~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      -++.+++|+-        ....|+.+|+.++.+|.
T Consensus       740 ~~d~~~~f~G--------tvv~A~as~k~~~~~i~  766 (1028)
T PRK06567        740 FGDCNPKYSG--------SVVKALASSKEGYDAIN  766 (1028)
T ss_pred             ccCCCCcccc--------HHHHHHHHHHhHHHHHH
Confidence            2445666654        56789999999999994

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.1e-19  Score=183.90  Aligned_cols=281  Identities=22%  Similarity=0.306  Sum_probs=179.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+.++|.|||+|||||+||-+|.+.|+.|+++||.+++||...+  .+|..                            .
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y--gipnm----------------------------k 1832 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY--GIPNM----------------------------K 1832 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee--cCCcc----------------------------c
Confidence            35689999999999999999999999999999999999995332  13321                            1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-CCCCCCccCCc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-KSLPGITIDEK  199 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~~~~g~~~~~~  199 (477)
                      +.++          ..+.-.+++.+.|++|+.++...-     .+... +  ..-.+|.+|+|+|+.. +.+|..+.+..
T Consensus      1833 ldk~----------vv~rrv~ll~~egi~f~tn~eigk-----~vs~d-~--l~~~~daiv~a~gst~prdlpv~grd~k 1894 (2142)
T KOG0399|consen 1833 LDKF----------VVQRRVDLLEQEGIRFVTNTEIGK-----HVSLD-E--LKKENDAIVLATGSTTPRDLPVPGRDLK 1894 (2142)
T ss_pred             hhHH----------HHHHHHHHHHhhCceEEeeccccc-----cccHH-H--HhhccCeEEEEeCCCCCcCCCCCCcccc
Confidence            1111          112223566678999887653221     13221 1  3346899999999864 55554434444


Q ss_pred             eEecchhhh---------------cccCCCCeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCC---------cCCCCC
Q 011787          200 RIVSSTGAL---------------ALNEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAAD---------IVPSMD  254 (477)
Q Consensus       200 ~~~~~~~~~---------------~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~---------~~~~~~  254 (477)
                      .++-..+++               .+...+|+|+|||||.+|-++...-.++|.+ |.-++--+.         ++|.++
T Consensus      1895 gv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwp 1974 (2142)
T KOG0399|consen 1895 GVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWP 1974 (2142)
T ss_pred             ccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCc
Confidence            444333332               1233489999999999999998888888864 433332222         233332


Q ss_pred             HH-----HHHHHHHHHHhcCcEEEeC------------ceEEE-----E--EEcCCe-EE-EEEeecCCCceEEEEcCEE
Q 011787          255 GE-----IRKQFQRSLEKQKMKFMLK------------TKVVG-----V--DLSGDG-VK-LTLEPAAGGEKTILEADVV  308 (477)
Q Consensus       255 ~~-----~~~~~~~~l~~~gv~~~~~------------~~v~~-----i--~~~~~~-~~-v~~~~~~~~~~~~i~~D~v  308 (477)
                      .-     -.+++++.   .|-+..+-            ..|+.     +  +.++.+ .. .++    .++.+.++||+|
T Consensus      1975 rvfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei----~~see~~eadlv 2047 (2142)
T KOG0399|consen 1975 RVFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEI----NNSEEIIEADLV 2047 (2142)
T ss_pred             eEEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEc----CCcceeeeccee
Confidence            10     01111211   12211111            11111     1  112211 11 111    235678999999


Q ss_pred             EEeecCCCCCCCCCccccceeecCCCCeec-CCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPV-NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       309 i~a~G~~p~~~~l~~~~~gl~~~~~g~i~v-d~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      +++.|+....... .++.+++.++++.|.+ ++.+.|+++++||+|||-.+..+..+|.++|+.+|+.+-
T Consensus      2048 ~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2048 ILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred             eeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHH
Confidence            9999987654443 6788899998887775 455889999999999999999999999999999999874

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.83  E-value=2.1e-19  Score=155.85  Aligned_cols=265  Identities=20%  Similarity=0.231  Sum_probs=163.7

Q ss_pred             cEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +.+|||||+||.+||.+|+.+  ..+|+|+...+                +......|.....+++++.+...    +..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass----------------~vksvtn~~~i~~ylekfdv~eq----~~~   60 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS----------------FVKSVTNYQKIGQYLEKFDVKEQ----NCH   60 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH----------------HHHHHhhHHHHHHHHHhcCcccc----chh
Confidence            368999999999999999987  47899997632                22444455555555555554422    222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+.+.....+.           +         +...+..+..+.+.+|  ..+.|++|+++||++|...-+..  ...+.
T Consensus        61 elg~~f~~~~~-----------~---------v~~~~s~ehci~t~~g--~~~ky~kKOG~tg~kPklq~E~~--n~~Iv  116 (334)
T KOG2755|consen   61 ELGPDFRRFLN-----------D---------VVTWDSSEHCIHTQNG--EKLKYFKLCLCTGYKPKLQVEGI--NPKIV  116 (334)
T ss_pred             hhcccHHHHHH-----------h---------hhhhccccceEEecCC--ceeeEEEEEEecCCCcceeecCC--CceEE
Confidence            22222211111           1         1223556667788888  78999999999999995433211  22232


Q ss_pred             ---cchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcC------
Q 011787          203 ---SSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQK------  269 (477)
Q Consensus       203 ---~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~g------  269 (477)
                         ..+....+   ....|.|.|+|.|-+++|++..+.  +.+|+|....+.+.. .+|+.+.+.+...|+..+      
T Consensus       117 ~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~ia  194 (334)
T KOG2755|consen  117 GIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIA  194 (334)
T ss_pred             EEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhh
Confidence               22332222   234899999999999999998884  457898888877754 567766666554441110      


Q ss_pred             ------cEEEeCce-----------------------------------EEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 011787          270 ------MKFMLKTK-----------------------------------VVGVDLSGDGVKLTLEPAAGGEKTILEADVV  308 (477)
Q Consensus       270 ------v~~~~~~~-----------------------------------v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~v  308 (477)
                            ++.+.++.                                   +..+....+...++..+...+....+.||.+
T Consensus       195 iKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~i  274 (334)
T KOG2755|consen  195 IKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFI  274 (334)
T ss_pred             hhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEE
Confidence                  00000000                                   0000000000011111111223347789999


Q ss_pred             EEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       309 i~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      +.++|..||.+.  .-...+...++|++.||+.|+|+.|++||+||++.
T Consensus       275 vSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslpdvFa~gDvct  321 (334)
T KOG2755|consen  275 VSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT  321 (334)
T ss_pred             EeccccCcCceE--EecChhhhccccCeeehhhccccccceeeecceec
Confidence            999999999984  33334777888999999999999999999999875

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.82  E-value=8.7e-20  Score=163.31  Aligned_cols=187  Identities=35%  Similarity=0.493  Sum_probs=117.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHHH
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM  124 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  124 (477)
                      ||+|||||+||++||.+|++.+.+|+|+|+.+..   +....|++...+............ .                 
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------   59 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHRHEFLP-A-----------------   59 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHHHHHHH-H-----------------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccc---cccccccccccccccccccccccc-c-----------------
Confidence            7999999999999999999999999999874321   111222222221111111100000 0                 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCeEE-EEeEEEEecCCEE-------EE-EecCCceEEEEecEEEEccCCCCC--CCCC
Q 011787          125 MAQKDKAVSNLTRGIEGLFKKNKVTY-VKGYGKFISPSEV-------SV-DTIEGGNTVVKGKNIIIATGSDVK--SLPG  193 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-------~v-~~~~g~~~~i~~d~lvlAtG~~~~--~~~g  193 (477)
                              . + ..+.+.+...++++ +...+..++....       .+ ....+...++.||+||||||+.|.  .+|+
T Consensus        60 --------~-~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g  129 (201)
T PF07992_consen   60 --------R-L-FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG  129 (201)
T ss_dssp             --------H-H-GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred             --------c-c-cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence                    0 0 01112223446666 3334444432221       22 112334588999999999999874  5566


Q ss_pred             Cc--cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          194 IT--IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      .+  .....+.++.++......+++++|||                                                  
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG--------------------------------------------------  159 (201)
T PF07992_consen  130 EEVAYFLRGVDDAQRFLELLESPKRVAVVG--------------------------------------------------  159 (201)
T ss_dssp             TTTECBTTSEEHHHHHHTHSSTTSEEEEES--------------------------------------------------
T ss_pred             Cccccccccccccccccccccccccccccc--------------------------------------------------
Confidence            42  22245677777777766777999999                                                  


Q ss_pred             EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                                                                    ...+. +..+++++++|++.||+++||+.|||||
T Consensus       160 ----------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya  192 (201)
T PF07992_consen  160 ----------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYA  192 (201)
T ss_dssp             ----------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE
T ss_pred             ----------------------------------------------ccccc-cccccccccccccccccccccccccccc
Confidence                                                          33322 7788999999999999999999999999


Q ss_pred             ecccCCCC
Q 011787          352 IGDVIPGP  359 (477)
Q Consensus       352 ~GD~~~~~  359 (477)
                      +|||++.+
T Consensus       193 ~GD~a~~~  200 (201)
T PF07992_consen  193 AGDCAGIY  200 (201)
T ss_dssp             -GGGBEES
T ss_pred             cccccccC
Confidence            99998643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.82  E-value=4.3e-19  Score=169.65  Aligned_cols=267  Identities=21%  Similarity=0.295  Sum_probs=135.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCC---ceeeccCcc--C---chhhhhhhHHHHHHHhhhhhCCcc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG---GTCLNVGCI--P---SKALLHSSHMYHEAMHSFASHGVK  113 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~G---G~~~~~~~~--p---~~~l~~~~~~~~~~~~~~~~~g~~  113 (477)
                      .+|+++||.||++|+.|..|.+.+ .++..+|+.+.+.   |+.+....+  |   ....+..+.....+.+++...+..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            489999999999999999999885 8999999876542   222111100  0   000000000001111111111110


Q ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC------CEEEEEe--cCCceEEEEecEEEEcc
Q 011787          114 FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP------SEVSVDT--IEGGNTVVKGKNIIIAT  184 (477)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~------~~~~v~~--~~g~~~~i~~d~lvlAt  184 (477)
                      ..-  ++.... .........+++|..   ++..-.+..+ ++..+..      ..+.|.+  .+|....+.+++|||||
T Consensus        82 ~~f--~~~~~~-~p~R~ef~dYl~Wva---~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~  155 (341)
T PF13434_consen   82 YEF--YNRGYF-FPSRREFNDYLRWVA---EQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT  155 (341)
T ss_dssp             HHH--HHH--S-S-BHHHHHHHHHHHH---CCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred             hhh--hhcCCC-CCCHHHHHHHHHHHH---HhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence            000  000000 001111222333333   3333212222 3444322      1356665  34556899999999999


Q ss_pred             CCCCCCCCCCc-cC-CceEecchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCCC----
Q 011787          185 GSDVKSLPGIT-ID-EKRIVSSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSM----  253 (477)
Q Consensus       185 G~~~~~~~g~~-~~-~~~~~~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~----  253 (477)
                      |..|..|+... .. ...++++.+....   ...+++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+..    
T Consensus       156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f  235 (341)
T PF13434_consen  156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF  235 (341)
T ss_dssp             --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred             CCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence            98886555444 22 2556665554433   3457999999999999999999988875  899999998775422    


Q ss_pred             -----CHH-------------------------------HHHHHHH-----HH-HhcCcEEEeCceEEEEEEcC-CeEEE
Q 011787          254 -----DGE-------------------------------IRKQFQR-----SL-EKQKMKFMLKTKVVGVDLSG-DGVKL  290 (477)
Q Consensus       254 -----~~~-------------------------------~~~~~~~-----~l-~~~gv~~~~~~~v~~i~~~~-~~~~v  290 (477)
                           +|+                               +.+.+.+     .+ .+..+.++.+++|++++..+ +++.+
T Consensus       236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l  315 (341)
T PF13434_consen  236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL  315 (341)
T ss_dssp             HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred             hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence                 221                               1111111     11 23357899999999998887 58999


Q ss_pred             EEeecCCCceEEEEcCEEEEeecCC
Q 011787          291 TLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       291 ~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ++.+...+...++++|.||+|||++
T Consensus       316 ~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  316 TLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             EEEETTT--EEEEEESEEEE---EE
T ss_pred             EEEECCCCCeEEEecCEEEEcCCcc
Confidence            9998778888899999999999974

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.81  E-value=7.8e-19  Score=157.40  Aligned_cols=189  Identities=18%  Similarity=0.258  Sum_probs=103.3

Q ss_pred             EEECCChHHHHHHHHHHHCCCe-EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHHHH
Q 011787           47 VVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMM  125 (477)
Q Consensus        47 vIIGgG~AGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  125 (477)
                      +|||||||||++|.+|.+.|.+ ++|+|+++.+||.|......+...  .... +.      ...+++ .-..+......
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~--~~~~-~~------~~~~~~-~~~~~~~~~~~   70 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLH--SPSF-FS------SDFGLP-DFESFSFDDSP   70 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-B--SSSC-CT------GGSS---CCCHSCHHHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccc--cCcc-cc------ccccCC-cccccccccCC
Confidence            6999999999999999999999 999999999999987533111100  0000 00      000000 00000000000


Q ss_pred             HHH----HHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEecCCceEEEEecEEEEccCC--CCCCCCCCcc
Q 011787          126 AQK----DKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITI  196 (477)
Q Consensus       126 ~~~----~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~--~~~~~~g~~~  196 (477)
                      .+.    ......+.+++..+.++.++++..+ .+..+  +.+.+.|.+.++  +++++|+||+|||.  .|. +|.++.
T Consensus        71 ~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~p~-~p~~~g  147 (203)
T PF13738_consen   71 EWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSHPR-IPDIPG  147 (203)
T ss_dssp             HHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCSB----S-TT
T ss_pred             CCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCCCC-cccccc
Confidence            000    0011223344555566666665443 23332  244488888887  78999999999996  443 222222


Q ss_pred             -CCceEecchhhhcc-cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          197 -DEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       197 -~~~~~~~~~~~~~~-~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                       .....+++.+.... ...+++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus       148 ~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  148 SAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             GGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             ccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence             12244555444433 33479999999999999999999999999999999874

...

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.80  E-value=8.4e-19  Score=173.86  Aligned_cols=198  Identities=20%  Similarity=0.303  Sum_probs=123.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCe-EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccc
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV  117 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~  117 (477)
                      +.+.++||+|||||++|+++|++|++.|.. ++|+||++.+||+|.+. +.|+..+......+     .+....+..   
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-ry~~l~~~~p~~~~-----~~~~~p~~~---   74 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-RYPGLRLDSPKWLL-----GFPFLPFRW---   74 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-cCCceEECCchhee-----ccCCCccCC---
Confidence            345679999999999999999999999988 99999999999997552 23332221111111     011111110   


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe--EEEEe-cCCEEEEEecCCceEEEEecEEEEccCC--CC--CC
Q 011787          118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG--YGKFI-SPSEVSVDTIEGGNTVVKGKNIIIATGS--DV--KS  190 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~~~~v~~~~g~~~~i~~d~lvlAtG~--~~--~~  190 (477)
                      ...+...    ......+..+++.+-.+..+.+...  .+.+. +...++|.++++...++.+|.||+|||-  .|  +.
T Consensus        75 ~~~~~~~----~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~  150 (443)
T COG2072          75 DEAFAPF----AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD  150 (443)
T ss_pred             cccCCCc----ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC
Confidence            0011111    1111111122222222223333322  12222 2346888887774434789999999995  34  34


Q ss_pred             CCCCc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          191 LPGIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       191 ~~g~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ++|.+ +.+..+++.+........+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus       151 ~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         151 FAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            55554 344445555544455566999999999999999999999999999999998865

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.79  E-value=7.9e-17  Score=149.57  Aligned_cols=331  Identities=19%  Similarity=0.274  Sum_probs=197.8

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCC---CceeeccCc--cC-chhhh--hhhHHHHHHHhhhhh
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGAL---GGTCLNVGC--IP-SKALL--HSSHMYHEAMHSFAS  109 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~---GG~~~~~~~--~p-~~~l~--~~~~~~~~~~~~~~~  109 (477)
                      +|+..+|++.||-||+-|+.|+.|...+ .+...+||.+.+   .|+.+-...  +| -+.+.  ..+.....+.+++.+
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~   80 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE   80 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence            3567799999999999999999999874 889999997754   243322111  11 01111  111112222333333


Q ss_pred             CCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEE---EecCCE---EEEEecCCceEEEEecEEEEc
Q 011787          110 HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK---FISPSE---VSVDTIEGGNTVVKGKNIIIA  183 (477)
Q Consensus       110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~---~~v~~~~g~~~~i~~d~lvlA  183 (477)
                      .+-.+.  ..++..+... +.....++.|....+..  +++ ...+.   .++.+.   ..+.+.++  ..++++.|||+
T Consensus        81 h~RLy~--Fl~~e~f~i~-R~Ey~dY~~Waa~~l~~--~rf-g~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~lVlg  152 (436)
T COG3486          81 HGRLYE--FLNYETFHIP-RREYNDYCQWAASQLPS--LRF-GEEVTDISSLDGDAVVRLFVVTANG--TVYRARNLVLG  152 (436)
T ss_pred             cchHhh--hhhhhccccc-HHHHHHHHHHHHhhCCc--ccc-CCeeccccccCCcceeEEEEEcCCC--cEEEeeeEEEc
Confidence            221111  0111111111 11122233333333311  111 11222   333322   23555555  58999999999


Q ss_pred             cCCCCCCCCCCc-cCCceEecchhhhc-ccC-C-CCeeEEEcccHHHHHHHHHHHHc----CCcEEEEEeCCCcCCC---
Q 011787          184 TGSDVKSLPGIT-IDEKRIVSSTGALA-LNE-V-PKKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIVPS---  252 (477)
Q Consensus       184 tG~~~~~~~g~~-~~~~~~~~~~~~~~-~~~-~-~~~v~IiG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~~~---  252 (477)
                      +|.+|..||... .....++++.++.. ..+ . .++|.|||+|.+|.|+-..|...    ..++.|+.|+..+.|.   
T Consensus       153 ~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~S  232 (436)
T COG3486         153 VGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS  232 (436)
T ss_pred             cCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccc
Confidence            999998776544 33445665555543 222 2 34499999999999998887643    3458899999887652   


Q ss_pred             ------CCHHHHH------------------------------HHHH-----HHH--hcCcEEEeCceEEEEEEcCCe-E
Q 011787          253 ------MDGEIRK------------------------------QFQR-----SLE--KQKMKFMLKTKVVGVDLSGDG-V  288 (477)
Q Consensus       253 ------~~~~~~~------------------------------~~~~-----~l~--~~gv~~~~~~~v~~i~~~~~~-~  288 (477)
                            |.|+..+                              .+-+     .+.  +..+.++.+++|..++..+++ +
T Consensus       233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~  312 (436)
T COG3486         233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY  312 (436)
T ss_pred             hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE
Confidence                  2221111                              1111     111  246889999999999988766 7


Q ss_pred             EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCcccc--ceeecCCCCeecCCCCC--C--C-CCCeEEecccC-----
Q 011787          289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI--GVETDKMGRIPVNERFA--T--N-IPGVYAIGDVI-----  356 (477)
Q Consensus       289 ~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~--gl~~~~~g~i~vd~~l~--t--~-~~~vya~GD~~-----  356 (477)
                      .+.+....+++..++++|.||+|||++...+.+ ++.+  .+..+++|...|++.++  .  + .-.||+.|-+.     
T Consensus       313 ~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi  391 (436)
T COG3486         313 RLTLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI  391 (436)
T ss_pred             EEEEeeccCCCceEEEeeEEEEecccccCCchh-hhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc
Confidence            888888778888999999999999999665533 3332  26678889999998764  2  1 23699999776     


Q ss_pred             CCCCchhHHHHHHHHHHHHHcCC
Q 011787          357 PGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       357 ~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      +.|.+.-.|.+.+.++ +.+++.
T Consensus       392 g~pdLsl~a~Raa~I~-~~L~g~  413 (436)
T COG3486         392 GAPDLSLGAWRAAVIL-NSLLGR  413 (436)
T ss_pred             CCccchHHHHHHHHHH-HHHhCc
Confidence            3466666777666554 444454

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.78  E-value=4.8e-17  Score=158.99  Aligned_cols=157  Identities=22%  Similarity=0.271  Sum_probs=118.5

Q ss_pred             eEEEcccHHHHHHH-HHHH----HcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEE
Q 011787          217 LVVIGAGYIGLEMG-SVWA----RLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT  291 (477)
Q Consensus       217 v~IiG~G~~g~e~a-~~l~----~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~  291 (477)
                      =.|++.+.+|+|.+ ..+.    +.|.+|+++...+..++..  ++.+.+.+.+++.|+++++++.|.+++.+++++...
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v  295 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV  295 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence            47789999999998 6664    5799999998888877653  688889999999999999999999998777666543


Q ss_pred             EeecCCCceEEEEcCEEEEeecCCCCCCCC---------------------------------CccccceeecCCCCeec
Q 011787          292 LEPAAGGEKTILEADVVLVSAGRTPFTAGL---------------------------------GLDKIGVETDKMGRIPV  338 (477)
Q Consensus       292 ~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l---------------------------------~~~~~gl~~~~~g~i~v  338 (477)
                      ..  .++....+++|.+|+|+|+.+.....                                 ++.+.|+.+|+. ...+
T Consensus       296 ~~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~  372 (422)
T PRK05329        296 WT--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPL  372 (422)
T ss_pred             Ee--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcc
Confidence            32  22344679999999999987554320                                 123445555543 4445


Q ss_pred             CCCCCCCCCCeEEecccCCCCCch------hHHHHHHHHHHHHHcC
Q 011787          339 NERFATNIPGVYAIGDVIPGPMLA------HKAEEDGVACVEFLAG  378 (477)
Q Consensus       339 d~~l~t~~~~vya~GD~~~~~~~~------~~A~~~g~~aa~~i~~  378 (477)
                      |...++..+||||+|++.+++..+      -.|...|-.||++|..
T Consensus       373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        373 DSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE  418 (422)
T ss_pred             cCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence            666667799999999999887644      4678888888888864

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.77  E-value=1.1e-16  Score=155.84  Aligned_cols=282  Identities=16%  Similarity=0.195  Sum_probs=162.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHH-HCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~-~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      +...+|+||||||||++||.+|. +.|++|+|+|+.+.+||... .+..|...                           
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR-~GVaPdh~---------------------------   88 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR-YGVAPDHI---------------------------   88 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE-EeCCCCCc---------------------------
Confidence            34578999999999999999865 56999999999999999754 33333210                           


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCC-------
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP-------  192 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~-------  192 (477)
                      .           .+.+...+...+...++++. +.+.. ..   .+..++   ..-.||.||+|||+.+..+|       
T Consensus        89 ~-----------~k~v~~~f~~~~~~~~v~f~-gnv~V-G~---Dvt~ee---L~~~YDAVIlAtGA~~l~ipi~~~~~~  149 (506)
T PTZ00188         89 H-----------VKNTYKTFDPVFLSPNYRFF-GNVHV-GV---DLKMEE---LRNHYNCVIFCCGASEVSIPIGQQDED  149 (506)
T ss_pred             c-----------HHHHHHHHHHHHhhCCeEEE-eeeEe-cC---ccCHHH---HHhcCCEEEEEcCCCCCCCCcccccce
Confidence            0           01112222233444566665 22111 10   111111   22379999999999987666       


Q ss_pred             -----CCccC--CceEecchhhhcc-------------c------CCCCeeEEEcccHHHHHHHHHHH------------
Q 011787          193 -----GITID--EKRIVSSTGALAL-------------N------EVPKKLVVIGAGYIGLEMGSVWA------------  234 (477)
Q Consensus       193 -----g~~~~--~~~~~~~~~~~~~-------------~------~~~~~v~IiG~G~~g~e~a~~l~------------  234 (477)
                           +.+..  ...+++..++..+             .      ...++++|||+|..++++|..|.            
T Consensus       150 ~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~  229 (506)
T PTZ00188        150 KAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDIS  229 (506)
T ss_pred             eeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCc
Confidence                 43211  1233333332111             0      12478999999999999998742            


Q ss_pred             --------HcCC-cEEEEEeCCCcCCCCC-------------------HH-----------------------HHHHHHH
Q 011787          235 --------RLGS-EVTVVEFAADIVPSMD-------------------GE-----------------------IRKQFQR  263 (477)
Q Consensus       235 --------~~g~-~Vtli~~~~~~~~~~~-------------------~~-----------------------~~~~~~~  263 (477)
                              +.+. +|+++.|+...-..|.                   ++                       ..+.+.+
T Consensus       230 ~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~  309 (506)
T PTZ00188        230 SDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKN  309 (506)
T ss_pred             HHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHH
Confidence                    3233 5888888764321110                   11                       1112222


Q ss_pred             HHH----------hcCcEEEeCceEEEEEEcCCeEE-EEEee--------cCCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787          264 SLE----------KQKMKFMLKTKVVGVDLSGDGVK-LTLEP--------AAGGEKTILEADVVLVSAGRTPFTAGLGLD  324 (477)
Q Consensus       264 ~l~----------~~gv~~~~~~~v~~i~~~~~~~~-v~~~~--------~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~  324 (477)
                      ...          .+-+.+++.....+|...++.+. ++++.        ..+++.+.++||+|+-++|++...-    .
T Consensus       310 ~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~----~  385 (506)
T PTZ00188        310 YEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF----A  385 (506)
T ss_pred             HHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----C
Confidence            221          13466777777888875333332 44432        1245567899999999999997642    2


Q ss_pred             ccceeecCCCCeecCCCCC--CCCCCeEEecccCCCCCc-hhHHHHHHHHHHHHHcC
Q 011787          325 KIGVETDKMGRIPVNERFA--TNIPGVYAIGDVIPGPML-AHKAEEDGVACVEFLAG  378 (477)
Q Consensus       325 ~~gl~~~~~g~i~vd~~l~--t~~~~vya~GD~~~~~~~-~~~A~~~g~~aa~~i~~  378 (477)
                        |+++|. . +... ..+  +..|++|++|.+-.+|.- ...-+.++...+..|+.
T Consensus       386 --g~pFd~-~-~~n~-~grv~~~~~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~  437 (506)
T PTZ00188        386 --ENLYNQ-S-VQMF-KEDIGQHKFAIFKAGWFDKGPKGNIASQILNSKNSTHLVLN  437 (506)
T ss_pred             --CCCccc-c-CCCC-CCcccCCCCCcEEeeecCcCCCceeccCcccHHHHHHHHHH
Confidence              345552 2 2222 111  237999999999987762 22233445555555543

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.75  E-value=1.1e-16  Score=150.67  Aligned_cols=203  Identities=18%  Similarity=0.244  Sum_probs=129.5

Q ss_pred             CCceEEEEecEEEEccCCCCCCCCC---Cc-cCCceEecchhhhccc----------------CCCCeeEEE---cccH-
Q 011787          169 EGGNTVVKGKNIIIATGSDVKSLPG---IT-IDEKRIVSSTGALALN----------------EVPKKLVVI---GAGY-  224 (477)
Q Consensus       169 ~g~~~~i~~d~lvlAtG~~~~~~~g---~~-~~~~~~~~~~~~~~~~----------------~~~~~v~Ii---G~G~-  224 (477)
                      +++..++..-.+|+|||-.+.....   ++ .....++|..++.++.                +.||+|+.|   |+-. 
T Consensus       293 ~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~  372 (622)
T COG1148         293 EPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDF  372 (622)
T ss_pred             CCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCc
Confidence            3455678899999999988753321   11 1223566655555432                237888877   5443 


Q ss_pred             -------------HHHHHHHHHHHc--CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeE
Q 011787          225 -------------IGLEMGSVWARL--GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGV  288 (477)
Q Consensus       225 -------------~g~e~a~~l~~~--g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~  288 (477)
                                   .++-.|+.++++  ..+|++++..-+-..   ....+.+.+.-++.||.++.+ ++.+|... ++.+
T Consensus       373 ~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG---~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l  448 (622)
T COG1148         373 QVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG---KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL  448 (622)
T ss_pred             ccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC---ccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee
Confidence                         122223333333  357887776544332   223333344445779999865 45555444 4456


Q ss_pred             EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-ccccceeecCCCCeecC-CCCC---CCCCCeEEecccCCCCCchh
Q 011787          289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-LDKIGVETDKMGRIPVN-ERFA---TNIPGVYAIGDVIPGPMLAH  363 (477)
Q Consensus       289 ~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~-~~~~gl~~~~~g~i~vd-~~l~---t~~~~vya~GD~~~~~~~~~  363 (477)
                      .+..++...+...++++|+|++++|..|....-. ...+||..+++|++... +.++   |+.+|||.+|-+. +|.-..
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aq-gPkdI~  527 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQ-GPKDIA  527 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeeccc-CCccHH
Confidence            7777777777788999999999999999654211 34568999999998865 5554   7899999999664 677677


Q ss_pred             HHHHHHHHHHHHH
Q 011787          364 KAEEDGVACVEFL  376 (477)
Q Consensus       364 ~A~~~g~~aa~~i  376 (477)
                      .+..||..||...
T Consensus       528 ~siaqa~aAA~kA  540 (622)
T COG1148         528 DSIAQAKAAAAKA  540 (622)
T ss_pred             HHHHHhHHHHHHH
Confidence            7777776665443

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=1.2e-16  Score=155.93  Aligned_cols=305  Identities=17%  Similarity=0.219  Sum_probs=163.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc-
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV-  119 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~-  119 (477)
                      +...+|+|||||||||.+|+.|.+.|++++++||.+.+||.|.+......    ..+..|..+...+...-..+.+.++ 
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~----~~ss~Y~~l~tn~pKe~~~~~dfpf~   79 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEV----VHSSVYKSLRTNLPKEMMGYSDFPFP   79 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccc----cccchhhhhhccCChhhhcCCCCCCc
Confidence            34579999999999999999999999999999999999999987643220    0011122222111111111111111 


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHhhhCC----eEEEEeE--EEEecCCEEEEEecCCc--eEEEEecEEEEccCCC--C
Q 011787          120 -DLPAMMAQKDKAVSNLTRGIEGLFKKNK----VTYVKGY--GKFISPSEVSVDTIEGG--NTVVKGKNIIIATGSD--V  188 (477)
Q Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~--~~~~~~~~~~v~~~~g~--~~~i~~d~lvlAtG~~--~  188 (477)
                       +.+..++...+    +.+++..+.+..+    +++-...  +...+++.+.|...+..  ....-||.|++|||-.  |
T Consensus        80 ~~~~~~~p~~~e----~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P  155 (448)
T KOG1399|consen   80 ERDPRYFPSHRE----VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEP  155 (448)
T ss_pred             ccCcccCCCHHH----HHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCC
Confidence             11122222222    2222333333333    3332222  22233246777665543  3578899999999977  4


Q ss_pred             C--CCCCC--c-cCCceEecchhhh-cccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHH
Q 011787          189 K--SLPGI--T-IDEKRIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQ  262 (477)
Q Consensus       189 ~--~~~g~--~-~~~~~~~~~~~~~-~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~  262 (477)
                      .  .+|+.  + ..+ .++++.+.. .-....|+|+|||.|.+|+|++..+++...+|++..+ ..........      
T Consensus       156 ~~P~~~g~~~~~f~G-~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~~~------  227 (448)
T KOG1399|consen  156 RIPQIPGPGIESFKG-KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEPPE------  227 (448)
T ss_pred             CCCcCCCCchhhcCC-cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccccc------
Confidence            2  33442  2 333 344444433 3334579999999999999999999999888888765 2000000000      


Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc--eeecCCCCeecCC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG--VETDKMGRIPVNE  340 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~g~i~vd~  340 (477)
                       . ...++..+ . .+..+  .+.+..+.      .++....+|.+|+|||+.=...++  +..+  ...++....    
T Consensus       228 -~-~~~~~~~~-~-~i~~~--~e~~~~~~------~~~~~~~~D~ii~ctgy~y~fPfl--~~~~~~~~~~~~~~p----  289 (448)
T KOG1399|consen  228 -I-LGENLWQV-P-SIKSF--TEDGSVFE------KGGPVERVDRIIFCTGYKYKFPFL--ETLGLGTVRDNIVGP----  289 (448)
T ss_pred             -e-eecceEEc-c-ccccc--cCcceEEE------cCceeEEeeeEEEeeeeEeeccee--ccCCceeeccCcccc----
Confidence             0 01122222 1 13333  22222222      155688899999999988766653  2221  111111000    


Q ss_pred             CCCCCCCCeEEec-ccCCCC---CchhHHHHHHHHHHHHHcCC
Q 011787          341 RFATNIPGVYAIG-DVIPGP---MLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       341 ~l~t~~~~vya~G-D~~~~~---~~~~~A~~~g~~aa~~i~~~  379 (477)
                      -...-.|..++-| ..+..+   ...+....|++.+++-+.|.
T Consensus       290 l~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~  332 (448)
T KOG1399|consen  290 LYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR  332 (448)
T ss_pred             hheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCC
Confidence            0112234444444 222221   12345677888888888765

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.74  E-value=4.5e-18  Score=151.70  Aligned_cols=291  Identities=16%  Similarity=0.219  Sum_probs=170.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC-C-CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQL-G-LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~-g-~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      ..+++|+|||||.+|++.|..+.+. + -+|.|||+.+.--       --|...+.......      +....-      
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy-------YQPgfTLvGgGl~~------l~~srr------   97 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY-------YQPGFTLVGGGLKS------LDSSRR------   97 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcc-------cCcceEEeccchhh------hhhccC------
Confidence            3579999999999999999999876 4 5799999854210       00111111100000      000000      


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCc-
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT-  195 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~-  195 (477)
                       ....+++                   .+.+.++..+...+++.-+|.+.+|  ++|+||++|||+|-+-.  .++|+. 
T Consensus        98 -~~a~liP-------------------~~a~wi~ekv~~f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl~E  155 (446)
T KOG3851|consen   98 -KQASLIP-------------------KGATWIKEKVKEFNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGLVE  155 (446)
T ss_pred             -ccccccc-------------------CCcHHHHHHHHhcCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcChHh
Confidence             0000000                   0111122223345677778888888  89999999999998753  466543 


Q ss_pred             -cCCceEec---chhh-------hcccC------CC-CeeEEEcccHHHHHHHHH-HHHcCC--cEEEEEeCCCcCCCCC
Q 011787          196 -IDEKRIVS---STGA-------LALNE------VP-KKLVVIGAGYIGLEMGSV-WARLGS--EVTVVEFAADIVPSMD  254 (477)
Q Consensus       196 -~~~~~~~~---~~~~-------~~~~~------~~-~~v~IiG~G~~g~e~a~~-l~~~g~--~Vtli~~~~~~~~~~~  254 (477)
                       .+...+.+   ....       .+.++      .| ..+--.|+-.-.+-++.. +++.|.  ++.++......--.--
T Consensus       156 al~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgV  235 (446)
T KOG3851|consen  156 ALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGV  235 (446)
T ss_pred             hccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecH
Confidence             22223322   1111       11111      11 223334665555555544 566665  4556554432111113


Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG  334 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g  334 (477)
                      +...+.+++..++++|++.....+.++..++.....+.-+ +.|..++++++++-+....++...   +.+.. -.|..|
T Consensus       236 k~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~-kPG~t~ei~yslLHv~Ppms~pe~---l~~s~-~adktG  310 (446)
T KOG3851|consen  236 KHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD-KPGVTEEIEYSLLHVTPPMSTPEV---LANSD-LADKTG  310 (446)
T ss_pred             HHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC-CCCceeEEeeeeeeccCCCCChhh---hhcCc-ccCccc
Confidence            5677888999999999999999999997665443332211 336667899998887665554332   34443 346779


Q ss_pred             CeecCCC-CC-CCCCCeEEecccCCCCCchh--HHHHHHHHHHHHHc
Q 011787          335 RIPVNER-FA-TNIPGVYAIGDVIPGPMLAH--KAEEDGVACVEFLA  377 (477)
Q Consensus       335 ~i~vd~~-l~-t~~~~vya~GD~~~~~~~~~--~A~~~g~~aa~~i~  377 (477)
                      ++.||.. +| +..||||++|||.+.|..-.  .+..|...+-+|+.
T Consensus       311 fvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  311 FVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             ceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence            9999975 77 78999999999999887433  33445566667764

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=99.74  E-value=1.5e-17  Score=132.64  Aligned_cols=86  Identities=48%  Similarity=0.805  Sum_probs=81.4

Q ss_pred             CceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHH
Q 011787          388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAA  467 (477)
Q Consensus       388 ~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~  467 (477)
                      +|+++|++|+++++|+||++|++.++++++...++....++...+++++++|+++|++|++|||+|++|++++|+||.++
T Consensus         1 vP~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~   80 (110)
T PF02852_consen    1 VPTVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELA   80 (110)
T ss_dssp             CEEEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHH
T ss_pred             CCEEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHH
Confidence            58999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHhcCC
Q 011787          468 MATHDK  473 (477)
Q Consensus       468 ~~~~~~  473 (477)
                      ++|.++
T Consensus        81 ~ai~~~   86 (110)
T PF02852_consen   81 LAIQNG   86 (110)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            999854

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.69  E-value=1.1e-15  Score=139.94  Aligned_cols=284  Identities=18%  Similarity=0.264  Sum_probs=164.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      +...+|+|||+||||+.+|.+|.+.  +.+|.|+|+.+.+.|. .++|..|..+...                       
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAPDHpEvK-----------------------   73 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAPDHPEVK-----------------------   73 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce-eeeccCCCCcchh-----------------------
Confidence            3456899999999999999999884  6899999999888885 3344444221100                       


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC---CCCCCc
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGIT  195 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~---~~~g~~  195 (477)
                                     +....+...++.....++-+--..     ..+.+.   +.+-.||.+|||.|+...   .+||.+
T Consensus        74 ---------------nvintFt~~aE~~rfsf~gNv~vG-----~dvsl~---eL~~~ydavvLaYGa~~dR~L~IPGe~  130 (468)
T KOG1800|consen   74 ---------------NVINTFTKTAEHERFSFFGNVKVG-----RDVSLK---ELTDNYDAVVLAYGADGDRRLDIPGEE  130 (468)
T ss_pred             ---------------hHHHHHHHHhhccceEEEecceec-----ccccHH---HHhhcccEEEEEecCCCCcccCCCCcc
Confidence                           000001112222233333221000     011211   134579999999998762   567654


Q ss_pred             cCCceEecchhhhccc------------CCCCeeEEEcccHHHHHHHHHHHHc---------------------C-CcEE
Q 011787          196 IDEKRIVSSTGALALN------------EVPKKLVVIGAGYIGLEMGSVWARL---------------------G-SEVT  241 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~------------~~~~~v~IiG~G~~g~e~a~~l~~~---------------------g-~~Vt  241 (477)
                        ...+++.+.+..+.            ....+++|||.|..++++|..|..-                     . .+|+
T Consensus       131 --l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~  208 (468)
T KOG1800|consen  131 --LSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVK  208 (468)
T ss_pred             --cccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEE
Confidence              45577766654432            2268999999999999999886422                     1 2688


Q ss_pred             EEEeCCCcCCCCC--------------------------------------HHHHHHHHHHHHhc---------CcE---
Q 011787          242 VVEFAADIVPSMD--------------------------------------GEIRKQFQRSLEKQ---------KMK---  271 (477)
Q Consensus       242 li~~~~~~~~~~~--------------------------------------~~~~~~~~~~l~~~---------gv~---  271 (477)
                      ++.|+......|-                                      +.+.+.+.+.+.++         +..   
T Consensus       209 lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~  288 (468)
T KOG1800|consen  209 LVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWH  288 (468)
T ss_pred             EEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhH
Confidence            8888765321110                                      12333333333321         111   


Q ss_pred             EEeCceEEEEEEcCCe---EEE--E-Ee---ecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC
Q 011787          272 FMLKTKVVGVDLSGDG---VKL--T-LE---PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF  342 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~---~~v--~-~~---~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l  342 (477)
                      +.+.....+|..++++   +.+  + ++   ...+++.++++|++++.++|+....-.     .|+.+|.+.++.-|...
T Consensus       289 ~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv~n~~G  363 (468)
T KOG1800|consen  289 LRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVVPNVNG  363 (468)
T ss_pred             HHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcccCCCc
Confidence            1111122233333222   111  1 11   223566789999999999998865421     14555544444444433


Q ss_pred             CC----CCCCeEEecccCCCCC-chhHHHHHHHHHHHHHcC
Q 011787          343 AT----NIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       343 ~t----~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~~  378 (477)
                      +.    -.|++|++|-|..+|. ....+++++..+|+.|..
T Consensus       364 rV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~q  404 (468)
T KOG1800|consen  364 RVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQ  404 (468)
T ss_pred             eEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHH
Confidence            32    3599999999998776 556688889888888863

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.67  E-value=1.1e-13  Score=132.66  Aligned_cols=331  Identities=16%  Similarity=0.214  Sum_probs=183.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCc-------cCchhhhhh-hHHHHHHHhhhhhCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGC-------IPSKALLHS-SHMYHEAMHSFASHG  111 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~-------~p~~~l~~~-~~~~~~~~~~~~~~g  111 (477)
                      +++|+|||||++|+..|.+|.+.   ...|.|+|+...+|+=..+...       +|+..+.-. +....++..++...+
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            37899999999999999999987   2339999999988843333322       333332222 222334444444431


Q ss_pred             cccccc--ccChHHHHHHHHHHHHHHHHHHHHHhhhCC---eEEEEeEEEEecC----CEEEEEecCCceEEEEecEEEE
Q 011787          112 VKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKNK---VTYVKGYGKFISP----SEVSVDTIEGGNTVVKGKNIII  182 (477)
Q Consensus       112 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~----~~~~v~~~~g~~~~i~~d~lvl  182 (477)
                      ....+.  ...+..++....-+.+.+.+.+..++++..   +.+++..+..+..    ....+...+|  ....+|-+|+
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--~~~~ad~~Vl  158 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--PSEIADIIVL  158 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--CeeeeeEEEE
Confidence            111100  001111111111112222333333444433   7777776554332    3456667777  7789999999


Q ss_pred             ccCCCCCCCCCCc--c--CCceEecchhhhcc--cCCCCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCC--
Q 011787          183 ATGSDVKSLPGIT--I--DEKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPS--  252 (477)
Q Consensus       183 AtG~~~~~~~g~~--~--~~~~~~~~~~~~~~--~~~~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~--  252 (477)
                      |||..++..+...  .  ....+-+......+  .+...+|+|+|+|.+.++....+++.|.  +||.++|+... |.  
T Consensus       159 atgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl~-~~~h  237 (474)
T COG4529         159 ATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGLV-PRPH  237 (474)
T ss_pred             eccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccccc-cCCC
Confidence            9998765443311  1  11122222222222  2234569999999999999999999886  69999998732 21  


Q ss_pred             -----CC-------------------------------------------------------------------------
Q 011787          253 -----MD-------------------------------------------------------------------------  254 (477)
Q Consensus       253 -----~~-------------------------------------------------------------------------  254 (477)
                           .+                                                                         
T Consensus       238 ~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R  317 (474)
T COG4529         238 IPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFR  317 (474)
T ss_pred             CCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhh
Confidence                 00                                                                         


Q ss_pred             --HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC------cccc
Q 011787          255 --GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG------LDKI  326 (477)
Q Consensus       255 --~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~------~~~~  326 (477)
                        +++...+.+.+. .|.--+.-.++..|...+.+..+.+........+.+++|.||.|+|..+....-.      +.+.
T Consensus       318 ~a~~v~~~~~~~~a-~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~  396 (474)
T COG4529         318 LAPAVQAAVPQLLA-EGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGEN  396 (474)
T ss_pred             hhHHHHhhhhHHhh-cchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhC
Confidence              011111111111 2322233445666666666655666544444567899999999999776543210      1122


Q ss_pred             ceee-c-CCCCeecCCCCC------CCCCCeEEecccCCCCC----chhHHHHHHHHHHHHHc
Q 011787          327 GVET-D-KMGRIPVNERFA------TNIPGVYAIGDVIPGPM----LAHKAEEDGVACVEFLA  377 (477)
Q Consensus       327 gl~~-~-~~g~i~vd~~l~------t~~~~vya~GD~~~~~~----~~~~A~~~g~~aa~~i~  377 (477)
                      |+.. + ...++.|++..+      +..+++||+|..+.+-.    ..+.-..|+..+|..++
T Consensus       397 Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         397 GLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             CccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence            3322 1 134567776654      45789999999985431    23344556656666655

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.48  E-value=7.8e-13  Score=98.79  Aligned_cols=78  Identities=38%  Similarity=0.681  Sum_probs=73.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEe
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE  293 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~  293 (477)
                      +++|||||++|+|+|..|++.|.+|+++++++.+++.+++++.+.+++.++++||++++++.+++++.+++++.++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~   78 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE   78 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            589999999999999999999999999999999999999999999999999999999999999999998877666664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.41  E-value=9.9e-12  Score=116.32  Aligned_cols=58  Identities=17%  Similarity=0.333  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec--CCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG--RTPF  317 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G--~~p~  317 (477)
                      .++.+.+...+++.||+++++++|.+++.++....+.+.     +++++.||.+|+|+|  ..|.
T Consensus       111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~-----~g~~i~~d~lilAtGG~S~P~  170 (408)
T COG2081         111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS-----SGETVKCDSLILATGGKSWPK  170 (408)
T ss_pred             HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC-----CCCEEEccEEEEecCCcCCCC
Confidence            467788889999999999999999999988877777765     556899999999999  4453

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.41  E-value=1.6e-12  Score=130.89  Aligned_cols=144  Identities=22%  Similarity=0.294  Sum_probs=81.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccC-------c--hhh----------------hhhh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP-------S--KAL----------------LHSS   97 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p-------~--~~l----------------~~~~   97 (477)
                      ++||+|||+|.||++||..+++.|.+|+|+||....+.++...+.++       +  ..+                ....
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   80 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI   80 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            37999999999999999999999999999999654322222222110       0  000                0011


Q ss_pred             HHHHHHHhhhhhCCccccccc----cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEe--cCCEEE-EEecCC
Q 011787           98 HMYHEAMHSFASHGVKFSSVE----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPSEVS-VDTIEG  170 (477)
Q Consensus        98 ~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~-v~~~~g  170 (477)
                      ........++.++|+++....    ..+.............+.+.+....++.+++++.+.+..+  +...+. +.. ++
T Consensus        81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g  159 (466)
T PRK08401         81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DG  159 (466)
T ss_pred             HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CC
Confidence            111223355666777654211    1111111101111233444555566677899887765554  233332 333 44


Q ss_pred             ceEEEEecEEEEccCCCCC
Q 011787          171 GNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       171 ~~~~i~~d~lvlAtG~~~~  189 (477)
                        ..+.++.||||||+...
T Consensus       160 --~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        160 --ELLKFDATVIATGGFSG  176 (466)
T ss_pred             --EEEEeCeEEECCCcCcC
Confidence              57899999999998764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.38  E-value=1.8e-11  Score=125.83  Aligned_cols=107  Identities=16%  Similarity=0.266  Sum_probs=78.2

Q ss_pred             ccCCCCeeEEEcccHHHHHHHHH-------HHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          210 LNEVPKKLVVIGAGYIGLEMGSV-------WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       210 ~~~~~~~v~IiG~G~~g~e~a~~-------l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      +...|+.++++|++.++++++..       +.+.+.+|++....+.....+...+...+.+.+++.|+++++++.++++.
T Consensus       156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~  235 (557)
T PRK07843        156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY  235 (557)
T ss_pred             cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence            44567889999999999998865       66777777776555444445667788888899999999999999999998


Q ss_pred             EcCCeEE-EEEeecCCCceEEEEcC-EEEEeec-CCCCC
Q 011787          283 LSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAG-RTPFT  318 (477)
Q Consensus       283 ~~~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G-~~p~~  318 (477)
                      .+++++. +....  ++....+.++ .||+|+| +.+|.
T Consensus       236 ~~~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~  272 (557)
T PRK07843        236 VEDGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNE  272 (557)
T ss_pred             EeCCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCH
Confidence            7666554 44432  3344578886 5888775 55543

>PRK09897 hypothetical protein; Provisional

Probab=99.36  E-value=1e-10  Score=117.96  Aligned_cols=201  Identities=16%  Similarity=0.126  Sum_probs=108.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCC-ceeeccCccCchhhhh---------hhHHHHHHHhh----
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALG-GTCLNVGCIPSKALLH---------SSHMYHEAMHS----  106 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~G-G~~~~~~~~p~~~l~~---------~~~~~~~~~~~----  106 (477)
                      +++|+||||||+|+++|.+|.+.+  .+|+|+|++..+| |.. +...-++..+..         ....+..+...    
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a-ys~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~   79 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP-YSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS   79 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee-ecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence            358999999999999999998864  5899999988888 542 222111111110         01111111110    


Q ss_pred             -hhhCCccccccccChHHHHH--HHHHHHHHHHHHHHHHhhhCC--eEEEEe-EEEEec--CCEEEEEecCCceEEEEec
Q 011787          107 -FASHGVKFSSVEVDLPAMMA--QKDKAVSNLTRGIEGLFKKNK--VTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGK  178 (477)
Q Consensus       107 -~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d  178 (477)
                       +...++.....  +-..+.+  ...+++......+...+...+  ++++.. .+..+.  .+.+.+.+.++ ...+.+|
T Consensus        80 ~~~~~g~~~~~l--~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g-g~~i~aD  156 (534)
T PRK09897         80 HLQRYGVKKETL--HDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD-LPSETFD  156 (534)
T ss_pred             HHHhcCCcceee--cCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC-CeEEEcC
Confidence             11122221100  0001111  111222333333334444454  566544 555543  34566665443 2578999


Q ss_pred             EEEEccCCCCCCCCCCccCCceEecchhhhcc-cCCCCeeEEEcccHHHHHHHHHHHHcC-------------------C
Q 011787          179 NIIIATGSDVKSLPGITIDEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLG-------------------S  238 (477)
Q Consensus       179 ~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~v~IiG~G~~g~e~a~~l~~~g-------------------~  238 (477)
                      +||||||..++..+..  ....+.+....... ...+.+|+|+|.|.++++.+..|...|                   .
T Consensus       157 ~VVLAtGh~~p~~~~~--~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~  234 (534)
T PRK09897        157 LAVIATGHVWPDEEEA--TRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASE  234 (534)
T ss_pred             EEEECCCCCCCCCChh--hccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCC
Confidence            9999999865432211  11112122211111 112689999999999999999987552                   2


Q ss_pred             --cEEEEEeCCCc
Q 011787          239 --EVTVVEFAADI  249 (477)
Q Consensus       239 --~Vtli~~~~~~  249 (477)
                        +++.++|+..+
T Consensus       235 ~~~I~a~SRrGl~  247 (534)
T PRK09897        235 KLNITLMSRTGIL  247 (534)
T ss_pred             CceEEEEeCCCCC
Confidence              68888887764

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.35  E-value=2.3e-11  Score=116.53  Aligned_cols=312  Identities=21%  Similarity=0.269  Sum_probs=152.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC--------CceeeccCccCc------------------hhhhhhhH
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL--------GGTCLNVGCIPS------------------KALLHSSH   98 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~--------GG~~~~~~~~p~------------------~~l~~~~~   98 (477)
                      ||+|||+|.|||++|+.|.+. ++|+|+.|...-        ||.....+.-.+                  ........
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999999999999999998 999999996533        344332221111                  11111112


Q ss_pred             HHHHHHhhhhhCCccccccc---cC--------hHHHHHHHHHHHHHHHHHHHHHhh-hCCeEEEEeE-EEE--ecCC-E
Q 011787           99 MYHEAMHSFASHGVKFSSVE---VD--------LPAMMAQKDKAVSNLTRGIEGLFK-KNKVTYVKGY-GKF--ISPS-E  162 (477)
Q Consensus        99 ~~~~~~~~~~~~g~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~--~~~~-~  162 (477)
                      ......+++..+|++++...   +.        ...+....+...+.+...+....+ ..+|+++.+. +..  ++++ .
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~  167 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG  167 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence            22234456677888775322   11        111111112223334444443333 4689999884 322  2333 2


Q ss_pred             E-EEEecC--CceEEEEecEEEEccCCCCCC------CCCCccCCc-------eEecchhhhcccCCCCeeEEEcccHHH
Q 011787          163 V-SVDTIE--GGNTVVKGKNIIIATGSDVKS------LPGITIDEK-------RIVSSTGALALNEVPKKLVVIGAGYIG  226 (477)
Q Consensus       163 ~-~v~~~~--g~~~~i~~d~lvlAtG~~~~~------~~g~~~~~~-------~~~~~~~~~~~~~~~~~v~IiG~G~~g  226 (477)
                      + -+...+  ++...+.++.+|||||.-...      |.....++-       -...-.++.++.  | +.+-.+ +-..
T Consensus       168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFH--P-T~l~~~-~~~~  243 (518)
T COG0029         168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFH--P-TALYIP-QRRA  243 (518)
T ss_pred             EeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeec--c-ceecCC-CCcc
Confidence            2 233222  235788999999999975421      211111110       000001111111  1 111111 1111


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCcCCCCCH--------HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCC
Q 011787          227 LEMGSVWARLGSEVTVVEFAADIVPSMDG--------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGG  298 (477)
Q Consensus       227 ~e~a~~l~~~g~~Vtli~~~~~~~~~~~~--------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~  298 (477)
                      .-+...++-.|. +-+-..+.++++.+++        -++..+...+++.|-++++..+-  +.  +..+.         
T Consensus       244 ~LiSEAVRGEGA-~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s~--~~--~~~~~---------  309 (518)
T COG0029         244 FLISEAVRGEGA-ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDISH--IP--GDFFE---------  309 (518)
T ss_pred             ceeehhhhcCcc-EEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEeccC--CC--chhhh---------
Confidence            111222333332 2333456667764432        24555666677666544432111  10  00010         


Q ss_pred             ceEEEEc-CEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC-----CCCchhHHHHH----
Q 011787          299 EKTILEA-DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-----GPMLAHKAEED----  368 (477)
Q Consensus       299 ~~~~i~~-D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~-----~~~~~~~A~~~----  368 (477)
                        ++++. ...+...|..|..+.++.-.  -.---.|+|.||.+.||++|++||+|.|+.     ...+++++..+    
T Consensus       310 --~rFP~I~~~c~~~GiD~~r~~IPV~P--aaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~  385 (518)
T COG0029         310 --RRFPTIYAACLKAGIDPTREPIPVVP--AAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVF  385 (518)
T ss_pred             --hhCcHHHHHHHHcCCCcccCccCccc--hhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHH
Confidence              11110 01122234444433221110  000125899999999999999999999983     34477776665    


Q ss_pred             HHHHHHHHcCC
Q 011787          369 GVACVEFLAGK  379 (477)
Q Consensus       369 g~~aa~~i~~~  379 (477)
                      |..+|++|.+.
T Consensus       386 g~~aA~~i~~~  396 (518)
T COG0029         386 GKRAAEDIAGR  396 (518)
T ss_pred             HHHHHHHhhcc
Confidence            56778888765

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.34  E-value=1.7e-11  Score=126.67  Aligned_cols=112  Identities=13%  Similarity=0.161  Sum_probs=82.4

Q ss_pred             chhhhcccCCCCeeEEEcccH--HHHHHHHHHHHcCCcEEEEEeCCCcCCCCC--------------HHHHHHHHHHHHh
Q 011787          204 STGALALNEVPKKLVVIGAGY--IGLEMGSVWARLGSEVTVVEFAADIVPSMD--------------GEIRKQFQRSLEK  267 (477)
Q Consensus       204 ~~~~~~~~~~~~~v~IiG~G~--~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~--------------~~~~~~~~~~l~~  267 (477)
                      .++..++...++++.|+|++.  ++.+++..+...+..++++.+..++++.++              ..+...+.+.+++
T Consensus       147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~  226 (574)
T PRK12842        147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD  226 (574)
T ss_pred             hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence            455566777789999999998  899999999888888877665554443322              3566677888889


Q ss_pred             cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcC-EEEEeecCCCC
Q 011787          268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTPF  317 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~~p~  317 (477)
                      .|+++++++.++++..+++++. +.+..  .+....+.++ .||+|+|..++
T Consensus       227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        227 LGIPILTGTPARELLTEGGRVVGARVID--AGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CCCEEEeCCEEEEEEeeCCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccc
Confidence            9999999999999987766554 44432  1222457886 79999997764

>TIGR00551 nadB L-aspartate oxidase

Probab=99.34  E-value=1.9e-11  Score=123.96  Aligned_cols=146  Identities=21%  Similarity=0.249  Sum_probs=79.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc-Ccc-----C----c----------------hhhhhh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-----P----S----------------KALLHS   96 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-----p----~----------------~~l~~~   96 (477)
                      ++||+|||+|.||++||..+++.|. |+|+||....+|..... +.+     +    .                ..+...
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4799999999999999999999997 99999987666543221 110     0    0                000011


Q ss_pred             hHHHHHHHhhhhhCCccccccc-----------cChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeE-EEEe--cCC
Q 011787           97 SHMYHEAMHSFASHGVKFSSVE-----------VDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGY-GKFI--SPS  161 (477)
Q Consensus        97 ~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~--~~~  161 (477)
                      .........++..+|+++....           ..+.......+.....+...+.+..++ .+++++.++ +..+  +..
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g  160 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG  160 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence            1112234455667777654211           000000000000112233344444444 589888774 3333  333


Q ss_pred             EEE-EEecC-CceEEEEecEEEEccCCCCC
Q 011787          162 EVS-VDTIE-GGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       162 ~~~-v~~~~-g~~~~i~~d~lvlAtG~~~~  189 (477)
                      .+. +...+ +....+.++.||+|||....
T Consensus       161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       161 RVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             EEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            332 32222 33457899999999998653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=1.9e-11  Score=125.48  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC-CCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~GG~   81 (477)
                      ..+||||||+|.||++||..+ +.|.+|+|+||... .||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~   45 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC   45 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence            458999999999999999999 88999999999654 4553

>PRK08275 putative oxidoreductase; Provisional

Probab=99.32  E-value=3e-11  Score=124.34  Aligned_cols=147  Identities=24%  Similarity=0.363  Sum_probs=80.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCC-Ccee-eccCc-----cC---------------------ch
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGAL-GGTC-LNVGC-----IP---------------------SK   91 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~-GG~~-~~~~~-----~p---------------------~~   91 (477)
                      ..+||||||||.||++||..+++.  |.+|+|+||.... ||.. ...+.     .+                     ..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   87 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK   87 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence            358999999999999999999987  6899999997653 2221 11100     01                     00


Q ss_pred             hhhhhhHHHHHHHhhhhhCCcccccc---ccChHHHHHH-----HHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--c-
Q 011787           92 ALLHSSHMYHEAMHSFASHGVKFSSV---EVDLPAMMAQ-----KDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--S-  159 (477)
Q Consensus        92 ~l~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~-  159 (477)
                      .+............++..+|+++...   .+........     .......+...+....++.+++++..+ +..+  + 
T Consensus        88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~  167 (554)
T PRK08275         88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA  167 (554)
T ss_pred             HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence            01111111123445566777766421   1111100000     000112233444455566789888774 3333  3 


Q ss_pred             CCEE-EE---EecCCceEEEEecEEEEccCCCC
Q 011787          160 PSEV-SV---DTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       160 ~~~~-~v---~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      ...+ -+   ...+|....+.++.||||||+..
T Consensus       168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             CCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            2222 12   23456456789999999999865

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.28  E-value=7.9e-11  Score=121.51  Aligned_cols=40  Identities=35%  Similarity=0.461  Sum_probs=34.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCcee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC   82 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~   82 (477)
                      .+||+|||+|.||++||..+++.  |.+|+|+||....+|.+
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            58999999999999999999987  47999999987666544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.27  E-value=4e-11  Score=129.79  Aligned_cols=46  Identities=30%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             CCCeecCCCCCCCCCCeEEecccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787          333 MGRIPVNERFATNIPGVYAIGDVIPGP-MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       333 ~g~i~vd~~l~t~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~~  378 (477)
                      .|+|.||.+++|++||+||+|||+..+ .....|...|+.|+.++..
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~  407 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG  407 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence            489999999999999999999997543 3444577788888887753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.26  E-value=7.6e-11  Score=121.84  Aligned_cols=246  Identities=19%  Similarity=0.229  Sum_probs=132.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC---ccCchhhhhhhHHHHHH---HhhhhhCCccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKALLHSSHMYHEA---MHSFASHGVKF  114 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~l~~~~~~~~~~---~~~~~~~g~~~  114 (477)
                      ..++||+|||+|++|++||..+++.|++|+||||...+||++...+   |.|...+..........   ...+....   
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---   86 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHEL---   86 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHh---
Confidence            3468999999999999999999999999999999888999887665   45655443322221111   11111100   


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCC
Q 011787          115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG  193 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g  193 (477)
                       ....+...+..+.+..    .+ ..+|+.+ .++++.....           .     ..+.....-.++|.+...+..
T Consensus        87 -~~~~~~~l~~~~~~~s----~~-~~~wl~~~~gv~~~~~~~-----------~-----~d~~~~~~~~~~ggr~~~~~~  144 (581)
T PRK06134         87 -GARYDAARIDAFLEAG----PH-MVAFFERHTALRFADGNA-----------I-----PDYHGDTPGAATGGRSLIAAP  144 (581)
T ss_pred             -CcCCCHHHHHHHHhcc----HH-HHHHHHhcCCceeeecCC-----------C-----CCCCCCCCCCCCCCCeeccCC
Confidence             0011111111111111    11 1233433 3555421100           0     000111112344544322111


Q ss_pred             CccCCceEecchhhhcccCCCCeeEEEcccHHH-HHHHHHHHHcCCcEEEEEeCCCcCC--------------CCCHHHH
Q 011787          194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG-LEMGSVWARLGSEVTVVEFAADIVP--------------SMDGEIR  258 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g-~e~a~~l~~~g~~Vtli~~~~~~~~--------------~~~~~~~  258 (477)
                      .+  ....  .++...+...+.++.++|++.++ .+++..+...+..+.+..+..+++.              .....+.
T Consensus       145 ~~--g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  220 (581)
T PRK06134        145 FD--GREL--GALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALV  220 (581)
T ss_pred             CC--hhhh--hHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHH
Confidence            11  1000  13344455556677788887765 6666666555544443322221111              1234566


Q ss_pred             HHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEc-CEEEEeecCCCC
Q 011787          259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEA-DVVLVSAGRTPF  317 (477)
Q Consensus       259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~-D~vi~a~G~~p~  317 (477)
                      ..+.+.+++.|++++++++++++..+++++. +.+..  ++....+.+ +.||+|+|-..+
T Consensus       221 ~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        221 ARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCccc
Confidence            7788888999999999999999876666543 44432  122346888 999999986554

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.26  E-value=1.7e-11  Score=119.88  Aligned_cols=136  Identities=24%  Similarity=0.322  Sum_probs=73.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC--------ceeeccC-ccCchhh-----------hh--hhHHHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNVG-CIPSKAL-----------LH--SSHMYH  101 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G--------G~~~~~~-~~p~~~l-----------~~--~~~~~~  101 (477)
                      |||+||||||||+.||..|++.|.+|+|+||++.+|        |.|.... ......+           ..  ......
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            799999999999999999999999999999998886        6776443 1111111           01  111223


Q ss_pred             HHHhhhhhCCccccc----cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCE-EEEEecCCceE
Q 011787          102 EAMHSFASHGVKFSS----VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEGGNT  173 (477)
Q Consensus       102 ~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~-~~v~~~~g~~~  173 (477)
                      +....+.+.|+....    ..++.+.   .    ...+...+...+++.++++..++ +..+  +.+. +.|.++++  .
T Consensus        81 d~~~ff~~~Gv~~~~~~~gr~fP~s~---~----a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~  151 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEEDGRVFPKSD---K----ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--G  151 (409)
T ss_dssp             HHHHHHHHTT--EEE-STTEEEETT---------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--E
T ss_pred             HHHHHHHhcCCeEEEcCCCEECCCCC---c----HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--c
Confidence            455667777875421    1111211   1    12233444556667799998774 4444  3444 77777555  7


Q ss_pred             EEEecEEEEccCCCC
Q 011787          174 VVKGKNIIIATGSDV  188 (477)
Q Consensus       174 ~i~~d~lvlAtG~~~  188 (477)
                      .+.+|+||||||+..
T Consensus       152 ~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  152 EYEADAVILATGGKS  166 (409)
T ss_dssp             EEEESEEEE----SS
T ss_pred             cccCCEEEEecCCCC
Confidence            999999999999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.24  E-value=3.7e-10  Score=115.73  Aligned_cols=39  Identities=26%  Similarity=0.460  Sum_probs=34.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      .++||||||+|.||++||..+++. .+|+|+||....||.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            458999999999999999999987 899999998776664

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.24  E-value=8.7e-11  Score=121.71  Aligned_cols=37  Identities=35%  Similarity=0.553  Sum_probs=33.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG   79 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~G   79 (477)
                      .+||+|||||.||++||..+++.  |.+|+||||....+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~   49 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR   49 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence            58999999999999999999998  99999999976543

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.23  E-value=1.2e-10  Score=119.32  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=35.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      .++||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g   53 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG   53 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence            468999999999999999999999999999999876654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.23  E-value=2.3e-10  Score=118.36  Aligned_cols=40  Identities=30%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      |..++||+|||||.||++||+++++. .+|+|+||....+|
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            34568999999999999999999986 89999999765443

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.21  E-value=1.5e-08  Score=98.28  Aligned_cols=121  Identities=17%  Similarity=0.227  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCCCCCCccc-----cce
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFTAGLGLDK-----IGV  328 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~~~l~~~~-----~gl  328 (477)
                      ..+.+.+.+.+++.|++++.+.+|.++..+++++......  .+....+.+|.+|+|+|.. +..-.-.++.     .++
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~--~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L  340 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR--NHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL  340 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEec--CCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence            4567778888999999999999999998877776643321  1112589999999999977 3210000000     011


Q ss_pred             ee---------------c----CCCCeecCCCCCC-----CCCCeEEecccCCCCCc------hhHHHHHHHHHHHHHc
Q 011787          329 ET---------------D----KMGRIPVNERFAT-----NIPGVYAIGDVIPGPML------AHKAEEDGVACVEFLA  377 (477)
Q Consensus       329 ~~---------------~----~~g~i~vd~~l~t-----~~~~vya~GD~~~~~~~------~~~A~~~g~~aa~~i~  377 (477)
                      ++               +    ..-+|.+|+++|.     ..+|+||+|-+.++...      .-.|+..|-.||++|.
T Consensus       341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~  419 (419)
T TIGR03378       341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII  419 (419)
T ss_pred             CcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence            11               0    1135789999883     38999999999876542      3467888888888773

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.21  E-value=1.9e-10  Score=117.04  Aligned_cols=39  Identities=21%  Similarity=0.327  Sum_probs=34.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ++||||||+|.||++||.++++ |.+|+||||....||.+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            5899999999999999999976 89999999987766654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.21  E-value=1.5e-10  Score=119.21  Aligned_cols=40  Identities=35%  Similarity=0.454  Sum_probs=34.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCcee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC   82 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~   82 (477)
                      ++||+|||||.||++||..+++.  |.+|+|+||....||..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            57999999999999999999987  58999999977666533

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.20  E-value=1.4e-10  Score=118.68  Aligned_cols=41  Identities=27%  Similarity=0.367  Sum_probs=35.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ...+||||||+|.||++||.++++ |.+|+||||....||..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s   47 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSAS   47 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCch
Confidence            346899999999999999999964 99999999987776643

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.20  E-value=1.1e-10  Score=120.11  Aligned_cols=39  Identities=38%  Similarity=0.465  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      ..+||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g   42 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS   42 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            458999999999999999999999999999999766554

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.18  E-value=3.1e-10  Score=113.14  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      .++||||||+|.||++||..+. .|.+|+||||....||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999985 69999999998776654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.17  E-value=1e-10  Score=120.76  Aligned_cols=39  Identities=33%  Similarity=0.568  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG   80 (477)
                      .++||+|||||.||++||.++++.  |.+|+|+||....||
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg   42 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS   42 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence            358999999999999999999987  489999999766554

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.16  E-value=5.8e-09  Score=108.09  Aligned_cols=36  Identities=42%  Similarity=0.581  Sum_probs=32.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      ||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g   36 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS   36 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            799999999999999999999999999999765543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.15  E-value=7e-09  Score=107.41  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=35.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC---CeEEEEecCCCCCce
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLG---LKTTCIEKRGALGGT   81 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g---~~V~lie~~~~~GG~   81 (477)
                      ..++||+|||||.||++||..+++.|   .+|+|+||....||.
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~   46 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH   46 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence            34689999999999999999999998   899999997766543

>PLN02815 L-aspartate oxidase

Probab=99.15  E-value=9.9e-10  Score=112.98  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      .++||||||+|.||++||+.+++.| +|+|+||....||.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            3589999999999999999999999 99999998877663

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.15  E-value=5.3e-10  Score=115.56  Aligned_cols=39  Identities=31%  Similarity=0.487  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      .++||||||+|.||++||.++++.|.+|+|+||....||
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            357999999999999999999999999999999776554

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.15  E-value=4.7e-09  Score=109.37  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      .++||+|||||.||++||..+++.|.+|+|+||...+|
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            46899999999999999999999999999999866553

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.11  E-value=1.8e-08  Score=103.78  Aligned_cols=34  Identities=41%  Similarity=0.663  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHH----HCCCeEEEEecCCCC
Q 011787           45 DVVVIGGGPGGYVAAIKAA----QLGLKTTCIEKRGAL   78 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~----~~g~~V~lie~~~~~   78 (477)
                      ||||||||.||++||+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            7999999999999999998    679999999996543

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.10  E-value=7.1e-10  Score=111.93  Aligned_cols=142  Identities=24%  Similarity=0.418  Sum_probs=78.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHH-------hhhhhCCc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAM-------HSFASHGV  112 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~-------~~~~~~g~  112 (477)
                      +.+|||+|||||+||+.||..+++.|.+|+|||++. .+|+.    +|.|+..........+...       ......++
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m----~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi   77 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM----SCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI   77 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc----CCccccccchhhHHHHHHHhcCCHHHHHHhhccC
Confidence            346999999999999999999999999999999973 56642    4444432222222111110       01111122


Q ss_pred             cccccccC-hHHHHHHHHHH-HHHHHHHHHHHhhh-CCeEEEEeEEEEe--cCCEE-EEEecCCceEEEEecEEEEccCC
Q 011787          113 KFSSVEVD-LPAMMAQKDKA-VSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVKGKNIIIATGS  186 (477)
Q Consensus       113 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~-~v~~~~g~~~~i~~d~lvlAtG~  186 (477)
                      .+...... -+.......+. ...+...+...+.+ .+++++.+.+..+  +.+.+ .|.+.+|  ..+.++.||+|||+
T Consensus        78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG--~~I~Ak~VIlATGT  155 (618)
T PRK05192         78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDG--LEFRAKAVVLTTGT  155 (618)
T ss_pred             ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCC--CEEECCEEEEeeCc
Confidence            11100000 00000000000 11223333344443 4889888877654  34443 3667777  78999999999997


Q ss_pred             CC
Q 011787          187 DV  188 (477)
Q Consensus       187 ~~  188 (477)
                      ..
T Consensus       156 FL  157 (618)
T PRK05192        156 FL  157 (618)
T ss_pred             ch
Confidence            43

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=99.10  E-value=1e-08  Score=93.03  Aligned_cols=120  Identities=20%  Similarity=0.211  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCC-----------Cccc
Q 011787          257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-----------GLDK  325 (477)
Q Consensus       257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l-----------~~~~  325 (477)
                      +.+.+...++..|..++.+-.|...+-.+++++-....  +.....+.+|..++|+|.--.....           .++-
T Consensus       260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr--n~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi  337 (421)
T COG3075         260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR--NHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDI  337 (421)
T ss_pred             HHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec--ccccCCCChhHeeeeccccccccchhhhhhhhcchhhccc
Confidence            45566778888999999999999998888887643321  2233467899999999833221100           0110


Q ss_pred             cceee----------cC----CCCeecCCCCCC-----CCCCeEEecccCCCCCc------hhHHHHHHHHHHHHHcC
Q 011787          326 IGVET----------DK----MGRIPVNERFAT-----NIPGVYAIGDVIPGPML------AHKAEEDGVACVEFLAG  378 (477)
Q Consensus       326 ~gl~~----------~~----~g~i~vd~~l~t-----~~~~vya~GD~~~~~~~------~~~A~~~g~~aa~~i~~  378 (477)
                      .....          .+    .-++.+|++++.     .+.|+||||.+.++...      .-.|...|..||+.|+.
T Consensus       338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~  415 (421)
T COG3075         338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE  415 (421)
T ss_pred             ccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence            00000          00    124677888874     36789999999977542      23566667777777764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.08  E-value=7.5e-10  Score=115.47  Aligned_cols=39  Identities=38%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      ..+||||||||.||++||..+++.|.+|+|+||....+|
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s   42 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS   42 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence            468999999999999999999999999999999765543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.05  E-value=8.1e-09  Score=106.95  Aligned_cols=33  Identities=36%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             EEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        46 vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      |||||+|.||++||..+++.|.+|+|+||...+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            689999999999999999999999999997734

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.00  E-value=8e-09  Score=95.19  Aligned_cols=135  Identities=24%  Similarity=0.341  Sum_probs=76.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .++||+||||||||++||++|++.|++|+|+|+...+||.....+. .+...+      .......+..+++++......
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v------~~~~~~~l~~~gv~~~~~~~g   97 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVV------QEEADEILDEFGIRYKEVEDG   97 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccc------hHHHHHHHHHCCCCceeecCc
Confidence            3589999999999999999999999999999998888764322111 111111      112233345566654321110


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCC-EE-EEEec------CC---ceEEEEecEEEEccCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPS-EV-SVDTI------EG---GNTVVKGKNIIIATGS  186 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~-~~-~v~~~------~g---~~~~i~~d~lvlAtG~  186 (477)
                      +.  ...    ...+...+.....+.+++++.++ +..+  +++ .+ .+...      .+   +...++++.+|+|||.
T Consensus        98 ~~--~vd----~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~  171 (257)
T PRK04176         98 LY--VAD----SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH  171 (257)
T ss_pred             ce--ecc----HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence            00  000    12233334455566788888773 3332  222 21 11111      11   2357899999999996


Q ss_pred             CC
Q 011787          187 DV  188 (477)
Q Consensus       187 ~~  188 (477)
                      ..
T Consensus       172 ~a  173 (257)
T PRK04176        172 DA  173 (257)
T ss_pred             Cc
Confidence            54

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.00  E-value=7.4e-09  Score=105.49  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC-CCc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGG   80 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~-~GG   80 (477)
                      ..++||+|||+|.||++||.+++  +.+|+|+||... .||
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg   45 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGA   45 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCc
Confidence            34689999999999999999997  579999999765 444

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.96  E-value=9.2e-09  Score=94.44  Aligned_cols=40  Identities=43%  Similarity=0.716  Sum_probs=36.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      .++||+||||||||++||+.|++.|++|+|+||+..+||.
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg   59 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG   59 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            3589999999999999999999999999999999888754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.94  E-value=4.6e-09  Score=103.84  Aligned_cols=140  Identities=20%  Similarity=0.281  Sum_probs=76.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhhhCC-ccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHG-VKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~~~g-~~~~~~~~~~  121 (477)
                      +||+||||||||++||..|++.|++|+|+|+....+..|  .+++|...+.... ...... ....... +.+....+++
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g-~~~~~~~~~i~~~~~~~p~~~~~~~   77 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC--GGAIPLCMVDEFA-LPRDIIDRRVTKMKMISPSNIAVDI   77 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc--cccccHhhHhhcc-CchhHHHhhhceeEEecCCceEEEe
Confidence            589999999999999999999999999999976655444  2344433221110 001111 0011000 0011111111


Q ss_pred             HH------H-HHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec-----CCEEEEE--ecC-----CceEEEEecEEEE
Q 011787          122 PA------M-MAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-----PSEVSVD--TIE-----GGNTVVKGKNIII  182 (477)
Q Consensus       122 ~~------~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~v~--~~~-----g~~~~i~~d~lvl  182 (477)
                      ..      . ....   -..+.+.+.....+.+++++.+++..+.     .....+.  ..+     |+..+++++.||.
T Consensus        78 ~~~~~~~~~~~~v~---R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIg  154 (398)
T TIGR02028        78 GRTLKEHEYIGMLR---REVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIG  154 (398)
T ss_pred             ccCCCCCCceeeee---HHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEE
Confidence            10      0 0000   1223333445566679999888765431     1223333  222     4346899999999


Q ss_pred             ccCCCCC
Q 011787          183 ATGSDVK  189 (477)
Q Consensus       183 AtG~~~~  189 (477)
                      |+|....
T Consensus       155 ADG~~S~  161 (398)
T TIGR02028       155 ADGANSR  161 (398)
T ss_pred             CCCcchH
Confidence            9998763

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.93  E-value=1.3e-07  Score=94.19  Aligned_cols=61  Identities=26%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.+....++.++.+|.||+|+|...
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            4556677888889999999999999987777766655421110134789999999999653

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.91  E-value=6.5e-08  Score=95.83  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+.+.+.+.+++.|++++++++|.+++..++++.+.+.     ++ ++.+|.||+|+|...
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-----~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTT-----QG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEEC-----CC-EEEeCEEEECCCcch
Confidence            3567788888889999999999999999877776655543     33 799999999999765

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.90  E-value=7.5e-08  Score=94.03  Aligned_cols=59  Identities=17%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++. +.+.     ++. +.+|.||+|+|.....
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~-----~g~-i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTS-----DGE-IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEET-----TEE-EEECEEEE--GGGHHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhccccccccccc-----ccc-cccceeEeccccccee
Confidence            357788888888999999999999999999988887 7765     555 9999999999975443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PLN02463 lycopene beta cyclase

Probab=98.90  E-value=2.4e-08  Score=99.36  Aligned_cols=142  Identities=19%  Similarity=0.169  Sum_probs=76.9

Q ss_pred             CCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc
Q 011787           37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS  116 (477)
Q Consensus        37 ~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~  116 (477)
                      -+.....+||+||||||||+++|..|++.|++|+|+|+.+...  +.+..+.-...+... ...+..........+....
T Consensus        22 ~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~--~p~~~g~w~~~l~~l-gl~~~l~~~w~~~~v~~~~   98 (447)
T PLN02463         22 DPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI--WPNNYGVWVDEFEAL-GLLDCLDTTWPGAVVYIDD   98 (447)
T ss_pred             CCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch--hccccchHHHHHHHC-CcHHHHHhhCCCcEEEEeC
Confidence            3344567899999999999999999999999999999954321  111111100001000 0000000000000000000


Q ss_pred             -----cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          117 -----VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       117 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                           ...++..+  .    -..+.+.+.+.+...++++..+++..+.  .+...|.+.+|  .++++|.||.|+|....
T Consensus        99 ~~~~~~~~~y~~V--~----R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463         99 GKKKDLDRPYGRV--N----RKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSRC  170 (447)
T ss_pred             CCCccccCcceeE--E----HHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCcC
Confidence                 00011000  0    1122333344445678988777666553  44567777777  68999999999998764

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.88  E-value=7.6e-08  Score=95.55  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      ++.+.+.+.+.+. ++++++++.+++++.+++++.+++.     +++++.+|.||.|.|..+..
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQ-----QGNRWTGDALIGCDGVKSVV  168 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEc-----CCCEEecCEEEECCCcChHH
Confidence            3455566666555 5999999999999877777777654     45689999999999987655

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.88  E-value=1.4e-08  Score=100.51  Aligned_cols=143  Identities=22%  Similarity=0.265  Sum_probs=75.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHH-HHhhhhhCCc--cccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE-AMHSFASHGV--KFSSVE  118 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~-~~~~~~~~g~--~~~~~~  118 (477)
                      .+|||+||||||||++||+.|++.|++|+|+||.+.+|......+.+....+......... ........-+  ......
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~   81 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA   81 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence            4699999999999999999999999999999998888753222111111000000000000 0000000000  000000


Q ss_pred             cChHH--HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EEe--cCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          119 VDLPA--MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       119 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      +..+.  ....   ....+.+++....++.+++++.++. ..+  +.....+....+. .++.++.+|.|+|...
T Consensus        82 ~~~~~~~~y~v---~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s  152 (396)
T COG0644          82 IEVPVGEGYIV---DRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS  152 (396)
T ss_pred             EecCCCceEEE---EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence            11000  0000   0122344556667778999988753 222  2333333332222 6899999999999875

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.87  E-value=8.4e-08  Score=95.91  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      ..+...+.+.+++.|+++++++.++++..+++++. +.+.+..++....+.++.||+|+|-...
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            46677788889999999999999999998877765 5655445566678999999999986554

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.86  E-value=1.6e-08  Score=100.09  Aligned_cols=134  Identities=19%  Similarity=0.277  Sum_probs=74.9

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhhh-CCccccccc--cC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFAS-HGVKFSSVE--VD  120 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~~-~g~~~~~~~--~~  120 (477)
                      ||+||||||||+++|..|++.|++|+|||+++..|+.+. ++..+ ..+....  ..... ..... ..+......  .+
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   76 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHT-YGVWD-DDLSDLG--LADCVEHVWPDVYEYRFPKQPRKLG   76 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcc-ccccH-hhhhhhc--hhhHHhhcCCCceEEecCCcchhcC
Confidence            799999999999999999999999999999877776431 11111 0110000  01110 00000 000000000  00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec---CCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      .....-.    -..+.+.+.+...+.+++++.+++..+.   ...+.|.+.+|  .+++++.||.|+|..+
T Consensus        77 ~~~~~i~----~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        77 TAYGSVD----STRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP  141 (388)
T ss_pred             CceeEEc----HHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence            0000000    1223334444555668888877766553   33456666666  6899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02661 Putative thiazole synthesis

Probab=98.85  E-value=2.2e-08  Score=94.46  Aligned_cols=136  Identities=19%  Similarity=0.284  Sum_probs=75.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCCCc-eeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGG-TCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~GG-~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      .++||+|||||+||++||+.|++. |++|+|||+...+|| .|....... ..+....     ..+.+.++|++++... 
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~-~~vv~~~-----a~e~LeElGV~fd~~d-  163 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFS-AMVVRKP-----AHLFLDELGVPYDEQE-  163 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCccccc-ccccccH-----HHHHHHHcCCCcccCC-
Confidence            368999999999999999999986 899999999888876 443211111 1111111     1223556677654320 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EE--ecCCEE-EEEe------cCC------ceEEEEecEEEEc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KF--ISPSEV-SVDT------IEG------GNTVVKGKNIIIA  183 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~~-~v~~------~~g------~~~~i~~d~lvlA  183 (477)
                      ++... .......   ........++.+++++.+.. ..  .+.+.. .+..      .++      +...+.++++|+|
T Consensus       164 gy~vv-~ha~e~~---stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlA  239 (357)
T PLN02661        164 NYVVI-KHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSS  239 (357)
T ss_pred             CeeEe-cchHHHH---HHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEc
Confidence            00000 0111111   11122334456888887743 22  222221 1111      111      1246899999999


Q ss_pred             cCCCC
Q 011787          184 TGSDV  188 (477)
Q Consensus       184 tG~~~  188 (477)
                      ||...
T Consensus       240 TGh~g  244 (357)
T PLN02661        240 CGHDG  244 (357)
T ss_pred             CCCCC
Confidence            99754

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.85  E-value=3.7e-08  Score=100.07  Aligned_cols=41  Identities=49%  Similarity=0.634  Sum_probs=36.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      +..++||||||||.||+.||..+++.|.+|+|+||....+|
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg   43 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG   43 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence            45579999999999999999999999999999999776553

>PRK10015 oxidoreductase; Provisional

Probab=98.85  E-value=1.4e-07  Score=94.09  Aligned_cols=38  Identities=39%  Similarity=0.626  Sum_probs=34.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      .+|||+||||||||++||+.|++.|++|+|+||.+.+|
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            46999999999999999999999999999999976554

>PRK06847 hypothetical protein; Provisional

Probab=98.84  E-value=9.5e-08  Score=94.13  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      +++.+.+.+.+++.|+++++++++++++.+++.+.+.+.     +++++.+|.||.|+|..+...
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vI~AdG~~s~~r  166 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFS-----DGTTGRYDLVVGADGLYSKVR  166 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEc-----CCCEEEcCEEEECcCCCcchh
Confidence            567777888888889999999999999887777777664     456899999999999887653

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.84  E-value=5.6e-08  Score=92.56  Aligned_cols=99  Identities=22%  Similarity=0.344  Sum_probs=80.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC---c--------CCCC-----CHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM-----DGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~~-----~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      +++|||||+.|+++|..|++.|.+|+++++.+.   +        .|.+     +.++...+.+.+++.|+++++ .+|.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997651   1        1222     257778888889999999998 8999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +++..++.+.+.+.     ++.++.+|.+|+|+|..|+...
T Consensus        81 ~v~~~~~~~~v~~~-----~~~~~~~d~liiAtG~~~~~~~  116 (300)
T TIGR01292        81 KVDLSDRPFKVKTG-----DGKEYTAKAVIIATGASARKLG  116 (300)
T ss_pred             EEEecCCeeEEEeC-----CCCEEEeCEEEECCCCCcccCC
Confidence            99887766666653     4468999999999999987654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.84  E-value=6.7e-08  Score=97.94  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ..+...+.+.+++.|++++++++++++..+++++. +... ..++....+.++.||+|+|-
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~-~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAG-SAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEE-ccCCceEEEECCEEEECCCC
Confidence            45677788888899999999999999987666554 3332 12334567899999999984

>TIGR00275 flavoprotein, HI0933 family

Probab=98.83  E-value=6.6e-08  Score=95.56  Aligned_cols=80  Identities=19%  Similarity=0.329  Sum_probs=54.1

Q ss_pred             HHHHHHcCCcEEEEEeCCCcCCC--CCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787          230 GSVWARLGSEVTVVEFAADIVPS--MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV  307 (477)
Q Consensus       230 a~~l~~~g~~Vtli~~~~~~~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~  307 (477)
                      ...+...|.+++... ..+++|.  ...++.+.+.+.+++.|+++++++.|+++..+++.+.+++      ++..+.+|.
T Consensus        79 ~~~~~~~Gv~~~~~~-~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~------~~~~i~ad~  151 (400)
T TIGR00275        79 IDFFESLGLELKVEE-DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET------SGGEYEADK  151 (400)
T ss_pred             HHHHHHcCCeeEEec-CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE------CCcEEEcCE
Confidence            334444555554432 2222222  2356777888888999999999999999977666655554      234789999


Q ss_pred             EEEeecCCC
Q 011787          308 VLVSAGRTP  316 (477)
Q Consensus       308 vi~a~G~~p  316 (477)
                      ||+|+|...
T Consensus       152 VIlAtG~~s  160 (400)
T TIGR00275       152 VILATGGLS  160 (400)
T ss_pred             EEECCCCcc
Confidence            999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.83  E-value=3.5e-07  Score=94.04  Aligned_cols=54  Identities=33%  Similarity=0.621  Sum_probs=48.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC---ccCchhhhh
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKALLH   95 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~l~~   95 (477)
                      ..++||||||+| +|++||..+++.|.+|+||||.+.+||++...+   |+|++.+..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~   70 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLD   70 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHH
Confidence            347999999999 899999999999999999999989999999888   788776644

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.83  E-value=5.5e-08  Score=97.08  Aligned_cols=39  Identities=33%  Similarity=0.523  Sum_probs=35.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      .++||+||||||||++||+.|++.|++|+|+||...+|.
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~   42 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA   42 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence            469999999999999999999999999999999876653

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.82  E-value=2.4e-07  Score=91.48  Aligned_cols=56  Identities=20%  Similarity=0.154  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.     + .++.+|.||+|+|...
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~-----~-~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTT-----K-GSYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeC-----C-CEEEeCEEEEecCcch
Confidence            356677777788899999999999999877776666542     2 3799999999999653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.82  E-value=5.6e-08  Score=83.49  Aligned_cols=40  Identities=40%  Similarity=0.728  Sum_probs=36.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc-ee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TC   82 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG-~~   82 (477)
                      ..||+||||||+||+||++|++.|++|+|+|++-.+|| .|
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            47999999999999999999999999999999888875 44

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.80  E-value=2.3e-07  Score=90.25  Aligned_cols=58  Identities=33%  Similarity=0.537  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .++...+.+.+.++|+++.++++|+.|+..++++. +.+.   +++.+ ++|+.||.|.|...
T Consensus       153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~---~g~~~-~~ak~Vin~AGl~A  211 (429)
T COG0579         153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTS---NGEET-LEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEec---CCcEE-EEeeEEEECCchhH
Confidence            35677778888888999999999999999887533 4333   22222 99999999999654

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.78  E-value=6.4e-08  Score=96.77  Aligned_cols=38  Identities=39%  Similarity=0.516  Sum_probs=34.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      +...++||+||||||||++||..|++.|++|+|+|+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            34457999999999999999999999999999999964

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.78  E-value=1.8e-08  Score=96.60  Aligned_cols=125  Identities=26%  Similarity=0.457  Sum_probs=69.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEE-ecCCCCCceeeccCccCchhhhhhhHHHHHHHh-------hhhhCCcc---
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCI-EKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASHGVK---  113 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~li-e~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-------~~~~~g~~---  113 (477)
                      ||+|||||+||+.||+.+++.|.+|+|+ .+.+.+|.    ..|.|+..-............       .....++.   
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~----~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~   76 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE----MSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM   76 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc----ccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence            7999999999999999999999999999 33334433    345554322222222221110       01111221   


Q ss_pred             --------cccc--ccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEec--CCE-EEEEecCCceEEEEecE
Q 011787          114 --------FSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFIS--PSE-VSVDTIEGGNTVVKGKN  179 (477)
Q Consensus       114 --------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~--~~~-~~v~~~~g~~~~i~~d~  179 (477)
                              ...+  ..+-.           .+...+.+.++. .+++++.+.+..+.  .+. ..|.+.+|  ..+.+|.
T Consensus        77 lN~skGpav~a~r~qvDr~-----------~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~~~~a~~  143 (392)
T PF01134_consen   77 LNRSKGPAVHALRAQVDRD-----------KYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--EEIEADA  143 (392)
T ss_dssp             ESTTS-GGCTEEEEEE-HH-----------HHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--EEEEECE
T ss_pred             ccccCCCCccchHhhccHH-----------HHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--CEEecCE
Confidence                    1111  12211           223333344444 68999998887653  333 45777888  7899999


Q ss_pred             EEEccCC
Q 011787          180 IIIATGS  186 (477)
Q Consensus       180 lvlAtG~  186 (477)
                      +|+|||+
T Consensus       144 vVlaTGt  150 (392)
T PF01134_consen  144 VVLATGT  150 (392)
T ss_dssp             EEE-TTT
T ss_pred             EEEeccc
Confidence            9999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06184 hypothetical protein; Provisional

Probab=98.77  E-value=2e-07  Score=95.32  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+.+.+.+.+.+.|+++.+++++++++.+++++.+++...  ++++++.+|+||.|.|...
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--~~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGP--AGEETVRARYLVGADGGRS  168 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeC--CCeEEEEeCEEEECCCCch
Confidence            3455677777888999999999999998888887776432  2457899999999999554

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.77  E-value=5.4e-08  Score=99.21  Aligned_cols=41  Identities=37%  Similarity=0.644  Sum_probs=37.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      .++||||||+|.||++||+++++.|.+|+||||....||..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            46899999999999999999999999999999988888753

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.77  E-value=6.2e-08  Score=91.95  Aligned_cols=37  Identities=41%  Similarity=0.561  Sum_probs=33.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      |||+|||||+||+++|+.|++.|.+|+|+|+....+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            6999999999999999999999999999999876543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.77  E-value=7.5e-09  Score=103.23  Aligned_cols=138  Identities=28%  Similarity=0.355  Sum_probs=40.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhh----hhhHHHHHHHhhhhhCCccccccccC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL----HSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~----~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ||||||||+||++||..+++.|++|+|||+.+.+||+....+..+.....    .....+..+...+...+-........
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            89999999999999999999999999999999999987655543221111    12222333333322211100000011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EEe--cCCE---EEEEecCCceEEEEecEEEEccCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFI--SPSE---VSVDTIEGGNTVVKGKNIIIATGS  186 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~---~~v~~~~g~~~~i~~d~lvlAtG~  186 (477)
                      |........   ..+...+.+.+.+.+++++.++. ..+  +.++   +.+....| ..+++++.+|-|||-
T Consensus        81 ~~~~~~~~~---~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDP---EVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATGD  148 (428)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             ccccccccc---cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            100001111   11223344555677899887743 222  2222   23333334 678999999999994

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.77  E-value=1.2e-07  Score=80.70  Aligned_cols=133  Identities=17%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             EEECCChHHHHHHHHHHHC-----CCeEEEEecCCCCC-c-eeeccC------ccCchhhhhhhHHH-HHHHhhhhhCCc
Q 011787           47 VVIGGGPGGYVAAIKAAQL-----GLKTTCIEKRGALG-G-TCLNVG------CIPSKALLHSSHMY-HEAMHSFASHGV  112 (477)
Q Consensus        47 vIIGgG~AGl~aA~~l~~~-----g~~V~lie~~~~~G-G-~~~~~~------~~p~~~l~~~~~~~-~~~~~~~~~~g~  112 (477)
                      +|||+|++|++++.+|.+.     ..+|+|+|+.+. | | .+....      +.|...+....... ..+..++...+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~   79 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA   79 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence            5999999999999999987     468999999554 5 4 332211      01221111111000 112222222221


Q ss_pred             ----cccccccChHHHHHHHHHHHHHHHHHHHHHhhhCC--eEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEcc
Q 011787          113 ----KFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK--VTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIAT  184 (477)
Q Consensus       113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAt  184 (477)
                          ......+..+.++   .++++...+.+...+ ..+  |..+...+..++  .+...+.+.+|  ..+.+|+|||||
T Consensus        80 ~~~~~~~~~~f~pR~~~---G~YL~~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa~  153 (156)
T PF13454_consen   80 DEAEEIDPDDFPPRALF---GEYLRDRFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLAT  153 (156)
T ss_pred             ccccccccccCCCHHHH---HHHHHHHHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEECC
Confidence                1111111111111   112222222222222 233  555666666553  44567778888  778999999999


Q ss_pred             CC
Q 011787          185 GS  186 (477)
Q Consensus       185 G~  186 (477)
                      |.
T Consensus       154 Gh  155 (156)
T PF13454_consen  154 GH  155 (156)
T ss_pred             CC
Confidence            95

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.77  E-value=4.1e-07  Score=89.65  Aligned_cols=56  Identities=25%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+.+.|++++.+++|+++..+++.+.+...     ++ .+.+|.||+|+|...
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTA-----DG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeC-----CC-EEEeeEEEEecCcch
Confidence            455556666777889999999999999887776666543     33 789999999999753

>PRK06834 hypothetical protein; Provisional

Probab=98.76  E-value=6.5e-08  Score=98.01  Aligned_cols=145  Identities=17%  Similarity=0.236  Sum_probs=76.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCch--hhhhhhHHHHHHHhhhhhCC-ccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSK--ALLHSSHMYHEAMHSFASHG-VKFSSVE  118 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~--~l~~~~~~~~~~~~~~~~~g-~~~~~~~  118 (477)
                      ..+||+||||||+|+++|+.|++.|.+|+|+|+.+.....-....++...  .++........+........ ..+....
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR   81 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence            45899999999999999999999999999999976421000011112211  11111111122111000000 0000000


Q ss_pred             cChHHHH---HHH-HHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          119 VDLPAMM---AQK-DKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       119 ~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      +++..+.   ... .-....+.+.+.+.+++.++++..++ +..+  +.+.+.+...+|  .++++|+||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vVgADG~~S  156 (488)
T PRK06834         82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLVGCDGGRS  156 (488)
T ss_pred             cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCC
Confidence            1110000   000 00012233444555666788888773 3333  455677776666  5899999999999876

>PRK09126 hypothetical protein; Provisional

Probab=98.76  E-value=3.3e-07  Score=90.85  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             HHHHHHH-HhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          259 KQFQRSL-EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       259 ~~~~~~l-~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      +.+.+.+ +..|++++.++++++++.+++.+.+++.     +++++.+|.||.|.|..+...
T Consensus       114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~-----~g~~~~a~~vI~AdG~~S~vr  170 (392)
T PRK09126        114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLA-----NGRRLTARLLVAADSRFSATR  170 (392)
T ss_pred             HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEc-----CCCEEEeCEEEEeCCCCchhh
Confidence            3344443 4569999999999999887777777664     456899999999999887653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.76  E-value=3.5e-08  Score=85.33  Aligned_cols=39  Identities=44%  Similarity=0.704  Sum_probs=32.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      ++||+||||||||++||+.|++.|++|+++|++..+||-
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg   55 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG   55 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            589999999999999999999999999999998888764

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.76  E-value=1.1e-07  Score=95.28  Aligned_cols=96  Identities=19%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHcCCcEEEEEeCCCc---CCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc--C--CeEE-EEEee-
Q 011787          224 YIGLEMGSVWARLGSEVTVVEFAADI---VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS--G--DGVK-LTLEP-  294 (477)
Q Consensus       224 ~~g~e~a~~l~~~g~~Vtli~~~~~~---~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~--~~~~-v~~~~-  294 (477)
                      .++.|+...+.++=.++.-+.....+   -..-.+.+..-+.+.|+++||+|+++++|+++..+  +  +.++ +.+.. 
T Consensus       192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~  271 (576)
T PRK13977        192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN  271 (576)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence            68899988887662222111111111   01122578888999999999999999999999874  2  2232 44432 


Q ss_pred             cCCCceEEEEcCEEEEeecCCCCCC
Q 011787          295 AAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       295 ~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .....-...+.|.||+++|.-....
T Consensus       272 ~~~~~I~l~~~DlVivTnGs~t~ns  296 (576)
T PRK13977        272 GKEETIDLTEDDLVFVTNGSITESS  296 (576)
T ss_pred             CceeEEEecCCCEEEEeCCcCcccc
Confidence            1111223467999999999654443

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.74  E-value=6.3e-08  Score=97.89  Aligned_cols=140  Identities=24%  Similarity=0.357  Sum_probs=75.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-------hhhhhCCccccc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-------HSFASHGVKFSS  116 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-------~~~~~~g~~~~~  116 (477)
                      |||+|||||+||+.+|..+++.|.+|+|+|++...+|.|   +|.|+..-.......+.+.       ......++.+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~   77 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRV   77 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC---CccccccccccchhhhhhhcccchHHHHHHhhceehee
Confidence            699999999999999999999999999999975444432   3333322111111111100       000001111100


Q ss_pred             cccCh-HHHHHHHHHH-HHHHHHHHHHHhhhC-CeEEEEeEEEEe--c-C-CEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          117 VEVDL-PAMMAQKDKA-VSNLTRGIEGLFKKN-KVTYVKGYGKFI--S-P-SEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       117 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~-~v~~~~~~~~~~--~-~-~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      ...+. +.......+. ...+...+...+++. +++++.+.+..+  + . .-..|.+.+|  ..+.++.||+|||...
T Consensus        78 ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G--~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        78 LNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG--LKFRAKAVIITTGTFL  154 (617)
T ss_pred             cccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC--CEEECCEEEEccCccc
Confidence            00000 0000000000 112333344444444 788888877654  2 2 3345677777  5899999999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07121 hypothetical protein; Validated

Probab=98.72  E-value=5.5e-07  Score=91.83  Aligned_cols=44  Identities=41%  Similarity=0.575  Sum_probs=39.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      .++||||||+|.||++||+++++.|.+|+|+||....||.....
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~s   62 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALS   62 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccc
Confidence            46899999999999999999999999999999988888765443

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.72  E-value=5.1e-07  Score=89.91  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+.+.+++.|++++.++++.+++.+++++.+++.     +++++.+|+||.|.|..+..
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~vVgAdG~~S~v  170 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA-----DGRQLRAPLVVAADGANSAV  170 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCCCchh
Confidence            44556666777789999999999999888877777764     45689999999999987754

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.72  E-value=1.6e-07  Score=93.01  Aligned_cols=40  Identities=33%  Similarity=0.570  Sum_probs=35.7

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      |++..+||+|||||++|+++|..|++.|.+|+|||+.+..
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            4456789999999999999999999999999999997644

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.72  E-value=7.4e-07  Score=89.12  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+...+.+.+++.|++++++++|++++.+++++. ++.      ++.++.+|.||+|+|...
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t------~~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT------GGGVITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe------CCcEEeCCEEEECCCcch
Confidence            5666777788889999999999999987766654 332      234789999999999643

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.71  E-value=1.1e-07  Score=94.07  Aligned_cols=32  Identities=47%  Similarity=0.725  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      |||+||||||||++||+.|++.|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999999999999999996

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02697 lycopene epsilon cyclase

Probab=98.70  E-value=1.8e-07  Score=94.58  Aligned_cols=139  Identities=19%  Similarity=0.240  Sum_probs=73.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc-ccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEV  119 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~-~~~  119 (477)
                      ...+||+||||||||+++|..|++.|++|+|||+...+...+   + +....+.... ......+......+.... ...
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~---G-vW~~~l~~lg-l~~~i~~~w~~~~v~~~~~~~~  180 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFKDLG-LEDCIEHVWRDTIVYLDDDKPI  180 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc---c-cchhHHHhcC-cHHHHHhhcCCcEEEecCCcee
Confidence            346899999999999999999999999999999864443221   1 1111110000 000000000000000000 000


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEE-EEecCCceEEEEecEEEEccCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVS-VDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~-v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      .........  .-..+.+.+.....+.+++++...+..+.  .+... +...+|  .++.++.||.|+|...
T Consensus       181 ~~~~~Yg~V--~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG--~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        181 MIGRAYGRV--SRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDG--RVIPCRLATVASGAAS  248 (529)
T ss_pred             eccCcccEE--cHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCC--cEEECCEEEECCCcCh
Confidence            000000000  01123333444455678888777776653  23333 344556  6799999999999866

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.69  E-value=6.9e-07  Score=89.28  Aligned_cols=60  Identities=22%  Similarity=0.384  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          257 IRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       257 ~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      +.+.+.+.+.+. ++++++++++++++.+++.+.+++.+  +++..++++|+||.|.|..+..
T Consensus       123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~--~~~~~~i~adlvIgADG~~S~v  183 (415)
T PRK07364        123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEI--EGKQQTLQSKLVVAADGARSPI  183 (415)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEcc--CCcceEEeeeEEEEeCCCCchh
Confidence            445566656554 79999999999998887777777652  2233579999999999987755

>PRK08013 oxidoreductase; Provisional

Probab=98.69  E-value=7.9e-07  Score=88.27  Aligned_cols=58  Identities=16%  Similarity=0.277  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+.+.+++. |+++++++++++++.+++.+.+++.     +++++.+|+||-|.|..+..
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-----~g~~i~a~lvVgADG~~S~v  170 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLK-----DGSMLTARLVVGADGANSWL  170 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEc-----CCCEEEeeEEEEeCCCCcHH
Confidence            4555666666664 8999999999999887778877765     45689999999999987755

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.69  E-value=1.5e-06  Score=89.40  Aligned_cols=62  Identities=19%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.....++|++++++++|+++..+++++. +++.+..++++..+.+|.||.|+|...
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            45555666677888999999999999987766654 555443344456899999999999643

>PRK07190 hypothetical protein; Provisional

Probab=98.68  E-value=2.6e-07  Score=93.59  Aligned_cols=141  Identities=19%  Similarity=0.253  Sum_probs=75.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC--ceeeccCccC-chhhhhhhHHHHHHHhh---hhhC----
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--GTCLNVGCIP-SKALLHSSHMYHEAMHS---FASH----  110 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G--G~~~~~~~~p-~~~l~~~~~~~~~~~~~---~~~~----  110 (477)
                      +..+||+||||||+|+++|+.|++.|.+|+||||.+...  |.+.  +..| +..++............   ....    
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~--~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~   80 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD--ALNARTLQLLELVDLFDELYPLGKPCNTSSVWA   80 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccce--EeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence            345899999999999999999999999999999976542  2211  0111 11111111111111110   0000    


Q ss_pred             -C--cc-----ccccc-cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCCceEEEEec
Q 011787          111 -G--VK-----FSSVE-VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGK  178 (477)
Q Consensus       111 -g--~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g~~~~i~~d  178 (477)
                       +  +.     +.... ..........   ...+...+.+.+.+.++++..+. +..+  +.+.+.+...+|  .+++++
T Consensus        81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~---q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g--~~v~a~  155 (487)
T PRK07190         81 NGKFISRQSSWWEELEGCLHKHFLMLG---QSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNG--ERIQSR  155 (487)
T ss_pred             CCceEeeccccCccCCcCCCCceEecC---HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCC--cEEEeC
Confidence             0  00     00000 0000000000   01233334455566789988773 3333  455566666666  589999


Q ss_pred             EEEEccCCCC
Q 011787          179 NIIIATGSDV  188 (477)
Q Consensus       179 ~lvlAtG~~~  188 (477)
                      +||.|.|.+.
T Consensus       156 ~vVgADG~~S  165 (487)
T PRK07190        156 YVIGADGSRS  165 (487)
T ss_pred             EEEECCCCCH
Confidence            9999999875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.68  E-value=2.7e-08  Score=71.14  Aligned_cols=38  Identities=37%  Similarity=0.566  Sum_probs=34.3

Q ss_pred             EECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        48 IIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      |||||++|+++|+.|++.|.+|+|+|+++.+||.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   38 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF   38 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence            89999999999999999999999999999999976543

...

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.67  E-value=1.3e-07  Score=93.73  Aligned_cols=37  Identities=32%  Similarity=0.545  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ..++||+||||||+|+++|+.|++.|.+|+|+|+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            3468999999999999999999999999999999754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.66  E-value=2.5e-07  Score=96.21  Aligned_cols=147  Identities=23%  Similarity=0.295  Sum_probs=83.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc-Ccc-------Cc--hh------------------h
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-------PS--KA------------------L   93 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-------p~--~~------------------l   93 (477)
                      .++||+|||||.||++||.++++.|.+|+|+||....+|.+... +.+       +.  ..                  +
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv  107 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI  107 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            46899999999999999999999999999999977665433221 111       10  00                  0


Q ss_pred             hhhhHHHHHHHhhhhhCCccccccc---cC---hH--HH-------HHH----HHHHHHHHHHHHHHHhhhCCeEEEEeE
Q 011787           94 LHSSHMYHEAMHSFASHGVKFSSVE---VD---LP--AM-------MAQ----KDKAVSNLTRGIEGLFKKNKVTYVKGY  154 (477)
Q Consensus        94 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~---~~--~~-------~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~  154 (477)
                      ...........+++.++|+++....   +.   +.  ..       ..+    .+.....+...+.....+.+++++.++
T Consensus       108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~  187 (617)
T PTZ00139        108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY  187 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence            0111112234456677888763210   00   00  00       000    000122344444455556789988774


Q ss_pred             -EEE-e--cCCEEE-E---EecCCceEEEEecEEEEccCCCC
Q 011787          155 -GKF-I--SPSEVS-V---DTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       155 -~~~-~--~~~~~~-v---~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                       +.. +  +...+. +   ...+|....+.++.||||||+-.
T Consensus       188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence             332 2  233321 2   23466667889999999999764

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.66  E-value=2.8e-06  Score=86.75  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+...+....++.|++++.+++|+++..+++.+.+.+.+.. ++..++.++.||.|+|...
T Consensus       154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-GETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence            4556666667778899999999999999887766666665432 4446799999999999643

>PRK12839 hypothetical protein; Provisional

Probab=98.66  E-value=1.1e-06  Score=90.58  Aligned_cols=54  Identities=39%  Similarity=0.572  Sum_probs=46.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC---ccCchhh
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKAL   93 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~l   93 (477)
                      +..++||+|||+|.+|++||+.|++.|.+|+|+||...+||++...+   |.|...+
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~   61 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSL   61 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchh
Confidence            44579999999999999999999999999999999889999887766   4665544

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.66  E-value=1.3e-06  Score=90.09  Aligned_cols=60  Identities=20%  Similarity=0.362  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+.+.+.+.+.+ .|+++++++++++++.+++++.+++++. +++..++.+|+||-|.|...
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~-~G~~~~i~ad~vVgADG~~S  174 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA-DGQRETVRARYVVGCDGANS  174 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC-CCCEEEEEEEEEEecCCCch
Confidence            455556666665 4899999999999998888888877532 33346899999999999654

>PRK06126 hypothetical protein; Provisional

Probab=98.66  E-value=7.9e-07  Score=92.01  Aligned_cols=61  Identities=18%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+...+.+.+++ .++++++++++++++.+++++.+++.+..++...++.+|+||.|.|..+
T Consensus       127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             HHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence            345555666654 5899999999999998888888777654445556899999999999654

>PRK07588 hypothetical protein; Provisional

Probab=98.65  E-value=5.9e-07  Score=88.99  Aligned_cols=57  Identities=18%  Similarity=0.341  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      +.+.+.+.+. .+++++++++|++++.+++++.++++     +++.+++|+||-|.|..+..-
T Consensus       105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~d~vIgADG~~S~vR  161 (391)
T PRK07588        105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFE-----RGTPRDFDLVIGADGLHSHVR  161 (391)
T ss_pred             HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEEC-----CCCEEEeCEEEECCCCCccch
Confidence            3344444443 37999999999999988888877765     456789999999999877654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.65  E-value=7.7e-08  Score=94.32  Aligned_cols=135  Identities=19%  Similarity=0.189  Sum_probs=74.3

Q ss_pred             cEEEECCChHHHHHHHHH--HHCCCeEEEEecCCCC--CceeeccCccCchhhhhhhHHHHHH-HhhhhhCCcccccccc
Q 011787           45 DVVVIGGGPGGYVAAIKA--AQLGLKTTCIEKRGAL--GGTCLNVGCIPSKALLHSSHMYHEA-MHSFASHGVKFSSVEV  119 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l--~~~g~~V~lie~~~~~--GG~~~~~~~~p~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~  119 (477)
                      ||+||||||||+++|.+|  ++.|.+|+|||++...  ...+.+  |.....+..    +... .+.....-+.......
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW--~~~~~~~~~----~~~~v~~~w~~~~v~~~~~~~   74 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTW--CFWEKDLGP----LDSLVSHRWSGWRVYFPDGSR   74 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccc--ccccccccc----hHHHHheecCceEEEeCCCce
Confidence            899999999999999999  6679999999997766  343311  111111100    1111 1111111111111000


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      .... ..+..=.-..+.+.+.+.+...++.++...+..++..  ...+.+.+|  .+++++.||-|+|..+
T Consensus        75 ~~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   75 ILID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSS  142 (374)
T ss_pred             EEcc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccc
Confidence            0000 0000000112333344444456777888787776543  456778888  6899999999999554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.64  E-value=1.5e-06  Score=87.77  Aligned_cols=62  Identities=27%  Similarity=0.436  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+.+.+.+.+++.| ++++++++|++++.++++ +.+.+.+..++...++.++.||+|+|...
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            456777778888876 899999999999875553 55555422223334699999999999654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.64  E-value=8e-07  Score=90.67  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+..++.|++++.+++|+++..+++.+.+++.+..+++..++.++.||.|+|...
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            45555666677888999999999999987776666666543344456899999999999654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=4.9e-07  Score=93.92  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ..+...+.+.+++.||++++++.++++..++ +++. +...+..++....+.++.||+|||-
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            4566677777778899999999999987654 4444 4433333445568999999999984

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.62  E-value=1.7e-06  Score=86.20  Aligned_cols=55  Identities=15%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             HHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          259 KQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       259 ~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      ..+.+.+.+ .|++++.++++++++.+++.+.+++.     +++++.+|+||.|.|..+..
T Consensus       115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~lvIgADG~~S~v  170 (405)
T PRK08850        115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLD-----NGQALTAKLVVGADGANSWL  170 (405)
T ss_pred             HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEEC-----CCCEEEeCEEEEeCCCCChh
Confidence            344454544 47999999999999887777777765     45689999999999987654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.62  E-value=1.4e-06  Score=90.22  Aligned_cols=60  Identities=27%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      .+.+.+.+.+++. ++++++++++++++.+++++.+++...  ++..++.+|+||.|.|..+.
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~--~g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP--DGPYTLEADWVIACDGARSP  186 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC--CCcEEEEeCEEEECCCCCcH
Confidence            4445566666654 799999999999998888877766521  12247999999999996553

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.62  E-value=1.1e-06  Score=88.83  Aligned_cols=63  Identities=21%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+...+.+.+++.|++++++++|++++.++ +.+.+.+.+..++++.++.+|.||+|+|...
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            35677788888888999999999999998754 3455554432333345799999999999654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.61  E-value=2e-06  Score=86.34  Aligned_cols=63  Identities=24%  Similarity=0.398  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHH-hcCcEEEeCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 GEIRKQFQRSLE-KQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 ~~~~~~~~~~l~-~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      ..+.+.+.+.+. ..|++++++++|+.++.. ++.+.+.+.....+...++.+|.||+|.|....
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence            355666767775 458999999999999876 556666543212222236899999999997663

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.61  E-value=1.9e-06  Score=87.06  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +..+...+.+.+++.|++++.++.|++++. ++.+.+++.     + .++.+|.||+|+|..
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~-----~-g~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTP-----D-GQVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeC-----C-cEEECCEEEEccccc
Confidence            345667778888899999999999999975 334444432     3 369999999999854

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=8e-07  Score=92.20  Aligned_cols=40  Identities=28%  Similarity=0.419  Sum_probs=35.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      .++||||||+|.||++||.++++.|.+|+||||....+|.
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~   50 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH   50 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            4589999999999999999999999999999997655553

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.61  E-value=4.1e-06  Score=84.45  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHh----cC--cEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEK----QK--MKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~----~g--v~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+++    .|  ++++++++|++++..++ .+.+.+.     + .++.+|.||+|+|...
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~-----~-G~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTN-----R-GEIRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEEC-----C-CEEEeCEEEECcChhH
Confidence            3566777777777    67  88999999999987744 4455542     3 3799999999999654

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.60  E-value=1.8e-06  Score=85.35  Aligned_cols=59  Identities=20%  Similarity=0.354  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      ++...+.+.+.+.+ |+++.+++|+.++.+++.+.+++..    ++++++||+||-|-|.....
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~----dG~~~~a~llVgADG~~S~v  164 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF----DGETLDADLLVGADGANSAV  164 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcC----CCcEEecCEEEECCCCchHH
Confidence            56677777777665 9999999999999988888877752    44599999999999977654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=4.6e-07  Score=94.51  Aligned_cols=37  Identities=41%  Similarity=0.460  Sum_probs=34.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      ++||||||+|.||++||..+++.|.+|+||||....+
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            5899999999999999999999999999999976554

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.60  E-value=1.8e-06  Score=85.44  Aligned_cols=58  Identities=19%  Similarity=0.314  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+.+.+.+.| ++++.+++|++++.+++++.+++.     +++++.+|.||.|.|.....
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~~~vi~adG~~S~v  165 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLD-----DGQQLRARLLVGADGANSKV  165 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEEC-----CCCEEEeeEEEEeCCCCCHH
Confidence            45666777777777 999999999999887777777654     45679999999999987643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.59  E-value=4.7e-07  Score=94.29  Aligned_cols=39  Identities=36%  Similarity=0.516  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      .++||||||+|.||++||.++++.|.+|+||||....+|
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g   87 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS   87 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence            358999999999999999999999999999999766554

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.58  E-value=2.1e-06  Score=85.02  Aligned_cols=58  Identities=17%  Similarity=0.290  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+.+.+++. |++++.+++++++..+++++.+++.     ++.++.+|+||.|.|..+..
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~AdG~~S~v  171 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLA-----DGEEIQAKLVIGADGANSQV  171 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEEC-----CCCEEEeCEEEEeCCCCchh
Confidence            3445556666665 9999999999999877777777654     44689999999999988754

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.57  E-value=8.7e-07  Score=91.78  Aligned_cols=39  Identities=33%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      .++||||||+|.||++||.++++.|.+|+|+||....+|
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g   44 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS   44 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            358999999999999999999999999999999766654

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.57  E-value=1.4e-07  Score=88.29  Aligned_cols=48  Identities=44%  Similarity=0.725  Sum_probs=41.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC------CCeEEEEecCCCCCceeeccCcc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLNVGCI   88 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~~~~~   88 (477)
                      ...+||+|||||||||+||.+|+++      +.+|.|+||...+||+.+.-.++
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi  127 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI  127 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceee
Confidence            3579999999999999999999875      57899999999999987766554

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.57  E-value=4.5e-07  Score=91.25  Aligned_cols=39  Identities=38%  Similarity=0.602  Sum_probs=35.7

Q ss_pred             cEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceee
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCL   83 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~   83 (477)
                      ||||||+|.||++||.++++.| .+|+||||.+..||...
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~   40 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA   40 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence            7999999999999999999999 99999999888776543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.57  E-value=2.7e-06  Score=83.71  Aligned_cols=58  Identities=9%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      ++.+.+.+.+++. +++++.+++++++..+++++.+.+.     ++ ++.+|+||-|.|..+..-
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-----~~-~~~adlvIgADG~~S~vR  163 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFD-----DK-QIKCNLLIICDGANSKVR  163 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEc-----CC-EEeeCEEEEeCCCCchhH
Confidence            5566666666665 4899999999999888888777763     33 899999999999887653

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.56  E-value=1.1e-06  Score=90.80  Aligned_cols=43  Identities=33%  Similarity=0.604  Sum_probs=38.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--CCCceee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--ALGGTCL   83 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--~~GG~~~   83 (477)
                      ..++||||||+|.||++||..+++.|.+|+||||..  ..||...
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            356899999999999999999999999999999988  6777653

>PRK11445 putative oxidoreductase; Provisional

Probab=98.55  E-value=8.6e-07  Score=86.32  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ++||+||||||||+++|..|++. ++|+|+|+.+..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            47999999999999999999999 999999997643

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.54  E-value=1.1e-06  Score=87.06  Aligned_cols=36  Identities=39%  Similarity=0.528  Sum_probs=33.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ++||+||||||||+++|+.|++.|.+|+|+|++...
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            479999999999999999999999999999997654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.54  E-value=1.1e-06  Score=84.33  Aligned_cols=44  Identities=30%  Similarity=0.576  Sum_probs=40.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ....||+|||+|.+||+||..|.+.|++|+|+|.++++||.|..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t   48 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT   48 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence            45689999999999999999999999999999999999997643

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.54  E-value=2.8e-06  Score=78.11  Aligned_cols=165  Identities=18%  Similarity=0.177  Sum_probs=103.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----------C----------------------------CCH
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------S----------------------------MDG  255 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------~----------------------------~~~  255 (477)
                      .-+++|||+|+.|+-+|..+++.|.+|.+++++..+..          .                            ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            35799999999999999999999999999999865410          0                            012


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC--eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCcccc
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD--GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDKI  326 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~--~~~-v~~~~~------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~  326 (477)
                      ++.+.+.+...+.|++++.++.+.++..+++  ++. +.+...      ...+...+.++.||.|+|.......+..+..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            3445566667778999999999999887665  333 333211      0113468999999999996654322112222


Q ss_pred             ceeecC-----CCCeecCC-------CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcC
Q 011787          327 GVETDK-----MGRIPVNE-------RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAG  378 (477)
Q Consensus       327 gl~~~~-----~g~i~vd~-------~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~  378 (477)
                      ++....     .+..+.+.       +-+.-+|++|++|=.+    +.|...+  .+ ...|+.||+.|+.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence            221111     11222221       1123489999999876    3443222  23 3468888887764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.53  E-value=2.2e-06  Score=88.35  Aligned_cols=44  Identities=43%  Similarity=0.690  Sum_probs=40.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG   86 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~   86 (477)
                      ++||+|||+|.||++||..+++.|.+|+||||....||++...+
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~   49 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG   49 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceec
Confidence            68999999999999999999999999999999888898875554

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.53  E-value=4.4e-07  Score=90.13  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      |..+.-.......++|-.++..++|+.+..+++...+.+.+..++...++.++.||.|+|-..
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~  225 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV  225 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence            345555666677888999999999999998887455888777777888999999999999543

>PRK08244 hypothetical protein; Provisional

Probab=98.53  E-value=5.2e-07  Score=92.14  Aligned_cols=36  Identities=39%  Similarity=0.618  Sum_probs=33.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ++||+||||||+|+++|..|++.|.+|+||||.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            389999999999999999999999999999997643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.52  E-value=5.6e-07  Score=80.35  Aligned_cols=98  Identities=29%  Similarity=0.406  Sum_probs=68.2

Q ss_pred             EEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCcC--------------CC-C------------C---------------
Q 011787          218 VVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIV--------------PS-M------------D---------------  254 (477)
Q Consensus       218 ~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~--------------~~-~------------~---------------  254 (477)
                      +|||+|+.|+-+|..|.+.|.+ ++++++++.+.              |. +            .               
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999998 99999886542              00 0            0               


Q ss_pred             -HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC--CCCCCC
Q 011787          255 -GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR--TPFTAG  320 (477)
Q Consensus       255 -~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~--~p~~~~  320 (477)
                       +++.+.+++..++.++++.++++|+++..++++..+++.     ++.++.||.||+|+|.  .|+...
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~-----~~~~~~a~~VVlAtG~~~~p~~p~  144 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTR-----DGRTIRADRVVLATGHYSHPRIPD  144 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEET-----TS-EEEEEEEEE---SSCSB---S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEE-----ecceeeeeeEEEeeeccCCCCccc
Confidence             245567778888889999999999999999888888875     4478999999999996  555443

...

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.52  E-value=8.8e-07  Score=98.68  Aligned_cols=43  Identities=42%  Similarity=0.607  Sum_probs=38.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      +..+||||||+|.||++||..+++.|.+|+|+||....||...
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            3468999999999999999999999999999999888888653

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.50  E-value=2.6e-06  Score=84.59  Aligned_cols=61  Identities=8%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      ++.+.+.+.+.+ .++++++++++++++.+++++.+++...  ++++.+++|+||-|-|.....
T Consensus       108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~--~~~~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRT--NSVETVSAAYLIACDGVWSML  169 (400)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeC--CCCcEEecCEEEECCCccHhH
Confidence            455666666655 4899999999999988777877776532  234679999999999987755

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.50  E-value=3.1e-06  Score=85.83  Aligned_cols=99  Identities=24%  Similarity=0.369  Sum_probs=68.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.         |.     .                       +  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~~-----~-----------------------~--  210 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL---------PG-----E-----------------------D--  210 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC---------CC-----C-----------------------C--
Confidence            3689999999999999999999999999999854331         10     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+ .+..++  .+.+.+...+|...++.+|.||+|+|..|..
T Consensus       211 ----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~  271 (461)
T TIGR01350       211 ----------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT  271 (461)
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence                      001111234456678998877 344443  4455666555544579999999999999853

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.50  E-value=8.4e-06  Score=81.22  Aligned_cols=41  Identities=32%  Similarity=0.507  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEecCCCCCc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQL-GL-KTTCIEKRGALGG   80 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~-~V~lie~~~~~GG   80 (477)
                      ....+||+|||||.+|+++|++|++. |. +|+|+|++...+|
T Consensus        27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g   69 (407)
T TIGR01373        27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG   69 (407)
T ss_pred             CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence            34579999999999999999999985 85 9999999653333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.49  E-value=4.5e-06  Score=88.25  Aligned_cols=58  Identities=17%  Similarity=0.297  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      +..+...+.+.+++ |++++.+++|++++..++++.+.+.     ++..+.+|.||+|+|....
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~-----~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFA-----GGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEEC-----CCcEEECCEEEECCCCCcc
Confidence            34677777778878 9999999999999877777666543     4456789999999997643

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.47  E-value=6e-06  Score=76.15  Aligned_cols=166  Identities=19%  Similarity=0.203  Sum_probs=102.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------------------------------------C-CH
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------------M-DG  255 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------------------------------------~-~~  255 (477)
                      ...|+|||+|+.|+-+|..+++.|.+|.++++...+...                                     . ..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            357999999999999999999999999999987653210                                     0 12


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCccc--
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDK--  325 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-v~~~~~------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~--  325 (477)
                      ++...+.+...+.|++++.++.+.++..+++ ++. +.+...      ...+...+.++.||.|+|..........+.  
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            3445566667778999999999999876554 433 332210      112346899999999999654332110110  


Q ss_pred             -cceeecCCCCeecCC-------CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcCC
Q 011787          326 -IGVETDKMGRIPVNE-------RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAGK  379 (477)
Q Consensus       326 -~gl~~~~~g~i~vd~-------~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~~  379 (477)
                       .+.........+.+.       +-+--+|++|++|=.+    +.|...+  .+ ...|+.||+.|+.+
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~  253 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEK  253 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHH
Confidence             011111111222221       1112479999999877    3443222  23 34688888877643

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.46  E-value=8.4e-07  Score=87.07  Aligned_cols=96  Identities=22%  Similarity=0.372  Sum_probs=66.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC---------------CC--------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------MD--------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------------~~--------------------------  254 (477)
                      +|+|||||++|+-+|..+++.|.+|.++++++.+...               .+                          
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            5899999999999999999999999999999875310               00                          


Q ss_pred             ---------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcC
Q 011787          255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEAD  306 (477)
Q Consensus       255 ---------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D  306 (477)
                                                 .++.+.+.+.+++.||+++++++|.+++.++++ ..+.+.     ++..+.+|
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~-----~~~~~~a~  156 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK-----NGGEYEAD  156 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET-----TTEEEEES
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc-----CcccccCC
Confidence                                       356667778889999999999999999987777 566663     55799999


Q ss_pred             EEEEeecCCC
Q 011787          307 VVLVSAGRTP  316 (477)
Q Consensus       307 ~vi~a~G~~p  316 (477)
                      .||+|+|-..
T Consensus       157 ~vILAtGG~S  166 (409)
T PF03486_consen  157 AVILATGGKS  166 (409)
T ss_dssp             EEEE----SS
T ss_pred             EEEEecCCCC
Confidence            9999999654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.45  E-value=8.3e-07  Score=87.65  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4899999999999999999999999999999864

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.44  E-value=4.6e-06  Score=81.32  Aligned_cols=103  Identities=27%  Similarity=0.462  Sum_probs=81.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC-----------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-----------------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-----------------------------------------  254 (477)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+.+...                                         
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            589999999999999999999999999999876431100                                         


Q ss_pred             ----------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcC
Q 011787          255 ----------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD  306 (477)
Q Consensus       255 ----------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D  306 (477)
                                                  ..+.+.+.+.+++.|+++.+++++..++.+++++.+.+....++...++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                                        3456667777788899999999999999888888887776556666789999


Q ss_pred             EEEEeecCCCCC
Q 011787          307 VVLVSAGRTPFT  318 (477)
Q Consensus       307 ~vi~a~G~~p~~  318 (477)
                      +||-|.|.....
T Consensus       163 lvVgADG~~S~v  174 (356)
T PF01494_consen  163 LVVGADGAHSKV  174 (356)
T ss_dssp             EEEE-SGTT-HH
T ss_pred             eeecccCcccch
Confidence            999999988754

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.44  E-value=4.5e-06  Score=83.71  Aligned_cols=106  Identities=25%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------  251 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------  251 (477)
                      .++|+|||+|++|+-+|..|++.|.+|+++++++.+..                                          
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            58899999999999999999999999999998764311                                          


Q ss_pred             ---CCC---------------HHHHHHHHHHHHhcCcE--EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787          252 ---SMD---------------GEIRKQFQRSLEKQKMK--FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       252 ---~~~---------------~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                         ..+               .++.+.+++..+..|+.  +.++++|++++..++++.+++.+. .+...+..+|.||+|
T Consensus        90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~-~~~~~~~~~d~VIvA  168 (461)
T PLN02172         90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS-GGFSKDEIFDAVVVC  168 (461)
T ss_pred             CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC-CCceEEEEcCEEEEe
Confidence               000               34666677777778888  889999999988777777776531 112235789999999


Q ss_pred             ec--CCCCCCC
Q 011787          312 AG--RTPFTAG  320 (477)
Q Consensus       312 ~G--~~p~~~~  320 (477)
                      +|  ..|+...
T Consensus       169 tG~~~~P~~P~  179 (461)
T PLN02172        169 NGHYTEPNVAH  179 (461)
T ss_pred             ccCCCCCcCCC
Confidence            99  5676543

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.43  E-value=7.5e-07  Score=88.65  Aligned_cols=35  Identities=34%  Similarity=0.473  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~   77 (477)
                      ++||+||||||+|+++|..|++.|  .+|+|+|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            489999999999999999999995  99999999754

>PRK06185 hypothetical protein; Provisional

Probab=98.43  E-value=2.1e-05  Score=78.37  Aligned_cols=36  Identities=31%  Similarity=0.672  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..++||+|||||++|+++|..|++.|.+|+|+|+.+
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            346899999999999999999999999999999964

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.43  E-value=6e-07  Score=87.57  Aligned_cols=35  Identities=40%  Similarity=0.689  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +||+||||||||+++|..|++.|++|+|||+.+..
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            79999999999999999999999999999997654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.42  E-value=1.3e-05  Score=78.65  Aligned_cols=34  Identities=35%  Similarity=0.545  Sum_probs=31.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      +||+|||||.+|+++|++|++.|.+|+|+|++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999654

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.42  E-value=4.4e-06  Score=87.15  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEc--CCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +..+...+.+..++.|++++.+++|+++..+  ++++. +.+.+..+++..++.+|.||+|+|..
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw  295 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF  295 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence            4567777888889999999999999998765  34443 45543333444478999999999955

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.42  E-value=4e-06  Score=85.87  Aligned_cols=102  Identities=19%  Similarity=0.308  Sum_probs=80.5

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC--CCcC-----------C-CCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~~-----------~-~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ...+++|||||+.|+.+|..+++.|.+|+++...  ..+.           + ...+++.+.+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            3578999999999999999999999999998631  1111           0 123567777888888899999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .+++.+++...+++.     ++..+.+|.+|+|+|..|...
T Consensus       291 ~~I~~~~~~~~v~~~-----~g~~i~~d~lIlAtGa~~~~~  326 (515)
T TIGR03140       291 KKIETEDGLIVVTLE-----SGEVLKAKSVIVATGARWRKL  326 (515)
T ss_pred             EEEEecCCeEEEEEC-----CCCEEEeCEEEECCCCCcCCC
Confidence            999877666666654     445899999999999987543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.42  E-value=3.2e-06  Score=86.64  Aligned_cols=101  Identities=15%  Similarity=0.255  Sum_probs=80.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC--CCc--------CC----CCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADI--------VP----SMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~--------~~----~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ..+++|||||+.|+.+|..+++.|.+|+++...  ..+        ++    ...+++.+.+.+.+++.|+++++++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            458999999999999999999999999999753  111        01    1235777888889999999999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      ++...++...+.+.     ++..+.+|.+|+|+|.+|...
T Consensus       291 ~I~~~~~~~~V~~~-----~g~~i~a~~vViAtG~~~r~~  325 (517)
T PRK15317        291 KLEPAAGLIEVELA-----NGAVLKAKTVILATGARWRNM  325 (517)
T ss_pred             EEEecCCeEEEEEC-----CCCEEEcCEEEECCCCCcCCC
Confidence            99887666666654     445799999999999988653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.42  E-value=1.9e-06  Score=85.56  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      |+..+||+|||+|.+|+.+|..|.+.|++|+++|+++..||.+..
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as   45 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS   45 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence            455799999999999999999999999999999999999997653

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.41  E-value=8.4e-05  Score=77.20  Aligned_cols=44  Identities=43%  Similarity=0.591  Sum_probs=40.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG   86 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~   86 (477)
                      ++||+|||+|++|++||..+++.|++|+||||...+||++...+
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~   59 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSA   59 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccC
Confidence            68999999999999999999999999999999888998776554

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.41  E-value=9.1e-07  Score=86.43  Aligned_cols=36  Identities=28%  Similarity=0.632  Sum_probs=33.7

Q ss_pred             cEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCc
Q 011787           45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG   80 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG   80 (477)
                      ||+|||||+||+++|..|++.  |++|+|+|+.+..+|
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            799999999999999999987  999999999887776

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.41  E-value=1.8e-06  Score=79.44  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=37.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ...+|.|||+|.+||+||+.|.++ ++|+|+|.+..+||...
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~   47 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence            457899999999999999999987 89999999999999754

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.40  E-value=3.4e-07  Score=92.75  Aligned_cols=44  Identities=43%  Similarity=0.577  Sum_probs=40.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      .++||||||||++||+||..|++.|++|+|+||+..+||.+...
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~   45 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF   45 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence            46899999999999999999999999999999999999976543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.39  E-value=2e-06  Score=86.74  Aligned_cols=102  Identities=21%  Similarity=0.340  Sum_probs=74.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCc------CCCC-----C--HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI------VPSM-----D--GEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~------~~~~-----~--~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ++++|||+|+.|+.+|..|++.+.  +|+++++++.+      ++.+     +  .+......+.+++.|++++.++.|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            379999999999999999998764  89999998763      1111     1  1222233456778899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEE--cCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILE--ADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~--~D~vi~a~G~~p~~~~  320 (477)
                      +++.+++.+.+.-  ..  ++..++  +|.+|+|+|.+|+...
T Consensus        81 ~id~~~~~v~~~~--~~--~~~~~~~~yd~lviAtG~~~~~~~  119 (444)
T PRK09564         81 KVDAKNKTITVKN--LK--TGSIFNDTYDKLMIATGARPIIPP  119 (444)
T ss_pred             EEECCCCEEEEEE--CC--CCCEEEecCCEEEECCCCCCCCCC
Confidence            9987776655542  11  233455  9999999999987653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.39  E-value=9.5e-06  Score=81.60  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||++|+.+|..|++.|.+|+|+++.+.+..         .     ...                        
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------~-----~~~------------------------  198 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP---------R-----EEP------------------------  198 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC---------C-----CCH------------------------
Confidence            35899999999999999999999999999998543311         0     000                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                 .+.......+++.+++++.+ .+..++.  ..+.+.. ++  .++.+|.+|+|+|.+|.
T Consensus       199 -----------~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g--~~i~~D~viva~G~~p~  254 (438)
T PRK07251        199 -----------SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-ED--ETYRFDALLYATGRKPN  254 (438)
T ss_pred             -----------HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CC--eEEEcCEEEEeeCCCCC
Confidence                       01111234556678988876 4455543  3344433 44  57999999999999985

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.38  E-value=1.2e-06  Score=85.79  Aligned_cols=41  Identities=29%  Similarity=0.506  Sum_probs=37.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~   84 (477)
                      ++++|||||+|||+||++|++.+  .+|+|+|+.+++||....
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T   43 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT   43 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence            36999999999999999999998  999999999999996543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.38  E-value=4.6e-06  Score=84.63  Aligned_cols=99  Identities=23%  Similarity=0.384  Sum_probs=67.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||++|+.+|..|++.|.+|+|+++.+.+.         |.     .                       +  
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------~~-----~-----------------------~--  220 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------PT-----E-----------------------D--  220 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------Cc-----C-----------------------C--
Confidence            3689999999999999999999999999999854321         10     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEE-EEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEV-SVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~-~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+. +..++   .+.. .+...+|+..++.+|.+|+|+|.+|..
T Consensus       221 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        221 ----------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             ----------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence                      0011122345566789988774 44443   3333 333456655679999999999999863

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.38  E-value=1.6e-06  Score=86.02  Aligned_cols=34  Identities=35%  Similarity=0.594  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC---CCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~   75 (477)
                      .++||+||||||||+++|+.|++.   |.+|+|+|+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            468999999999999999999998   9999999995

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.37  E-value=2.7e-06  Score=84.26  Aligned_cols=99  Identities=10%  Similarity=0.162  Sum_probs=72.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCc---CCCCCHHHH---------HHHHHHHHhcCcEEEeCceEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI---VPSMDGEIR---------KQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~---~~~~~~~~~---------~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .++++|||||+.|+.+|..|++.+.  +|+++.+.+..   .+.+.+.+.         ..-.+.+.+.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4679999999999999999999876  78999876543   122222211         001244667899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .++.++..  +.+.     ++.++.+|.+|+|||.+|+..
T Consensus        83 ~id~~~~~--v~~~-----~g~~~~yd~LViATGs~~~~~  115 (396)
T PRK09754         83 TLGRDTRE--LVLT-----NGESWHWDQLFIATGAAARPL  115 (396)
T ss_pred             EEECCCCE--EEEC-----CCCEEEcCEEEEccCCCCCCC
Confidence            99766543  3333     456899999999999998653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.37  E-value=2.4e-06  Score=84.66  Aligned_cols=35  Identities=26%  Similarity=0.554  Sum_probs=32.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ++||+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999764

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.37  E-value=4.5e-07  Score=90.97  Aligned_cols=44  Identities=32%  Similarity=0.565  Sum_probs=40.2

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      .....++|+|||||+|||+||.+|.+.|++|+|+|.++++||..
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI   54 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI   54 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence            34556899999999999999999999999999999999999864

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.37  E-value=2.3e-06  Score=84.54  Aligned_cols=35  Identities=23%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=5.1e-07  Score=88.01  Aligned_cols=143  Identities=25%  Similarity=0.372  Sum_probs=76.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchh------hhhhhHHHHH-HHhhhhhCCcc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA------LLHSSHMYHE-AMHSFASHGVK  113 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~------l~~~~~~~~~-~~~~~~~~g~~  113 (477)
                      +..|||+|||||+||+.||...+|.|.+++|+--+-..=|.   -+|-|+--      +........- +-......++.
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~---msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ   78 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE---MSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQ   78 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee---cccccccCCcccceeEEeehhccchHHHhhhhcCCc
Confidence            34599999999999999999999999999998765332221   23333210      1110000000 00111122333


Q ss_pred             ccccccCh-HHHHHHHHHHHH-HHHHHHHH-HhhhCCeEEEEeEEEEe--cCC--EEEEEecCCceEEEEecEEEEccCC
Q 011787          114 FSSVEVDL-PAMMAQKDKAVS-NLTRGIEG-LFKKNKVTYVKGYGKFI--SPS--EVSVDTIEGGNTVVKGKNIIIATGS  186 (477)
Q Consensus       114 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~--~~~--~~~v~~~~g~~~~i~~d~lvlAtG~  186 (477)
                      +.-++..- +.......+..+ .+...... .....+++++++.+..+  ..+  -..|.+.+|  ..+.++.|||+||+
T Consensus        79 ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--~~~~a~aVVlTTGT  156 (621)
T COG0445          79 FRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--PEFHAKAVVLTTGT  156 (621)
T ss_pred             hhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--CeeecCEEEEeecc
Confidence            22111110 011111111111 12222222 33345888888877553  233  356778888  89999999999997


Q ss_pred             CC
Q 011787          187 DV  188 (477)
Q Consensus       187 ~~  188 (477)
                      --
T Consensus       157 FL  158 (621)
T COG0445         157 FL  158 (621)
T ss_pred             cc
Confidence            43

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.35  E-value=1.7e-06  Score=85.53  Aligned_cols=33  Identities=36%  Similarity=0.662  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCC-CeEEEEecCCC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGA   77 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~   77 (477)
                      ||+||||||||+++|..|++.| ++|+|+|+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            7999999999999999999999 99999999654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.35  E-value=1.5e-05  Score=82.55  Aligned_cols=40  Identities=48%  Similarity=0.758  Sum_probs=37.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      .++||||||+|.||++||+.+++.|.+|+|+||....||.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            3689999999999999999999999999999998888874

>PRK06996 hypothetical protein; Provisional

Probab=98.34  E-value=2.3e-06  Score=84.96  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=33.1

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCC----CeEEEEecCC
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLG----LKTTCIEKRG   76 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g----~~V~lie~~~   76 (477)
                      |.+..+||+||||||+|+++|..|++.|    ++|+|+|+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            4455689999999999999999999986    5799999964

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.33  E-value=1.7e-05  Score=79.71  Aligned_cols=59  Identities=15%  Similarity=0.344  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhc---CcEEEeCceEEEEEEc-------CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          256 EIRKQFQRSLEKQ---KMKFMLKTKVVGVDLS-------GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       256 ~~~~~~~~~l~~~---gv~~~~~~~v~~i~~~-------~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .+...+.+.+++.   +++++.++++.+++.+       ++++.+++.     +++++.+|+||-|-|.....-
T Consensus       118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~-----~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLS-----DGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEc-----CCCEEEeeEEEEecCCCChhH
Confidence            4445556666665   4999999999999642       345666664     457899999999999887653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07236 hypothetical protein; Provisional

Probab=98.33  E-value=3.1e-06  Score=83.70  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..++|+|||||++|+++|..|++.|.+|+|+||.+
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            35899999999999999999999999999999975

>PRK06753 hypothetical protein; Provisional

Probab=98.32  E-value=1.9e-06  Score=84.89  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=32.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +||+|||||+||+++|..|++.|++|+|+|+++.+
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            37999999999999999999999999999997754

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.32  E-value=3.7e-05  Score=80.44  Aligned_cols=37  Identities=30%  Similarity=0.592  Sum_probs=33.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG   76 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~   76 (477)
                      |..++||+||||||+|+++|+.|++. |.+|+|||+.+
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            45578999999999999999999995 99999999964

>PLN02985 squalene monooxygenase

Probab=98.31  E-value=4.1e-06  Score=85.33  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ...+||+|||||++|+++|..|++.|.+|+|+||..
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            446899999999999999999999999999999964

>PRK07208 hypothetical protein; Provisional

Probab=98.31  E-value=8.2e-07  Score=90.48  Aligned_cols=45  Identities=31%  Similarity=0.560  Sum_probs=41.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      |+.++||+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s   45 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT   45 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence            456789999999999999999999999999999999999997643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.28  E-value=8.3e-06  Score=81.88  Aligned_cols=104  Identities=17%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC--C-CCCHH-------HHHHH----HHHHHhcCcEEEeCceE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--P-SMDGE-------IRKQF----QRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~-~~~~~-------~~~~~----~~~l~~~gv~~~~~~~v  278 (477)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++.+.+.  + .++.-       ..+.+    .+..++.|++++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999877  56899999987531  1 11110       01111    23335679999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .+|+.+++.+.+..  ...++..++++|.+|+|||.+|+...
T Consensus        82 ~~Id~~~~~v~~~~--~~~~~~~~~~yd~lviAtGs~~~~~~  121 (438)
T PRK13512         82 IAINDERQTVTVLN--RKTNEQFEESYDKLILSPGASANSLG  121 (438)
T ss_pred             EEEECCCCEEEEEE--CCCCcEEeeecCEEEECCCCCCCCCC
Confidence            99987776555542  22223345789999999999997654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.27  E-value=1.2e-05  Score=76.25  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=77.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------------------------------C-
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------S-  252 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------~-  252 (477)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+....                                          . 
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            489999999999999999999999999998864210                                          0 


Q ss_pred             ------C-CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          253 ------M-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       253 ------~-~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                            + ...+.+.+.+.+++.|++++.+++++++..+++++.+.+..    ++.++++|.||.|+|....
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG----GEGTVTAKIVIGADGSRSI  149 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC----ccEEEEeCEEEECCCcchH
Confidence                  0 12455667777788899999999999998877777666542    3468999999999998754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.27  E-value=2.7e-05  Score=77.02  Aligned_cols=39  Identities=44%  Similarity=0.481  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      +.++||+|||||.+|+++|++|++.|.+|+++|++...+
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            346899999999999999999999999999999966544

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.26  E-value=5.7e-05  Score=73.13  Aligned_cols=97  Identities=28%  Similarity=0.463  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceee-cC
Q 011787          256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET-DK  332 (477)
Q Consensus       256 ~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~-~~  332 (477)
                      .+.+.+.+.+.+. |++++++++|++|+..+++ ..+.+.+..+++..++.++.|++..|-..-.-   +++.|++- ..
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L---Lqksgi~e~~g  258 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL---LQKSGIPEGKG  258 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH---HHHcCChhhcc
Confidence            5666677777777 9999999999999988665 77888777777888999999999988654332   66677642 22


Q ss_pred             CCCeecC-CCCCCCCC--------CeEEeccc
Q 011787          333 MGRIPVN-ERFATNIP--------GVYAIGDV  355 (477)
Q Consensus       333 ~g~i~vd-~~l~t~~~--------~vya~GD~  355 (477)
                      -|+.+|. .++.+..|        -||..-++
T Consensus       259 yggfPVsG~fl~~~n~~vv~~H~aKVYgka~v  290 (488)
T PF06039_consen  259 YGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV  290 (488)
T ss_pred             cCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence            3445554 34565544        36765544

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07236 hypothetical protein; Provisional

Probab=98.25  E-value=7.7e-06  Score=80.86  Aligned_cols=100  Identities=23%  Similarity=0.334  Sum_probs=74.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC------CCHHHHHHHH-------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRKQFQ-------------------------  262 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~~~-------------------------  262 (477)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.+...+.      +.+...+.+.                         
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            478999999999999999999999999999988754221      2232222222                         


Q ss_pred             ------------------HHHHh--cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          263 ------------------RSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       263 ------------------~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                                        +.|.+  .++.++.++++++++.+++++.+++.     +++++.+|+||.|-|..+..
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFA-----DGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEEC-----CCCEEEeCEEEECCCCCchH
Confidence                              11111  13568889999999888888887775     45689999999999987755

>PRK06834 hypothetical protein; Provisional

Probab=98.25  E-value=1.6e-05  Score=80.63  Aligned_cols=99  Identities=19%  Similarity=0.312  Sum_probs=77.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---C---CCC----------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---P---SMD----------------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~---~~~----------------------------------  254 (477)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   +   .+.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            469999999999999999999999999999875421   0   000                                  


Q ss_pred             ----------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          255 ----------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       255 ----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                                      ..+.+.+.+.+++.|+++++++++++++.+++++.+++.     ++.++.+|+||.|.|..+..
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~-----~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELS-----DGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCCCCCc
Confidence                            123334455667779999999999999988888877764     34589999999999987754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.25  E-value=1.4e-06  Score=84.35  Aligned_cols=43  Identities=35%  Similarity=0.584  Sum_probs=39.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      ++|++|||||+||+++|.+|++.|.+|+|+|+++.+||.|...
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~   43 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE   43 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence            3799999999999999999999999999999999999987653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.24  E-value=7.6e-06  Score=81.79  Aligned_cols=106  Identities=20%  Similarity=0.273  Sum_probs=76.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--CCC---------CHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--PSM---------DGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      .++|+|||||+.|+.+|..|.+.+.+|++|++++.+.  |.+         ..++...+.+.++..+++++ ..+|++|+
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id   88 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYL-RAVVYDVD   88 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEE-EEEEEEEE
Confidence            4689999999999999999876678999999887652  111         12233334556667788877 56899998


Q ss_pred             EcCCeEEEEEeecC---CCceEEEEcCEEEEeecCCCCCCC
Q 011787          283 LSGDGVKLTLEPAA---GGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       283 ~~~~~~~v~~~~~~---~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .+++.+.+......   +.++.++++|.+|+|+|..|+...
T Consensus        89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~  129 (424)
T PTZ00318         89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN  129 (424)
T ss_pred             cCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence            87777666332110   135568999999999999987543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.22  E-value=2.2e-05  Score=58.36  Aligned_cols=34  Identities=47%  Similarity=0.537  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +++|||||+.|+.+|..|++.|.+|+|+++.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5899999999999999999999999999996654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.21  E-value=2.8e-06  Score=75.69  Aligned_cols=105  Identities=24%  Similarity=0.402  Sum_probs=74.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---CCCC-----------HHHH--H--HHHHHHHhcCcEEEeCce
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---PSMD-----------GEIR--K--QFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~~~~-----------~~~~--~--~~~~~l~~~gv~~~~~~~  277 (477)
                      +|+|||||+.|+.+|..|++.+.+++++++.+...   ..+.           ....  .  .+.+.+...+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            58999999999999999999999999997665321   0000           0011  1  344455678999999999


Q ss_pred             EEEEEEcCCeEE---EEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          278 VVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       278 v~~i~~~~~~~~---v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.+++...+.+.   +.+.....+++.++.+|.+|+|+|..|+...
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~  126 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN  126 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence            999988777431   1111112346789999999999998887654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.21  E-value=2.1e-05  Score=79.90  Aligned_cols=98  Identities=21%  Similarity=0.242  Sum_probs=66.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||+|+.|+.+|..|++.|.+|+|+++.+.+...      .                               +   
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------~-------------------------------d---  223 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------A-------------------------------D---  223 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------C-------------------------------C---
Confidence            68999999999999999999999999999985433100      0                               0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecC--CceEEEEecEEEEccCCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE--GGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~--g~~~~i~~d~lvlAtG~~~~~  190 (477)
                               ..+.......+++.+++++.+ .+..++  ...+.+...+  |+...+.+|.|++|+|.+|..
T Consensus       224 ---------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        224 ---------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             ---------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence                     001111223455678888876 444443  3344454332  444679999999999999863

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.17  E-value=7.6e-06  Score=80.24  Aligned_cols=97  Identities=25%  Similarity=0.381  Sum_probs=71.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcC--CCCC---------HHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIV--PSMD---------GEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~--~~~~---------~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +|+|||||+.|+.+|..+.+.   +.+|+++++++...  +.++         .++...+.+.+++.|++++.+ +|+++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            489999999999999998643   57899999887641  1111         223334456677789999864 89999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.+++.  +.+.     +++++.+|.+|+|+|..|+...
T Consensus        80 d~~~~~--V~~~-----~g~~~~yD~LviAtG~~~~~~~  111 (364)
T TIGR03169        80 DPDRRK--VLLA-----NRPPLSYDVLSLDVGSTTPLSG  111 (364)
T ss_pred             ecccCE--EEEC-----CCCcccccEEEEccCCCCCCCC
Confidence            776654  3333     4567999999999999997654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.17  E-value=1.6e-05  Score=79.70  Aligned_cols=58  Identities=26%  Similarity=0.461  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      ..+.+.+.+...+.||+++.++ |..+..++++.  .+++.     +++++++|.+|-|+|++...
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~-----~g~~i~ad~~IDASG~~s~L  213 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLD-----DGRTIEADFFIDASGRRSLL  213 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEET-----TSEEEEESEEEE-SGGG-CC
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEEC-----CCCEEEEeEEEECCCccchh
Confidence            3566777888888999999874 77776665543  34443     56899999999999987654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05868 hypothetical protein; Validated

Probab=98.17  E-value=1.1e-05  Score=79.09  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +.||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            358999999999999999999999999999997654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.17  E-value=2.4e-05  Score=77.49  Aligned_cols=100  Identities=21%  Similarity=0.344  Sum_probs=77.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-----C-----CCC-----------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----P-----SMD-----------------------------  254 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-----~-----~~~-----------------------------  254 (477)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+..-     +     .+.                             
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            3579999999999999999999999999999864210     0     000                             


Q ss_pred             ---------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787          255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV  307 (477)
Q Consensus       255 ---------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~  307 (477)
                                                 ..+.+.+.+.+++.|++++.++++++++.+++++.+++.     ++.++.+|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~  160 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLD-----DGRRLEAAL  160 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEEC-----CCCEEEeCE
Confidence                                       123344555667789999999999999888777777664     446899999


Q ss_pred             EEEeecCCCCC
Q 011787          308 VLVSAGRTPFT  318 (477)
Q Consensus       308 vi~a~G~~p~~  318 (477)
                      ||.|.|..+..
T Consensus       161 vV~AdG~~S~v  171 (392)
T PRK08773        161 AIAADGAASTL  171 (392)
T ss_pred             EEEecCCCchH
Confidence            99999998864

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=98.16  E-value=2.4e-05  Score=74.23  Aligned_cols=97  Identities=25%  Similarity=0.351  Sum_probs=74.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--------------CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--------------GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS  109 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--------------g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~  109 (477)
                      -.+|||||||.|...|.+|+..              ..+|+++|..+.+                  -..+         
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------------L~mF---------  271 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------------LNMF---------  271 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------------HHHH---------
Confidence            5799999999999999999853              3578888873211                  0000         


Q ss_pred             CCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          110 HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                                            -+.+....++.+.+.++++..+ .+..+.+..+.+.+.+|+..++.|--||=|||..+
T Consensus       272 ----------------------dkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~  329 (491)
T KOG2495|consen  272 ----------------------DKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGP  329 (491)
T ss_pred             ----------------------HHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCC
Confidence                                  1223444567788889999998 46778999999998899889999999999999887


Q ss_pred             C
Q 011787          189 K  189 (477)
Q Consensus       189 ~  189 (477)
                      +
T Consensus       330 r  330 (491)
T KOG2495|consen  330 R  330 (491)
T ss_pred             c
Confidence            5

>PRK08244 hypothetical protein; Provisional

Probab=98.16  E-value=3.2e-05  Score=79.01  Aligned_cols=100  Identities=24%  Similarity=0.403  Sum_probs=77.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CC-----------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD-----------------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~-----------------------------------  254 (477)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...+.     +.                                   
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            36999999999999999999999999999987643100     00                                   


Q ss_pred             -----------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 -----------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 -----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                                       ..+.+.+.+.+++.|++++.++++++++.+++++.+++.+. ++ ..++.+|+||.|.|..+
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~-~g-~~~i~a~~vVgADG~~S  159 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGP-DG-LRTLTSSYVVGADGAGS  159 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeC-Cc-cEEEEeCEEEECCCCCh
Confidence                             12344555666778999999999999988888887776531 11 35799999999999775

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.13  E-value=1.1e-05  Score=80.57  Aligned_cols=36  Identities=31%  Similarity=0.473  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG   79 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~G   79 (477)
                      .+|+|||||+||+++|..|++.| .+|+|+||.+.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            36999999999999999999998 5999999977653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02568 polyamine oxidase

Probab=98.13  E-value=3.5e-06  Score=86.06  Aligned_cols=46  Identities=26%  Similarity=0.386  Sum_probs=40.8

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCC-----CeEEEEecCCCCCceeec
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g-----~~V~lie~~~~~GG~~~~   84 (477)
                      ||+...||+|||||+||++||..|++.|     ++|+|+|+++.+||.+..
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t   51 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT   51 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence            3555689999999999999999999887     899999999999998654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.13  E-value=5.3e-05  Score=72.87  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC---c--------CCC-----CCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPS-----MDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~-----~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      ..++++|||+|+.|+.+|..+.+.|.++++++....   +        +|.     ..+++.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            357899999999999999999999999998864321   1        111     11345666677777777877664 


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .+..++..++.+.+...      ...+.+|.||+|+|..|+...
T Consensus        84 ~v~~v~~~~~~~~v~~~------~~~~~~d~vilAtG~~~~~~~  121 (321)
T PRK10262         84 HINKVDLQNRPFRLTGD------SGEYTCDALIIATGASARYLG  121 (321)
T ss_pred             EEEEEEecCCeEEEEec------CCEEEECEEEECCCCCCCCCC
Confidence            56677766665555431      236899999999999987543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.13  E-value=5.5e-05  Score=65.47  Aligned_cols=165  Identities=17%  Similarity=0.213  Sum_probs=100.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCC-------------------------------H
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------G  255 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~-------------------------------~  255 (477)
                      -..|+|+|+|++|+.+|..|++.|.+|.+++++-.+..       .|+                               .
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            45799999999999999999999999999999876521       111                               1


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCccc--
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDK--  325 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-v~~~~~------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~--  325 (477)
                      ++...+....-+.|.+++....|..+-..++ ++. +.+...      .--+...++++.|+-+||.....-.+..+.  
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence            2333333333456899998999988766655 444 332210      011446889999999999665432211111  


Q ss_pred             -cceeecCCCCeecC--C-----CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcC
Q 011787          326 -IGVETDKMGRIPVN--E-----RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAG  378 (477)
Q Consensus       326 -~gl~~~~~g~i~vd--~-----~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~  378 (477)
                       .++++......+.+  +     +-+.-.||+|++|=.+    +.|...+  .+ ...|+.||+.++.
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e  257 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE  257 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence             12222222223322  1     1233589999999766    3343222  23 3467888877754

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.12  E-value=1.3e-05  Score=77.53  Aligned_cols=99  Identities=25%  Similarity=0.397  Sum_probs=78.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcC--CCC---------CHHHHHHHHHHHHhcC-cEEEeCceEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--PSM---------DGEIRKQFQRSLEKQK-MKFMLKTKVV  279 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~g-v~~~~~~~v~  279 (477)
                      .++++|+|||+-|+.++..|.+.-  .+||++++++..+  |.+         +.++...+.+.+++.+ +++. ..+|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~-~~~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFV-QGEVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEE-EEEEE
Confidence            578999999999999999998874  8899999988762  211         2445556777888555 8887 46899


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +|+.++..+.+.       ++..+++|.+|+++|..++...
T Consensus        82 ~ID~~~k~V~~~-------~~~~i~YD~LVvalGs~~~~fg  115 (405)
T COG1252          82 DIDRDAKKVTLA-------DLGEISYDYLVVALGSETNYFG  115 (405)
T ss_pred             EEcccCCEEEeC-------CCccccccEEEEecCCcCCcCC
Confidence            998877766654       4578999999999999998865

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.12  E-value=3.4e-05  Score=76.76  Aligned_cols=98  Identities=23%  Similarity=0.383  Sum_probs=75.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCCC-----------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVPS-----------------------------------------  252 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~-----------------------------------------  252 (477)
                      +|+|||||+.|+-+|..|++.|  .+|+++++.+...+.                                         
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  899999986431000                                         


Q ss_pred             ---------C-----------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcC
Q 011787          253 ---------M-----------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD  306 (477)
Q Consensus       253 ---------~-----------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D  306 (477)
                               +                 ...+.+.+.+.+.+.|++++.+++|++++.+++.+.+++.     ++.++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad  157 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLS-----DGSVLEAR  157 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEEC-----CCCEEEeC
Confidence                     0                 0123445556667779999999999999888777777764     45689999


Q ss_pred             EEEEeecCCCCC
Q 011787          307 VVLVSAGRTPFT  318 (477)
Q Consensus       307 ~vi~a~G~~p~~  318 (477)
                      .||.|.|..+..
T Consensus       158 ~vI~AdG~~S~v  169 (403)
T PRK07333        158 LLVAADGARSKL  169 (403)
T ss_pred             EEEEcCCCChHH
Confidence            999999987754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.12  E-value=3.8e-05  Score=73.67  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             HHHcCCcEEEEE-eCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEE
Q 011787          233 WARLGSEVTVVE-FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLV  310 (477)
Q Consensus       233 l~~~g~~Vtli~-~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~  310 (477)
                      +...|+...++. +.+++....-+.+.+.+.+.+++.|++++++++|.+++..++.+. +.++     ++.++++|.||+
T Consensus       150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-----~g~~i~~~~vvl  224 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLT-----KGEEIEADYVVL  224 (486)
T ss_pred             HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEcc-----CCcEEecCEEEE
Confidence            344455554443 334444455678889999999999999999999999988777543 4443     678999999999


Q ss_pred             eecCCCCCC
Q 011787          311 SAGRTPFTA  319 (477)
Q Consensus       311 a~G~~p~~~  319 (477)
                      |+|+....+
T Consensus       225 A~Grsg~dw  233 (486)
T COG2509         225 APGRSGRDW  233 (486)
T ss_pred             ccCcchHHH
Confidence            999876543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.12  E-value=1.4e-05  Score=85.77  Aligned_cols=99  Identities=15%  Similarity=0.237  Sum_probs=72.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc----CCcEEEEEeCCCcC--C-CCC--------HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIV--P-SMD--------GEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~----g~~Vtli~~~~~~~--~-~~~--------~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ++|+|||+|+.|+.+|..|.+.    +.+||++.+.+.+.  + .+.        .++.....+.+++.||+++.++.|.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            5899999999999999999765    36899999887642  1 111        1222223456778899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++.+..  .+.+.     ++..+.+|.+|+|||..|+...
T Consensus        84 ~Id~~~~--~V~~~-----~G~~i~yD~LVIATGs~p~~p~  117 (847)
T PRK14989         84 TINRQEK--VIHSS-----AGRTVFYDKLIMATGSYPWIPP  117 (847)
T ss_pred             EEeCCCc--EEEEC-----CCcEEECCEEEECCCCCcCCCC
Confidence            9976543  33332     4568999999999999987654

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.12  E-value=3.1e-05  Score=71.24  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      |....|++|||+|.-|+++|++|++.|.++.++|+.+.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~   41 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL   41 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence            44568999999999999999999999999999999553

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.12  E-value=3.2e-05  Score=76.17  Aligned_cols=98  Identities=14%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCc---CCCCC---------HHHHH-HHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADI---VPSMD---------GEIRK-QFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~---~~~~~---------~~~~~-~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ++++|||+|+.|+.+|..+++.+  .+|+++.+.+..   .+.+.         .++.. ...+.+++.|++++.+++|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            57999999999999999998764  478999887643   12221         11111 13345577899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +++.++..+  .+      ++..+.+|.+|+|||.+|....
T Consensus        83 ~id~~~~~v--~~------~~~~~~yd~LVlATG~~~~~p~  115 (377)
T PRK04965         83 DIDAEAQVV--KS------QGNQWQYDKLVLATGASAFVPP  115 (377)
T ss_pred             EEECCCCEE--EE------CCeEEeCCEEEECCCCCCCCCC
Confidence            997655433  32      3468999999999999987654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.11  E-value=3.2e-06  Score=85.51  Aligned_cols=41  Identities=34%  Similarity=0.525  Sum_probs=37.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~   84 (477)
                      ++|+|||||+|||+||+.|++.|  ++|+|+|+++.+||.+..
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t   43 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT   43 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence            36999999999999999999987  899999999999997643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.11  E-value=3e-05  Score=78.42  Aligned_cols=97  Identities=21%  Similarity=0.322  Sum_probs=65.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||++|+.+|..|.+.|.+|+|+++.+.+.         |.     .                       +  
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------~~-----~-----------------------d--  210 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------PG-----E-----------------------D--  210 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------cc-----c-----------------------c--
Confidence            3589999999999999999999999999999854321         00     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCC--EEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+++++.+. +..++..  .+.+. .+++..++.+|.|++|+|.+|.
T Consensus       211 ----------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~-~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        211 ----------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFE-YEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEE-ECCceEEEEeCEEEEecCCccC
Confidence                      0011122345566789988873 4445432  23333 2343457999999999999885

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.11  E-value=8.9e-06  Score=79.61  Aligned_cols=36  Identities=39%  Similarity=0.375  Sum_probs=32.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      .||+|||||+||+.||..|++.|.+|+|+|+++..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            479999999999999999999999999999866543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.10  E-value=1.5e-05  Score=86.57  Aligned_cols=93  Identities=24%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+||++++.+.+.       |  .++.++.+...+.+++.||+|.+++.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            47999999999999999999999999999999987552       2  34667777777888999999998875521   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT  318 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~  318 (477)
                           .+++.     +.....+|.|++|+|.. |..
T Consensus       382 -----dit~~-----~l~~~~yDAV~LAtGA~~pr~  407 (944)
T PRK12779        382 -----TATLE-----DLKAAGFWKIFVGTGAGLPTF  407 (944)
T ss_pred             -----EEeHH-----HhccccCCEEEEeCCCCCCCc
Confidence                 23322     22345799999999984 554

>PLN02268 probable polyamine oxidase

Probab=98.10  E-value=3.7e-06  Score=84.60  Aligned_cols=41  Identities=37%  Similarity=0.558  Sum_probs=38.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      .+|+|||||.|||+||+.|.+.|++|+|+|+++++||.+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t   41 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT   41 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence            37999999999999999999999999999999999998643

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.10  E-value=3.5e-06  Score=85.48  Aligned_cols=42  Identities=31%  Similarity=0.474  Sum_probs=38.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC----CCeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~   84 (477)
                      ++||+|||||++||+||+.|++.    |++|+|+|+++.+||.+..
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t   47 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT   47 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence            36899999999999999999998    9999999999999998754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.10  E-value=3.1e-05  Score=77.68  Aligned_cols=97  Identities=24%  Similarity=0.244  Sum_probs=66.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+|+|||||++|+.+|..|++.|.+|+++++.+.+..        +.                            ++  
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~--------~~----------------------------~~--  178 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN--------KL----------------------------FD--  178 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc--------cc----------------------------cC--
Confidence            36899999999999999999999999999998543210        00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ......+.+.+++.+++++.+ .+..++.+...+...+|  .++.+|.||+|+|.+|.
T Consensus       179 ----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       179 ----------EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG--GVYQADMVILATGIKPN  234 (427)
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC--CEEEeCEEEECCCccCC
Confidence                      001112234556678998866 45555544333344556  57999999999999885

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.10  E-value=4.3e-06  Score=74.39  Aligned_cols=40  Identities=28%  Similarity=0.469  Sum_probs=36.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      .+|+|||+|+||++||..|+..|.+|+|+||..-+||...
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA   41 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA   41 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence            4699999999999999999999999999999988988654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=4.3e-06  Score=76.21  Aligned_cols=43  Identities=37%  Similarity=0.552  Sum_probs=39.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      ++|++|||+|.+|+..|..|++.|.+|.||||++.+||.|-..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde   43 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE   43 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence            4799999999999999999999999999999999999998544

>PLN02576 protoporphyrinogen oxidase

Probab=98.10  E-value=4.1e-06  Score=85.78  Aligned_cols=43  Identities=33%  Similarity=0.519  Sum_probs=39.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~   84 (477)
                      .++||+|||||++||+||+.|++. |.+|+|+|+++.+||.+..
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t   54 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS   54 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence            357999999999999999999999 9999999999999997654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.09  E-value=3.6e-05  Score=78.40  Aligned_cols=138  Identities=27%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCC-------------------------------C--------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-------------------------------D--------  254 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-------------------------------~--------  254 (477)
                      .|+|+|||+|++|+-.+..+.+.|.+++++++++.+...+                               +        
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            3789999999999999999999999999999988763110                               0        


Q ss_pred             ---HHHHHHHHHHHHhcCc--EEEeCceEEEEEEcCC-----eEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCC
Q 011787          255 ---GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSGD-----GVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLG  322 (477)
Q Consensus       255 ---~~~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~-----~~~v~~~~~~~~~~~~i~~D~vi~a~G~~--p~~~~l~  322 (477)
                         .++.+.++...+.-++  .+.++++|.+++..++     +..++..  .++..++..+|.|++|+|.-  |+.+.. 
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~~P~~P~~-  157 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFSKPNIPEP-  157 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcCCCCCChh-
Confidence               4677777777776665  5788999999987543     3445543  34444567799999999954  443310 


Q ss_pred             ccccceeecCCCCeecCCCCCC----CCCCeEEecccC
Q 011787          323 LDKIGVETDKMGRIPVNERFAT----NIPGVYAIGDVI  356 (477)
Q Consensus       323 ~~~~gl~~~~~g~i~vd~~l~t----~~~~vya~GD~~  356 (477)
                       .--|++.- .|.+.=...++.    ..++|-++|-..
T Consensus       158 -~~~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~  193 (531)
T PF00743_consen  158 -SFPGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN  193 (531)
T ss_dssp             ---CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred             -hhhhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence             01122211 244432222221    346788988654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PTZ00367 squalene epoxidase; Provisional

Probab=98.09  E-value=7.9e-06  Score=83.79  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .++||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            36899999999999999999999999999999964

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=3.9e-06  Score=82.11  Aligned_cols=43  Identities=33%  Similarity=0.438  Sum_probs=39.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG   86 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~   86 (477)
                      ++|+|+|||.|||+||.+|++.|++|+|+|.++.+||-|..+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~   43 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR   43 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeee
Confidence            4799999999999999999999999999999999999876543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.08  E-value=1.8e-05  Score=77.13  Aligned_cols=105  Identities=27%  Similarity=0.262  Sum_probs=71.8

Q ss_pred             cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC---------CCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------MDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       211 ~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      ...+++|+|||+|+.|+++|..|++.|.+|+++++.+.+...         .+.+......+.+.+.|+++..++.+..+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence            345789999999999999999999999999999998776321         23333344456667779999999888665


Q ss_pred             EE----cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787          282 DL----SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT  318 (477)
Q Consensus       282 ~~----~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~  318 (477)
                      +.    ..+.......   ..++..+.+|.||+|+|.. |..
T Consensus        95 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~lviAtGs~~~~~  133 (352)
T PRK12770         95 EPLHEEEGDEFVERIV---SLEELVKKYDAVLIATGTWKSRK  133 (352)
T ss_pred             cccccccccccccccC---CHHHHHhhCCEEEEEeCCCCCCc
Confidence            32    1111111110   0112247899999999984 543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.08  E-value=5.2e-05  Score=75.22  Aligned_cols=99  Identities=20%  Similarity=0.350  Sum_probs=69.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+-|+..|..++++|.+|+|+|+.+.+         .|.     .                          
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i---------Lp~-----~--------------------------  212 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI---------LPG-----E--------------------------  212 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC---------CCc-----C--------------------------
Confidence            467999999999999999999999999999996543         110     0                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEE-EEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                               -..+.+.+...+++.++++..+.. ..+.  .+.+.+..+++....+.+|++++|+|-+|..
T Consensus       213 ---------D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~  274 (454)
T COG1249         213 ---------DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT  274 (454)
T ss_pred             ---------CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence                     011223334555666788887743 3332  2236777777643478999999999999863

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.08  E-value=4.2e-06  Score=85.52  Aligned_cols=42  Identities=36%  Similarity=0.493  Sum_probs=38.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      .||+|||||++||+||..|++.|++|+|+|+++.+||.+...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~   43 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF   43 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence            689999999999999999999999999999999999976543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.07  E-value=4.8e-05  Score=73.37  Aligned_cols=93  Identities=22%  Similarity=0.389  Sum_probs=67.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEE-eCCCcC--CCCC--------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVE-FAADIV--PSMD--------------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~-~~~~~~--~~~~--------------------------------------  254 (477)
                      .|+|||||+.|+|.|..+++.|.+|.++. ..+.+.  +.-+                                      
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            48999999999999999999999999994 333331  1111                                      


Q ss_pred             --------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          255 --------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       255 --------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                                    ..+.+.+.+.+++ .+++++ ..+|+++..+++.+. |.+.     ++..+.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~-----~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTK-----DGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEET-----TSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeC-----CCCEEecCEEEEeccc
Confidence                          2355566677776 588886 678999988877766 4443     6789999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02529 lysine-specific histone demethylase 1

Probab=98.07  E-value=5.8e-06  Score=86.57  Aligned_cols=46  Identities=28%  Similarity=0.528  Sum_probs=40.6

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        38 ~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ++....+||+|||||+||++||..|++.|++|+|+|+++.+||.+.
T Consensus       155 ~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~  200 (738)
T PLN02529        155 PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY  200 (738)
T ss_pred             CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence            3344568999999999999999999999999999999998888764

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.06  E-value=2.6e-05  Score=78.29  Aligned_cols=35  Identities=40%  Similarity=0.591  Sum_probs=31.0

Q ss_pred             EECCChHHHHHHHHHHHCCCeEEEEecCCC--CCcee
Q 011787           48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGA--LGGTC   82 (477)
Q Consensus        48 IIGgG~AGl~aA~~l~~~g~~V~lie~~~~--~GG~~   82 (477)
                      |||+|.||++||.++++.|.+|+|+||...  .||..
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s   37 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA   37 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence            799999999999999999999999999764  46643

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07233 hypothetical protein; Provisional

Probab=98.06  E-value=4.5e-06  Score=83.96  Aligned_cols=55  Identities=20%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ..+.+.+.+.+++.|++++++++|++|+.+++++.+...     ++..+++|.||+|++.
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~-----~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEV-----DGEEEDFDAVISTAPP  252 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEe-----CCceEECCEEEECCCH
Confidence            356777888888889999999999999887776654432     3457999999999874

>PRK05868 hypothetical protein; Validated

Probab=98.05  E-value=5.6e-05  Score=74.22  Aligned_cols=100  Identities=24%  Similarity=0.369  Sum_probs=74.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---CC--C-------------HH--------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---SM--D-------------GE--------------------  256 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~~--~-------------~~--------------------  256 (477)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..   ..  .             +.                    
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            4799999999999999999999999999998765421   00  0             00                    


Q ss_pred             ---------------------HHHHHHHHHH---hcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787          257 ---------------------IRKQFQRSLE---KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       257 ---------------------~~~~~~~~l~---~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                                           ....+.+.|.   ..|+++++++++++++.+++++.+++.     ++.++++|+||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-----dg~~~~adlvIgAD  156 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFE-----RAAAREFDLVIGAD  156 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEEC-----CCCeEEeCEEEECC
Confidence                                 0112223322   358899999999999877778888775     45689999999999


Q ss_pred             cCCCCCC
Q 011787          313 GRTPFTA  319 (477)
Q Consensus       313 G~~p~~~  319 (477)
                      |.....-
T Consensus       157 G~~S~vR  163 (372)
T PRK05868        157 GLHSNVR  163 (372)
T ss_pred             CCCchHH
Confidence            9877653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.04  E-value=1.7e-05  Score=85.25  Aligned_cols=97  Identities=19%  Similarity=0.265  Sum_probs=72.1

Q ss_pred             eEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCcC--C-CCCH---------HHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          217 LVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIV--P-SMDG---------EIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       217 v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~--~-~~~~---------~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      |+|||+|+.|+.+|..+++.+   .+|+++.+.+.+.  + .+..         ++.....+.+++.||+++++++|+++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            689999999999999988764   5899999887641  1 1111         12222345678889999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.....  +.+.     ++.++.+|.+|+|||..|+...
T Consensus        81 d~~~k~--V~~~-----~g~~~~yD~LVlATGs~p~~p~  112 (785)
T TIGR02374        81 DTDQKQ--VITD-----AGRTLSYDKLILATGSYPFILP  112 (785)
T ss_pred             ECCCCE--EEEC-----CCcEeeCCEEEECCCCCcCCCC
Confidence            766543  3332     5578999999999999987654

>TIGR02730 carot_isom carotene isomerase

Probab=98.04  E-value=5.7e-06  Score=84.49  Aligned_cols=41  Identities=37%  Similarity=0.485  Sum_probs=38.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      +||+|||||.+|++||..|++.|++|+|+||+..+||.+..
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~   41 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY   41 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence            58999999999999999999999999999999999998765

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.04  E-value=5.3e-06  Score=82.11  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +.++||+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            45689999999999999999999999999999997754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.04  E-value=2.8e-05  Score=83.53  Aligned_cols=90  Identities=28%  Similarity=0.317  Sum_probs=68.4

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||||+.|+.+|..|++.|.+|+++++.+.+.       |  .++.+....-.+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            46899999999999999999999999999999877542       2  134455555567778889999998876 221 


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                              +.     +.....+|.||+|+|..+.
T Consensus       616 --------le-----~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 --------VE-----QLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             --------hh-----hheeccCCEEEECcCCCCC
Confidence                    11     1234568999999999864

>PLN02463 lycopene beta cyclase

Probab=98.04  E-value=6.1e-05  Score=75.21  Aligned_cols=97  Identities=19%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCC-C---------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPS-M---------------------------------------  253 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~-~---------------------------------------  253 (477)
                      -+|+|||+|+.|+.+|..+++.|.+|.++++.+.. .|. +                                       
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            37999999999999999999999999999986532 110 0                                       


Q ss_pred             ----CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 ----DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ----~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                          ..++.+.+.+.+.+.|++++ ...|++++..+++..+++.     ++.++++|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~-----dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCD-----DGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEEC-----CCCEEEcCEEEECcCCCcC
Confidence                01233445555667799987 5789999887777777765     4568999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.03  E-value=7.3e-05  Score=77.31  Aligned_cols=99  Identities=23%  Similarity=0.372  Sum_probs=74.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-----------CCC----CCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------VPS----MDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-----------~~~----~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ..|+|||||+.|+.+|..+++.|.+|+++++...-           .|.    ...++.+.+.+.+++.|++++ +++|.
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~   83 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL   83 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence            46999999999999999999999999999975421           011    123566777778888899986 67888


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++.+++...+...     + ..+.+|.+|+|+|.+|+...
T Consensus        84 ~i~~~~~~~~V~~~-----~-g~~~a~~lVlATGa~p~~~~  118 (555)
T TIGR03143        84 DVDFDGDIKTIKTA-----R-GDYKTLAVLIATGASPRKLG  118 (555)
T ss_pred             EEEecCCEEEEEec-----C-CEEEEeEEEECCCCccCCCC
Confidence            88765544444432     2 25889999999999987643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02661 Putative thiazole synthesis

Probab=98.03  E-value=0.00034  Score=66.52  Aligned_cols=166  Identities=19%  Similarity=0.269  Sum_probs=97.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHc-CCcEEEEEeCCCcCC---------------------------CCC-----------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVP---------------------------SMD-----------  254 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~---------------------------~~~-----------  254 (477)
                      .-.|+|||+|..|+-+|..+++. |.+|+++++...+..                           .++           
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            35899999999999999999976 889999998764311                           001           


Q ss_pred             HHHHHHHH-HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEe------ecCC---CceEEEEcCEEEEeecCCCCCCCCCc
Q 011787          255 GEIRKQFQ-RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLE------PAAG---GEKTILEADVVLVSAGRTPFTAGLGL  323 (477)
Q Consensus       255 ~~~~~~~~-~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~------~~~~---~~~~~i~~D~vi~a~G~~p~~~~l~~  323 (477)
                      .++...+. +.+++.|++++.++.+.++..+++++. +.+.      +...   .+...+.++.||+|||-.+.......
T Consensus       172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~  251 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  251 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhh
Confidence            11112233 344457899999999999877766554 3321      1111   12347999999999996553211111


Q ss_pred             c---ccceee--cCCCCeecCC-------CCCCCCCCeEEecccC----CCCCchh--HH-HHHHHHHHHHHcCC
Q 011787          324 D---KIGVET--DKMGRIPVNE-------RFATNIPGVYAIGDVI----PGPMLAH--KA-EEDGVACVEFLAGK  379 (477)
Q Consensus       324 ~---~~gl~~--~~~g~i~vd~-------~l~t~~~~vya~GD~~----~~~~~~~--~A-~~~g~~aa~~i~~~  379 (477)
                      +   ..|+..  ......+++.       +-+.-+||+|++|=.+    +.|...+  .+ ...|+.||+.|+.+
T Consensus       252 ~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~  326 (357)
T PLN02661        252 KRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA  326 (357)
T ss_pred             hcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence            1   111100  0011122221       1123489999999876    3444322  23 34688888888754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.02  E-value=5.4e-05  Score=76.73  Aligned_cols=97  Identities=26%  Similarity=0.357  Sum_probs=67.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+++++.+.+.         |.                            .+   
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~----------------------------~~---  212 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------PG----------------------------ED---  212 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------Cc----------------------------CC---
Confidence            589999999999999999999999999999854331         10                            00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecC-CceEEEEecEEEEccCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE-GGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~-g~~~~i~~d~lvlAtG~~~~  189 (477)
                               ..+...+.+.+++.+++++.+ .+..++  .+.+.+...+ ++..++.+|.||+|+|.+|.
T Consensus       213 ---------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        213 ---------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             ---------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence                     001112234556678998877 344444  2345555443 33367999999999999985

>PRK07190 hypothetical protein; Provisional

Probab=98.02  E-value=7.9e-05  Score=75.62  Aligned_cols=97  Identities=21%  Similarity=0.324  Sum_probs=73.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---C---------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S---------------------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~---------------------------------------  252 (477)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+....   .                                       
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4699999999999999999999999999998754210   0                                       


Q ss_pred             ---------CC------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787          253 ---------MD------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       253 ---------~~------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                               ++            ..+...+.+.+++.|++++.+++|++++.+++++.+.+.     +++++.+++||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~-----~g~~v~a~~vVgA  160 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLS-----NGERIQSRYVIGA  160 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEEC-----CCcEEEeCEEEEC
Confidence                     00            012223445567789999999999999888887776654     3458999999999


Q ss_pred             ecCCC
Q 011787          312 AGRTP  316 (477)
Q Consensus       312 ~G~~p  316 (477)
                      .|.+.
T Consensus       161 DG~~S  165 (487)
T PRK07190        161 DGSRS  165 (487)
T ss_pred             CCCCH
Confidence            99654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.02  E-value=6.4e-05  Score=76.20  Aligned_cols=96  Identities=22%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                     ++  
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~d--  215 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------------------------------------LD--  215 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------------------------------------CC--
Confidence            468999999999999999999999999999985433110                                     00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+...+++.+++++.+ .+..+.  .+.+.+...+|  .++.+|.+++|+|.+|.
T Consensus       216 ----------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        216 ----------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG--KKIKADCLLYANGRTGN  273 (461)
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC--CEEEeCEEEEeecCCcc
Confidence                      001112234456678888876 344443  34556666666  57999999999999985

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.02  E-value=8.3e-05  Score=67.90  Aligned_cols=78  Identities=27%  Similarity=0.349  Sum_probs=52.9

Q ss_pred             CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh------cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEE
Q 011787          237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEK------QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVL  309 (477)
Q Consensus       237 g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~------~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi  309 (477)
                      |+.|---+|....+|..- ++...+...+++      .-+++.++++|..|...++.+. +++.+ ..++...+..|.|+
T Consensus       122 GHSvpRTHr~s~plppgf-ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd-~sgek~~~~~~~VV  199 (477)
T KOG2404|consen  122 GHSVPRTHRSSGPLPPGF-EIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMD-ASGEKSKIIGDAVV  199 (477)
T ss_pred             CCCCCcccccCCCCCCch-HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEc-CCCCccceecCceE
Confidence            456666667777765432 344444444433      2478899999999998777775 55553 45566788999999


Q ss_pred             EeecCCC
Q 011787          310 VSAGRTP  316 (477)
Q Consensus       310 ~a~G~~p  316 (477)
                      +|+|--.
T Consensus       200 latGGf~  206 (477)
T KOG2404|consen  200 LATGGFG  206 (477)
T ss_pred             EecCCcC
Confidence            9998443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0003  Score=66.36  Aligned_cols=99  Identities=26%  Similarity=0.380  Sum_probs=72.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc-----------CCC-----CCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-----------VPS-----MDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~-----------~~~-----~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      ..++|||+|+.|+-.|-.+.+.+.+ +.+++....-           .|.     ..+++.+.+.+..+.-|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4689999999999999999999988 4555543111           122     2356777777888888999886 77


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.+++..++.+.+.+.     +++ ++++.||+|+|..+....
T Consensus        83 v~~v~~~~~~F~v~t~-----~~~-~~ak~vIiAtG~~~~~~~  119 (305)
T COG0492          83 VEKVELEGGPFKVKTD-----KGT-YEAKAVIIATGAGARKLG  119 (305)
T ss_pred             EEEEeecCceEEEEEC-----CCe-EEEeEEEECcCCcccCCC
Confidence            8888766545555543     444 999999999998887654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.01  E-value=0.0001  Score=73.80  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC------------------CCC----C------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV------------------PSM----D------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~------------------~~~----~------------------  254 (477)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.                  +.+    +                  
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            369999999999999999999999999999875321                  000    0                  


Q ss_pred             ----------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787          255 ----------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       255 ----------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                                            ..+.+++.+..++.|++++.+++|+++..+++.+.....     ++.++.+|.||.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-----~g~~i~A~~VI~A~  160 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-----DGDVIEAKTVILAD  160 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-----CCcEEECCEEEEEe
Confidence                                  012234555667789999999999998776665543322     34579999999999


Q ss_pred             cCCC
Q 011787          313 GRTP  316 (477)
Q Consensus       313 G~~p  316 (477)
                      |...
T Consensus       161 G~~s  164 (428)
T PRK10157        161 GVNS  164 (428)
T ss_pred             CCCH
Confidence            9754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.01  E-value=1.7e-05  Score=79.72  Aligned_cols=93  Identities=33%  Similarity=0.375  Sum_probs=70.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +  .++.++.....+.+++.|+++++++.+.    
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  207 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG----  207 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence            36799999999999999999999999999999876541       2  2466777777778889999999887541    


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFTA  319 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~~  319 (477)
                        .  .+.+.     + ....+|.||+|+|. .|...
T Consensus       208 --~--~v~~~-----~-~~~~yd~viiAtGa~~p~~~  234 (449)
T TIGR01316       208 --K--TATLE-----E-LFSQYDAVFIGTGAGLPKLM  234 (449)
T ss_pred             --C--cCCHH-----H-HHhhCCEEEEeCCCCCCCcC
Confidence              1  12221     1 13468999999997 56543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.01  E-value=1.7e-05  Score=80.20  Aligned_cols=92  Identities=30%  Similarity=0.365  Sum_probs=71.2

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      ..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.       |  .++.++.....+.+++.|+++++++.+..  
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--  215 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--  215 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence            457899999999999999999999999999999887652       2  23567777778888899999998887521  


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CC
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PF  317 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~  317 (477)
                            .+.+.     + ..+.+|.||+|+|.. |+
T Consensus       216 ------~v~~~-----~-~~~~~d~vvlAtGa~~~~  239 (457)
T PRK11749        216 ------DITLD-----E-LRAGYDAVFIGTGAGLPR  239 (457)
T ss_pred             ------ccCHH-----H-HHhhCCEEEEccCCCCCC
Confidence                  11111     1 237799999999985 44

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.99  E-value=6.6e-05  Score=76.11  Aligned_cols=98  Identities=22%  Similarity=0.323  Sum_probs=66.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+.         |..                            +   
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------~~~----------------------------d---  212 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------PNE----------------------------D---  212 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------Ccc----------------------------C---
Confidence            589999999999999999999999999999854321         100                            0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEec--CCceEEEEecEEEEccCCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI--EGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~--~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                               ......+.+.+++.+++++.+ .+..+..  ..+.+...  +|...++.+|.||+|+|.+|..
T Consensus       213 ---------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        213 ---------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             ---------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence                     001112334566779998877 3444432  23334332  5544679999999999998853

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.99  E-value=6.2e-06  Score=84.56  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ..+.+.+.+.+++.|+++++++.|++|..+++++ .+++.     +++++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~-----~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLA-----DGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEEC-----CCCEEECCEEEECCcHH
Confidence            4677888888999999999999999998776653 45543     45689999999988853

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.99  E-value=8.2e-05  Score=73.47  Aligned_cols=97  Identities=16%  Similarity=0.383  Sum_probs=73.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCcCCC---------CC-------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPS---------MD-------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~---------~~-------------------------------  254 (477)
                      .|+|||||+.|+-+|..|++.| .+|+++++.+...+.         +.                               
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 999999987532110         00                               


Q ss_pred             ------------------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 011787          255 ------------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL  309 (477)
Q Consensus       255 ------------------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi  309 (477)
                                              .++.+.+.+.+.+ .|++++++++++++..+++++.+++.     ++.++.+|.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vV  155 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLD-----NGQQLRAKLLI  155 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEEC-----CCCEEEeeEEE
Confidence                                    1123334445555 48999999999999877777777654     34579999999


Q ss_pred             EeecCCCC
Q 011787          310 VSAGRTPF  317 (477)
Q Consensus       310 ~a~G~~p~  317 (477)
                      .|.|....
T Consensus       156 ~AdG~~S~  163 (382)
T TIGR01984       156 AADGANSK  163 (382)
T ss_pred             EecCCChH
Confidence            99997754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.98  E-value=8.4e-05  Score=74.89  Aligned_cols=96  Identities=16%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..+++.|.+|+++++.+.+.         |.                            ++  
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------~~----------------------------~d--  206 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------RG----------------------------FD--  206 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------cc----------------------------cC--
Confidence            3579999999999999999999999999999854320         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+...+++.+++++.+ .+..++  .+...+.+.++  .++.+|.+|+|+|.+|.
T Consensus       207 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       207 ----------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG--EEIVADVVLFATGRSPN  264 (446)
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC--cEeecCEEEEeeCCCcC
Confidence                      001112234456678998876 344443  34456666566  67999999999999885

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.97  E-value=6e-05  Score=75.18  Aligned_cols=97  Identities=33%  Similarity=0.424  Sum_probs=69.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||+|++|+.+|..|++.|++|+++|+.+.+++....                                      
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------  177 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------  177 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence            379999999999999999999999999999998777653110                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEE--E---EEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEV--S---VDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~--~---v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.++.++++++.+. +..++....  .   +...++  ..+.+|.+++++|.+|+
T Consensus       178 ----------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         178 ----------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN  238 (415)
T ss_pred             ----------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence                      0112223456667788886664 344544321  1   344445  78999999999999985

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.96  E-value=8.8e-06  Score=82.54  Aligned_cols=41  Identities=37%  Similarity=0.520  Sum_probs=36.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHC------CCeEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~   84 (477)
                      ++|+|||||++||+||+.|++.      |.+|+|+|+++++||.+..
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T   48 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS   48 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence            5799999999999999999986      3799999999999998654

>PRK06370 mercuric reductase; Validated

Probab=97.95  E-value=0.0001  Score=74.64  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=66.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+...              ..                         
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~--------------~~-------------------------  211 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR--------------ED-------------------------  211 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc--------------cC-------------------------
Confidence            368999999999999999999999999999985443110              00                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEec-CCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI-EGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+ .+..++.  +...+... ++...++.+|.||+|+|.+|..
T Consensus       212 ----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        212 ----------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence                      001112234456678998876 4444432  23333322 1223679999999999999863

>TIGR02053 MerA mercuric reductase

Probab=97.94  E-value=8.4e-05  Score=75.35  Aligned_cols=98  Identities=23%  Similarity=0.373  Sum_probs=66.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||+|+.|+.+|..|++.|.+|+|+++.+.+.         |.     .                       +   
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~-----~-----------------------d---  206 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------PR-----E-----------------------E---  206 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------Cc-----c-----------------------C---
Confidence            689999999999999999999999999999854331         00     0                       0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEec-CCceEEEEecEEEEccCCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                               ......+...+++.+++++.+. +..+.  .+...+... ++...++.+|.+|+|+|.+|..
T Consensus       207 ---------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       207 ---------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             ---------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence                     0011122344566789888774 44443  233444432 2223679999999999999853

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.94  E-value=0.00011  Score=74.43  Aligned_cols=96  Identities=23%  Similarity=0.365  Sum_probs=67.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+...              ..                          
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~--------------~d--------------------------  217 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG--------------ED--------------------------  217 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC--------------CC--------------------------
Confidence            58999999999999999999999999999985433110              00                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                               ......+...+++.+|+++.+ .+..+  +.+.+.+...+|  .++.+|.+++|+|.+|..
T Consensus       218 ---------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g--~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        218 ---------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG--RTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             ---------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC--cEEEecEEEEeecCCcCC
Confidence                     001112334566778988876 34444  234556666666  679999999999999863

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.94  E-value=3.1e-05  Score=78.20  Aligned_cols=92  Identities=25%  Similarity=0.394  Sum_probs=70.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.++.....+.+++.|++++.++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46899999999999999999999999999999887542       2  246667677778889999999998876320  


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                            +.+.      .....+|.||+|+|..+..
T Consensus       218 ------~~~~------~~~~~~D~vilAtGa~~~~  240 (467)
T TIGR01318       218 ------ISLD------DLLEDYDAVFLGVGTYRSM  240 (467)
T ss_pred             ------cCHH------HHHhcCCEEEEEeCCCCCC
Confidence                  1111      1234699999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06753 hypothetical protein; Provisional

Probab=97.93  E-value=9.1e-05  Score=72.87  Aligned_cols=98  Identities=18%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CCHHH---------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEI---------------------------------  257 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~~~~---------------------------------  257 (477)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+...     +.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6999999999999999999999999999988753210     00000                                 


Q ss_pred             ---------------HHHHHHHHHh--cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          258 ---------------RKQFQRSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       258 ---------------~~~~~~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                                     ...+.+.|.+  .+.++++++++++++.+++++.+++.     ++.++.+|+||.|.|..+.+
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFA-----DGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEEC-----CCCEEecCEEEECCCcchHH
Confidence                           1112223322  14568889999999887777777764     45689999999999977654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.93  E-value=1.1e-05  Score=81.71  Aligned_cols=40  Identities=30%  Similarity=0.448  Sum_probs=37.2

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      +|+|||||++|++||+.|.+.|++|+|+|+++.+||.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA   40 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence            5899999999999999999999999999999999997643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06116 glutathione reductase; Validated

Probab=97.92  E-value=9.8e-05  Score=74.57  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|.+.|.+|+++++.+.+..         .     .                       +  
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~-----~-----------------------~--  207 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------G-----F-----------------------D--  207 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------c-----c-----------------------C--
Confidence            36899999999999999999999999999998543210         0     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CC-EEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PS-EVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~-~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+...+++.+++++.+ .+..++  .+ .+.+.+.+|  .++.+|.||+|+|.+|.
T Consensus       208 ----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g--~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        208 ----------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG--ETLTVDCLIWAIGREPN  266 (450)
T ss_pred             ----------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC--cEEEeCEEEEeeCCCcC
Confidence                      001122234456678988876 344443  22 256666666  67999999999999885

>PRK07538 hypothetical protein; Provisional

Probab=97.92  E-value=0.00016  Score=72.11  Aligned_cols=103  Identities=24%  Similarity=0.353  Sum_probs=73.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CC------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD------------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~------------------------------------  254 (477)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+.+.     +.                                    
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            5899999999999999999999999999987643210     00                                    


Q ss_pred             --------------------HHHHHHHHHHHHh-cC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787          255 --------------------GEIRKQFQRSLEK-QK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       255 --------------------~~~~~~~~~~l~~-~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                                          ..+.+.+.+.+.+ .| ..+++++++++++.+++++.+.+.+...+++.++.+|+||-|.
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD  161 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD  161 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence                                0111222333333 35 4699999999998777766666654444556789999999999


Q ss_pred             cCCCCC
Q 011787          313 GRTPFT  318 (477)
Q Consensus       313 G~~p~~  318 (477)
                      |.....
T Consensus       162 G~~S~v  167 (413)
T PRK07538        162 GIHSAV  167 (413)
T ss_pred             CCCHHH
Confidence            987654

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.90  E-value=0.00019  Score=68.26  Aligned_cols=36  Identities=31%  Similarity=0.531  Sum_probs=32.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +.+|+|||||.+|+++|+.|.+.|.+|+|+|+.+.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            358999999999999999999999999999997654

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.89  E-value=0.00011  Score=67.70  Aligned_cols=45  Identities=33%  Similarity=0.593  Sum_probs=37.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC----CCeEEEEecCCCC---------CceeeccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGAL---------GGTCLNVG   86 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~---------GG~~~~~~   86 (477)
                      .++||+|||||-.|.+.|+-|+++    |++|++||+++..         ||.|....
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS  142 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS  142 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence            478999999999999999999875    6999999997643         67775543

>PLN02507 glutathione reductase

Probab=97.89  E-value=0.00015  Score=73.98  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=67.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+..|..|++.|.+|+|+++.+.+-         +.                            ++  
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l---------~~----------------------------~d--  243 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL---------RG----------------------------FD--  243 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC---------cc----------------------------cC--
Confidence            3589999999999999999999999999999854320         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ......+.+.+++.+++++.+ .+..+.  .+.+.+...+|  .++.+|.+++|+|.+|..
T Consensus       244 ----------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        244 ----------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHG--EEFVADVVLFATGRAPNT  302 (499)
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCC--cEEEcCEEEEeecCCCCC
Confidence                      001122334556778998877 344443  34556666666  679999999999999853

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.89  E-value=0.00019  Score=71.00  Aligned_cols=98  Identities=23%  Similarity=0.429  Sum_probs=74.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---C------------------C--------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S------------------M--------------------  253 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~------------------~--------------------  253 (477)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+....   .                  +                    
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4699999999999999999999999999998765311   0                  0                    


Q ss_pred             ------------------------CHHHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 011787          254 ------------------------DGEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVV  308 (477)
Q Consensus       254 ------------------------~~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~v  308 (477)
                                              ...+.+.+.+.+++.| ++++ ++++++++.+++.+.+++.     ++.++.+|.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~v  159 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLA-----DGQVLRADLV  159 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEEC-----CCCEEEeeEE
Confidence                                    0122334445566666 8888 8899999877777777664     4468999999


Q ss_pred             EEeecCCCCC
Q 011787          309 LVSAGRTPFT  318 (477)
Q Consensus       309 i~a~G~~p~~  318 (477)
                      |.|.|..+..
T Consensus       160 I~adG~~S~v  169 (388)
T PRK07608        160 VGADGAHSWV  169 (388)
T ss_pred             EEeCCCCchH
Confidence            9999987654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.88  E-value=0.00025  Score=70.24  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=75.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--C-----------------------------C-----------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-----------------------------S-----------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~-----------------------------~-----------  252 (477)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  .                             .           
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            579999999999999999999999999999886410  0                             0           


Q ss_pred             -----C-------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          253 -----M-------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       253 -----~-------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                           +             ...+.+.+.+...+.|+++++++++++++. +++.+.+++.  .++...++++|+||-|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~--~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE--KDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE--cCCeEEEEEeCEEEECCC
Confidence                 0             012223344444667999999999999876 5556666663  233445799999999999


Q ss_pred             CCCCCC
Q 011787          314 RTPFTA  319 (477)
Q Consensus       314 ~~p~~~  319 (477)
                      .....-
T Consensus       161 ~~S~vR  166 (392)
T PRK08243        161 FHGVSR  166 (392)
T ss_pred             CCCchh
Confidence            887653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.88  E-value=0.00036  Score=69.08  Aligned_cols=106  Identities=26%  Similarity=0.263  Sum_probs=79.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC--------------C--------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS--------------M--------------------------  253 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------~--------------------------  253 (477)
                      .++++|||+|++|+-.|..|.+.|.++++++|.+.+...              .                          
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            688999999999999999999999999999998875210              0                          


Q ss_pred             --C-HHHHHHHHHHHHhcCc--EEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCC
Q 011787          254 --D-GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAG  320 (477)
Q Consensus       254 --~-~~~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~--p~~~~  320 (477)
                        + .++.+.++...+.-++  .+.+++++..++..+ +...+...+.... ..+..+|.|++|+|--  |+...
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~  159 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQ  159 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCc
Confidence              0 1456666666666664  577788888888777 5777776532221 3678899999999976  55543

>PRK12831 putative oxidoreductase; Provisional

Probab=97.86  E-value=5.5e-05  Score=76.34  Aligned_cols=95  Identities=25%  Similarity=0.309  Sum_probs=68.6

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------CC--CCHH-HHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------PS--MDGE-IRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~~--~~~~-~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      ..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |.  ++.+ +.....+.+++.|+++++++.+.. 
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-  216 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-  216 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence            347899999999999999999999999999999866431       21  2233 556666778889999999886521 


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT  318 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~  318 (477)
                             .+.+.+    ....+.+|.|++|+|. .|..
T Consensus       217 -------~v~~~~----~~~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        217 -------TVTIDE----LLEEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             -------cCCHHH----HHhccCCCEEEEeCCCCCCCC
Confidence                   111110    1124569999999997 5654

>PRK07846 mycothione reductase; Reviewed

Probab=97.86  E-value=0.00014  Score=73.16  Aligned_cols=95  Identities=22%  Similarity=0.287  Sum_probs=63.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+..         .                            ++. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---------~----------------------------~d~-  207 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---------H----------------------------LDD-  207 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------c----------------------------cCH-
Confidence            36899999999999999999999999999998543310         0                            000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                 .+...+...+ +.+++++.+ ++..++  .+...+.+.+|  .++.+|.|++|+|.+|.
T Consensus       208 -----------~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        208 -----------DISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDG--STVEADVLLVATGRVPN  263 (451)
T ss_pred             -----------HHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCC--cEeecCEEEEEECCccC
Confidence                       0001111122 346777765 344443  23455666666  67999999999999985

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.85  E-value=2.4e-05  Score=80.07  Aligned_cols=41  Identities=41%  Similarity=0.616  Sum_probs=37.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ++||||||+| ||++||.++++.|.+|+||||....||....
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~   47 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY   47 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence            6899999999 9999999999999999999998877876544

>PRK14694 putative mercuric reductase; Provisional

Probab=97.85  E-value=0.00022  Score=72.32  Aligned_cols=95  Identities=20%  Similarity=0.351  Sum_probs=64.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||+|+.|+.+|..|+++|.+|+++++...+          |.     ..                         
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l----------~~-----~~-------------------------  217 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL----------SQ-----ED-------------------------  217 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC----------CC-----CC-------------------------
Confidence            358999999999999999999999999999873211          00     00                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+ .+..++  ...+.+.+.++   ++.+|.||+|+|.+|..
T Consensus       218 ----------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        218 ----------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG---TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC---EEEeCEEEEccCCCCCc
Confidence                      001122334566778998876 444443  23344544433   59999999999999853

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.84  E-value=5.8e-05  Score=76.64  Aligned_cols=92  Identities=26%  Similarity=0.351  Sum_probs=70.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.++.....+.+++.||++++++.+..-  
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence            35799999999999999999999999999999887642       2  235566666677888899999998877410  


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT  318 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~  318 (477)
                            +..      +.....+|.|++|+|.. |..
T Consensus       220 ------~~~------~~~~~~~d~VilAtGa~~~~~  243 (485)
T TIGR01317       220 ------ISA------DELKEQFDAVVLAGGATKPRD  243 (485)
T ss_pred             ------cCH------HHHHhhCCEEEEccCCCCCCc
Confidence                  110      11235699999999997 443

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.84  E-value=5e-05  Score=76.21  Aligned_cols=91  Identities=18%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHH--cCCcEEEEEeCCCcCC--------CC--CHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWAR--LGSEVTVVEFAADIVP--------SM--DGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~--~g~~Vtli~~~~~~~~--------~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .+++|+|||+|+.|+.+|..|++  .|.+|+++++.+.+..        ..  .+.+...+.+.++..+++++.+..+. 
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg-  103 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG-  103 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence            46889999999999999999987  7999999999987631        11  12344455666777889998775552 


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                           .  .+++.      .....+|.||+|+|..+.
T Consensus       104 -----~--dvtl~------~L~~~yDaVIlAtGa~~~  127 (491)
T PLN02852        104 -----R--DVSLS------ELRDLYHVVVLAYGAESD  127 (491)
T ss_pred             -----c--cccHH------HHhhhCCEEEEecCCCCC
Confidence                 1  12222      123469999999998763

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.84  E-value=0.0002  Score=72.49  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=65.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..+.+.|.+|+|+|+.+.+.         |.                            ++  
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------~~----------------------------~d--  214 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------PG----------------------------TD--  214 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------CC----------------------------CC--
Confidence            4689999999999999999999999999999854331         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CEEEEEec---CCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI---EGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~~~v~~~---~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ......+...+++.+|+++.+ .+..+..  +.+.+...   +|....+.+|.|++|+|.+|.
T Consensus       215 ----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        215 ----------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY  277 (466)
T ss_pred             ----------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence                      001111234456678998877 3444432  34443322   233467999999999999985

>PLN02676 polyamine oxidase

Probab=97.83  E-value=2.3e-05  Score=79.47  Aligned_cols=42  Identities=24%  Similarity=0.461  Sum_probs=38.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~   84 (477)
                      .+||+|||||++||+||.+|++.|. +|+|+|+++.+||.+..
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~   68 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK   68 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence            5799999999999999999999998 69999999999997643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.83  E-value=0.00018  Score=72.48  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+...      .        .                         
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------~--------d-------------------------  206 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------F--------D-------------------------  206 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------c--------C-------------------------
Confidence            368999999999999999999999999999985433100      0        0                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC---CEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+. +..+..   ....+...++ ...+.+|.+++|+|.+|..
T Consensus       207 ----------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       207 ----------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDG-KSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCC-cEEEEcCEEEEeeCCCcCc
Confidence                      0011122344566788888763 444432   2245555555 2569999999999999863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.83  E-value=0.00053  Score=72.38  Aligned_cols=90  Identities=24%  Similarity=0.411  Sum_probs=73.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|.|||+|+.|+-+|..|.+.|+.|++.+|.+++.       |  .+|+.+.+.-.+.|.+.||+|++++++-.-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            47999999999999999999999999999999999873       2  457788888888999999999998876321  


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                            +.+      ++..-+-|.|++|+|..-
T Consensus      1862 ------vs~------d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 ------VSL------DELKKENDAIVLATGSTT 1882 (2142)
T ss_pred             ------ccH------HHHhhccCeEEEEeCCCC
Confidence                  111      334556799999999654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.83  E-value=0.00025  Score=71.94  Aligned_cols=98  Identities=19%  Similarity=0.299  Sum_probs=64.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+...                 .                    +  
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------~--------------------d--  209 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-----------------E--------------------D--  209 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------h--------------------h--
Confidence            368999999999999999999999999999985433110                 0                    0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--C-EEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--S-EVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~-~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++. ++++.+ .+..++.  + .+.+...++...++.+|.+++|+|.+|..
T Consensus       210 ----------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        210 ----------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT  270 (460)
T ss_pred             ----------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence                      00111223445556 777765 3334432  1 34443334545679999999999999863

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.83  E-value=0.00038  Score=68.84  Aligned_cols=102  Identities=29%  Similarity=0.417  Sum_probs=72.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeC-CCcCC-----------CC------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADIVP-----------SM------------------------------  253 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~~-----------~~------------------------------  253 (477)
                      +|+|||+|+.|+-+|..|++.|.+|.++++. +...+           .+                              
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999987 22100           00                              


Q ss_pred             --------C-HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec---CCCceEEEEcCEEEEeecCCCCC
Q 011787          254 --------D-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---AGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       254 --------~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~---~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                              + ..+.+.+.+...+.|++++.. .++++..+++.+.+++.+.   ..+...++.+|.||.|.|..+..
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV  157 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence                    0 122234455556679999754 6888887777777776531   12233579999999999976543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.82  E-value=0.00026  Score=69.92  Aligned_cols=99  Identities=22%  Similarity=0.407  Sum_probs=72.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC--cC---C------CCCH-------------H---------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD--IV---P------SMDG-------------E---------------  256 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~--~~---~------~~~~-------------~---------------  256 (477)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.  +.   +      .+.+             .               
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~   84 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETW   84 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEE
Confidence            699999999999999999999999999997641  00   0      0000             0               


Q ss_pred             ---------------------------HHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 011787          257 ---------------------------IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVV  308 (477)
Q Consensus       257 ---------------------------~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~v  308 (477)
                                                 +...+.+.+++ .|++++.++++++++.+++++.+++.     ++.++++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~-----~g~~~~~~lv  159 (384)
T PRK08849         85 EHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLE-----SGAEIEAKWV  159 (384)
T ss_pred             eCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEEC-----CCCEEEeeEE
Confidence                                       00011122222 37899999999999888888888775     4578999999


Q ss_pred             EEeecCCCCCC
Q 011787          309 LVSAGRTPFTA  319 (477)
Q Consensus       309 i~a~G~~p~~~  319 (477)
                      |.|.|..+..-
T Consensus       160 IgADG~~S~vR  170 (384)
T PRK08849        160 IGADGANSQVR  170 (384)
T ss_pred             EEecCCCchhH
Confidence            99999988653

>PRK09897 hypothetical protein; Provisional

Probab=97.81  E-value=0.00034  Score=71.17  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCCC-----------------------CHHHHHH---------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSM-----------------------DGEIRKQ---------  260 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~-----------------------~~~~~~~---------  260 (477)
                      ++|+|||+|++|+-+|..|.+.+.  +|++++++..+....                       ++.+.++         
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            479999999999999999987654  799999866442100                       0111111         


Q ss_pred             -------------------------------HHHHHHhcC--cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787          261 -------------------------------FQRSLEKQK--MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV  307 (477)
Q Consensus       261 -------------------------------~~~~l~~~g--v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~  307 (477)
                                                     +.+.+.+.|  +.++.+++|++++..++++.+++.+    ++..+.+|.
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~----gg~~i~aD~  157 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ----DLPSETFDL  157 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC----CCeEEEcCE
Confidence                                           122334455  7788888999998888777776531    346899999


Q ss_pred             EEEeecCCCC
Q 011787          308 VLVSAGRTPF  317 (477)
Q Consensus       308 vi~a~G~~p~  317 (477)
                      ||+|+|..+.
T Consensus       158 VVLAtGh~~p  167 (534)
T PRK09897        158 AVIATGHVWP  167 (534)
T ss_pred             EEECCCCCCC
Confidence            9999997553

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.80  E-value=0.00015  Score=67.85  Aligned_cols=36  Identities=28%  Similarity=0.466  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ....+||+|||||.+|.+.|..|++.|.+|.+|||+
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            445789999999999999999999999999999995

>PRK07045 putative monooxygenase; Reviewed

Probab=97.79  E-value=0.00033  Score=69.31  Aligned_cols=100  Identities=20%  Similarity=0.372  Sum_probs=72.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--C---CC-----------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--S---MD-----------------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~---~~-----------------------------------  254 (477)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+..  .   +.                                   
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999998775310  0   00                                   


Q ss_pred             --------------------HHHHHHHHHHHH-hcCcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEe
Q 011787          255 --------------------GEIRKQFQRSLE-KQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       255 --------------------~~~~~~~~~~l~-~~gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                                          .++.+.+.+.+. ..|++++++++++.++.++++.  .+++.     +++++.+|+||-|
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----~g~~~~~~~vIgA  160 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS-----DGERVAPTVLVGA  160 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC-----CCCEEECCEEEEC
Confidence                                012223333333 3479999999999998765553  34443     4568999999999


Q ss_pred             ecCCCCCC
Q 011787          312 AGRTPFTA  319 (477)
Q Consensus       312 ~G~~p~~~  319 (477)
                      .|.....-
T Consensus       161 DG~~S~vR  168 (388)
T PRK07045        161 DGARSMIR  168 (388)
T ss_pred             CCCChHHH
Confidence            99877543

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.78  E-value=0.0003  Score=69.57  Aligned_cols=98  Identities=22%  Similarity=0.320  Sum_probs=71.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----CC--------------C----------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----SM--------------D----------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----~~--------------~----------------------  254 (477)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....    .+              +                      
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~   87 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI   87 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence            4699999999999999999999999999998753210    00              0                      


Q ss_pred             -----------------------HHHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 011787          255 -----------------------GEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV  310 (477)
Q Consensus       255 -----------------------~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~  310 (477)
                                             ..+.+.+.+.+.+. ++. +++++|.+++.+++.+.+++.     +++++.+|+||.
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~  161 (388)
T PRK07494         88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA-----DGTTLSARLVVG  161 (388)
T ss_pred             CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEEC-----CCCEEEEeEEEE
Confidence                                   01223334444444 455 778999999877777777664     456899999999


Q ss_pred             eecCCCCC
Q 011787          311 SAGRTPFT  318 (477)
Q Consensus       311 a~G~~p~~  318 (477)
                      |.|..+..
T Consensus       162 AdG~~S~v  169 (388)
T PRK07494        162 ADGRNSPV  169 (388)
T ss_pred             ecCCCchh
Confidence            99987644

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.78  E-value=0.00031  Score=70.70  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=66.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||+|+.|+..|..|.+.|.+|+|+++.+.+.         |..     .                         
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~~-----~-------------------------  198 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------PRE-----D-------------------------  198 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------CCc-----C-------------------------
Confidence            3589999999999999999999999999999854321         100     0                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+ ++..++  ...+.+...++   ++.+|.+++|+|.+|..
T Consensus       199 ----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g---~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        199 ----------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA---QLAVDALLIASGRQPAT  256 (441)
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC---eEEeCEEEEeecCCcCC
Confidence                      001112334566778998876 344443  33455554444   58899999999999853

>PRK14727 putative mercuric reductase; Provisional

Probab=97.78  E-value=0.00034  Score=71.10  Aligned_cols=94  Identities=18%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+..|..|++.|.+|+|+++...+          +.     ..                          
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l----------~~-----~d--------------------------  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL----------FR-----ED--------------------------  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC----------Cc-----ch--------------------------
Confidence            58999999999999999999999999999873211          00     00                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                               ..+...+...+++.+++++.+ .+..+.  .+.+.+...++   ++.+|.+|+|+|..|..
T Consensus       228 ---------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g---~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        228 ---------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG---ELRAEKLLISTGRHANT  285 (479)
T ss_pred             ---------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC---eEEeCEEEEccCCCCCc
Confidence                     001122334556778888876 343332  34455555444   58899999999999853

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.78  E-value=7.7e-05  Score=80.09  Aligned_cols=94  Identities=29%  Similarity=0.328  Sum_probs=69.8

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.++.....+.+++.||++++++.+.    
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~----  505 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG----  505 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence            36799999999999999999999999999999865431       2  2355666666777888999999887541    


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFTA  319 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~~  319 (477)
                        .  .+++.     +.....+|.||+|+|. .|...
T Consensus       506 --~--~v~~~-----~l~~~~ydavvlAtGa~~~~~l  533 (752)
T PRK12778        506 --K--TITIE-----ELEEEGFKGIFIASGAGLPNFM  533 (752)
T ss_pred             --C--cCCHH-----HHhhcCCCEEEEeCCCCCCCCC
Confidence              1  12222     2234569999999998 46543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.78  E-value=7e-05  Score=82.16  Aligned_cols=93  Identities=20%  Similarity=0.235  Sum_probs=69.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS  284 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~  284 (477)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.++.....+.+++.||++++++.+.     
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-----  504 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-----  504 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence            5799999999999999999999999999999886552       2  2356777778888999999999886541     


Q ss_pred             CCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787          285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT  318 (477)
Q Consensus       285 ~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~  318 (477)
                       .  .+++...    .....+|.||+|+|.. |..
T Consensus       505 -~--~~~~~~l----~~~~~yDaViIATGa~~pr~  532 (1006)
T PRK12775        505 -K--TFTVPQL----MNDKGFDAVFLGVGAGAPTF  532 (1006)
T ss_pred             -C--ccCHHHH----hhccCCCEEEEecCCCCCCC
Confidence             1  1121110    0124589999999984 554

>PLN02697 lycopene epsilon cyclase

Probab=97.77  E-value=0.00035  Score=71.05  Aligned_cols=97  Identities=22%  Similarity=0.371  Sum_probs=70.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCC---C-------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM---D-------------------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~---~-------------------------------------  254 (477)
                      -.|+|||+|+.|+.+|..+++.|.+|.++++...+.+..   .                                     
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            469999999999999999999999999998653321100   0                                     


Q ss_pred             ---HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 ---GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ---~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                         ..+.+.+.+.+.+.|+++ .++.|+++..+++++.+....    ++.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~----dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACE----DGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEc----CCcEEECCEEEECCCcCh
Confidence               122344555566679998 578999998766665543221    456899999999999877

>TIGR03452 mycothione_red mycothione reductase

Probab=97.77  E-value=0.00026  Score=71.34  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|++|++.+.+...                                     ++. 
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------------------------------------~d~-  210 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------------------------------------LDE-  210 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------------------------------------cCH-
Confidence            368999999999999999999999999999985432100                                     000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      +           +...+...+ +.+++++.+ .+..++  .+.+.+...+|  .++.+|.+++|+|.+|.
T Consensus       211 ~-----------~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       211 D-----------ISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDG--STVTADVLLVATGRVPN  266 (452)
T ss_pred             H-----------HHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCC--CEEEcCEEEEeeccCcC
Confidence            0           001111222 246777765 344443  34456666666  57999999999999985

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.76  E-value=0.0003  Score=71.37  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      .+++|||||+.|+.+|..|.+.|.+|+||++.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            6899999999999999999999999999998543

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00014  Score=69.84  Aligned_cols=35  Identities=46%  Similarity=0.649  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ...|||||||||.||+.||..++|.|.+.+|+..+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            56799999999999999999999999999999874

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.75  E-value=0.00011  Score=74.52  Aligned_cols=89  Identities=31%  Similarity=0.441  Sum_probs=67.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.+......+.+++.|+++++++.+.. + 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            46899999999999999999999999999999887652       1  23555666666778889999999886631 0 


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                            +..      +.....+|.|++|+|..
T Consensus       220 ------~~~------~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        220 ------ITA------EELLAEYDAVFLGTGAY  239 (471)
T ss_pred             ------CCH------HHHHhhCCEEEEecCCC
Confidence                  110      11235799999999997

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.75  E-value=0.00022  Score=73.90  Aligned_cols=300  Identities=18%  Similarity=0.119  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCeEEEEecCCCCCceeeccCccC-----------------------------chhhhhhhHHHHHHHhh
Q 011787           56 YVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP-----------------------------SKALLHSSHMYHEAMHS  106 (477)
Q Consensus        56 l~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p-----------------------------~~~l~~~~~~~~~~~~~  106 (477)
                      |+||.++++.|.+|+||||....+|.....+...                             ...+...........++
T Consensus         1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~   80 (570)
T PRK05675          1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE   80 (570)
T ss_pred             ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH


Q ss_pred             hhhCCccccccccChHHHHHHHHH-------------------HHHHHHHHHHHHhhhCCeEEEEe---EEEEecCCEEE
Q 011787          107 FASHGVKFSSVEVDLPAMMAQKDK-------------------AVSNLTRGIEGLFKKNKVTYVKG---YGKFISPSEVS  164 (477)
Q Consensus       107 ~~~~g~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~  164 (477)
                      +.++|+++....-.-.........                   ....+...+.+...+.+++++..   .....+.+...
T Consensus        81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v  160 (570)
T PRK05675         81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV  160 (570)
T ss_pred             HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE


Q ss_pred             E-----EecCCceEEEEecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHH-----
Q 011787          165 V-----DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA-----  234 (477)
Q Consensus       165 v-----~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~-----  234 (477)
                      +     ...+|....+.++.||||||+-....+...  .....+-+.......       +|+-...+|+.+...     
T Consensus       161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~--~~~~~tGDG~~mA~~-------aGA~l~~me~~q~~Pt~~~~  231 (570)
T PRK05675        161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTT--NALINTGDGVGMALR-------AGVPVQDIEMWQFHPTGIAG  231 (570)
T ss_pred             EEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCC--CCCCcCcHHHHHHHH-------cCCCeeCccceeeecceeCC


Q ss_pred             ---------HcCCcEEEEEeCCCcCCCCCHH----------HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec
Q 011787          235 ---------RLGSEVTVVEFAADIVPSMDGE----------IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA  295 (477)
Q Consensus       235 ---------~~g~~Vtli~~~~~~~~~~~~~----------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~  295 (477)
                               +--.-+.+-....+++...++.          ......+....+|..           ...+.+.+.+.+.
T Consensus       232 ~~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~-----------~~~~~v~ld~~~l  300 (570)
T PRK05675        232 AGVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCG-----------PNKDHVLLKLDHL  300 (570)
T ss_pred             CceEeeccccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCcc-----------CCCCEEEEEcCCC


Q ss_pred             CCCc-eEEEEcCEEEEee--cCCCCCCCCCccccceeecCCCCeecCCCCCC----------CCCCeEEecccCCCCCch
Q 011787          296 AGGE-KTILEADVVLVSA--GRTPFTAGLGLDKIGVETDKMGRIPVNERFAT----------NIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       296 ~~~~-~~~i~~D~vi~a~--G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t----------~~~~vya~GD~~~~~~~~  362 (477)
                      .... ...++.-.-....  |..|..+.  ++-..-..--.|++.+|...+|          ++||+||+|+|++.-...
T Consensus       301 ~~~~l~~~~~~~~~~~~~~~~~d~~~~~--i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hG  378 (570)
T PRK05675        301 GEEVLHSRLPGICELSKTFAHVDPVVAP--IPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHG  378 (570)
T ss_pred             CHHHHHHhccHHHHHHHHhcCCCcCCCc--eEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCC


Q ss_pred             ---------hHHHHHHHHHHHHHc
Q 011787          363 ---------HKAEEDGVACVEFLA  377 (477)
Q Consensus       363 ---------~~A~~~g~~aa~~i~  377 (477)
                               ..|...|++|++++.
T Consensus       379 anrlggnsl~~a~v~Gr~Ag~~aa  402 (570)
T PRK05675        379 ANRLGGNSLLDLVVFGRAAGLHLE  402 (570)
T ss_pred             ccccccccHHHHHHHHHHHHHHHH

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.74  E-value=0.0003  Score=71.78  Aligned_cols=94  Identities=19%  Similarity=0.249  Sum_probs=64.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+++...+..       .                               +   
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~-------~-------------------------------d---  221 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRG-------F-------------------------------D---  221 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccccc-------C-------------------------------C---
Confidence            4899999999999999999999999999986311100       0                               0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                               ......+...+++.+++++.+. +..+.  .....+...+|  .++.+|.|++|+|.+|.
T Consensus       222 ---------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        222 ---------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDG--TTELFDTVLYATGRKPD  279 (499)
T ss_pred             ---------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCC--CEEEcCEEEEeeCCCCC
Confidence                     0011123345566788888774 22232  23455665666  56899999999999985

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.74  E-value=0.0003  Score=71.33  Aligned_cols=96  Identities=17%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ..+++|||||+.|+.+|..+...   |.+|+|+++.+.+...                                     +
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------~  229 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------F  229 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-------------------------------------c
Confidence            36899999999999999876654   8999999985443100                                     0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      +            ..+...+...+++.+++++.+. +..+.   .....+.+.++  .++.+|.+++|+|.+|.
T Consensus       230 d------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       230 D------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG--KTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             C------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC--CEEEcCEEEEeeCCCcC
Confidence            0            0011223345566788888764 44443   22245555555  57999999999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.74  E-value=0.00019  Score=71.12  Aligned_cols=91  Identities=19%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             CCCeeEEEcccHHHHHHHHHHH-HcCCcEEEEEeCCCcCC-------CCC---HHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWA-RLGSEVTVVEFAADIVP-------SMD---GEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~-~~g~~Vtli~~~~~~~~-------~~~---~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      .+++|+|||+|+.|+.+|..|. +.|.+|+++++.+.+..       ...   +.+...+.+.+...++++..+..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            4789999999999999999764 67999999999988732       111   23444455556667788774433321 


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                             .+++      +.....+|.||+|+|..+.
T Consensus       117 -------Dvt~------eeL~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 -------DLKM------EELRNHYNCVIFCCGASEV  139 (506)
T ss_pred             -------ccCH------HHHHhcCCEEEEEcCCCCC
Confidence                   1111      1123378999999998864

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.74  E-value=4.2e-05  Score=80.69  Aligned_cols=42  Identities=36%  Similarity=0.597  Sum_probs=38.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ....+|+|||||++|++||+.|.+.|++|+|+|+++.+||..
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence            456899999999999999999999999999999999998864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.73  E-value=0.00096  Score=66.79  Aligned_cols=135  Identities=25%  Similarity=0.335  Sum_probs=83.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCcCC----------------------CCC----------HHHHHHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVP----------------------SMD----------GEIRKQF  261 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~~~----------------------~~~----------~~~~~~~  261 (477)
                      .+++|||+|++|+-+|..|++.|.. +.++++++.+..                      .++          .++...+
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~   88 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI   88 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence            5799999999999999999999998 999999864321                      000          1267777


Q ss_pred             HHHHHhcCcE--EEeCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCCccccceeecCCCC
Q 011787          262 QRSLEKQKMK--FMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLGLDKIGVETDKMGR  335 (477)
Q Consensus       262 ~~~l~~~gv~--~~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~--p~~~~l~~~~~gl~~~~~g~  335 (477)
                      .+.+++.++.  +..++.|..+..++  +...+++..  .+..+ +.+|.||+|+|.-  |+...    -.|++.- .|.
T Consensus        89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~--~~~~~-~~a~~vV~ATG~~~~P~iP~----~~G~~~f-~g~  160 (443)
T COG2072          89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD--GGTGE-LTADFVVVATGHLSEPYIPD----FAGLDEF-KGR  160 (443)
T ss_pred             HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC--CCeee-EecCEEEEeecCCCCCCCCC----CCCccCC-Cce
Confidence            7788776644  33445555555544  355566542  11222 7899999999963  33322    1222221 232


Q ss_pred             eecC----CCCCCCCCCeEEecccCC
Q 011787          336 IPVN----ERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       336 i~vd----~~l~t~~~~vya~GD~~~  357 (477)
                      +.=.    +..+-.-++|-+||--++
T Consensus       161 ~~HS~~~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         161 ILHSADWPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             EEchhcCCCccccCCCeEEEECCCcc
Confidence            2211    123345678999996653

>PLN02612 phytoene desaturase

Probab=97.73  E-value=5.3e-05  Score=78.35  Aligned_cols=44  Identities=32%  Similarity=0.441  Sum_probs=39.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      .....+|+|||||++|++||++|.+.|++|+|+|+++.+||.+.
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~  133 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA  133 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence            33457999999999999999999999999999999999999654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.73  E-value=3.9e-05  Score=77.69  Aligned_cols=40  Identities=25%  Similarity=0.474  Sum_probs=37.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      +|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   40 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS   40 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence            5899999999999999999999999999999999997543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.73  E-value=0.00038  Score=70.68  Aligned_cols=96  Identities=16%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+++. .+         .|.     .                       +   
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~---------l~~-----~-----------------------d---  219 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL---------LRG-----F-----------------------D---  219 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc---------ccc-----c-----------------------C---
Confidence            57999999999999999999999999999872 21         000     0                       0   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEecCCc-eEEEEecEEEEccCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGG-NTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~~g~-~~~i~~d~lvlAtG~~~~  189 (477)
                               ......+.+.+++.+++++.+. +..+.  .....+...++. ..++.+|.+++|+|.+|.
T Consensus       220 ---------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       220 ---------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             ---------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence                     0011223345667789888774 22332  234445544442 247999999999999885

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.73  E-value=0.00041  Score=68.65  Aligned_cols=95  Identities=19%  Similarity=0.252  Sum_probs=68.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----CC-------------------------C-----------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----SM-------------------------D-----------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----~~-------------------------~-----------  254 (477)
                      .|+|||+|+.|+.+|..+++.|.+|+++++.+.+..     .+                         +           
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            489999999999999999999999999997653210     00                         0           


Q ss_pred             ----HHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 ----GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ----~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                          ..+.+.+.+.+.+.|++++ ..++..+..+ ++.+.+++.     ++.++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~-----~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCA-----GGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeC-----CCCEEEeCEEEECCCCch
Confidence                1233444555566788886 5578888766 445555543     446899999999999887

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.73  E-value=0.00056  Score=67.79  Aligned_cols=97  Identities=25%  Similarity=0.344  Sum_probs=76.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------CCC-----------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------SMD-----------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------~~~-----------------------  254 (477)
                      .|+|||+|+.|.-+|..|++.|.+|.++++.+.+..                  .+.                       
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~   84 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV   84 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence            699999999999999999999999999999775421                  011                       


Q ss_pred             ----------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 ----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                                ..+-+++.+..++.|++++.+++++.+..+++++.+.+..    +..++.++.||.|.|...
T Consensus        85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRA----GDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEc----CCEEEEcCEEEECCCcch
Confidence                      1344556677788899999999999999888777665542    227899999999999543

>PRK07538 hypothetical protein; Provisional

Probab=97.72  E-value=3.8e-05  Score=76.67  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=32.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +||+|||||+||+++|..|++.|++|+|+|+.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            48999999999999999999999999999997654

>PLN02487 zeta-carotene desaturase

Probab=97.72  E-value=5.8e-05  Score=77.39  Aligned_cols=42  Identities=26%  Similarity=0.401  Sum_probs=38.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      .+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~  115 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG  115 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence            346999999999999999999999999999999999998653

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.71  E-value=0.00049  Score=68.25  Aligned_cols=99  Identities=19%  Similarity=0.383  Sum_probs=71.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCc---CCCC---------------------C-------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADI---VPSM---------------------D-------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~---~~~~---------------------~-------------  254 (477)
                      -+|+|||+|+.|+-+|..|++.   |.+|+++++....   .+.+                     +             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            3699999999999999999998   9999999984210   0000                     0             


Q ss_pred             ----------------------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEc
Q 011787          255 ----------------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEA  305 (477)
Q Consensus       255 ----------------------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~  305 (477)
                                                  .++.+.+.+.+.+ .|++++++++++++..+++++.+++.     ++..+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a  158 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD-----DGETLTG  158 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEe
Confidence                                        0111223333433 47999999999999877777777664     4467999


Q ss_pred             CEEEEeecCCCCC
Q 011787          306 DVVLVSAGRTPFT  318 (477)
Q Consensus       306 D~vi~a~G~~p~~  318 (477)
                      |.||.|.|..+..
T Consensus       159 ~~vI~AdG~~S~v  171 (395)
T PRK05732        159 RLLVAADGSHSAL  171 (395)
T ss_pred             CEEEEecCCChhh
Confidence            9999999987753

>PRK06996 hypothetical protein; Provisional

Probab=97.70  E-value=0.00043  Score=68.70  Aligned_cols=99  Identities=18%  Similarity=0.360  Sum_probs=75.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC----CcEEEEEeCCCcCCC-------CC-----------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG----SEVTVVEFAADIVPS-------MD-----------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g----~~Vtli~~~~~~~~~-------~~-----------------------------  254 (477)
                      .+|+|||||+.|+-+|..|++.|    .+|+++++.+...+.       +.                             
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~   91 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRG   91 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCC
Confidence            57999999999999999999987    469999986421000       00                             


Q ss_pred             -----------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787          255 -----------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       255 -----------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                                             ..+.+.+.+.+++.|+++..++++++++.+++++.+++.+.  +.++++.+|+||-|
T Consensus        92 ~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~--~g~~~i~a~lvIgA  169 (398)
T PRK06996         92 HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTP--QGARTLRARIAVQA  169 (398)
T ss_pred             CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCC--CcceEEeeeEEEEC
Confidence                                   24556667777888999999999999988888888776421  11268999999999


Q ss_pred             ecCC
Q 011787          312 AGRT  315 (477)
Q Consensus       312 ~G~~  315 (477)
                      .|..
T Consensus       170 DG~~  173 (398)
T PRK06996        170 EGGL  173 (398)
T ss_pred             CCCC
Confidence            9963

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.70  E-value=0.00038  Score=67.38  Aligned_cols=98  Identities=16%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ...|+++|+|..|+-+|..|...+++|++|++.+.+         .|.        .                       
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------~~~--------l-----------------------  252 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------LPR--------L-----------------------  252 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------hhh--------h-----------------------
Confidence            567999999999999999999999999999984321         111        0                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEE-e----cCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-I----SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~----~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                              ....+.+.++.++++++|+++.+++.. +    +.+...|.+.+|  .++.+|.||+.+|.+|..
T Consensus       253 --------f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  253 --------FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             --------hhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--CEeccCeEEEeecccccc
Confidence                    012244556778889999999986532 2    234567788888  899999999999999953

>PRK13748 putative mercuric reductase; Provisional

Probab=97.68  E-value=0.00046  Score=71.86  Aligned_cols=95  Identities=18%  Similarity=0.288  Sum_probs=64.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|.+.|.+|+|+++...+          |.     .                       +  
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----------~~-----~-----------------------d--  309 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----------FR-----E-----------------------D--  309 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----------cc-----c-----------------------C--
Confidence            358999999999999999999999999999873211          00     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+ .+..+.  ...+.+.+.++   ++.+|.+++|+|.+|..
T Consensus       310 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        310 ----------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG---ELRADKLLVATGRAPNT  367 (561)
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC---eEEeCEEEEccCCCcCC
Confidence                      001122334556678888876 344442  33445554443   58999999999999863

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.68  E-value=0.00011  Score=77.32  Aligned_cols=91  Identities=26%  Similarity=0.316  Sum_probs=68.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.++.+...+.+++.|+++++++.+. .  
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence            46899999999999999999999999999999887641       2  2355666666778888999999887542 1  


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                           .+.+.      .....+|.|++|+|..+.
T Consensus       269 -----dv~~~------~~~~~~DaVilAtGa~~~  291 (652)
T PRK12814        269 -----DITLE------ELQKEFDAVLLAVGAQKA  291 (652)
T ss_pred             -----ccCHH------HHHhhcCEEEEEcCCCCC
Confidence                 11111      112348999999998764

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.67  E-value=5.6e-05  Score=73.67  Aligned_cols=35  Identities=34%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      .||+|||||++|+.||+.|++.|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            58999999999999999999999999999976544

>PTZ00058 glutathione reductase; Provisional

Probab=97.67  E-value=0.00047  Score=70.89  Aligned_cols=97  Identities=14%  Similarity=0.172  Sum_probs=64.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+..|..|++.|.+|+|+++.+.+.         |.                            ++  
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il---------~~----------------------------~d--  277 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL---------RK----------------------------FD--  277 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc---------cc----------------------------CC--
Confidence            4689999999999999999999999999999854321         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC---CEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+...+++.+++++.+. +..++.   ..+.+...++ ..++.+|.|++|+|.+|.
T Consensus       278 ----------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~-~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        278 ----------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG-RKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC-CEEEECCEEEECcCCCCC
Confidence                      0011112344566788887764 344432   1244443333 257999999999998875

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.66  E-value=0.00015  Score=78.35  Aligned_cols=90  Identities=27%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS  284 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~  284 (477)
                      +++|+|||||+.|+.+|..|++.|.+|+++++.+.+.       |  .++.+......+.+.+.||+++++....     
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence            5789999999999999999999999999999876542       2  1244555555667778899998774210     


Q ss_pred             CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       285 ~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                           +.+.     +.....+|.|++|+|..+..
T Consensus       612 -----~~ve-----~l~~~gYDaVIIATGA~~~~  635 (1012)
T TIGR03315       612 -----LTVA-----ELKNQGYKYVILAIGAWKHG  635 (1012)
T ss_pred             -----eEhh-----hhhcccccEEEECCCCCCCC
Confidence                 1111     12345689999999987543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.64  E-value=8.1e-05  Score=71.84  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=37.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~   84 (477)
                      ...+|||||||.||++||.+|.+.| .+++|+|..+++||....
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t   63 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT   63 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence            3468999999999999999999876 579999999999997543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.64  E-value=0.00077  Score=68.91  Aligned_cols=95  Identities=20%  Similarity=0.354  Sum_probs=66.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC-Cc--CC---C---------------C--------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-DI--VP---S---------------M--------------------  253 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~--~~---~---------------~--------------------  253 (477)
                      -.|+|||||+.|+++|..+++.|.+|.+++++. .+  ++   .               +                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            369999999999999999999999999999873 11  00   0               0                    


Q ss_pred             -------------CH-HHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          254 -------------DG-EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       254 -------------~~-~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                                   |. .+...+.+.+++. |++++ ...+.++..+++.+. +.+.     ++..+.|+.||+|+|..
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~-----dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQ-----DGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEEC-----CCCEEECCEEEEeeCcc
Confidence                         00 0123333444444 78875 567888776666654 5443     45789999999999953

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.62  E-value=0.00015  Score=76.19  Aligned_cols=91  Identities=26%  Similarity=0.403  Sum_probs=70.3

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .+++++.+...+.+++.|+++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            47899999999999999999999999999999888642       1  35667777677888899999999886631   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                           .+.+.      .....+|.|++|+|..+.
T Consensus       386 -----~~~~~------~l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 -----DITFS------DLTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             -----cCCHH------HHHhcCCEEEEeCCCCCC
Confidence                 11111      123468999999998653

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.62  E-value=0.00051  Score=67.40  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHcCCcEE------EEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC--C-eEE--EEE
Q 011787          224 YIGLEMGSVWARLGSEVT------VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG--D-GVK--LTL  292 (477)
Q Consensus       224 ~~g~e~a~~l~~~g~~Vt------li~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~-~~~--v~~  292 (477)
                      .+++|+-..+.++=..+.      -+.+..  . .--+.+..-+.+.|+++||+|.++++|+.++-+.  + ++.  +++
T Consensus       173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~--Y-NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~  249 (500)
T PF06100_consen  173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTK--Y-NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHI  249 (500)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCccccccCc--c-ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEE
Confidence            578898888877632221      111111  1 1124677788999999999999999999987642  2 222  333


Q ss_pred             eecCCCceEEEE---cCEEEEeecCCCCC
Q 011787          293 EPAAGGEKTILE---ADVVLVSAGRTPFT  318 (477)
Q Consensus       293 ~~~~~~~~~~i~---~D~vi~a~G~~p~~  318 (477)
                      .  .+|..+.++   -|+|++..|..-..
T Consensus       250 ~--~~g~~~~i~l~~~DlV~vT~GS~t~~  276 (500)
T PF06100_consen  250 E--QDGKEETIDLGPDDLVFVTNGSMTEG  276 (500)
T ss_pred             E--cCCCeeEEEeCCCCEEEEECCccccc
Confidence            2  333444443   68899988865443

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.61  E-value=0.00056  Score=68.33  Aligned_cols=97  Identities=15%  Similarity=0.262  Sum_probs=68.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCcCCC-----CCH-------------HH-------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPS-----MDG-------------EI-------------------  257 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~~~-----~~~-------------~~-------------------  257 (477)
                      +|+|||||+.|+-+|..|++.| .+|+++++.+.+.+.     +.+             .+                   
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6899999999999999999998 599999988764210     000             00                   


Q ss_pred             ----------------------HHHHHHHHHhc--CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          258 ----------------------RKQFQRSLEKQ--KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       258 ----------------------~~~~~~~l~~~--gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                                            ...+.+.|.+.  ...++++++|++++.+++++.+.+.     ++.++++|.||.|.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vVgADG  156 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFT-----DGTEYRCDLLIGADG  156 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEc-----CCCEEEeeEEEECCC
Confidence                                  01112222221  3557788999999877777777765     456899999999999


Q ss_pred             CCCC
Q 011787          314 RTPF  317 (477)
Q Consensus       314 ~~p~  317 (477)
                      ....
T Consensus       157 ~~S~  160 (414)
T TIGR03219       157 IKSA  160 (414)
T ss_pred             ccHH
Confidence            7764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.59  E-value=0.00016  Score=76.37  Aligned_cols=90  Identities=29%  Similarity=0.423  Sum_probs=67.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |  .++.++.....+.+++.|+++++++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            46899999999999999999999999999999877642       2  24566666667778888999998886621   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                           .+.+.      .....+|.|++|+|..+
T Consensus       403 -----~i~~~------~~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 -----DISLE------SLLEDYDAVFVGVGTYR  424 (654)
T ss_pred             -----cCCHH------HHHhcCCEEEEeCCCCC
Confidence                 01111      11246999999999754

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.59  E-value=0.00076  Score=66.23  Aligned_cols=96  Identities=21%  Similarity=0.338  Sum_probs=71.4

Q ss_pred             eeEEEcccHHHHHHHHHH--HHcCCcEEEEEeCCCc--CC-----CCC--------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVW--ARLGSEVTVVEFAADI--VP-----SMD--------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l--~~~g~~Vtli~~~~~~--~~-----~~~--------------------------------  254 (477)
                      .|+|||+|+.|+.+|..+  .+.|.+|.++++.+..  -+     .+.                                
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            379999999999999999  7789999999876654  10     000                                


Q ss_pred             ------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 ------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 ------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                            ..+.+.+.+.+...| .+..++.|.+|+..++...+.+.     ++.++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~-----~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLA-----DGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEEC-----CCCEEEeeEEEECCCcccc
Confidence                  234445556666444 45678999999888776666665     5679999999999996654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.58  E-value=0.00013  Score=74.06  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      |||+|||+||+|+++|..|++.|++|++||++...||.|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999988887654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02546 glutathione reductase

Probab=97.58  E-value=0.00092  Score=68.78  Aligned_cols=97  Identities=14%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+..|..|.+.+.+|+|+++.+.+...              ..                         
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~--------------~d-------------------------  292 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG--------------FD-------------------------  292 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc--------------cC-------------------------
Confidence            468999999999999999999999999999985432100              00                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ......+...+++.+|+++.+. +..+.   ...+.+...++  ....+|.+++|+|.+|..
T Consensus       293 ----------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g--~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        293 ----------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG--TVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             ----------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe--EEEecCEEEEeeccccCC
Confidence                      0011223345667789988763 33332   33344554443  445589999999999853

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.56  E-value=8.8e-05  Score=76.87  Aligned_cols=36  Identities=36%  Similarity=0.545  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .++.+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999999999999999964

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.56  E-value=0.0015  Score=64.68  Aligned_cols=103  Identities=20%  Similarity=0.332  Sum_probs=70.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCC--------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD--------------------------------  254 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~--------------------------------  254 (477)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+...+       .+.                                
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG   81 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence            35799999999999999999999999999998874110       000                                


Q ss_pred             ---------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787          255 ---------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       255 ---------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                                           ..+...+.+.+.+.|+.++++.++..+.. +++...+++..  ++...++++|+||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~--~g~~~~i~adlvIGAD  159 (390)
T TIGR02360        82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFER--DGERHRLDCDFIAGCD  159 (390)
T ss_pred             EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEE--CCeEEEEEeCEEEECC
Confidence                                 01123334445556788888877766643 44455565531  2333479999999999


Q ss_pred             cCCCCC
Q 011787          313 GRTPFT  318 (477)
Q Consensus       313 G~~p~~  318 (477)
                      |.....
T Consensus       160 G~~S~V  165 (390)
T TIGR02360       160 GFHGVS  165 (390)
T ss_pred             CCchhh
Confidence            987754

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN03000 amine oxidase

Probab=97.53  E-value=0.00012  Score=77.37  Aligned_cols=42  Identities=33%  Similarity=0.583  Sum_probs=39.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ...+|+|||||++|+.||..|.+.|++|+|+|+++.+||.+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence            468999999999999999999999999999999999998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.52  E-value=0.00032  Score=71.41  Aligned_cols=80  Identities=26%  Similarity=0.298  Sum_probs=63.7

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL  292 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~  292 (477)
                      .+++++|+|+|.+|+++|..|++.|.+|+++++.+.       +....+.+.+++.|++++++..+.             
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence            367899999999999999999999999999986642       334455667888899998765432             


Q ss_pred             eecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          293 EPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       293 ~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                              ....+|.||+++|..|+.+.
T Consensus        75 --------~~~~~D~Vv~s~Gi~~~~~~   94 (480)
T PRK01438         75 --------LPEDTDLVVTSPGWRPDAPL   94 (480)
T ss_pred             --------ccCCCCEEEECCCcCCCCHH
Confidence                    02348999999999999874

>PRK11445 putative oxidoreductase; Provisional

Probab=97.52  E-value=0.002  Score=62.70  Aligned_cols=99  Identities=12%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--C-------CCCH-------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-------SMDG-------------------------------  255 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~-------~~~~-------------------------------  255 (477)
                      +|+|||+|+.|+-+|..|++. .+|+++++.+...  +       .+.+                               
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            589999999999999999998 9999999876320  0       0000                               


Q ss_pred             ------------------HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          256 ------------------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       256 ------------------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                                        ++.+.+.+ ..+.|++++.++.+++++.+++++.+++..  ++...++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~--~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRA--DGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEec--CCcEEEEEeCEEEECCCCCcH
Confidence                              01111112 234689999999999998877777776531  233347999999999998765


Q ss_pred             C
Q 011787          318 T  318 (477)
Q Consensus       318 ~  318 (477)
                      .
T Consensus       159 v  159 (351)
T PRK11445        159 V  159 (351)
T ss_pred             H
Confidence            4

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.49  E-value=0.0017  Score=58.74  Aligned_cols=41  Identities=27%  Similarity=0.456  Sum_probs=35.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCC------CeEEEEecCCCCCc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGG   80 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g------~~V~lie~~~~~GG   80 (477)
                      +....+|+|||||..|+.+|+.|.+.+      ..|+|+|+....||
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            344589999999999999999999885      78999999776654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.47  E-value=0.0023  Score=63.48  Aligned_cols=101  Identities=19%  Similarity=0.278  Sum_probs=66.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----CC----------C---------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----SM----------D---------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----~~----------~---------------------------  254 (477)
                      +|+|||+|+.|.-+|..+++.|.+|.++++.+.+..    .+          +                           
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            589999999999999999999999999998744210    00          0                           


Q ss_pred             -----------HHHHHHHHHHHHhcCcEEEeCceEEEEEE---cCCeEEEEEeecC----CCceEEEEcCEEEEeecCCC
Q 011787          255 -----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDL---SGDGVKLTLEPAA----GGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 -----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v~~~~~~----~~~~~~i~~D~vi~a~G~~p  316 (477)
                                 ..+.+.+.+...+.|++++.++ +..+..   .++...+++....    .+...++.++.||.|+|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                       0112234445566789987664 666642   2234445443211    13345899999999999755


Q ss_pred             C
Q 011787          317 F  317 (477)
Q Consensus       317 ~  317 (477)
                      .
T Consensus       161 ~  161 (398)
T TIGR02028       161 R  161 (398)
T ss_pred             H
Confidence            3

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.46  E-value=0.0001  Score=70.04  Aligned_cols=63  Identities=16%  Similarity=0.339  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEEc--CCeEE-EEEeecCCC-ceEEEEcCEEEEeecCCCCCC
Q 011787          257 IRKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGG-EKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~-v~~~~~~~~-~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      ....+...++..++++++++.|++|..+  ++++. |++.+.... ....+.++.||+|.|.--...
T Consensus       195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~  261 (296)
T PF00732_consen  195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPR  261 (296)
T ss_dssp             HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHH
T ss_pred             hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChh
Confidence            3455666676669999999999999553  55544 555543332 245788899999999644433

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.45  E-value=0.001  Score=69.55  Aligned_cols=34  Identities=21%  Similarity=0.124  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      .+++|||||+.|+..|..|.+.|.+|+|||+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~  346 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ  346 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            5899999999999999999999999999998554

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.45  E-value=0.00072  Score=66.16  Aligned_cols=94  Identities=24%  Similarity=0.368  Sum_probs=63.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcCC-----CCCHHHH----H-------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP-----SMDGEIR----K-------------------------  259 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~-----~~~~~~~----~-------------------------  259 (477)
                      .|+|||+|+.|+.+|..|++.  |.+|.++++.+.+.+     .+..+..    .                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            379999999999999999987  999999998774422     1111111    0                         


Q ss_pred             ---------HHHHH-HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          260 ---------QFQRS-LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       260 ---------~~~~~-l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                               .+.+. +++.+..++++++|.++  +++++.+  .     +++++.+|.||.|.|..+..
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~-----dg~~~~A~~VI~A~G~~s~~  140 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--A-----PGTRINARSVIDCRGFKPSA  140 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--C-----CCCEEEeeEEEECCCCCCCc
Confidence                     11112 22223346778888888  3444443  3     56799999999999988643

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.44  E-value=0.002  Score=71.24  Aligned_cols=106  Identities=19%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------C---C-HHHHHHHHHHHHhc-CcEEEeCceEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------M---D-GEIRKQFQRSLEKQ-KMKFMLKTKVVGV  281 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------~---~-~~~~~~~~~~l~~~-gv~~~~~~~v~~i  281 (477)
                      ..+|+|||+|+.|+..|..+++.|.+|++++..+.+...       .   + .+....+.+.++.. +++++.+++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            467999999999999999999999999999987655321       1   1 23334455556555 5999999999887


Q ss_pred             EEcCCeEE-EE-Eee-------c-CCCceEEEEcCEEEEeecCCCCCCC
Q 011787          282 DLSGDGVK-LT-LEP-------A-AGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       282 ~~~~~~~~-v~-~~~-------~-~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ... +.+. +. ...       . .......+.+|.||+|||..|....
T Consensus       243 ~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p  290 (985)
T TIGR01372       243 YDH-NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV  290 (985)
T ss_pred             ecC-CeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC
Confidence            532 2221 11 000       0 0011236899999999999886543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.44  E-value=0.0039  Score=62.62  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=68.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-C-----------C--CC------------------------
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-P-----------S--MD------------------------  254 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-~-----------~--~~------------------------  254 (477)
                      ..-+|+|||||+.|.-+|..|++.|.+|.++++.+... +           .  ++                        
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~  117 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG  117 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence            34579999999999999999999999999999875321 0           0  00                        


Q ss_pred             --------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEc---CCeEEEEEeec----CCCceEEEEcCEEEEeec
Q 011787          255 --------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPA----AGGEKTILEADVVLVSAG  313 (477)
Q Consensus       255 --------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~----~~~~~~~i~~D~vi~a~G  313 (477)
                                    ..+.+.+.+..++.|++++.+ .+.+++..   ++.+.+++...    ..++..++++|+||-|.|
T Consensus       118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                          012223444556678888755 56666532   23455555421    013346899999999999


Q ss_pred             CCCC
Q 011787          314 RTPF  317 (477)
Q Consensus       314 ~~p~  317 (477)
                      ....
T Consensus       197 ~~S~  200 (450)
T PLN00093        197 ANSR  200 (450)
T ss_pred             cchH
Confidence            6553

>PLN02976 amine oxidase

Probab=97.43  E-value=0.0002  Score=78.73  Aligned_cols=43  Identities=33%  Similarity=0.675  Sum_probs=39.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t  734 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT  734 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence            3589999999999999999999999999999999999998654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.38  E-value=0.00025  Score=70.48  Aligned_cols=89  Identities=34%  Similarity=0.432  Sum_probs=70.8

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++|+|||+|+.|+.+|..|++.|+.||++++.+...       |  .++.++.+...+.|++.|++|+.++++-.   
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence            36899999999999999999999999999999888762       2  35678889999999999999999887641   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                           .+++      +...-+.|.|++++|..
T Consensus       199 -----~it~------~~L~~e~Dav~l~~G~~  219 (457)
T COG0493         199 -----DITL------EELLKEYDAVFLATGAG  219 (457)
T ss_pred             -----cCCH------HHHHHhhCEEEEecccc
Confidence                 1111      11234459999999954

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.38  E-value=0.00022  Score=68.19  Aligned_cols=52  Identities=35%  Similarity=0.569  Sum_probs=46.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchh
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA   92 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~   92 (477)
                      .+.||++|||+|+-||.||..|++.|.+|+++|++...||-.+...-+|...
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfK   63 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFK   63 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccc
Confidence            4579999999999999999999999999999999989999888887777543

>PRK02106 choline dehydrogenase; Validated

Probab=97.38  E-value=0.00021  Score=74.19  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRG   76 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~   76 (477)
                      +...+|+||||||+||+.+|.+|++ .|.+|+|+|+..
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            4567999999999999999999999 699999999964

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.37  E-value=0.0006  Score=70.86  Aligned_cols=91  Identities=24%  Similarity=0.315  Sum_probs=66.2

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceE-EEE
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKV-VGV  281 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v-~~i  281 (477)
                      ..+++|+|||+|++|+.+|..+++.|.+|+++++.+.+.       |  .++.+....-.+.+++.|+++..++.+ ..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            347899999999999999999999999999999876542       1  234455555556677889999888765 322


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      ..+               .....+|.|++|+|..+.
T Consensus       215 ~~~---------------~~~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        215 TLE---------------QLEGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CHH---------------HHHhhCCEEEEeeCCCCC
Confidence            111               011248999999998754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.36  E-value=0.0031  Score=55.16  Aligned_cols=107  Identities=20%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCC-------------------------------H
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------G  255 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~-------------------------------~  255 (477)
                      ...++|||+|++|+.+|..|++.|.+|.+++++..+..       .|+                               .
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            35699999999999999999999999999998876521       111                               1


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEee--c----CCCceEEEEcCEEEEeecCCCCCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEP--A----AGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~--~----~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +....+....-+.|++++....|..+-..+ +++. +.+..  .    ..-|...+++..||-|||.....-.
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~  169 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR  169 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence            233333333334899999999999886665 5655 33321  0    0124568999999999998776543

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.35  E-value=0.00034  Score=64.30  Aligned_cols=42  Identities=36%  Similarity=0.631  Sum_probs=37.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--CCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--ALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--~~GG~~~   83 (477)
                      ..+||+|||+|.||+-||.+|+..|++|+|+|++.  .+||+..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            46899999999999999999999999999999865  4787654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.35  E-value=0.0031  Score=53.52  Aligned_cols=92  Identities=21%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             EEEcccHHHHHHHHHHHHc-----CCcEEEEEeCCCc--CC-------------------CC---C-HHHHHHH------
Q 011787          218 VVIGAGYIGLEMGSVWARL-----GSEVTVVEFAADI--VP-------------------SM---D-GEIRKQF------  261 (477)
Q Consensus       218 ~IiG~G~~g~e~a~~l~~~-----g~~Vtli~~~~~~--~~-------------------~~---~-~~~~~~~------  261 (477)
                      +|||+|++|+-++..|.+.     ..+|+++++.+.-  .+                   .+   + .++.+++      
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            5899999999999999877     3478899875431  00                   00   0 1122221      


Q ss_pred             ------------------------HHHHH--hcCcEEE-eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          262 ------------------------QRSLE--KQKMKFM-LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       262 ------------------------~~~l~--~~gv~~~-~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                                              .+.++  ..|+++. ...+|+.+...+++..+.+.     ++..+.+|.||+|+|.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~-----~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTA-----DGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEEC-----CCCEEEeCEEEECCCC
Confidence                                    11111  2354443 25689999988888777665     5678999999999995

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.32  E-value=0.00024  Score=71.09  Aligned_cols=97  Identities=24%  Similarity=0.377  Sum_probs=28.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--------C-----------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--------S-----------------------------------  252 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------~-----------------------------------  252 (477)
                      .|+|||||+.|+-.|..+++.|.+|.|+++.+.+..        .                                   
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            489999999999999999999999999998886520        0                                   


Q ss_pred             ------CCHH-HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          253 ------MDGE-IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       253 ------~~~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                            ++++ ....+.+.+++.|+++++++.+.++..+++++. +.+.+..  ...++.++.+|-|+|.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~--g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS--GRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence                  1111 112244566678999999999999988876665 5554322  2678999999999994

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.32  E-value=0.0047  Score=63.26  Aligned_cols=102  Identities=18%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CC--------------------------------C-
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SM--------------------------------D-  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~--------------------------------~-  254 (477)
                      ..|+|||+|..|+-.|..+++.|.+|.++++.+....       .+                                + 
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~  141 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK  141 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            4699999999999999999999999999987654210       00                                0 


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC
Q 011787          255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD  286 (477)
Q Consensus       255 ------------------------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~  286 (477)
                                                                      ..+...+.+.+++.|++++++++++++..+++
T Consensus       142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g  221 (506)
T PRK06481        142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG  221 (506)
T ss_pred             HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC
Confidence                                                            01233445556678999999999999987666


Q ss_pred             eEE-EEEeecCCCceEEEEcCEEEEeec-CCCC
Q 011787          287 GVK-LTLEPAAGGEKTILEADVVLVSAG-RTPF  317 (477)
Q Consensus       287 ~~~-v~~~~~~~~~~~~i~~D~vi~a~G-~~p~  317 (477)
                      ++. +.+.. .++....+.++.||+|+| +.+|
T Consensus       222 ~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n  253 (506)
T PRK06481        222 KVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN  253 (506)
T ss_pred             EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence            543 44432 222345799999999998 5554

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.32  E-value=0.0003  Score=66.98  Aligned_cols=40  Identities=38%  Similarity=0.509  Sum_probs=35.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCcee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTC   82 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~   82 (477)
                      .++|+|+|||.+||++|++|++++  ..|+|+|..+++||-.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi   52 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI   52 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence            479999999999999999999995  4577899999999953

>PRK13984 putative oxidoreductase; Provisional

Probab=97.30  E-value=0.0008  Score=70.61  Aligned_cols=90  Identities=30%  Similarity=0.337  Sum_probs=67.4

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+...       +  .++.++.....+.+++.|++++.++.+..   
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK---  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence            47889999999999999999999999999999877542       1  13445555556778889999999887732   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                       +    +.+.      .....+|.||+|+|..+
T Consensus       359 -~----~~~~------~~~~~yD~vilAtGa~~  380 (604)
T PRK13984        359 -D----IPLE------ELREKHDAVFLSTGFTL  380 (604)
T ss_pred             -c----CCHH------HHHhcCCEEEEEcCcCC
Confidence             0    1111      12357999999999763

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.28  E-value=0.002  Score=60.54  Aligned_cols=144  Identities=16%  Similarity=0.263  Sum_probs=87.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||.-||..+.--.++|.+|++||--+.+||..                                     |  
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m-------------------------------------D--  251 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM-------------------------------------D--  251 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc-------------------------------------C--
Confidence            4689999999999999999999999999999866665531                                     0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEe---cCCceEEEEecEEEEccCCCCCCCCCCc
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDT---IEGGNTVVKGKNIIIATGSDVKSLPGIT  195 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~---~~g~~~~i~~d~lvlAtG~~~~~~~g~~  195 (477)
                                .++.+.....+.+.+++|..++ +....   +..+.+..   .+++..++++|.+++|+|-+|.. .|++
T Consensus       252 ----------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t-~GLg  320 (506)
T KOG1335|consen  252 ----------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT-EGLG  320 (506)
T ss_pred             ----------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc-cCCC
Confidence                      0122223455666788888774 33322   22444443   34566889999999999999852 3443


Q ss_pred             cCCceEecchhhhcc------cCCCCeeEEEcccHHHHHHHHHHHHcC
Q 011787          196 IDEKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLG  237 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~------~~~~~~v~IiG~G~~g~e~a~~l~~~g  237 (477)
                      .+...+.. +...+.      ...--++-.||--..|.-+|......|
T Consensus       321 le~iGi~~-D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeeg  367 (506)
T KOG1335|consen  321 LEKIGIEL-DKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEG  367 (506)
T ss_pred             hhhccccc-ccccceeccccccccCCceEEecccCCcchhhhhhhhhc
Confidence            32222211 111111      111234666665555555555544444

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.26  E-value=0.0021  Score=65.58  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+++|||+|.+|+++|..|++.|.+|+++|+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~   48 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG   48 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            458999999999999999999999999999973

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.23  E-value=0.0055  Score=62.76  Aligned_cols=96  Identities=23%  Similarity=0.396  Sum_probs=64.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---C---------------C---C---------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---P---------------S---M---------------------  253 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~---------------~---~---------------------  253 (477)
                      .|+|||+|+.|+++|..+++.|.+|.++++.....   +               .   +                     
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999998753210   0               0   0                     


Q ss_pred             ------------CH-HHHHHHHHHHHhc-CcEEEeCceEEEEEEc-CCeE-EEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 ------------DG-EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLS-GDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ------------~~-~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~-~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                                  |+ .+...+.+.+++. ++.++.+ .+.++..+ ++.+ .+.+.     ++..+.||.||+|+|...+
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~-----~G~~I~Ad~VILATGtfL~  155 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQ-----DGLKFRAKAVIITTGTFLR  155 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEEC-----CCCEEECCEEEEccCcccC
Confidence                        00 1123444556655 7888754 66666543 3333 35543     4568999999999997753

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.23  E-value=0.001  Score=71.04  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=32.5

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      ..+++|+|||+|+.|+.+|..|++.|.+|+++++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            35799999999999999999999999999999975

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.21  E-value=0.00037  Score=74.85  Aligned_cols=34  Identities=32%  Similarity=0.538  Sum_probs=31.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGA   77 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~   77 (477)
                      ++|+||||||||+++|..|++.  |++|+|+|++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            3799999999999999999998  899999999765

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.17  E-value=0.0012  Score=64.01  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCCHH------HHHHHHHHHHhcCcEEEeCceEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMDGE------IRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .++++|||||..|++.|..|+..|.+|+++++.+.+..       .|+..      +...+.+.-...+|++++.++|.+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            68999999999999999999999999999999987732       12211      222334444556899999999999


Q ss_pred             EEEcCCeEEEEEe
Q 011787          281 VDLSGDGVKLTLE  293 (477)
Q Consensus       281 i~~~~~~~~v~~~  293 (477)
                      +.+.-+.+++.++
T Consensus       204 v~G~vGnF~vki~  216 (622)
T COG1148         204 VSGSVGNFTVKIE  216 (622)
T ss_pred             ecccccceEEEEe
Confidence            9887777666553

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0068  Score=61.17  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             EEEEeCCCcCCCCCH-HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          241 TVVEFAADIVPSMDG-EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       241 tli~~~~~~~~~~~~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+....+-   .+|| .+...+....++.|..++.++.|+++....++.. |++.      -..+++..++.|+|+..
T Consensus       175 ~Ly~P~DG---~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~------~G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  175 GLYSPGDG---VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETP------HGSIETECVVNAAGVWA  243 (856)
T ss_pred             eeecCCCc---ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceecc------CcceecceEEechhHHH
Confidence            45544443   2344 4567778888899999999999999987655433 4432      24799999999999654

>PLN02985 squalene monooxygenase

Probab=97.13  E-value=0.01  Score=60.78  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++..
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3469999999999999999999999999999864

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.10  E-value=0.00027  Score=60.66  Aligned_cols=38  Identities=45%  Similarity=0.608  Sum_probs=33.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG   80 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG   80 (477)
                      ..||+|||+|.||++||+.+.++  +.+|.|||..-.+||
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG  115 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG  115 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence            46999999999999999999855  789999998666664

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.08  E-value=0.0019  Score=63.47  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=31.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +|+|||||..|+++|..|++.|.+|+++++++..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999987764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.08  E-value=0.007  Score=63.09  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=32.9

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ....+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            346789999999999999999999999999999865

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.98  E-value=0.0025  Score=57.19  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----------CCC----------HHHHHH---------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------SMD----------GEIRKQ---------------  260 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------~~~----------~~~~~~---------------  260 (477)
                      +|+|||+|..|+-+|..|+..|.+|++++++.-+..          .+|          +-+.+.               
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            589999999999999999999999999998764421          111          111111               


Q ss_pred             ---------------------------HHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          261 ---------------------------FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       261 ---------------------------~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                                                 +.+.|. ...++.++++|+++...++..+++.++    .+....+|.|++++.
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-tdL~V~~~~rVt~v~~~~~~W~l~~~~----g~~~~~~d~vvla~P  157 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-TDLTVVLETRVTEVARTDNDWTLHTDD----GTRHTQFDDVVLAIP  157 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHHHHHHh-ccchhhhhhhhhhheecCCeeEEEecC----CCcccccceEEEecC
Confidence                                       112222 245567788888887777777777642    456789999999987


Q ss_pred             CCC
Q 011787          314 RTP  316 (477)
Q Consensus       314 ~~p  316 (477)
                      .-.
T Consensus       158 APQ  160 (331)
T COG3380         158 APQ  160 (331)
T ss_pred             CCc
Confidence            533

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.96  E-value=0.017  Score=60.21  Aligned_cols=52  Identities=15%  Similarity=0.177  Sum_probs=36.1

Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +.+++.|++++.++.++++..+++++. +...+..++....+.++.||+|+|-
T Consensus       137 ~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       137 EQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            344556899999999999876666554 3332222334457899999999994

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0078  Score=52.44  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=72.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC--------C--------cCCCC-----CHHHHHHHHHHHHhcCcEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA--------D--------IVPSM-----DGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~--------~--------~~~~~-----~~~~~~~~~~~l~~~gv~~  272 (477)
                      ..+|+|||+|+.+...|..+++...+..+++..-        +        .+|.|     .+++.+.++++-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            4689999999999999988888766655554210        0        12333     3688888899989999998


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      ++ ..|.+++.+..-..+..      +.+.+.+|.||+|+|.....-
T Consensus        88 ~t-EtVskv~~sskpF~l~t------d~~~v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   88 IT-ETVSKVDLSSKPFKLWT------DARPVTADAVILATGASAKRL  127 (322)
T ss_pred             ee-eehhhccccCCCeEEEe------cCCceeeeeEEEecccceeee
Confidence            84 56777876666665543      457899999999999766443

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.92  E-value=0.018  Score=60.62  Aligned_cols=51  Identities=16%  Similarity=0.277  Sum_probs=36.6

Q ss_pred             HHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          264 SLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       264 ~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      .+++.||++++++.++++..+++++. +.+.+..++....+.++.||+|||-
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            45567899999999999876666554 4443323344457999999999983

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.91  E-value=0.024  Score=55.12  Aligned_cols=119  Identities=11%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             CCeEEEEecCCCCC--------ceeeccCccCchhhhh----hhH---------HHHHHHhhhhhCCccccccccChHHH
Q 011787           66 GLKTTCIEKRGALG--------GTCLNVGCIPSKALLH----SSH---------MYHEAMHSFASHGVKFSSVEVDLPAM  124 (477)
Q Consensus        66 g~~V~lie~~~~~G--------G~~~~~~~~p~~~l~~----~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~  124 (477)
                      |.+|+|+|+++.+|        |.|.....-+...+..    ...         ...+....+.+.|+......  -..+
T Consensus         1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~--~grv   78 (376)
T TIGR03862         1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGS--SGRV   78 (376)
T ss_pred             CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECC--CCEE
Confidence            56899999999886        7887665432211110    011         12345566777787532110  0111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          125 MAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      ++... ....+...+...+++.+|++..+ .+..++.....+.+..+ ...+.+|+||||||+.+
T Consensus        79 fP~S~-~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        79 FPVEM-KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCCCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence            11111 12233444556677889999887 45566555566665433 24689999999999864

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.91  E-value=0.02  Score=59.45  Aligned_cols=53  Identities=8%  Similarity=0.053  Sum_probs=37.3

Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +.+.+++.||++++++.++++..+++++. +...+..++....+.++.||+|||
T Consensus       142 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        142 LFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence            44445556899999999999877666655 444333333445789999999998

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.88  E-value=0.021  Score=57.50  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=37.6

Q ss_pred             HHHHHHHHhcCcEEEeCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          259 KQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +.+.+.+++.|++++++++++++..++ +++. +.+.. ..+....+.++.||+|+|-.
T Consensus       134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~  191 (439)
T TIGR01813       134 QKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGF  191 (439)
T ss_pred             HHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCC
Confidence            334455667899999999999998754 3343 44432 22223458899999999943

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07233 hypothetical protein; Provisional

Probab=96.79  E-value=0.019  Score=57.65  Aligned_cols=34  Identities=35%  Similarity=0.559  Sum_probs=31.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +|+|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQL   34 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            5899999999999999999999999999998865

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=96.76  E-value=0.017  Score=56.56  Aligned_cols=32  Identities=41%  Similarity=0.631  Sum_probs=28.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      +|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999999999998754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0016  Score=66.89  Aligned_cols=60  Identities=22%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCC-ceEEEEcCEEEEeecCCCCCCC
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGG-EKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~-~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +...++..++.+.+++.++.+..++++.+ +++.....+ .......+.||+|.|...+...
T Consensus       209 l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L  270 (542)
T COG2303         209 LKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL  270 (542)
T ss_pred             chhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence            33456777899999999999998887665 444432222 2445788899999998776554

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.72  E-value=0.024  Score=57.45  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999988753

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.67  E-value=0.00087  Score=65.71  Aligned_cols=42  Identities=43%  Similarity=0.569  Sum_probs=38.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ..+||+|||||..|..||.-++-+|+++.|||+++.-.|+-.
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            359999999999999999999999999999999887777643

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.67  E-value=0.011  Score=60.70  Aligned_cols=100  Identities=19%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCcC-------CCCC-----HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIV-------PSMD-----GEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~-------~~~~-----~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .+++|||.|..|..+...+.+..   ..+|++...++.-       +.+.     .++.-.-.+..+++||+++++.+++
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~   83 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI   83 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence            57999999999999998888743   4688886555431       1222     2333334567889999999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL  321 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l  321 (477)
                      .|+..+..+...       .+.++.+|.+|+|||..|+....
T Consensus        84 ~idr~~k~V~t~-------~g~~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          84 QIDRANKVVTTD-------AGRTVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             EeccCcceEEcc-------CCcEeecceeEEecCccccccCC
Confidence            997665444332       67899999999999999988753

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.65  E-value=0.038  Score=57.76  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=27.5

Q ss_pred             eEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       217 v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      |+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6899999999999999999999999998766

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.65  E-value=0.032  Score=58.20  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +.+.+++.||++++++.++++..+++.+. +......++....+.++.||+|+|-..
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            44455667899999999999876665543 332222334445789999999999643

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.62  E-value=0.0047  Score=61.11  Aligned_cols=93  Identities=19%  Similarity=0.348  Sum_probs=61.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc---CCCCC-------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---VPSMD-------------------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~---~~~~~-------------------------------------  254 (477)
                      -.|+|||||+.|+|.|...++.|.++.+++.+..-   ++.-+                                     
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            36899999999999999999999998887755432   11111                                     


Q ss_pred             ---------------HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCC-eEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          255 ---------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGD-GVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       255 ---------------~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~-~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                                     ......+++.++. .++.++ ...|.++..+++ .+. +.+.     +|..+.|+.||++||
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~-----~G~~~~a~aVVlTTG  155 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTA-----DGPEFHAKAVVLTTG  155 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeC-----CCCeeecCEEEEeec
Confidence                           1123334444443 366665 445556555444 344 4443     678999999999999

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.61  E-value=0.042  Score=57.79  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=30.7

Q ss_pred             cEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          270 MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      |+++.++.++++..+++.+. +......++....+.++.||+|+|-
T Consensus       166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG  211 (626)
T PRK07803        166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG  211 (626)
T ss_pred             eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence            88888888888876555443 2222223344457999999999994

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.61  E-value=0.0036  Score=44.58  Aligned_cols=32  Identities=38%  Similarity=0.461  Sum_probs=29.0

Q ss_pred             EEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       219 IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      |||+|.+|+.+|..|++.|.+|+++++++.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            79999999999999999999999999998763

...

>TIGR00551 nadB L-aspartate oxidase

Probab=96.59  E-value=0.041  Score=56.18  Aligned_cols=55  Identities=9%  Similarity=0.128  Sum_probs=37.5

Q ss_pred             HHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          259 KQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       259 ~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ..+.+.+++ .||++++++.++++..+++.+. +.+.+.  +....+.++.||+|+|-.
T Consensus       132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~  188 (488)
T TIGR00551       132 TTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR--ETVETCHADAVVLATGGA  188 (488)
T ss_pred             HHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC--CcEEEEEcCEEEECCCcc
Confidence            334445555 5899999999999876665554 444321  233578999999999853

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.57  E-value=0.011  Score=56.23  Aligned_cols=97  Identities=13%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC----CCeE-EEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL----GLKT-TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS  116 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~----g~~V-~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~  116 (477)
                      .+..|.|||+|+-|...|+.|++.    |.+| .|++....                                       
T Consensus       346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n---------------------------------------  386 (659)
T KOG1346|consen  346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN---------------------------------------  386 (659)
T ss_pred             hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC---------------------------------------
Confidence            356899999999999999999875    4444 34433110                                       


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEE--ecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKF--ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                          ..++++      +.+.++..+..++.||+++.+. +..  .+...+.+.++||  .+++.|.||+|+|..|.
T Consensus       387 ----m~kiLP------eyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG--~~l~tD~vVvavG~ePN  450 (659)
T KOG1346|consen  387 ----MEKILP------EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDG--SELRTDLVVVAVGEEPN  450 (659)
T ss_pred             ----hhhhhH------HHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCC--CeeeeeeEEEEecCCCc
Confidence                000000      1122333455667788887663 322  3456778889999  89999999999999985

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.57  E-value=0.012  Score=56.66  Aligned_cols=104  Identities=18%  Similarity=0.321  Sum_probs=61.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCcC--CC--CC------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIV--PS--MD------------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~~--~~--~~------------------------------------  254 (477)
                      .++.||.|+..+.+|..+...+ .++.++++.+.+.  |.  ++                                    
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            4789999999999999998876 7888999877651  10  00                                    


Q ss_pred             -----------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCe----EEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          255 -----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       255 -----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~----~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                                 .+..+.++-..++..-.+..+++|++|+..++.    ..|++.+ .++++..+.|+.|++++|..|..+
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCCCCC
Confidence                       122233322333334337779999999876543    5566654 556788999999999999998875


Q ss_pred             C
Q 011787          320 G  320 (477)
Q Consensus       320 ~  320 (477)
                      .
T Consensus       163 ~  163 (341)
T PF13434_consen  163 E  163 (341)
T ss_dssp             G
T ss_pred             c
Confidence            4

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.55  E-value=0.05  Score=57.00  Aligned_cols=51  Identities=10%  Similarity=0.133  Sum_probs=34.4

Q ss_pred             HHHHhcC-cEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          263 RSLEKQK-MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       263 ~~l~~~g-v~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +.+++.+ |+++.++.+.++..+++++. +...+..++....+.++.||+|+|
T Consensus       140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  192 (608)
T PRK06854        140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATG  192 (608)
T ss_pred             HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence            3444554 99999999999876555543 322222233345799999999999

>TIGR01810 betA choline dehydrogenase

Probab=96.53  E-value=0.0023  Score=66.03  Aligned_cols=32  Identities=31%  Similarity=0.456  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCC-CeEEEEecCC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG   76 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~   76 (477)
                      |+||||||.||+.+|.+|++.+ .+|+|+|+..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            7999999999999999999997 7999999964

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.47  E-value=0.049  Score=56.39  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEEcCCe-EE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +...+.+.+++.||++++++.++++..++++ +. +......++....+.++.||+|||-
T Consensus       136 i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  195 (543)
T PRK06263        136 MMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG  195 (543)
T ss_pred             HHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence            4444555566679999999999998766554 43 3333223344457999999999984

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.46  E-value=0.058  Score=56.27  Aligned_cols=48  Identities=17%  Similarity=0.237  Sum_probs=32.0

Q ss_pred             cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      .||+++.++.+.++..+++.+. +...+..++....+.++.||+|+|-.
T Consensus       151 ~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (577)
T PRK06069        151 DNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA  199 (577)
T ss_pred             CCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence            5788888888888866555543 33222223333478999999999843

>PLN02785 Protein HOTHEAD

Probab=96.45  E-value=0.0033  Score=65.21  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..||+||||||.||+.+|.+|.+ +.+|+|+|+..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            46999999999999999999999 58999999953

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=96.43  E-value=0.047  Score=50.88  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcCcEEEeCceEEEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          258 RKQFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.++..+++.|+.|+.+..++.+...   +..+.+.++     ++..+.++.+|+++|..-|.
T Consensus       156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt-----~gs~Y~akkiI~t~GaWi~k  214 (399)
T KOG2820|consen  156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT-----DGSIYHAKKIIFTVGAWINK  214 (399)
T ss_pred             HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEec-----cCCeeecceEEEEecHHHHh
Confidence            344567788899999999999887632   233444443     66789999999999965443

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.41  E-value=0.011  Score=63.62  Aligned_cols=34  Identities=38%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~  249 (477)
                      +|+|||||+.|+-+|..|++.  |.+|+++++.+..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            689999999999999999998  8899999998753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.36  E-value=0.067  Score=56.53  Aligned_cols=51  Identities=14%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +.+.+.||+++.++.++++..+++++. +.+.+..++....+.++.||+|||
T Consensus       166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG  217 (657)
T PRK08626        166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG  217 (657)
T ss_pred             HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            345567899999999999887666543 444433345556788999999998

>PRK08275 putative oxidoreductase; Provisional

Probab=96.35  E-value=0.074  Score=55.23  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+.+.+.+.+++.|++++.++.++++..+ ++++. +...+..++....+.++.||+|+|-..
T Consensus       138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            34556666677789999999999999765 44443 333222334445789999999999654

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.34  E-value=0.067  Score=53.65  Aligned_cols=58  Identities=9%  Similarity=0.161  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          257 IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       257 ~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +.+.+.+.+++ .||++++++.++++..+++++. +....  +++...+.++.||+|+|--.
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK--DNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE--CCcEEEEEcCeEEEccCccc
Confidence            33444555544 4999999999999876666543 33221  22334789999999999643

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.30  E-value=0.081  Score=55.52  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEE-cCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDL-SGDGVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      .+.+..++.||+++.++.++++.. +++++. +...+..++....+.++.||+|||
T Consensus       171 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  226 (617)
T PTZ00139        171 TLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG  226 (617)
T ss_pred             HHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence            334445556888888888888765 445444 433333345556889999999997

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.26  E-value=0.0039  Score=57.13  Aligned_cols=39  Identities=33%  Similarity=0.513  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG   79 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~G   79 (477)
                      ...||+||||||..|++.|.+|.-+  +.+|.|+|++..++
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            3579999999999999999998765  89999999987765

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.052  Score=54.87  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+++|+|+|..|+++|..|++.|++|+++|+.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~   37 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK   37 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999999999999999999999999983

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.22  E-value=0.086  Score=54.53  Aligned_cols=33  Identities=39%  Similarity=0.495  Sum_probs=27.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~   49 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA   49 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence            468899999999888888888888888887755

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.18  E-value=0.12  Score=53.82  Aligned_cols=46  Identities=20%  Similarity=0.148  Sum_probs=31.6

Q ss_pred             cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      .+|+++.++.++++..+++++. +...+..++....+.++.||+|+|
T Consensus       146 ~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  192 (580)
T TIGR01176       146 PQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATG  192 (580)
T ss_pred             CCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence            3688888888888776666554 332222344456799999999998

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.13  E-value=0.033  Score=53.48  Aligned_cols=35  Identities=34%  Similarity=0.554  Sum_probs=32.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+|+|||||..|+-.|..|.+.|.+|.+++.+..+
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            57999999999999999999999999999987654

>PTZ00367 squalene epoxidase; Provisional

Probab=96.09  E-value=0.049  Score=56.27  Aligned_cols=34  Identities=15%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3479999999999999999999999999999875

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.02  E-value=0.14  Score=53.36  Aligned_cols=45  Identities=24%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             CCeecCCCCCCCCCCeEEecccCC-CC--------CchhHHHHHHHHHHHHHcC
Q 011787          334 GRIPVNERFATNIPGVYAIGDVIP-GP--------MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       334 g~i~vd~~l~t~~~~vya~GD~~~-~~--------~~~~~A~~~g~~aa~~i~~  378 (477)
                      |+|.||.+.+|++||+||+|+|++ +.        .....|...|++|++++..
T Consensus       359 GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~  412 (582)
T PRK09231        359 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE  412 (582)
T ss_pred             CCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            778888888899999999999864 21        1234566678888888764

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.01  E-value=0.0089  Score=56.99  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHC----CCeEEEEecC--CCCCc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKR--GALGG   80 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~----g~~V~lie~~--~~~GG   80 (477)
                      ...+||+|+||||.|.+.|..|...    .++|.|+|-.  +.+++
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~   79 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD   79 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence            3479999999999999999999965    5799999986  44543

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=95.95  E-value=0.14  Score=53.83  Aligned_cols=52  Identities=10%  Similarity=0.178  Sum_probs=34.9

Q ss_pred             HHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +...+.||+++.++.++++..+ ++++. +...+..++....+.++.||+|||-
T Consensus       195 ~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  248 (635)
T PLN00128        195 GQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG  248 (635)
T ss_pred             HHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence            3344568888888888887654 44443 4433333445568899999999984

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.94  E-value=0.009  Score=60.53  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG   76 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~   76 (477)
                      ....||.+|||||.||+..|.+|.+. ..+|+|+|+..
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg   91 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG   91 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence            45679999999999999999999998 68999999954

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.93  E-value=0.16  Score=53.06  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=33.8

Q ss_pred             HHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          265 LEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       265 l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      .++.|++++.++.++++..+ ++++. +...+..++....+.++.||+|||-
T Consensus       153 ~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        153 NLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             hhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            34567888888888887764 44444 3332333445567899999999983

>PLN02815 L-aspartate oxidase

Probab=95.88  E-value=0.12  Score=53.74  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             cCcEEEeCceEEEEEEcC-Ce---E-EEEEeecCCCceEEEEcCEEEEeec
Q 011787          268 QKMKFMLKTKVVGVDLSG-DG---V-KLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~-~~---~-~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      .||+++.++.++++..++ ++   + -+...+..++....+.++.||+|||
T Consensus       169 ~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG  219 (594)
T PLN02815        169 PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG  219 (594)
T ss_pred             CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence            378888888888876542 32   2 2433333344446789999999998

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.026  Score=52.59  Aligned_cols=98  Identities=16%  Similarity=0.301  Sum_probs=74.4

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEE-eC-CCcC-----------C-CCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE-FA-ADIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~-~~-~~~~-----------~-~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .+-.|+|||||+.|...|-+.++.|.+.-++. |- .+.+           | .-.+.+...++++.++..|+++...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            36689999999999999988888876544331 11 1111           1 234788899999999999999988888


Q ss_pred             EEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          279 VGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       279 ~~i~~~---~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +.+++.   ++-+.+++.     ++-.+++..+|++||.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~-----nGavLkaktvIlstGAr  324 (520)
T COG3634         290 SKLEPAAVEGGLIEVELA-----NGAVLKARTVILATGAR  324 (520)
T ss_pred             hcceecCCCCccEEEEec-----CCceeccceEEEecCcc
Confidence            888764   345667776     77899999999999955

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.82  E-value=0.13  Score=52.76  Aligned_cols=46  Identities=35%  Similarity=0.426  Sum_probs=34.6

Q ss_pred             CCeecCCCCCCCCCCeEEecccCC-CC----Cc----hhHHHHHHHHHHHHHcCC
Q 011787          334 GRIPVNERFATNIPGVYAIGDVIP-GP----ML----AHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       334 g~i~vd~~l~t~~~~vya~GD~~~-~~----~~----~~~A~~~g~~aa~~i~~~  379 (477)
                      |+|.||.+.+|++||+||+|+|++ +.    .+    ...+...|+.|++++...
T Consensus       333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  387 (510)
T PRK08071        333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK  387 (510)
T ss_pred             CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            778899999999999999999973 22    12    234566678888888643

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.80  E-value=0.22  Score=52.07  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=29.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~   36 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP   36 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence            469999999999999999999999999998543

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=0.15  Score=50.18  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~  249 (477)
                      .+|+|||+|++|+.+|..|.+.-   ..|++++..+++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            47999999999999999998762   238888887765

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.64  E-value=0.22  Score=51.99  Aligned_cols=60  Identities=18%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEEcC----CeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSG----DGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~----~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +...+.+.+++.||+++.++.++++..++    +++. +...+..++....+.++.||+|||-..
T Consensus       142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            34455666677899999999999987554    4443 333222333445789999999999543

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.62  E-value=0.014  Score=57.63  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=35.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      |..+|||||+|-|..-.-.|..|.+.|.+|+-+|+++.-||.|...
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl   46 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL   46 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence            3457999999999999999999999999999999999999987543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.58  E-value=0.044  Score=55.41  Aligned_cols=80  Identities=24%  Similarity=0.360  Sum_probs=56.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEe
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE  293 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~  293 (477)
                      .++++|+|+|.+|+.+|..|++.|.+|+++++...      ..+ +...+.+.+.|++++.+....+             
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~-------------   64 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE-------------   64 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh-------------
Confidence            68999999999999999999999999999977541      122 2223445666777654332210             


Q ss_pred             ecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          294 PAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       294 ~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                             ..-.+|.||.++|..|+...
T Consensus        65 -------~~~~~d~vv~~~g~~~~~~~   84 (450)
T PRK14106         65 -------FLEGVDLVVVSPGVPLDSPP   84 (450)
T ss_pred             -------HhhcCCEEEECCCCCCCCHH
Confidence                   11247999999998877653

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=95.56  E-value=0.18  Score=50.66  Aligned_cols=53  Identities=9%  Similarity=0.073  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcCcEEEeCceEEEEEEc--CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          258 RKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      .+.+.+.+++.|++++++++++++..+  ++.+. +...    ++...+.++.||+|+|-
T Consensus       126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~----~~~~~i~ak~VIlAtGG  181 (432)
T TIGR02485       126 TNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT----VGTHRITTQALVLAAGG  181 (432)
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc----CCcEEEEcCEEEEcCCC
Confidence            344455567779999999999998765  34333 3322    13368999999999993

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.54  E-value=0.069  Score=52.08  Aligned_cols=32  Identities=34%  Similarity=0.509  Sum_probs=28.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      -.|+|||||..|+|.|...++.|.+.++++.+
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            46999999999999999999999988877644

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.44  E-value=0.022  Score=55.88  Aligned_cols=35  Identities=34%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ++|+|||||+.|+++|..|++.|.+|+++++.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999976655

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.20  E-value=0.18  Score=49.08  Aligned_cols=83  Identities=18%  Similarity=0.345  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCcCCC--CCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEE
Q 011787          227 LEMGSVWARLGSEVTVVEFAADIVPS--MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE  304 (477)
Q Consensus       227 ~e~a~~l~~~g~~Vtli~~~~~~~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~  304 (477)
                      -++...+.+.|.... .+++.++.|.  -..++.+.+...+++.||+++++++|++|  ++++..+.+..    ++..+.
T Consensus        57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~----~~~~~~  129 (376)
T TIGR03862        57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPD----GQSTIE  129 (376)
T ss_pred             HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECC----CceEEe
Confidence            355667777776433 4556677763  34578888999999999999999999999  33445555431    234699


Q ss_pred             cCEEEEeecCCC
Q 011787          305 ADVVLVSAGRTP  316 (477)
Q Consensus       305 ~D~vi~a~G~~p  316 (477)
                      +|.||+|+|-.+
T Consensus       130 a~~vIlAtGG~s  141 (376)
T TIGR03862       130 ADAVVLALGGAS  141 (376)
T ss_pred             cCEEEEcCCCcc
Confidence            999999999754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.17  E-value=0.13  Score=50.71  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .|+|||+|..|+-+|..|.+. .+|+++++.+.-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            699999999999999999887 789999887643

>PRK09077 L-aspartate oxidase; Provisional

Probab=95.16  E-value=0.38  Score=49.75  Aligned_cols=46  Identities=26%  Similarity=0.314  Sum_probs=35.0

Q ss_pred             CCeecCCCCCCCCCCeEEecccCC-CCC--------chhHHHHHHHHHHHHHcCC
Q 011787          334 GRIPVNERFATNIPGVYAIGDVIP-GPM--------LAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       334 g~i~vd~~l~t~~~~vya~GD~~~-~~~--------~~~~A~~~g~~aa~~i~~~  379 (477)
                      |+|.||.+.||++||+||+|+|+. +..        ....|...|++|++++...
T Consensus       354 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        354 GGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             CCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            778889999999999999999873 221        2345667788899888643

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.03  E-value=0.37  Score=50.30  Aligned_cols=49  Identities=16%  Similarity=0.244  Sum_probs=33.8

Q ss_pred             HHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcC-EEEEeecC
Q 011787          264 SLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEAD-VVLVSAGR  314 (477)
Q Consensus       264 ~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~  314 (477)
                      ..++.|+++++++.++++..+ ++++. +...  .++....+.++ .||+|+|-
T Consensus       222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~--~~~~~~~i~a~~aVilAtGG  273 (584)
T PRK12835        222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVE--REGRTLRIGARRGVILATGG  273 (584)
T ss_pred             HHHhCCceEEeCCEEEEEEECCCCcEEEEEEE--eCCcEEEEEeceeEEEecCc
Confidence            345668999999999999875 34444 4443  23444568887 59999873

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.00  E-value=0.027  Score=52.22  Aligned_cols=34  Identities=32%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ..|-|||||.||..||+++++.|.+|.|.|-++.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            5689999999999999999999999999997543

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.96  E-value=0.045  Score=54.34  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            67999999999999999999999999999998765

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.94  E-value=0.032  Score=47.32  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +|.|||||..|.++|..|+++|++|+|+.++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence            5899999999999999999999999999873

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.94  E-value=0.049  Score=54.37  Aligned_cols=36  Identities=17%  Similarity=0.428  Sum_probs=33.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            357999999999999999999999999999998764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.89  E-value=0.024  Score=44.14  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +..+|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3578999999999999999999999999999883

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.88  E-value=0.57  Score=48.69  Aligned_cols=55  Identities=13%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcC-EEEEeecCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTP  316 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~~p  316 (477)
                      .+.+.+++.|++++++++++++..+++++. +....  ++....+.++ .||+|+|--.
T Consensus       213 ~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~  269 (557)
T PRK12844        213 RMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVR--DGREVLIRARRGVLLASGGFG  269 (557)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEE--CCeEEEEEecceEEEecCCcc
Confidence            334556667889999999999877666554 44432  3344568884 6999987433

>PRK06184 hypothetical protein; Provisional

Probab=94.85  E-value=0.046  Score=56.09  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~   39 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF   39 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            469999999999999999999999999999987653

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.82  E-value=0.026  Score=56.43  Aligned_cols=48  Identities=25%  Similarity=0.313  Sum_probs=37.3

Q ss_pred             HHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          262 QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       262 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      .......|.+++++++|++|+.+++++.+++.     +++++.+|.||+|+..
T Consensus       216 ~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~-----~g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  216 ALAAEELGGEIRLNTPVTRIEREDGGVTVTTE-----DGETIEADAVISAVPP  263 (450)
T ss_dssp             HHHHHHHGGGEESSEEEEEEEEESSEEEEEET-----TSSEEEESEEEE-S-H
T ss_pred             HHHHhhcCceeecCCcceeccccccccccccc-----cceEEecceeeecCch
Confidence            33444456799999999999999999998876     5569999999999873

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.76  E-value=0.051  Score=48.24  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||||..|...+..|.+.|.+|+|++++
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999999999999999999873

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.72  E-value=0.053  Score=53.77  Aligned_cols=37  Identities=32%  Similarity=0.465  Sum_probs=33.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      +.+|+|||||+.|+-+|..|++.|.+|+++++.+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            4689999999999999999999999999999987653

>PRK07395 L-aspartate oxidase; Provisional

Probab=94.72  E-value=0.29  Score=50.74  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             HHHHHHh-cCcEEEeCceEEEEEEcC--CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          261 FQRSLEK-QKMKFMLKTKVVGVDLSG--DGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       261 ~~~~l~~-~gv~~~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +.+.+++ .||+++.++.++++..++  +.+. +....  ++....+.++.||+|||-
T Consensus       140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        140 LTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGG  195 (553)
T ss_pred             HHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence            3344433 378888888887776542  3333 33321  233345889999999984

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.69  E-value=0.041  Score=55.73  Aligned_cols=38  Identities=34%  Similarity=0.480  Sum_probs=35.1

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      ..++|+|||+|.+|+.+|..|...|.+|++++.++++.
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            35789999999999999999999999999999998874

>PRK06847 hypothetical protein; Provisional

Probab=94.68  E-value=0.064  Score=52.71  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            468999999999999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	477
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		0.0
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-139
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		1e-139
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		1e-139
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		1e-128
1jeh_A	478	Crystal Structure Of Yeast E3, Lipoamide Dehydrogen		1e-123
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		1e-123
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-108
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		1e-106
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		1e-106
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		1e-89
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		2e-87
1bhy_A	482	Low Temperature Middle Resolution Structure Of P64k		2e-67
1ojt_A	482	Structure Of Dihydrolipoamide Dehydrogenase Length		2e-67
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		3e-66
3ii4_A	466	Structure Of Mycobacterial Lipoamide Dehydrogenase		3e-58
2a8x_A	464	Crystal Structure Of Lipoamide Dehydrogenase From M		1e-57
1zk7_A	467	Crystal Structure Of Tn501 Mera Length = 467		4e-48
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		2e-47
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		4e-43
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		2e-42
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		3e-42
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		3e-42
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		4e-42
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		4e-42
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		4e-42
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		5e-42
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		7e-41
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		8e-41
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		8e-41
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		9e-41
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		1e-40
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		1e-40
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		2e-40
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		8e-40
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		1e-39
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		9e-39
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		9e-37
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		9e-37
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		5e-36
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		1e-35
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		1e-35
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		3e-35
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		4e-35
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		4e-35
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		4e-35
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		4e-35
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		5e-35
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		3e-33
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		4e-33
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		4e-33
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		5e-33
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		5e-33
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		5e-33
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		5e-32
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		6e-32
3ic9_A	492	The Structure Of Dihydrolipoamide Dehydrogenase Fro		2e-31
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		2e-30
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		2e-30
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		6e-30
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		6e-30
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		2e-29
1xdi_A	499	Crystal Structure Of Lpda (Rv3303c) From Mycobacter		6e-29
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		4e-27
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		5e-25
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		2e-17
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		4e-11
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		6e-11
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		2e-10
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		2e-10
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		2e-10
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		2e-10
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		2e-10
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		2e-10
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		3e-10
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		2e-09
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		2e-09
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		4e-09
3cty_A	319	Crystal Structure Of T. Acidophilum Thioredoxin Red		7e-09
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		1e-08
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-08
2q7v_A	325	Crystal Structure Of Deinococcus Radiodurans Thiore		5e-08
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		7e-08
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		2e-07
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		5e-07
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		5e-07
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		6e-07
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		3e-06
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		3e-06
1fl2_A	310	Catalytic Core Component Of The Alkylhydroperoxide		3e-06
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		4e-06
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		7e-06
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		8e-06
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		9e-06
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		9e-06
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		9e-06
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		2e-05
2a87_A	335	Crystal Structure Of M. Tuberculosis Thioredoxin Re		4e-05
1hyu_A	521	Crystal Structure Of Intact Ahpf Length = 521		2e-04
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		7e-04

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/470 (81%), Positives = 411/470 (87%), Gaps = 30/470 (6%)
Query: 38  ASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
           AS SDEND            AAIKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSS
Sbjct: 1   ASGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSS 60
Query: 98  HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
           HMYHEA HSFA+HGVK S+VE+DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF
Sbjct: 61  HMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 120
Query: 158 ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKL 217
           +SPSE+SVDTIEG NTVVKGK+IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKL
Sbjct: 121 VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKL 180
Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
           VVIGAGYIGLEMGSVW R+GSEVTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTK
Sbjct: 181 VVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTK 240
Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
           VVGVD SGDGVKLT+EP+AGGE+TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI 
Sbjct: 241 VVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRIL 300
Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPE 397
           VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PE
Sbjct: 301 VNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPE 360
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
           VASVGKTEEQVKE GVEYRVGKFPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAP
Sbjct: 361 VASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAP 420
Query: 458 NAGELIH------------------------------EAAMATHDKPIHI 477
           NAGELIH                              EAAMAT+DKPIHI
Sbjct: 421 NAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHI 470

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score =  491 bits (1264), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/415 (59%), Positives = 307/415 (73%), Gaps = 3/415 (0%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
           AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S 
Sbjct: 21  AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 80
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +GG  V+ 
Sbjct: 81  VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVID 140
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
            KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct: 141 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 200
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
           G++VT VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E 
Sbjct: 201 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 260
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
           A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct: 261 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 320
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
           V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 321 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 380
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct: 381 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 435

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/415 (59%), Positives = 308/415 (74%), Gaps = 3/415 (0%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-FASHGVKFSS 116
           AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A  + FAS G++ S 
Sbjct: 21  AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSE 80
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +GG  V+ 
Sbjct: 81  VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVID 140
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
            KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct: 141 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 200
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
           G++VT VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E 
Sbjct: 201 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 260
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
           A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct: 261 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 320
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
           V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 321 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 380
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct: 381 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 435

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/415 (59%), Positives = 307/415 (73%), Gaps = 3/415 (0%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
           AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S 
Sbjct: 42  AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 101
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK    ++V+    +GG  V+ 
Sbjct: 102 VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVID 161
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
            KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct: 162 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 221
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
           G++VT VEF   +    +D EI K FQR L+KQ  KF L TKV G     DG + +++E 
Sbjct: 222 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 281
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
           A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGD
Sbjct: 282 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 341
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
           V+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 342 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 401
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           Y+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EAA+A
Sbjct: 402 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALA 456

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/415 (57%), Positives = 303/415 (73%), Gaps = 4/415 (0%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS- 116
           A+IKAAQLG+KT C+EKRGALGGTCLNVGCIPSKALLH++H+YH+A  +FA +G+     
Sbjct: 17  ASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEG 76
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
           V +D   M  QK++AV  LT G+E LFKKNKVTY KG G F +   + V+ ++G   +++
Sbjct: 77  VTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLE 136
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
            K  IIATGS+   LP +  DEK ++SSTGALAL  VPK +VVIG G IGLE+GSVWARL
Sbjct: 137 TKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARL 196
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPA 295
           G+EVTVVEFA    P++D ++      +L K +KMKFM  TKVVG   +GD V L +E  
Sbjct: 197 GAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGK 256
Query: 296 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
            G  +T+   + +LVS GR PFT GLGLDKI V  ++ G + + + F T+IP VYAIGDV
Sbjct: 257 NGKRETVT-CEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
Query: 356 I-PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
           +  GPMLAHKAE++GVAC E LAGK GHV+Y  +P V+YT PEVASVGK+E+++K+ GV 
Sbjct: 316 VDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVA 375
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           Y+VGKFPF ANSRAKA+   +G VK+L +K TD+ILGVHI+   AGELI EA +A
Sbjct: 376 YKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLA 430

>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478

Iteration: 1
 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/422 (54%), Positives = 305/422 (72%), Gaps = 11/422 (2%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS-HGVKFS- 115
           AAIKAAQLG  T C+EKRG LGGTCLNVGCIPSKALL++SH++H+ MH+ A   G+  + 
Sbjct: 20  AAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQ-MHTEAQKRGIDVNG 78
Query: 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVV 175
            +++++      KD AV  LT GIE LFKKNKVTY KG G F   +++ V  ++G    V
Sbjct: 79  DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTV 138
Query: 176 KG------KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEM 229
           K       KNII+ATGS+V   PGI IDE++IVSSTGAL+L E+PK+L +IG G IGLEM
Sbjct: 139 KEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEM 198
Query: 230 GSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-- 287
           GSV++RLGS+VTVVEF   I  SMDGE+ K  Q+ L+KQ + F L TKV+    + D   
Sbjct: 199 GSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNV 258
Query: 288 VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP 347
           V++ +E     ++  LEA+V+LV+ GR P+ AGLG +KIG+E DK GR+ ++++F +  P
Sbjct: 259 VEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFP 318
Query: 348 GVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ 407
            +  +GDV  GPMLAHKAEE+G+A VE L   HGHV+Y+ +P V+Y+HPEVA VGKTEEQ
Sbjct: 319 HIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQ 378
Query: 408 VKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAA 467
           +KE G++Y++GKFPF ANSRAK   D EG VKIL + +T++ILG HI+ PNAGE+I EA 
Sbjct: 379 LKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAG 438
Query: 468 MA 469
           +A
Sbjct: 439 LA 440

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/412 (56%), Positives = 292/412 (70%), Gaps = 2/412 (0%)
Query: 59  AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118
           AIKAAQLG K   +EKR   GGTCLNVGCIPSKALLH+S  +H+A H   + GV+ ++ +
Sbjct: 41  AIKAAQLGXKVAVVEKRSTYGGTCLNVGCIPSKALLHASEXFHQAQHGLEALGVEVANPK 100
Query: 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGK 178
           ++L    A KD  V +   G+  LFKKNK+   +G GK +   +VSV   +G   V++ K
Sbjct: 101 LNLQKXXAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAK 160
Query: 179 NIIIATGSDVKSLPGITI--DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           N++IATGSDV  +PG+ +  DEK IVSSTGALAL +VP   +V+G G IGLE+GSVWARL
Sbjct: 161 NVVIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPASXIVVGGGVIGLELGSVWARL 220
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           G++VTVVEF   I+   DGE+ KQ QR L KQ + F L  KV G   SGDG K+T EP  
Sbjct: 221 GAKVTVVEFLDTILGGXDGEVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVK 280
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GGE T L+A+VVL++ GR P T GLGL K GV  D  GR+ ++  F T+I GVYAIGDV+
Sbjct: 281 GGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVV 340
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
            GP LAHKAE++GVA  E +AG+ GHV+YD +PGVVYT PEVASVGKTEE++K  GV Y+
Sbjct: 341 RGPXLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYK 400
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAM 468
           +GKFPF AN RA+A    +G VKILA+KETD++LG HI+   AGE IHE A+
Sbjct: 401 IGKFPFTANGRARAXLQTDGFVKILADKETDRVLGGHIIGFGAGEXIHEIAV 452

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/412 (49%), Positives = 279/412 (67%), Gaps = 10/412 (2%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AAI+AAQLG+K   +EK  ALGGTCL VGCIPSKALL ++   +EA       G K   V
Sbjct: 16  AAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLL--GAKVKGV 73
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           E+DLPA+MA KDK V   T+G+E LFKKN +   +G  +F+S  +V V+  E G  + + 
Sbjct: 74  ELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVE--ETGEEL-EA 130
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
           + I+IATGS     P   +D +R+V+ST AL+  EVPK+L+V+G G IGLE+G VW RLG
Sbjct: 131 RYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLG 190
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
           +EV V+E+   I+P+MD E+ +  +R  +KQ +      +V  V     G ++ LE   G
Sbjct: 191 AEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELE---G 247
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
           GE  +LEAD VLV+ GR P+T GL L+  G+ TD+ GRIPV+E   T +P +YAIGDV+ 
Sbjct: 248 GE--VLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVR 305
Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV 417
           GPMLAHKA E+G+A VE +    GHVDY  +P VVYTHPE+A+VG TEE++K  G+ Y+V
Sbjct: 306 GPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKV 365
Query: 418 GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           GKFP+ A+ RA+A+ + EG +K+LA  +TD+ILGVH +    G+++ EAA+A
Sbjct: 366 GKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALA 417

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/417 (48%), Positives = 275/417 (65%), Gaps = 8/417 (1%)
Query: 58  AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111
           AAI+AAQLGLKT CIEK      + ALGGTCLNVGCIPSKALL SS+ YHEA  +F  HG
Sbjct: 18  AAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHEAKEAFKVHG 77
Query: 112 VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG 171
           ++   V +D+PAM+A+K   V NLT GI  LFK N VT  +G+GK ++  +V V  ++G 
Sbjct: 78  IEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGK 137
Query: 172 NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
             V++ +N+IIA+GS    +P   + +  IV STGAL    VPKKL VIGAG IGLE+GS
Sbjct: 138 TQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGS 197
Query: 232 VWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291
           VWARLG+EVTV+E     +P+ D +I K+  + L KQ +   L  +V   ++    V +T
Sbjct: 198 VWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVT 257
Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351
              A G +K     D ++V+ GR P T  L     GV  D+ G I V++   T++PGV+A
Sbjct: 258 FTDANGEQKETF--DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTSVPGVFA 315
Query: 352 IGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL 411
           IGDV+ G MLAHKA E+GV   E +AG    ++YD +P V+YTHPE+A VGKTE+ +K  
Sbjct: 316 IGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTHPEIAWVGKTEQTLKAE 375
Query: 412 GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAM 468
           GVE  VG FPF A+ RA A +D  G+VK++A+ +TD++LGVH++ P+A EL+ + A+
Sbjct: 376 GVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLGVHVIGPSAAELVQQGAI 432

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/418 (47%), Positives = 275/418 (65%), Gaps = 8/418 (1%)
Query: 58  AAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111
           AAIK+AQLGLKT  IEK      + ALGGTCLNVGCIPSKALL SS+ +HEA  SF  HG
Sbjct: 18  AAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHG 77
Query: 112 VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG 171
           +    V +D+P M+A+KD+ V NLT G+  L K N VT  +G+GK ++  +V V   +G 
Sbjct: 78  ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGS 137
Query: 172 NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
           + V+  +N+I+A+GS    +P   +D+  IV STGAL    VP KL VIGAG IGLE+GS
Sbjct: 138 SQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGS 197
Query: 232 VWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291
           VWARLG+EVTV+E     +P++D ++ K+ Q+ L KQ +K +L  +V G ++    V + 
Sbjct: 198 VWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVK 257
Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351
              A G +      D ++V+ GR P T  L     GV  D+ G I V++  AT++PGVYA
Sbjct: 258 FVDAEGEKSQAF--DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYA 315
Query: 352 IGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL 411
           IGDV+ G MLAHKA E+GV   E +AG    ++YD +P V+YTHPE+A VGKTE+ +K  
Sbjct: 316 IGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAE 375
Query: 412 GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           GV   VG FPF A+ RA A +D  G VK++A+ +TD++LGVH++ P+A EL+ + A+A
Sbjct: 376 GVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIA 433

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/412 (44%), Positives = 254/412 (61%), Gaps = 6/412 (1%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y +A HS    G+K  +V
Sbjct: 18  AAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAKHS-EEMGIKAENV 75
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
            +D   +   K   V  LT G+EGL K NKV  VKG   F+  + V V   +   T    
Sbjct: 76  TIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTF- 134
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
           KN IIATGS    LP       RI+ STGAL L EVPK LVVIG GYIG+E+G+ +A  G
Sbjct: 135 KNAIIATGSRPIELPNFKFS-NRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFG 193
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
           ++VT++E A +I+   + ++    ++ L+K+ ++ +      G +   DGV +T E  A 
Sbjct: 194 TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE--AN 251
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
           GE   ++AD VLV+ GR P T  LGL++IG++    G I V+++  T++P ++AIGD++P
Sbjct: 252 GETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVP 311
Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV 417
           GP LAHKA  +G    E +AG    VDY  +P VV++ PE ASVG  E+Q K+ G++   
Sbjct: 312 GPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIA 371
Query: 418 GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            KFPF AN RA A++D +G +K++  KE   I+G  I+ PNA ++I E  +A
Sbjct: 372 AKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLA 423

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score =  320 bits (819), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/413 (46%), Positives = 261/413 (63%), Gaps = 11/413 (2%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AAI+AAQLGLK   +E  G +GG CLNVGCIP+KALLH++   H  +      G+K +  
Sbjct: 21  AAIRAAQLGLKVLAVEA-GEVGGVCLNVGCIPTKALLHAAETLHH-LKVAEGFGLK-AKP 77
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           E+DL  +   +D+ V  LT G+  L K N V  ++G+ + + P EV V     G      
Sbjct: 78  ELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEV-----GGERYGA 132
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE-VPKKLVVIGAGYIGLEMGSVWARL 236
           K++I+ATGS+   L G    E  +  ST AL + E +PK+L+VIG G +GLE+G V+ RL
Sbjct: 133 KSLILATGSEPLELKGFPFGED-VWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRL 191
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           G+EVT++E+  +I+P  D E     +R+LEK+ ++   KTK VG +   DG+ + LEPA 
Sbjct: 192 GAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAE 251
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GGE   +  D VLV+ GR P T GLGL+K GV+ D+ G I VN R  T++PGVYAIGD  
Sbjct: 252 GGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAA 311
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
             P+LAHKA  +G+   E  AGK    DY +VP VVYT PE A VG TEE+ K  G + +
Sbjct: 312 RPPLLAHKAMREGLIAAENAAGKDSAFDY-QVPSVVYTSPEWAGVGLTEEEAKRAGYKVK 370
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           VGKFP  A+ RA  +  AEG+VK++ ++ETD +LGV I+ P AGELI EAA+A
Sbjct: 371 VGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALA 423

>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482

Iteration: 1
 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/418 (40%), Positives = 231/418 (55%), Gaps = 13/418 (3%)
Query: 39  SASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           SA  E D            AA  AA  GLK   +E+   LGG CLNVGCIPSKALLH++ 
Sbjct: 2   SADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAA 61
Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
           +  E  H  A++G+K+   E+D+  + A KD  VS LT G+ G+ K  KV  ++G G+F+
Sbjct: 62  VIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL 120
Query: 159 SPSEVSV-----DTIE-----GGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
            P  + V     D  E     G   +V  KN IIA GS V  LP I  ++ RI+ S+GAL
Sbjct: 121 DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIP-EDPRIIDSSGAL 179
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
           AL EVP KL++IG G IGLEMG+V++ LGS + VVE    ++   D ++ K +Q+  E +
Sbjct: 180 ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYR 239
Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV 328
               M+ TK V V+   DGV +T E  A   K     D VLV+AGR P    +  +K GV
Sbjct: 240 FDNIMVNTKTVAVEPKEDGVYVTFE-GANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV 298
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKV 388
                G I V+++  TN+P +YAIGD++  PMLAHKA  +G    E  AG   + D   +
Sbjct: 299 AVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVI 358
Query: 389 PGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKET 446
           PGV YT PEVA VG+TE   K    +     FP+ A+ RA A    +   K++ + ET
Sbjct: 359 PGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAET 416

>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482

Iteration: 1
 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/418 (40%), Positives = 231/418 (55%), Gaps = 13/418 (3%)
Query: 39  SASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           SA  E D            AA  AA  GLK   +E+   LGG CLNVGCIPSKALLH++ 
Sbjct: 2   SADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAA 61
Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
           +  E  H  A++G+K+   E+D+  + A KD  VS LT G+ G+ K  KV  ++G G+F+
Sbjct: 62  VIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL 120
Query: 159 SPSEVSV-----DTIE-----GGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
            P  + V     D  E     G   +V  KN IIA GS V  LP I  ++ RI+ S+GAL
Sbjct: 121 DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIP-EDPRIIDSSGAL 179
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
           AL EVP KL++IG G IGLEMG+V++ LGS + VVE    ++   D ++ K +Q+  E +
Sbjct: 180 ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYR 239
Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV 328
               M+ TK V V+   DGV +T E  A   K     D VLV+AGR P    +  +K GV
Sbjct: 240 FDNIMVNTKTVAVEPKEDGVYVTFE-GANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV 298
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKV 388
                G I V+++  TN+P +YAIGD++  PMLAHKA  +G    E  AG   + D   +
Sbjct: 299 AVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVI 358
Query: 389 PGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKET 446
           PGV YT PEVA VG+TE   K    +     FP+ A+ RA A    +   K++ + ET
Sbjct: 359 PGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAET 416

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score =  249 bits (635), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 231/411 (56%), Gaps = 23/411 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA--MHSFASHGVKFS 115
           AAI+A QLG+ T  +E + ALGGTCLN+GCIPSKAL+H +  +H+A      +  G+  +
Sbjct: 20  AAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA 78
Query: 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVV 175
           S  +D+   +A KD  V  LT G+  L KK+ V  V G+ K +   +V VD        +
Sbjct: 79  SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD-----GQRI 133
Query: 176 KGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWAR 235
           + +++++ATGS    LP + +    ++SST ALA   +P+ LVV+G GYIGLE+G  + +
Sbjct: 134 QCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALPQHLVVVGGGYIGLELGIAYRK 192
Query: 236 LGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD----LSGDGVKLT 291
           LG++V+VVE    I+P+ D E+      SL+K  +   L   V G +    L+ DG    
Sbjct: 193 LGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDG---- 248
Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351
                 G +  LEAD VLV+ GR P T G  L+ + ++ +    I ++ER  T++  V+A
Sbjct: 249 -----KGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAA-IAIDERCQTSMHNVWA 302
Query: 352 IGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL 411
           IGDV   PMLAH+A   G    E +AGK    +   +  V +T PEV  VGKT EQ  + 
Sbjct: 303 IGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQ 362
Query: 412 GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
           G++  V +FPF AN RA +++   G V+++A ++   ILG   +     EL
Sbjct: 363 GLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSEL 413

>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466

Iteration: 1
 Score =  223 bits (567), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/414 (35%), Positives = 220/414 (53%), Gaps = 7/414 (1%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V
Sbjct: 20  AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEV 77
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
             D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V  
Sbjct: 78  TFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTF 137
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
            N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG IG+E G V    G
Sbjct: 138 DNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYG 196
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
            +VT+VEF    +P+ D ++ K+ ++  +K  +  +  TKV  +   G  V +T+     
Sbjct: 197 VDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGV 256
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
            ++  L+A+ VL + G  P   G GLDK GV       I V++   TN+  +YAIGDV  
Sbjct: 257 AQE--LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNG 314
Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEY 415
              LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G + 
Sbjct: 315 LLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDV 374
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL+ E  +A
Sbjct: 375 VVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLA 428

>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464

Iteration: 1
 Score =  220 bits (560), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/414 (35%), Positives = 219/414 (52%), Gaps = 7/414 (1%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V
Sbjct: 18  AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEV 75
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
             D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V  
Sbjct: 76  TFDYGIAYDRSRKVAEGRVAGVHFLXKKNKITEIHGYGTFADANTLLVDLNDGGTESVTF 135
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
            N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG IG E G V    G
Sbjct: 136 DNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAGAIGXEFGYVLKNYG 194
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
            +VT+VEF    +P+ D ++ K+ ++  +K  +  +  TKV  +   G  V +T+     
Sbjct: 195 VDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGV 254
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
            ++  L+A+ VL + G  P   G GLDK GV       I V++   TN+  +YAIGDV  
Sbjct: 255 AQE--LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTNVGHIYAIGDVNG 312
Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEY 415
              LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G + 
Sbjct: 313 LLQLAHVAEAQGVVAAETIAGAETLTLGDHRXLPRATFCQPNVASFGLTEQQARNEGYDV 372
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL+ E  +A
Sbjct: 373 VVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLA 426

>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467

Iteration: 1
 Score =  189 bits (479), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/417 (32%), Positives = 214/417 (51%), Gaps = 24/417 (5%)
Query: 66  GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMM 125
           G + T IE RG +GGTC+NVGC+PSK ++ ++H+ H    S    G+  +   +D   ++
Sbjct: 27  GAQVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSKLL 85
Query: 126 AQKDKAVSNLTRG-IEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIA 183
           AQ+   V  L     EG+   N  +T V G  +F     ++V   EGG  VV     ++A
Sbjct: 86  AQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVA 145
Query: 184 TGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           TG+   V  +PG+   E    +ST ALA + +P++L VIG+  + LE+   +ARLGS+VT
Sbjct: 146 TGASPAVPPIPGL--KESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVT 203
Query: 242 VVE-----FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           V+      F  D  P++   +   F R+   + ++    ++V  +D  G+ V  T     
Sbjct: 204 VLARNTLFFRED--PAIGEAVTAAF-RAEGIEVLEHTQASQVAHMD--GEFVLTTTH--- 255
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
            GE   L AD +LV+ GRTP T  L LD  GV  +  G I +++   T+ P +YA GD  
Sbjct: 256 -GE---LRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCT 311
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
             P   + A   G      + G    +D   +P VV+T P+VA+VG +E +    G+E  
Sbjct: 312 DQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETD 371
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473
                     RA A  D  G +K++ E+ + +++GV  +AP AGELI  AA+A  ++
Sbjct: 372 SRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNR 428

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 208/417 (49%), Gaps = 22/417 (5%)
Query: 59  AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118
           A KAA  G +   IE + ALGGTC+NVGC+P K + ++SH+  EA+      GV+ S   
Sbjct: 20  AEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLA-EAVRDAPGFGVQASGGT 77
Query: 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGK 178
           +D P ++A +D+ +  +    +G  ++  +T V G+ +F     V   TIE     +   
Sbjct: 78  LDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARF-----VDAHTIEVEGQRLSAD 132
Query: 179 NIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           +I+IATG    V  LPG  +     ++S G  AL + PK++ +IGAGYIG+E+  +    
Sbjct: 133 HIVIATGGRPIVPRLPGAELG----ITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSF 188
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           GSEVTVV     ++   D  +      ++  Q ++  L+  V  ++    G  L  +   
Sbjct: 189 GSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQ--- 245
Query: 297 GGEKTILEA-DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
             + T LE  D V+ + GR P T  LGL+  G+E    G +P +    TN+PGVYA+GD+
Sbjct: 246 --DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303
Query: 356 IPGPMLAHKAEEDGVACVE--FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKE-LG 412
                L   A   G    E  F       +DYD +P VV+ HP ++ VG +E + +E LG
Sbjct: 304 TGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG 363
Query: 413 VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
               V +  F     A      +  +K++      +++GVH++   A E++   A+A
Sbjct: 364 DVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVA 420

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/409 (30%), Positives = 209/409 (51%), Gaps = 19/409 (4%)
Query: 75  RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVS 133
           R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + 
Sbjct: 52  RWGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIG 110
Query: 134 NLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193
           +L  G     ++ KV Y   YGKFI P ++     +G   V   +  +IATG   + L G
Sbjct: 111 SLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYL-G 169
Query: 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
           I  D++  +SS    +L   P K +V+GA Y+ LE     A +G +VTV+   + ++   
Sbjct: 170 IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGF 228
Query: 254 DGEIRKQFQRSLEKQKMKFMLK---TKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVL 309
           D ++  +    +E+  +KF+ +   TK+  ++    G +K+T +     E    E + VL
Sbjct: 229 DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVL 288
Query: 310 VSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEE 367
           ++ GR   T  +GL+ +GV+  +K G+IPV +   TN+P +YAIGD++ G + L   A +
Sbjct: 289 LAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQ 348
Query: 368 DGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE----YRVGKFP 421
            G    + L  G     DYD VP  V+T  E    G +EE+ V++ G E    Y    +P
Sbjct: 349 AGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWP 408
Query: 422 FLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAAMA 469
                 ++  D+ +   K++   K+ ++++G H++ PNAGE+    A A
Sbjct: 409 LEWTVPSR--DNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAA 455

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 208/406 (51%), Gaps = 19/406 (4%)
Query: 78  LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVSNLT 136
           LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L 
Sbjct: 55  LGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLN 113
Query: 137 RGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI 196
            G     ++ KV Y   YGKFI P ++     +G   V   +  +IATG   + L GI  
Sbjct: 114 WGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYL-GIPG 172
Query: 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256
           D++  +SS    +L   P K +V+GA Y+ LE     A +G +VTV+   + ++   D +
Sbjct: 173 DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQD 231
Query: 257 IRKQFQRSLEKQKMKFMLK---TKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSA 312
           +  +    +E+  +KF+ +   TK+  ++    G +K+T +     E    E + VL++ 
Sbjct: 232 MANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV 291
Query: 313 GRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGV 370
           GR   T  +GL+ +GV+  +K G+IPV +   TN+P +YAIGD++ G + L   A + G 
Sbjct: 292 GRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGR 351
Query: 371 ACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE----YRVGKFPFLA 424
              + L  G     DYD VP  V+T  E    G +EE+ V++ G E    Y    +P   
Sbjct: 352 LLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEW 411
Query: 425 NSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAAMA 469
              ++  D+ +   K++   K+ ++++G H++ PNAGE+    A A
Sbjct: 412 TVPSR--DNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAA 455

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 216/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 18  SAWRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 75
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 76  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 132
Query: 178 KNIIIATGS-----DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 133 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 188
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 189 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 248
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 249 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 308
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 309 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 368
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 369 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 428
Query: 465 EAAMA 469
             A+A
Sbjct: 429 GFAVA 433

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 216/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 35  SAWRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 92
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 93  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 149
Query: 178 KNIIIATGS-----DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 150 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 205
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 206 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 265
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 266 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 326 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 385
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 445
Query: 465 EAAMA 469
             A+A
Sbjct: 446 GFAVA 450

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 216/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 34  SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 91
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 92  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 148
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 149 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 204
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 205 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 264
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 265 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 324
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 325 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 384
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 385 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 444
Query: 465 EAAMA 469
             A+A
Sbjct: 445 GFAVA 449

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 216/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 35  SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 92
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 93  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 149
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 150 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 205
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 206 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 265
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 266 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 326 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 385
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 445
Query: 465 EAAMA 469
             A+A
Sbjct: 446 GFAVA 450

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 216/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 36  SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 93
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 94  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 150
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 151 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 206
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 207 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 266
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 267 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 326
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 327 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 386
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 387 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 446
Query: 465 EAAMA 469
             A+A
Sbjct: 447 GFAVA 451

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score =  168 bits (426), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 216/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 18  SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 75
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 76  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 132
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 133 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 188
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 189 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 248
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 249 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 308
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 309 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 368
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 369 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 428
Query: 465 EAAMA 469
             A+A
Sbjct: 429 GFAVA 433

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score =  165 bits (417), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 216/431 (50%), Gaps = 27/431 (6%)
Query: 61  KAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AAQ G K   ++         R  LGGTC+NVGCIP K L+H + +  +A+    ++G 
Sbjct: 44  EAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGW 102
Query: 113 KFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG 171
           K   +V+ D   M+      + +L  G     ++ KV Y   YG+FI P  +     +G 
Sbjct: 103 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK 162
Query: 172 NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
             +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE   
Sbjct: 163 EKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAG 221
Query: 232 VWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK---TKVVGVDLSGDGV 288
             A +G +VTV+   + ++   D ++  +    +E+  +KF+ +    KV  ++    G 
Sbjct: 222 FLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGR 280
Query: 289 KLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNI 346
              +  +   E+ I  E + V+++ GR   T  +GL+ +GV+  +K G+IPV +   TN+
Sbjct: 281 LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 340
Query: 347 PGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKT 404
           P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +
Sbjct: 341 PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 400
Query: 405 EEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPN 458
           EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PN
Sbjct: 401 EEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPN 458
Query: 459 AGELIHEAAMA 469
           AGE+    A A
Sbjct: 459 AGEVTQGFAAA 469

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 216/431 (50%), Gaps = 27/431 (6%)
Query: 61  KAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AAQ G K   ++         R  LGGTC+NVGCIP K L+H + +  +A+    ++G 
Sbjct: 50  EAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGW 108
Query: 113 KFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG 171
           K   +V+ D   M+      + +L  G     ++ KV Y   YG+FI P  +     +G 
Sbjct: 109 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK 168
Query: 172 NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
             +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE   
Sbjct: 169 EKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAG 227
Query: 232 VWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK---TKVVGVDLSGDGV 288
             A +G +VTV+   + ++   D ++  +    +E+  +KF+ +    KV  ++    G 
Sbjct: 228 FLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGR 286
Query: 289 KLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNI 346
              +  +   E+ I  E + V+++ GR   T  +GL+ +GV+  +K G+IPV +   TN+
Sbjct: 287 LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 346
Query: 347 PGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKT 404
           P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +
Sbjct: 347 PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 406
Query: 405 EEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPN 458
           EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PN
Sbjct: 407 EEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPN 464
Query: 459 AGELIHEAAMA 469
           AGE+    A A
Sbjct: 465 AGEVTQGFAAA 475

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 216/431 (50%), Gaps = 27/431 (6%)
Query: 61  KAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AAQ G K   ++         R  LGGTC+NVGCIP K L+H + +  +A+    ++G 
Sbjct: 52  EAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGW 110
Query: 113 KFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG 171
           K   +V+ D   M+      + +L  G     ++ KV Y   YG+FI P  +     +G 
Sbjct: 111 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK 170
Query: 172 NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
             +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE   
Sbjct: 171 EKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAG 229
Query: 232 VWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK---TKVVGVDLSGDGV 288
             A +G +VTV+   + ++   D ++  +    +E+  +KF+ +    KV  ++    G 
Sbjct: 230 FLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGR 288
Query: 289 KLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNI 346
              +  +   E+ I  E + V+++ GR   T  +GL+ +GV+  +K G+IPV +   TN+
Sbjct: 289 LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 348
Query: 347 PGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKT 404
           P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +
Sbjct: 349 PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 408
Query: 405 EEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPN 458
           EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PN
Sbjct: 409 EEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPN 466
Query: 459 AGELIHEAAMA 469
           AGE+    A A
Sbjct: 467 AGEVTQGFAAA 477

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score =  164 bits (415), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 216/431 (50%), Gaps = 27/431 (6%)
Query: 61  KAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AAQ G K   ++         R  LGGTC+NVGCIP K L+H + +  +A+    ++G 
Sbjct: 50  EAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGW 108
Query: 113 KFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG 171
           K   +V+ D   M+      + +L  G     ++ KV Y   YG+FI P  +     +G 
Sbjct: 109 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK 168
Query: 172 NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
             +   +  +IATG   + L GI  D++  +SS    +L   P K +V+GA Y+ LE   
Sbjct: 169 EKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAG 227
Query: 232 VWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK---TKVVGVDLSGDGV 288
             A +G +VTV+   + ++   D ++  +    +E+  +KF+ +    KV  ++    G 
Sbjct: 228 FLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGR 286
Query: 289 KLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVE-TDKMGRIPVNERFATNI 346
              +  +   E+ I  E + V+++ GR   T  +GL+ +GV+  +K G+IPV +   TN+
Sbjct: 287 LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 346
Query: 347 PGVYAIGDVIPGPM-LAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKT 404
           P +YAIGD++   + L   A + G    + L AG     DY+ VP  V+T  E  + G +
Sbjct: 347 PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 406
Query: 405 EEQ-VKELGVE----YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPN 458
           EE+ V++ G E    Y    +P      ++  D+ +   KI+   K+ ++++G H++ PN
Sbjct: 407 EEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPN 464
Query: 459 AGELIHEAAMA 469
           AGE+    A A
Sbjct: 465 AGEVTQGFAAA 475

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 215/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGT +NVGC+P K + +++ ++ E MH  A +G      
Sbjct: 35  SARRAAELGARAAVVESH-KLGGTXVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 92
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 93  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 149
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 150 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 205
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 206 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 265
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 266 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 326 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 385
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 445
Query: 465 EAAMA 469
             A+A
Sbjct: 446 GFAVA 450

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 215/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVG +P K + +++ ++ E MH  A +G      
Sbjct: 35  SARRAAELGARAAVVESH-KLGGTCVNVGXVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 92
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 93  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 149
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 150 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 205
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 206 LSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 265
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 266 VTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 326 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 385
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQ 445
Query: 465 EAAMA 469
             A+A
Sbjct: 446 GFAVA 450

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 215/425 (50%), Gaps = 22/425 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           +A +AA+LG +   +E    LGGTC+NVG +P K + +++ ++ E MH  A +G      
Sbjct: 35  SARRAAELGARAAVVESH-KLGGTCVNVGXVPKKVMWNTA-VHSEFMHDHADYGFPSCEG 92
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
           + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE        
Sbjct: 93  KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTA 149
Query: 178 KNIIIATG-----SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
            +I+IATG          +PG ++     ++S G   L E+P + V++GAGYI +EM  +
Sbjct: 150 PHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGYIAVEMAGI 205
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
            + LGS+ +++     ++ S D  I       LE   ++ +  ++V  V  +  G+++++
Sbjct: 206 LSALGSKTSLMIRHDKVLRSFDSMISTNXTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 265
Query: 293 EPAAGGEKTIL----EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             A  G   ++    + D +L + GR P T  L L+K+G++TD  G I V+E   TN+ G
Sbjct: 266 VTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
Query: 349 VYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTE- 405
           +YA+GDV    +L   A   G  +A   F   +   +DY+ +P VV++HP + +VG TE 
Sbjct: 326 IYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTED 385
Query: 406 EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
           E + + G+E  +     F     A      + ++K++   + +K++G+H+      E++ 
Sbjct: 386 EAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVXANKEEKVVGIHMQGLGCDEMLQ 445
Query: 465 EAAMA 469
             A+A
Sbjct: 446 GFAVA 450

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 201/416 (48%), Gaps = 22/416 (5%)
Query: 61  KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEV 119
           +AA  G K   IE +  LGGTC+NVGC+P K + H++ +  EA+H +   +G   +  + 
Sbjct: 22  RAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQI-REAIHMYGPDYGFDTTINKF 79
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           +   ++A +   +  +    E +  KN V  +KG+ +F     V   T+E     +   +
Sbjct: 80  NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-----VDAKTLEVNGETITADH 134
Query: 180 IIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
           I+IATG       +PG+       + S G  AL  +P+++ V+GAGYIG+E+G V   LG
Sbjct: 135 ILIATGGRPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGYIGVELGGVINGLG 190
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
           ++  + E     +PS D  I +     +  +  +         V  + DG  LTLE   G
Sbjct: 191 AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDG-SLTLELEDG 249
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
             +T+   D ++ + GR P    + L+  GV+T++ G I V++   TNI G+YA+GD   
Sbjct: 250 RSETV---DCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG 306
Query: 358 GPMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKEL--GV 413
              L   A   G    E L       H+DY  +P VV++HP + +VG TE Q +E     
Sbjct: 307 AVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDD 366
Query: 414 EYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           + +V K  F A   A         +K++     +KI+G+H +     E++   A+A
Sbjct: 367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVA 422

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score =  157 bits (398), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 207/421 (49%), Gaps = 22/421 (5%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-----FASHGV 112
           +A +AA  G KT  +E + ALGGTC+NVGC+P K + ++S +     H+     + +  +
Sbjct: 26  SARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPL 84
Query: 113 KFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGN 172
               +  + P    ++D  V  L    +   +K KV  V G+ +F     V V   +   
Sbjct: 85  DKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTT 144
Query: 173 TVVKGKNIIIATGSDV---KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEM 229
            V    +I++ATG      +++PG  +       S G   L E PKK+VV+GAGYIG+E+
Sbjct: 145 EVYSANHILVATGGKAIFPENIPGFELG----TDSDGFFRLEEQPKKVVVVGAGYIGIEL 200
Query: 230 GSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK 289
             V+  LGSE  +V     ++   D  I+        K+ +     +K+V V+ + +  K
Sbjct: 201 AGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDK 260
Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
           L +       K+I + D ++ + GR     G+G + +G++ +   +I  +E   TN+P +
Sbjct: 261 LKIH--MNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVPNI 317
Query: 350 YAIGDVIPGPMLAHKAEEDGVACVEFLAG----KHGHVDYDKVPGVVYTHPEVASVGKTE 405
           Y++GDV+    L   A   G      L G    ++  +DY+ VP V+++HPE  S+G +E
Sbjct: 318 YSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISE 377
Query: 406 -EQVKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
            E +++ G E  +V    F A   A   + +    KI+     +K++G+HI+  ++ E++
Sbjct: 378 KEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEIL 437
Query: 464 H 464
Sbjct: 438 Q 438

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 206/409 (50%), Gaps = 37/409 (9%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y + +   A  G +F  SSV+ +   ++A K++AV +
Sbjct: 47  ALGGTCVNVGCVPKK-LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLD 105
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--D 187
           + +  EG+F   + + +  G+G   S + V V       + VK +    +I++ATGS   
Sbjct: 106 INKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQ 165
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVE 244
           + ++PGI    +  +SS  A  L E P++++ +G G+I +E   ++      G +VT+  
Sbjct: 166 MPAIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCY 221
Query: 245 FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTIL 303
               I+   D  IR++  + L    ++ M       V L+ DG K +T E      KT L
Sbjct: 222 RNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG----KT-L 276
Query: 304 EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
           + DVV+++ GR P T  L L  +GV+    G + V+E   TN+P +YAIGD+    ML  
Sbjct: 277 DVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTP 336
Query: 364 KAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEE----QVKELGVEYRVG 418
            A  +G A V+ + G K    D+ +V   V++ P + + G  EE    + +++ V Y   
Sbjct: 337 VAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAV-YMSS 395
Query: 419 KFPFLAN---SRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
             P + N   S+ K       + KI+       +LGVH++   A E+I 
Sbjct: 396 FTPLMHNISGSKYKKF-----VAKIVTNHSDGTVLGVHLLGDGAPEIIQ 439

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 206/409 (50%), Gaps = 37/409 (9%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y + +   A  G +F  SSV+ +   ++A K++AV +
Sbjct: 50  ALGGTCVNVGCVPKK-LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLD 108
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--D 187
           + +  EG+F   + + +  G+G   S + V V       + VK +    +I++ATGS   
Sbjct: 109 INKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQ 168
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVE 244
           + ++PGI    +  +SS  A  L E P++++ +G G+I +E   ++      G +VT+  
Sbjct: 169 MPAIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCY 224
Query: 245 FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTIL 303
               I+   D  IR++  + L    ++ M       V L+ DG K +T E      KT L
Sbjct: 225 RNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG----KT-L 279
Query: 304 EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
           + DVV+++ GR P T  L L  +GV+    G + V+E   TN+P +YAIGD+    ML  
Sbjct: 280 DVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTP 339
Query: 364 KAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEE----QVKELGVEYRVG 418
            A  +G A V+ + G K    D+ +V   V++ P + + G  EE    + +++ V Y   
Sbjct: 340 VAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAV-YMSS 398
Query: 419 KFPFLAN---SRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
             P + N   S+ K       + KI+       +LGVH++   A E+I 
Sbjct: 399 FTPLMHNISGSKYKKF-----VAKIVTNHSDGTVLGVHLLGDGAPEIIQ 442

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 197/416 (47%), Gaps = 22/416 (5%)
Query: 61  KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEV 119
           +AA  G K   IE +  LGGTC+NVGC+P K + H++ +  EA+H +   +G   +  + 
Sbjct: 22  RAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQI-REAIHMYGPDYGFDTTINKF 79
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
           +   ++A +   +  +    E +  KN V  +KG+ +F     V   T+E     +   +
Sbjct: 80  NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-----VDAKTLEVNGETITADH 134
Query: 180 IIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
           I+IATG       +PG+       + S G  AL  +P+++ V+GAGYI +E+  V   LG
Sbjct: 135 ILIATGGRPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGYIAVELAGVINGLG 190
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
           ++  +       + S D  I +     +  +  +         V  + DG  LTLE   G
Sbjct: 191 AKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDG-SLTLELEDG 249
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
             +T+   D ++ + GR P    + L+  GV+T++ G I V++   TNI G+YA+GD   
Sbjct: 250 RSETV---DCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG 306
Query: 358 GPMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKEL--GV 413
              L   A   G    E L       H+DY  +P VV++HP + +VG TE Q +E     
Sbjct: 307 AVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDD 366
Query: 414 EYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           + +V K  F A   A         +K++     +KI+G+H +     E++   A+A
Sbjct: 367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVA 422

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 197/410 (48%), Gaps = 29/410 (7%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K ++  ++ Y + +   A  G +    SV  +  A++A K+KAVS 
Sbjct: 47  ALGGTCVNVGCVPKKLMVTGAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSG 105
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVV----KGKNIIIATGSDVK 189
           +    EG+F   + +T+ +G+G       V V      N+ V      + I++ATGS  +
Sbjct: 106 INDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 165
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW----ARLGSEVTVVEF 245
            L GI  D+   ++S  A  L+E PK+ + +G GYI +E   ++    AR G +V +   
Sbjct: 166 HL-GIEGDD-LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKAR-GGQVDLAYR 222
Query: 246 AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILE 304
              I+   D E+RKQ    L    +          V  + DG + +  E  A  +     
Sbjct: 223 GDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADY---- 278
Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHK 364
            DVV+++ GR P +  L LDK GVE  K G I V+    TN+  +YAIGDV    ML   
Sbjct: 279 -DVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPV 337
Query: 365 AEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEE----QVKELGVEYRVGK 419
           A  +G A V+   A K    D+ KV   V++ P +   G  EE    +  ++ V Y    
Sbjct: 338 AINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAV-YESSF 396
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            P + N         + +V+I+      ++LGVH++  ++ E+I   A+ 
Sbjct: 397 TPLMHNISGSTY--KKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAIC 444

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 197/410 (48%), Gaps = 29/410 (7%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K ++  ++ Y + +   A  G +    SV  +  A++A K+KAVS 
Sbjct: 47  ALGGTCVNVGCVPKKLMVTGAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSG 105
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVV----KGKNIIIATGSDVK 189
           +    EG+F   + +T+ +G+G       V V      N+ V      + I++ATGS  +
Sbjct: 106 INDSYEGMFADTEGLTFHQGWGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 165
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW----ARLGSEVTVVEF 245
            L GI  D+   ++S  A  L+E PK+ + +G GYI +E   ++    AR G +V +   
Sbjct: 166 HL-GIEGDD-LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKAR-GGQVDLAYR 222
Query: 246 AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILE 304
              I+   D E+RKQ    L    +          V  + DG + +  E  A  +     
Sbjct: 223 GDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADY---- 278
Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHK 364
            DVV+++ GR P +  L LDK GVE  K G I V+    TN+  +YAIGDV    ML   
Sbjct: 279 -DVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPV 337
Query: 365 AEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEE----QVKELGVEYRVGK 419
           A  +G A V+   A K    D+ KV   V++ P +   G  EE    +  ++ V Y    
Sbjct: 338 AINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAV-YESSF 396
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            P + N         + +V+I+      ++LGVH++  ++ E+I   A+ 
Sbjct: 397 TPLMHNISGSTY--KKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAIC 444

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 201/433 (46%), Gaps = 27/433 (6%)
Query: 61  KAAQLGLKT--------TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AA+ G KT        T I     LGGTC+NVGCIP K L+H + +   A+      G 
Sbjct: 125 EAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKK-LMHQAGLLSHALEDAEHFGW 183
Query: 113 KF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG 170
               S +  +   M+      + +L  G +   + N+VTY+   G+ ISP EV +     
Sbjct: 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQ 243
Query: 171 GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
             + + G  II+ATG   K  P I    +  ++S    +L   P K +VIGA Y+ LE  
Sbjct: 244 KVSTITGNKIILATGERPK-YPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
Query: 231 SVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF--------MLKTKVVGVD 282
              A LG +VTV+   + ++   D ++ ++    +E   +KF        + + KVV  +
Sbjct: 303 GFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTE 361
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
            +  G+ L       G+K   E + V+ + GR P  + +  + +GV+ DK GR+   +  
Sbjct: 362 NNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE 421
Query: 343 ATNIPGVYAIGDVIPG-PMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
            T +  VYAIGD+  G P L   A + G        AG     DY  V   V+T  E  +
Sbjct: 422 QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGA 481
Query: 401 VGKTEEQ-VKELG---VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMA 456
            G +EE  +++ G   +E     F  L  + A   D+   +  +  + +  ++LG+H++ 
Sbjct: 482 CGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLG 541
Query: 457 PNAGELIHEAAMA 469
           PNAGE+    A+A
Sbjct: 542 PNAGEITQGYAVA 554

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 201/433 (46%), Gaps = 27/433 (6%)
Query: 61  KAAQLGLKT--------TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AA+ G KT        T I     LGGTC+NVGCIP K L+H + +   A+      G 
Sbjct: 125 EAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKK-LMHQAGLLSHALEDAEHFGW 183
Query: 113 KF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG 170
               S +  +   M+      + +L  G +   + N+VTY+   G+ ISP EV +     
Sbjct: 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQ 243
Query: 171 GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
             + + G  II+ATG   K  P I    +  ++S    +L   P K +VIGA Y+ LE  
Sbjct: 244 KVSTITGNKIILATGERPK-YPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
Query: 231 SVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF--------MLKTKVVGVD 282
              A LG +VTV+   + ++   D ++ ++    +E   +KF        + + KVV  +
Sbjct: 303 GFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTE 361
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
            +  G+ L       G+K   E + V+ + GR P  + +  + +GV+ DK GR+   +  
Sbjct: 362 NNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE 421
Query: 343 ATNIPGVYAIGDVIPG-PMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
            T +  VYAIGD+  G P L   A + G        AG     DY  V   V+T  E  +
Sbjct: 422 QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGA 481
Query: 401 VGKTEEQ-VKELG---VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMA 456
            G +EE  +++ G   +E     F  L  + A   D+   +  +  + +  ++LG+H++ 
Sbjct: 482 CGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLG 541
Query: 457 PNAGELIHEAAMA 469
           PNAGE+    A+A
Sbjct: 542 PNAGEITQGYAVA 554

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 205/408 (50%), Gaps = 36/408 (8%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y E +   A  G +F  +++  +   ++A KD+AV N
Sbjct: 47  ALGGTCVNVGCVPKK-LMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKKLIAVKDEAVLN 105
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--D 187
           + +  E +F+  + + +  G+G   S + V+V       + VK +    NI++A+GS   
Sbjct: 106 INKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPH 165
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVE 244
           + ++PGI    +  +SS  A  L E P++++ +G G+I +E   ++        +VT+  
Sbjct: 166 MPNIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCY 221
Query: 245 FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTIL 303
               I+   D  +R++  + L    ++ + K     V+L+ DG K +T E    G+K  +
Sbjct: 222 RGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE---SGKK--M 276
Query: 304 EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
           + D+V+++ GR+P T  L L   GV   K G + V+E   TN+  +YAIGDV    ML  
Sbjct: 277 DFDLVMMAIGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTP 335
Query: 364 KAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEE---QVKELGVEYRVGK 419
            A  +  A V+ + G +    D+ +V   V++ P + + G  EE   +  E+   Y    
Sbjct: 336 VAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSF 395
Query: 420 FPFLAN---SRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
            P + N   S+ K       + KI+       +LGVH++  NA E+I 
Sbjct: 396 TPLMHNISGSKYKTF-----VAKIITNHSDGTVLGVHLLGDNAPEIIQ 438

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 201/433 (46%), Gaps = 27/433 (6%)
Query: 61  KAAQLGLKT--------TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112
           +AA+ G KT        T I     LGGTC+NVGCIP K L+H + +   A+      G 
Sbjct: 125 EAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKK-LMHQAGLLSHALEDAEHFGW 183
Query: 113 KF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG 170
               S +  +   M+      + +L  G +   + N+VTY+   G+ ISP EV +     
Sbjct: 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQ 243
Query: 171 GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
             + + G  II+ATG   K  P I    +  ++S    +L   P K +VIGA Y+ LE  
Sbjct: 244 KVSTITGNKIILATGERPK-YPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
Query: 231 SVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF--------MLKTKVVGVD 282
              A LG +VTV+   + ++   D ++ ++    +E   +KF        + + KVV  +
Sbjct: 303 GFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTE 361
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
            +  G+ L       G+K   E + V+ + GR P  + +  + +GV+ DK GR+   +  
Sbjct: 362 NNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE 421
Query: 343 ATNIPGVYAIGDVIPG-PMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
            T +  VYAIGD+  G P L   A + G        AG     DY  V   V+T  E  +
Sbjct: 422 QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGA 481
Query: 401 VGKTEEQ-VKELG---VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMA 456
            G +EE  +++ G   +E     F  L  + A   D+   +  +  + +  ++LG+H++ 
Sbjct: 482 CGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLG 541
Query: 457 PNAGELIHEAAMA 469
           PNAGE+    A+A
Sbjct: 542 PNAGEITQGYAVA 554

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 197/410 (48%), Gaps = 29/410 (7%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K ++  ++ Y + +   A  G +    SV  +  A++A K+KAVS 
Sbjct: 46  ALGGTCVNVGCVPKKLMVTGAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSG 104
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVV----KGKNIIIATGSDVK 189
           +    EG+F   + +T+ +G+G       V V      N+ V      + I++ATGS  +
Sbjct: 105 INDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 164
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW----ARLGSEVTVVEF 245
            L GI  D+   ++S  A  L+E PK+ + +G GYI +E   ++    AR G +V +   
Sbjct: 165 HL-GIEGDD-LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKAR-GGQVDLAYR 221
Query: 246 AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILE 304
              I+   D E+RKQ    L    +          V  + DG + +  E  A  +     
Sbjct: 222 GDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADY---- 277
Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHK 364
            DVV+++ GR P +  L L+K GVE  K G I V+    TN+  +YAIGDV    ML   
Sbjct: 278 -DVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPV 336
Query: 365 AEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEE----QVKELGVEYRVGK 419
           A  +G A V+   A K    D+ KV   V++ P +   G  EE    +  ++ V Y    
Sbjct: 337 AINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAV-YESSF 395
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            P + N         + +V+I+      ++LGVH++  ++ E+I   A+ 
Sbjct: 396 TPLMHNISGSTY--KKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAIC 443

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 197/410 (48%), Gaps = 29/410 (7%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K ++  ++ Y + +   A  G +    SV  +  A++A K+KAVS 
Sbjct: 46  ALGGTCVNVGCVPKKLMVTGAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSG 104
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVV----KGKNIIIATGSDVK 189
           +    EG+F   + +T+ +G+G       V V      N+ V      + I++ATGS  +
Sbjct: 105 INDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQ 164
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW----ARLGSEVTVVEF 245
            L GI  D+   ++S  A  L+E PK+ + +G GYI +E   ++    AR G +V +   
Sbjct: 165 HL-GIEGDD-LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKAR-GGQVDLAYR 221
Query: 246 AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILE 304
              I+   D E+RKQ    L    +          V  + DG + +  E  A  +     
Sbjct: 222 GDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADY---- 277
Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHK 364
            DVV+++ GR P +  L L+K GVE  K G I V+    TN+  +YAIGDV    ML   
Sbjct: 278 -DVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPV 336
Query: 365 AEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEE----QVKELGVEYRVGK 419
           A  +G A V+   A K    D+ KV   V++ P +   G  EE    +  ++ V Y    
Sbjct: 337 AINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAV-YESSF 395
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            P + N         + +V+I+      ++LGVH++  ++ E+I   A+ 
Sbjct: 396 TPLMHNISGSTY--KKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAIC 443

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 204/408 (50%), Gaps = 36/408 (8%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y E +   A  G +F  +++  +   ++A KD+AV N
Sbjct: 47  ALGGTCVNVGCVPKK-LMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLN 105
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--D 187
           + +  + +F+  + + +  G+G   S + V+V       + VK +    +I++A+GS   
Sbjct: 106 INKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPH 165
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVE 244
           + ++PGI    +  +SS  A  L E P++++ +G G+I +E   ++        +VT+  
Sbjct: 166 MPNIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCY 221
Query: 245 FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTIL 303
               I+   D  +R++  + L    ++ + K     V+L+ DG K +T E    G+K  +
Sbjct: 222 RGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE---SGKK--M 276
Query: 304 EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
           + D+V+++ GR+P T  L L   GV   K G + V+E   TN+  +YAIGDV    ML  
Sbjct: 277 DFDLVMMAIGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTP 335
Query: 364 KAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEE---QVKELGVEYRVGK 419
            A  +  A V+ + G      D+ +V   V++ P + + G  EE   +  E+   Y    
Sbjct: 336 VAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSF 395
Query: 420 FPFL---ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
            P +   + S+ K       + KI+       +LGVH++  NA E+I 
Sbjct: 396 TPLMHKVSGSKYKTF-----VAKIITNHSDGTVLGVHLLGDNAPEIIQ 438

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score =  139 bits (350), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 204/408 (50%), Gaps = 36/408 (8%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y E +   A  G +F  +++  +   ++A KD+AV N
Sbjct: 46  ALGGTCVNVGCVPKK-LMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLN 104
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--D 187
           + +  + +F+  + + +  G+G   S + V+V       + VK +    +I++A+GS   
Sbjct: 105 INKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPH 164
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVE 244
           + ++PGI    +  +SS  A  L E P++++ +G G+I +E   ++        +VT+  
Sbjct: 165 MPNIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCY 220
Query: 245 FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTIL 303
               I+   D  +R++  + L    ++ + K     V+L+ DG K +T E    G+K  +
Sbjct: 221 RGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE---SGKK--M 275
Query: 304 EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
           + D+V+++ GR+P T  L L   GV   K G + V+E   TN+  +YAIGDV    ML  
Sbjct: 276 DFDLVMMAIGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTP 334
Query: 364 KAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEE---QVKELGVEYRVGK 419
            A  +  A V+ + G      D+ +V   V++ P + + G  EE   +  E+   Y    
Sbjct: 335 VAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSF 394
Query: 420 FPFL---ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
            P +   + S+ K       + KI+       +LGVH++  NA E+I 
Sbjct: 395 TPLMHKVSGSKYKTF-----VAKIITNHSDGTVLGVHLLGDNAPEIIQ 437

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 204/408 (50%), Gaps = 36/408 (8%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y E +   A  G +F  +++  +   ++A KD+AV N
Sbjct: 48  ALGGTCVNVGCVPKK-LMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLN 106
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--D 187
           + +  + +F+  + + +  G+G   S + V+V       + VK +    +I++A+GS   
Sbjct: 107 INKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPH 166
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVE 244
           + ++PGI    +  +SS  A  L E P++++ +G G+I +E   ++        +VT+  
Sbjct: 167 MPNIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCY 222
Query: 245 FAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTIL 303
               I+   D  +R++  + L    ++ + K     V+L+ DG K +T E    G+K  +
Sbjct: 223 RGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE---SGKK--M 277
Query: 304 EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
           + D+V+++ GR+P T  L L   GV   K G + V+E   TN+  +YAIGDV    ML  
Sbjct: 278 DFDLVMMAIGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTP 336
Query: 364 KAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEE---QVKELGVEYRVGK 419
            A  +  A V+ + G      D+ +V   V++ P + + G  EE   +  E+   Y    
Sbjct: 337 VAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSF 396
Query: 420 FPFL---ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
            P +   + S+ K       + KI+       +LGVH++  NA E+I 
Sbjct: 397 TPLMHKVSGSKYKTF-----VAKIITNHSDGTVLGVHLLGDNAPEIIQ 439

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 197/415 (47%), Gaps = 25/415 (6%)
Query: 69  TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQ 127
           T  +  +  +GGTC+NVGCIP K L+H + +  EA+H  A++G      ++ D   ++  
Sbjct: 40  TPTLGTKWGVGGTCVNVGCIPKK-LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQS 98
Query: 128 KDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD 187
               + ++        +  KV Y+ G G F+  S   +  ++ G   +  +  +IA G  
Sbjct: 99  VQNHIKSVNWVTRVDLRDKKVEYINGLGSFVD-SHTLLAKLKSGERTITAQTFVIAVGGR 157
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
            +  P I    +  ++S    +L+  P K +V+GAGYIGLE       LG E TV+   +
Sbjct: 158 PR-YPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRS 215
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT-LEPAAGGEKTILEAD 306
            ++   D ++ +    S+E++ + F+ KT  + V+   DG  L   +    GE++    D
Sbjct: 216 IVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD 275
Query: 307 VVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKA 365
            VL + GR      L L   GV   K  +IPV+ + ATN+  +YA+GD+I G P L   A
Sbjct: 276 TVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVA 334
Query: 366 EEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE--------Y 415
              G +       G    +DY  V   V+T  E A VG +EE  VK+ G +        Y
Sbjct: 335 VLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYY 394
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETD-KILGVHIMAPNAGELIHEAAMA 469
           +  +F F+     +        +K +AE+  D ++ G+H + P AGE+I   A A
Sbjct: 395 KPTEF-FIPQKSVRYC-----YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAA 443

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 197/415 (47%), Gaps = 25/415 (6%)
Query: 69  TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQ 127
           T  +  +  +GGTC+NVGCIP K L+H + +  EA+H  A++G      ++ D   ++  
Sbjct: 44  TPTLGTKWGVGGTCVNVGCIPKK-LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQS 102
Query: 128 KDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD 187
               + ++        +  KV Y+ G G F+  S   +  ++ G   +  +  +IA G  
Sbjct: 103 VQNHIKSVNWVTRVDLRDKKVEYINGLGSFVD-SHTLLAKLKSGERTITAQTFVIAVGGR 161
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
            +  P I    +  ++S    +L+  P K +V+GAGYIGLE       LG E TV+   +
Sbjct: 162 PR-YPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRS 219
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT-LEPAAGGEKTILEAD 306
            ++   D ++ +    S+E++ + F+ KT  + V+   DG  L   +    GE++    D
Sbjct: 220 IVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD 279
Query: 307 VVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKA 365
            VL + GR      L L   GV   K  +IPV+ + ATN+  +YA+GD+I G P L   A
Sbjct: 280 TVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVA 338
Query: 366 EEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE--------Y 415
              G +       G    +DY  V   V+T  E A VG +EE  VK+ G +        Y
Sbjct: 339 VLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYY 398
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETD-KILGVHIMAPNAGELIHEAAMA 469
           +  +F F+     +        +K +AE+  D ++ G+H + P AGE+I   A A
Sbjct: 399 KPTEF-FIPQKSVRYC-----YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAA 447

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 197/415 (47%), Gaps = 25/415 (6%)
Query: 69  TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQ 127
           T  +  +  +GGTC+NVGCIP K L+H + +  EA+H  A++G      ++ D   ++  
Sbjct: 44  TPTLGTKWGVGGTCVNVGCIPKK-LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQS 102
Query: 128 KDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD 187
               + ++        +  KV Y+ G G F+  S   +  ++ G   +  +  +IA G  
Sbjct: 103 VQNHIKSVNWVTRVDLRDKKVEYINGLGSFVD-SHTLLAKLKSGERTITAQTFVIAVGGR 161
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
            +  P I    +  ++S    +L+  P K +V+GAGYIGLE       LG E TV+   +
Sbjct: 162 PR-YPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRS 219
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT-LEPAAGGEKTILEAD 306
            ++   D ++ +    S+E++ + F+ KT  + V+   DG  L   +    GE++    D
Sbjct: 220 IVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD 279
Query: 307 VVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKA 365
            VL + GR      L L   GV   K  +IPV+ + ATN+  +YA+GD+I G P L   A
Sbjct: 280 TVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVA 338
Query: 366 EEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ-VKELGVE--------Y 415
              G +       G    +DY  V   V+T  E A VG +EE  VK+ G +        Y
Sbjct: 339 VLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYY 398
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETD-KILGVHIMAPNAGELIHEAAMA 469
           +  +F F+     +        +K +AE+  D ++ G+H + P AGE+I   A A
Sbjct: 399 KPTEF-FIPQKSVRYC-----YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAA 447

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 190/408 (46%), Gaps = 25/408 (6%)
Query: 62  AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121
           AA LG K   I +    GGTC+  GC+P K  +++S  + E     A  G        D 
Sbjct: 24  AAALG-KKVAIAEEFRYGGTCVIRGCVPKKLYVYASQ-FAEHFEDAAGFGWTVGESRFDW 81
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVT----YVKGYGKFISPSEVSVDTIEGGNTVVKG 177
             ++A K++ ++ L    EGL++K         +    +   P+ V +  +  G TV   
Sbjct: 82  AKLVAAKEQEIARL----EGLYRKGLANAGAEILDTRAELAGPNTVKL--LASGKTVT-A 134
Query: 178 KNIIIATG---SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA 234
           + I+IA G   S   +LPG     +  ++S  A  L  +P+ +++ G GYI +E  +++ 
Sbjct: 135 ERIVIAVGGHPSPHDALPG----HELCITSNEAFDLPALPESILIAGGGYIAVEFANIFH 190
Query: 235 RLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEP 294
            LG + T++    +I+   D + R+    + E++ ++ + +  +  V    DG ++    
Sbjct: 191 GLGVKTTLIYRGKEILSRFDQDXRRGLHAAXEEKGIRILCEDIIQSVSADADGRRVATTX 250
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
             G     + AD V ++ GR P T GLGL+  GV T+++G I V+    T+ PG+YA+GD
Sbjct: 251 KHGE----IVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGD 306
Query: 355 VIPGPMLAHKAEEDGVACVEF-LAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGV 413
           V     L   A  +    +E          D+D +   V++ PE+ +VG TEE+      
Sbjct: 307 VTDRVQLTPVAIHEAXCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQ 366
Query: 414 EYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGE 461
           E  V +  F       +    + I K++      K++G HI+  +AGE
Sbjct: 367 EIEVYRAEFRPXKATLSGRKEKTIXKLVVNAADRKVVGAHILGHDAGE 414

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 199/410 (48%), Gaps = 20/410 (4%)
Query: 58  AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
           AA  A  LG K   I +   +GGTC+  GC+P K   ++S    E   S    G K++  
Sbjct: 41  AARLAGALG-KRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIG-FGWKYADP 98
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKK----NKVTYVKGYGKFISPSEVSVDTIEGGNT 173
             +   ++A K+K +S L    EGL+++    + V   +    F+    + + ++ G   
Sbjct: 99  IFNWEKLVAAKNKEISRL----EGLYREGLQNSNVHIYESRAVFVDEHTLEL-SVTGER- 152
Query: 174 VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 233
            +  + I+IATG+ + S   I       ++S     L ++PK +V++G GYIG+E  +++
Sbjct: 153 -ISAEKILIATGAKIVSNSAIK-GSDLCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIF 210
Query: 234 ARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
             LG + T++     I+ + D ++R+    ++  + +  + +  V  V  + +   + L 
Sbjct: 211 HGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLT 270
Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
                 +TI  AD V+++ GR P T GLGL++ GV+ ++ G + V+E+  TN+  ++A+G
Sbjct: 271 NG----QTIC-ADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVG 325
Query: 354 DVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELG 412
           DV     L   A  D +  V+          DYD +   V++ PE+ +VG +EE      
Sbjct: 326 DVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRY 385
Query: 413 VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
               + +  F       +    +  +K++ + E+  ++G H++  NAGE+
Sbjct: 386 KRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEI 435

>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 200/430 (46%), Gaps = 28/430 (6%)
Query: 59  AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM-YHEAMHSFASHGVKFSSV 117
           A +AA+       + + GA G TC  VGC PSK L+ ++   YH +       G++   +
Sbjct: 23  AYRAAKKHTDKVVLIEGGAYGTTCARVGCXPSKLLIAAADASYHASQTDL--FGIQVDRI 80
Query: 118 EVDLPA----MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNT 173
            V+  A    +  ++D+ V  +   +E   +++K+   +G+ KF+    + VD     ++
Sbjct: 81  SVNGKAVXKRIQTERDRFVGFVVESVESFDEQDKI---RGFAKFLDEHTLQVDD----HS 133
Query: 174 VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW 233
            V  K I+IATGS       +     R++++     LN++PK + V G G IGLE+G   
Sbjct: 134 QVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQAL 193
Query: 234 ARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
           +RLG  V V   +  +    D E ++  +++   ++  F  K +V+      D V++   
Sbjct: 194 SRLGVIVKVFGRSGSVANLQDEEXKRYAEKTF-NEEFYFDAKARVISTIEKEDAVEVIYF 252
Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE-RFATNIPGVYAI 352
             + G+KT      VL + GR      LGL+   +E DK      +E    T++  ++  
Sbjct: 253 DKS-GQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVA 311
Query: 353 GDVIPGPMLAHKAEEDG-VACVEFLAGKHGHV--DYDKVP-GVVYTHPEVASVGKTEEQV 408
           GD      L H+A +DG VA     AG +  +     + P  VV+T P+VASVG +  Q+
Sbjct: 312 GDANNTLTLLHEAADDGKVAGTN--AGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQI 369
Query: 409 KEL-----GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
           ++L        Y VG+  F    R++     +G++ + A++ + + LG     P A  + 
Sbjct: 370 EDLYADQDAANYVVGQVSFEGQGRSRVXGKNKGLLNVYADRTSGEFLGAEXFGPAAEHIG 429
Query: 464 HEAAMATHDK 473
           H  A A   +
Sbjct: 430 HLLAWARQQQ 439

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 189/407 (46%), Gaps = 23/407 (5%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y + +      G +    S+  +   ++A K+K V++
Sbjct: 67  ALGGTCVNVGCVPKK-LMVTGAQYMDLIRESGGFGWEMDRESLCPNWKTLIAAKNKVVNS 125
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNT----VVKGKNIIIATGSDVK 189
           +    + +F   + +++  G+G       V V   E  ++     +  + I+IATGS   
Sbjct: 126 INESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPT 185
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV---WARLGSEVTVVEFA 246
            L G+  DE  I S+  A  L + PK+++ +G GYI +E   +   +   G  V +    
Sbjct: 186 RL-GVPGDEFCITSNE-AFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYVDLCYRG 243
Query: 247 ADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD 306
             I+   D E+RK   + L    ++         +  + DG    +    G E+   + D
Sbjct: 244 DLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSN-HVHFNDGTEE---DYD 299
Query: 307 VVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE 366
            V+++ GR P +  L LDK GV T K G + V+    T++  +YAIGDV    ML   A 
Sbjct: 300 QVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDVTNRVMLTPVAI 359
Query: 367 EDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPF 422
            +G A VE    GK    D+ KV   V++ P + + G TEE+     E    Y     P 
Sbjct: 360 NEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNYETVAVYASSFTPL 419
Query: 423 LANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           + N         E +++I+  +   ++LGVH++  +A E+I    + 
Sbjct: 420 MHNISGS--KHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGIC 464

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 189/407 (46%), Gaps = 23/407 (5%)
Query: 77  ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLPAMMAQKDKAVSN 134
           ALGGTC+NVGC+P K L+ +   Y + +      G +    S+  +   ++A K+K V++
Sbjct: 67  ALGGTCVNVGCVPKK-LMVTGAQYMDLIRESGGFGWEMDRESLCPNWKTLIAAKNKVVNS 125
Query: 135 LTRGIEGLFKKNK-VTYVKGYGKFISPSEVSVDTIEGGNT----VVKGKNIIIATGSDVK 189
           +    + +F   + +++  G+G       V V   E  ++     +  + I+IATGS   
Sbjct: 126 INESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPT 185
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV---WARLGSEVTVVEFA 246
            L G+  DE   ++S  A  L + PK+++ +G GYI +E   +   +   G  V +    
Sbjct: 186 RL-GVPGDE-FCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYVDLCYRG 243
Query: 247 ADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD 306
             I+   D E+RK   + L    ++         +  + DG    +    G E+   + D
Sbjct: 244 DLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSN-HVHFNDGTEE---DYD 299
Query: 307 VVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE 366
            V+++ GR P +  L LDK GV T K G + V+    T++  +YAIGDV    ML   A 
Sbjct: 300 QVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDVTNRVMLTPVAI 359
Query: 367 EDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPF 422
            +G A VE    GK    D+ KV   V++ P + + G TEE+     E    Y     P 
Sbjct: 360 NEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNYETVAVYASSFTPL 419
Query: 423 LANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           + N         E +++I+  +   ++LGVH++  +A E+I    + 
Sbjct: 420 MHNISGS--KHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGIC 464

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 197/429 (45%), Gaps = 21/429 (4%)
Query: 58  AAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS 109
            A +AAQLG K    +         +  LGGTC+NVGCIP K L+H + +    +     
Sbjct: 21  CAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKK-LMHQAALLGGMIRDAHH 79
Query: 110 HGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTI 168
           +G + +  V+ +   M       V +L  G     +  KV Y      F+    V     
Sbjct: 80  YGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDK 139
Query: 169 EGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 228
            G  T++  ++I+IATG   +    +    +  ++S     L E P K +V+GA Y+ LE
Sbjct: 140 GGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALE 199
Query: 229 MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV-DLSGDG 287
                  +G + TV+  +  +    D ++       +E    +F+       +  L  + 
Sbjct: 200 CAGFLTGIGLDTTVMMRSIPLR-GFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQ 258
Query: 288 VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNI 346
           +++T E  A G++     D VL + GR P T  L L+K G+ T+ K  +I V+ + AT++
Sbjct: 259 LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSV 318
Query: 347 PGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKT 404
           P +YAIGDV  G P L   A + G    + L GK   + DY  VP  V+T  E   VG +
Sbjct: 319 PHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLS 378
Query: 405 EEQVKEL----GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDK-ILGVHIMAPNA 459
           EE+   L     VE     +  L  + A   D ++  +K++  +E  + +LG+H + PNA
Sbjct: 379 EEEAVALHGQEHVEVYHAYYKPLEFTVADR-DASQCYIKMVCMREPPQLVLGLHFLGPNA 437
Query: 460 GELIHEAAM 468
           GE+    A+
Sbjct: 438 GEVTQGFAL 446

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 197/429 (45%), Gaps = 21/429 (4%)
Query: 58  AAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS 109
            A +AAQLG K    +         +  LGGTC+NVGCIP K L+H + +    +     
Sbjct: 47  CAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKK-LMHQAALLGGMIRDAHH 105
Query: 110 HGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTI 168
           +G + +  V+ +   M       V +L  G     +  KV Y      F+    V     
Sbjct: 106 YGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDK 165
Query: 169 EGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLE 228
            G  T++  ++I+IATG   +    +    +  ++S     L E P K +V+GA Y+ LE
Sbjct: 166 GGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALE 225
Query: 229 MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV-DLSGDG 287
                  +G + TV+  +  +    D ++       +E    +F+       +  L  + 
Sbjct: 226 CAGFLTGIGLDTTVMMRSIPLR-GFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQ 284
Query: 288 VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNI 346
           +++T E  A G++     D VL + GR P T  L L+K G+ T+ K  +I V+ + AT++
Sbjct: 285 LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSV 344
Query: 347 PGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKT 404
           P +YAIGDV  G P L   A + G    + L GK   + DY  VP  V+T  E   VG +
Sbjct: 345 PHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLS 404
Query: 405 EEQVKEL----GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDK-ILGVHIMAPNA 459
           EE+   L     VE     +  L  + A   D ++  +K++  +E  + +LG+H + PNA
Sbjct: 405 EEEAVALHGQEHVEVYHAYYKPLEFTVADR-DASQCYIKMVCMREPPQLVLGLHFLGPNA 463
Query: 460 GELIHEAAM 468
           GE+    A+
Sbjct: 464 GEVTQGFAL 472

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 197/415 (47%), Gaps = 40/415 (9%)
Query: 73  EKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAV 132
           + +G LGG CL  GC+PSK +        E + + A      ++V++ L     Q  K  
Sbjct: 34  DPKGELGGNCLYSGCVPSKTV-------REVIQT-AWRLTNIANVKIPLDFSTVQDRKDY 85
Query: 133 SNLTRGIEGLFKKNK--------VTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIAT 184
               R     FK++K        +T+ KGY K   P+ V V T EG     + + +IIA+
Sbjct: 86  VQELR-----FKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIAS 140
Query: 185 GSDVKSL--PGITIDEKRIVSSTGAL----ALNEVPKKLVVIGAGYIGLEMGSVWARLGS 238
           G++   L  PG+    +  ++S        +  ++P+ +V+IGAGYIGLE+ S++  +G 
Sbjct: 141 GAETAKLRLPGV----EYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGV 196
Query: 239 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD-LSGDGVKLTLEPAAG 297
           +  ++E     + +++ +       S+ K  +KF   + V  V  +  D  ++      G
Sbjct: 197 QTHIIEMLDRALITLEDQDIVNTLLSILKLNIKF--NSPVTEVKKIKDDEYEVIYSTKDG 254
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
            +K+I    VVL +AGR P     G  +IG+   K G I V+E   TNIP V+A GD   
Sbjct: 255 SKKSIFTNSVVL-AAGRRPVIPE-GAREIGLSISKTG-IVVDETMKTNIPNVFATGDANG 311
Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHVDY---DKVPGVVYTHPEVASVGKTEEQVKELGVE 414
                H A    +A    +      VDY     +P  +YT P ++ VG    + +++G+E
Sbjct: 312 LAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIE 371
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
               ++    +  A+     EG++K++ E+ + +++G  ++  ++  LI+E  +A
Sbjct: 372 IVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLA 426

>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 184/415 (44%), Gaps = 16/415 (3%)
Query: 68  KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVKFSSVEVDLPAMM 125
           + T I+  G +GG  +   C+PSK  + S+ +  E   +     H + F   ++ LP + 
Sbjct: 30  QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFH-IDFDDAKISLPQIH 87
Query: 126 AQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS------EVSVDTIEGGNTVVKGKN 179
           A+     +  +  I        V  + G G+ I  +       +     +G  +  +   
Sbjct: 88  ARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADV 147
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
           +++ATG+  + LP    D +RI++      L+ +P  L+V+G+G  G E    +  LG  
Sbjct: 148 VLVATGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVP 207
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
           VTVV     ++P  D +     + S  ++ ++     +   V  +G GV +T+      +
Sbjct: 208 VTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMT-----D 262
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
              +E    L++ G  P T+GLGL+++G++  +   + V+    T   G+YA GD     
Sbjct: 263 GRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
Query: 360 MLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVG 418
            LA  A   G +A    L      +    V   V+T PE+A+VG  +  +    V  R  
Sbjct: 323 PLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTI 382
Query: 419 KFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK 473
             P   N+RAK  +   G VKI   + T  ++G  ++AP A ELI   A+A  ++
Sbjct: 383 MLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNR 437

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 193/419 (46%), Gaps = 31/419 (7%)
Query: 75  RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSN 134
           +  +GGTC+NVGC+P K + ++ HM         ++G KF +++ D   ++      + +
Sbjct: 82  KWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRS 141
Query: 135 LTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGG---NTVVKGKNIIIATGSDVKSL 191
           L        + +KV Y+ G  K    + VS   ++G       V GK I+IATG      
Sbjct: 142 LNFSYMTGLRSSKVKYINGLAKLKDKNTVSY-YLKGDLSKEETVTGKYILIATGCRPHIP 200
Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
             +   ++  ++S    +L + P K +V+GA Y+ LE       LG +VTV    + ++ 
Sbjct: 201 DDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVA-VRSIVLR 259
Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
             D +   + +  +E+Q +  M K  ++   L+    K+ +E +   +KT    D VL +
Sbjct: 260 GFDQQCAVKVKLYMEEQGV--MFKNGILPKKLTKMDDKILVEFS---DKTSELYDTVLYA 314
Query: 312 AGRTPFTAGLGLDKIGVETDKM-GRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDG 369
            GR     GL L+ + +  +K   +I  +    TNIP ++A+GDV    P LA  A + G
Sbjct: 315 IGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAG 374
Query: 370 VACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFL- 423
                 L      + DY  +P  +YT  E  + G +EE+  EL     VE  + +F  L 
Sbjct: 375 EILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLE 434
Query: 424 --ANSRAKAID----------DAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMA 469
             A  R K I            +  + K++  K E ++++G H + PNAGE+    A+A
Sbjct: 435 ISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALA 493

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 202/454 (44%), Gaps = 64/454 (14%)
Query: 68  KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG--VKFSSVEVDLPAMM 125
           K   +EK   LGGTC+NVGC+P K + +++ + H+ + +   +G   KFS    +LP ++
Sbjct: 27  KVALVEK-SRLGGTCVNVGCVPKKIMFNAASV-HDILENSRHYGFDTKFS---FNLPLLV 81
Query: 126 AQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNT---------VVK 176
            ++DK +  L         K+KV   +G   F+S + + +   +  N          +++
Sbjct: 82  ERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILE 141
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
           G+NI+IA G+     P   I+    +SS     + E  KK+ ++G+GYI +E+ +V  RL
Sbjct: 142 GRNILIAVGNKPVFPPVKGIE--NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRL 198
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
           G +  +      I+   D  +    +  ++K  +  +    VV +    D   L++  + 
Sbjct: 199 GIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK-NLSIHLSD 257
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD-- 354
           G  +     D V+   GR+P T  L L+K+ VET+    I V+E   T++  +YA+GD  
Sbjct: 258 G--RIYEHFDHVIYCVGRSPDTENLKLEKLNVETNN-NYIVVDENQRTSVNNIYAVGDCC 314
Query: 355 ---------------VIPGPMLAHKAE---EDGVACVE---------------FLAGKHG 381
                          +       +K E   ED    V+                   K  
Sbjct: 315 MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTR 374
Query: 382 HVDYDKVPGVVYTHPEVASVGKTEEQVKEL----GVEYRVGKFP--FLANSRAKAIDDAE 435
             +Y  +P V+++HP + ++G +EE   ++     V+    KF   F +    +     +
Sbjct: 375 KTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEK 434
Query: 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
             +K++   + + I G+HI+  NA E++   A+A
Sbjct: 435 TYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVA 468

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 171/420 (40%), Gaps = 47/420 (11%)
Query: 65  LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM 124
           +G +   +++   LGG+C +  C+P        H++ +          +  S +   P M
Sbjct: 65  MGGRQLIVDRWPFLGGSCPHNACVPH-------HLFSDCAAELML--ARTFSGQYWFPDM 115
Query: 125 MAQ--KDKAVSNLTR----GIEGLFKKNKVTYVKGYGKFISPSEV-SVDTIEGGNTVVKG 177
             +    K V +L R    G  G+        +        P++V    T+E    V K 
Sbjct: 116 TEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKA 175
Query: 178 KNIIIATGSDVKSL--PGIT----IDEKRIVSSTGALALNEVP-KKLVVIGAGYIGLEMG 230
           KN+I+A G+   +L  PG+      D   +V       L+  P   +VV+G     +E G
Sbjct: 176 KNLILAVGAGPGTLDVPGVNAKGVFDHATLVEE-----LDYEPGSTVVVVGGSKTAVEYG 230
Query: 231 SVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VK 289
             +   G    ++     +    D E R      +++Q M+ +  + V  ++   +G V+
Sbjct: 231 CFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQ 290
Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
             +     GE  I E D V +  G  P +A L    +G++    G + VNE   T++P V
Sbjct: 291 AVVAMTPNGEMRI-ETDFVFLGLGEQPRSAELA-KILGLDLGPKGEVLVNEYLQTSVPNV 348
Query: 350 YAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK 409
           YA+GD+I GPM   KA + G      + G+         P  ++TH EV+ +G  EE+ +
Sbjct: 349 YAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEAR 408
Query: 410 ELGVEYRVGKFP----------FLANSRA------KAIDDAEGIVKILAEKETDKILGVH 453
             G E    K P            A+ R       K      G  KI+ + +T K+LG H
Sbjct: 409 AAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAH 468

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 36/261 (13%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
           P+   VIG G+IG+E        G EVT+VE A  + P +D E         +   ++ +
Sbjct: 187 PRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDYEXAAYVHEHXKNHDVELV 246
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP---FTAGLGLDKIGVET 330
            +  V  ++ +G  V+L          ++++ D ++++ G  P      G GL  +GV  
Sbjct: 247 FEDGVDALEENGAVVRLK-------SGSVIQTDXLILAIGVQPESSLAKGAGL-ALGVR- 297
Query: 331 DKMGRIPVNERFATNIPGVYAIGDVI----------PGPMLAHKAEEDGVACVEFLAGKH 380
              G I VNE+F T+ P +YAIGD I              LA  A   G    + +   H
Sbjct: 298 ---GTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETXIPLAWPANRQGRXLADII---H 351
Query: 381 GHVD--YDKVPGVVYTHP---EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435
           GH D  Y    G          VA+ G  E+ +K L + Y V      ANS A    +A 
Sbjct: 352 GHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEV--VHVQANSHAGYYPNAT 409
Query: 436 GI-VKILAEKETDKILGVHIM 455
            + +K++  K++ KI G   +
Sbjct: 410 PVLIKLIFNKDSGKIYGAQTL 430

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 170 GGNTVVKGKNIIIATGSDVKSLP-------GIT----IDEKRIVSSTGALALNEVPKKLV 218
           G    +K   +++A GS     P       G+T    +DE   V    A++  EV  K V
Sbjct: 107 GERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQH--AISAGEV-SKAV 163
Query: 219 VIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVPSMDGEIRKQFQR-SLEKQKMKFMLKT 276
           ++G G+IGLEM    A + G + TVVE A  I+P    +   Q  R  LEK  +      
Sbjct: 164 IVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGE 223
Query: 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI 336
           KVV ++     V   +      +K  L+AD+V+++AG +P T  L  D  G+E D  G I
Sbjct: 224 KVVRLEGENGKVARVIT-----DKRTLDADLVILAAGVSPNTQ-LARDA-GLELDPRGAI 276
Query: 337 PVNERFATNIPGVYAIGDVIPGPML 361
            V+ R  T+ P ++A GD +  P L
Sbjct: 277 IVDTRMRTSDPDIFAGGDCVTIPNL 301

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 208
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 209 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 257
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 258 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 298

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 209
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 210 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 258
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 259 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 299

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 208
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 209 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 257
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 258 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 298

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 208
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 209 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 257
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 258 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 298

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 208
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 209 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 257
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 258 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 298

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 208
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 209 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 257
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 258 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 298

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
           K++V+GAGY+ LE+       G   T++  +  I   MD ++ +     L+K+++ + L 
Sbjct: 149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 208
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            ++  ++    G ++T +        +   D+++   G  P +  +  +   ++ D+ G 
Sbjct: 209 EEINAIN----GNEITFKSGK-----VEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGF 257
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           IPVN++F TN+P +YAIGD+      +H    D  A V    G H
Sbjct: 258 IPVNDKFETNVPNIYAIGDI----ATSHYRHVDLPASVPLAWGAH 298

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 33/264 (12%)
Query: 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQK 269
           N+  K++ V+GAGYIG+E+   + R G EV +++     +    D ++     +++E+  
Sbjct: 191 NKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHG 250
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           ++      V  V  +G   K+        +K   + D+V+++ G  P T  LG  KI  +
Sbjct: 251 IQLAFGETVKEVAGNGKVEKIIT------DKNEYDVDMVILAVGFRPNTT-LGNGKI--D 301
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDV----------IPGPMLAHKAEEDGV-----ACVE 374
             + G   VN+R  T+IPGVYAIGD                LA  A   G+     AC  
Sbjct: 302 LFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGT 361
Query: 375 FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDA 434
            L G    +      G+      + S G T E+ K LG +  V ++    N + + I+  
Sbjct: 362 DLEG----IGVQGSNGISIYGLHMVSTGLTLEKAKRLGFDAAVTEYT--DNQKPEFIEHG 415
Query: 435 EG--IVKILAEKETDKILGVHIMA 456
                +KI+ +K++ +ILG  + A
Sbjct: 416 NFPVTIKIVYDKDSRRILGAQMAA 439

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 33/264 (12%)
Query: 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQK 269
           N+  K++ V+GAGYIG+E+   + R G EV +++     +    D ++     +++E+  
Sbjct: 191 NKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHG 250
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           ++      V  V  +G   K+        +K   + D+V+++ G  P T  LG  KI  +
Sbjct: 251 IQLAFGETVKEVAGNGKVEKIIT------DKNEYDVDMVILAVGFRPNTT-LGNGKI--D 301
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDV----------IPGPMLAHKAEEDGV-----ACVE 374
             + G   VN+R  T+IPGVYAIGD                LA  A   G+     AC  
Sbjct: 302 LFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGT 361
Query: 375 FLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDA 434
            L G    +      G+      + S G T E+ K LG +  V ++    N + + I+  
Sbjct: 362 DLEG----IGVQGSNGISIYGLHMVSTGLTLEKAKRLGFDAAVTEYT--DNQKPEFIEHG 415
Query: 435 EG--IVKILAEKETDKILGVHIMA 456
                +KI+ +K++ +ILG  + A
Sbjct: 416 NFPVTIKIVYDKDSRRILGAQMAA 439

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 53/255 (20%)
Query: 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256
           D  RI+ +   + +N V +   V+G G+IGLEM      LG + T++E A  ++  +D E
Sbjct: 138 DMDRILQT---IQMNNV-EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDRE 193
Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT--------------- 301
           +     +++  Q +   L T +  V      V+  +   A GE T               
Sbjct: 194 MAGFAHQAIRDQGVDLRLGTALSEVSYQ---VQTHVASDAAGEDTAHQHIKGHLSLTLSN 250
Query: 302 --ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             +LE D+++++ G  P T  L  D  G+   ++G I VN    T+ P +YA+GD +   
Sbjct: 251 GELLETDLLIMAIGVRPETQ-LARDA-GLAIGELGGIKVNAMMQTSDPAIYAVGDAV--- 305
Query: 360 MLAHKAEED---GVACVEFLAG---KHGHVDYDKVPGVVYTHP-------------EVAS 400
                 E+D   G AC+  LAG   + G +  D + G    +               V +
Sbjct: 306 -----EEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGA 360
Query: 401 VGKTEEQVKELGVEY 415
            GK E+Q+K+ G+ +
Sbjct: 361 TGKNEKQLKQAGIAF 375

>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 168 IEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE----VPKKLVVIGAG 223
           IE  +     K +II TG+  K L G+  + +     T   +  +      K++V IG G
Sbjct: 106 IETNDDTYHAKYVIITTGTTHKHL-GVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGG 164
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
             G       +     VT++E+    +P    E    + + ++K+ + +++  +V   ++
Sbjct: 165 NSGAIAAISMSEYVKNVTIIEY----MPKYMCE--NAYVQEIKKRNIPYIMNAQVT--EI 216
Query: 284 SGDGVKLT---LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
            GDG K+T    +    GE+ ++E D V +  G  P T+ L     GV+ D+ G I V+ 
Sbjct: 217 VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFL--KDSGVKLDERGYIVVDS 274
Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
           R  T++PGVYA GDV  G   A  A   G  C
Sbjct: 275 RQRTSVPGVYAAGDVTSGN-FAQIASAVGDGC 305

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
           +K++P    D +RI+ +   L  N+V + + +IG G IGLEM   +  LG +V ++E   
Sbjct: 168 LKTIP----DAERILKT---LETNKV-EDVTIIGGGAIGLEMAETFVELGKKVRMIERND 219
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307
            I    DG++ +   +  +K  ++ +    V      G+     +E   G  K    AD+
Sbjct: 220 HIGTIYDGDMAEYIYKEADKHHIEILTNENVKA--FKGNERVEAVETDKGTYK----ADL 273
Query: 308 VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
           VLVS G  P T    L+   + T+  G I VN    TN+  VYA GD
Sbjct: 274 VLVSVGVKPNTD--FLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGD 318

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 25/197 (12%)
Query: 171 GNTVVKGKNIIIATGSDVKSLPGITID------------EKRIVSSTGALALNEVPKKLV 218
           G+ +  GK +I ATG D + L  +  D              R+++   A A     K  V
Sbjct: 103 GSAIEYGK-LIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGA-----KNAV 156
Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
           VIG GYIGLE  +V  + G  VT++E    ++  + GE   +F ++ E +     L+T  
Sbjct: 157 VIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQA-EHRAHGVDLRTGA 215
Query: 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
               + GDG K+T      G  +++ AD+V+V  G  P    L    I         + V
Sbjct: 216 AMDCIEGDGTKVTGVRMQDG--SVIPADIVIVGIGIVPCVGAL----ISAGASGGNGVDV 269
Query: 339 NERFATNIPGVYAIGDV 355
           +E   T++  VYAIGD 
Sbjct: 270 DEFCRTSLTDVYAIGDC 286

>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 167 TIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVSSTGAL-ALNEVPKKLVVIGAG 223
           T+ G N   + K +I+ATG+D + L  PG      + VS+           KK+VVIG G
Sbjct: 102 TVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGG 161
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT---KVVG 280
              +E G    +   EVTV+     +  +   +      R+    KMKF+  T   ++ G
Sbjct: 162 DAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQ-----ARAFANPKMKFIWDTAVEEIQG 216
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
            D S  GVK  L     GE + L  D V +  G  P TA +  D + +  D  G + V +
Sbjct: 217 AD-SVSGVK--LRNLKTGEVSELATDGVFIFIGHVPNTAFVK-DTVSLRDD--GYVDVRD 270
Query: 341 RFATNIPGVYAIGDV 355
              TNIP ++A GDV
Sbjct: 271 EIYTNIPMLFAAGDV 285

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 168 IEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVS----STGALALNEVPKKLVVIG 221
           I  GN  +  K +IIATG++ K +  PG      R VS      GA   N   K+L VIG
Sbjct: 96  INFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKN---KRLFVIG 152
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF---QRSLEKQKMKFMLKTKV 278
            G   +E G+   +   +VT+V            E+R Q     R+ +  K+ F+    +
Sbjct: 153 GGDSAVEEGTFLTKFADKVTIVH--------RRDELRAQRILQDRAFKNDKIDFIWSHTL 204
Query: 279 VGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
             ++     V  +TL     G +   EAD V +  G  P TA      +G+ T+ +G I 
Sbjct: 205 KSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGXKPLTAPF--KDLGI-TNDVGYIV 261
Query: 338 VNERFATNIPGVYAIGDV 355
             +   T++PG++A GDV
Sbjct: 262 TKDDXTTSVPGIFAAGDV 279

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
           +K++P    D +RI+ +   L  N+V + + +IG G IGLE    +  LG +V  +E   
Sbjct: 168 LKTIP----DAERILKT---LETNKV-EDVTIIGGGAIGLEXAETFVELGKKVRXIERND 219
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307
            I    DG+  +   +  +K  ++ +    V      G+     +E   G  K    AD+
Sbjct: 220 HIGTIYDGDXAEYIYKEADKHHIEILTNENVKA--FKGNERVEAVETDKGTYK----ADL 273
Query: 308 VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
           VLVS G  P T    L+   + T+  G I VN    TN+  VYA GD
Sbjct: 274 VLVSVGVKPNTD--FLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGD 318

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 205 TGALA---LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQ 260
           +GALA   L E  + + VIGAG IG E      +    V V E   +++P   D E   +
Sbjct: 135 SGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLENLLPKYFDKEXVAE 194
Query: 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320
            Q+SLEKQ + F  +  V+G++ + +G+ L        E+ I   D  + +    P  A 
Sbjct: 195 VQKSLEKQAVIFHFEETVLGIEETANGIVL-----ETSEQEI-SCDSGIFALNLHPQLAY 248
Query: 321 LGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           L   KI    D+   I V+    T++P V+AIGD I
Sbjct: 249 LD-KKIQRNLDQT--IAVDAYLQTSVPNVFAIGDCI 281

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 53/255 (20%)
Query: 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256
           D  RI+ +   +  N V +   V+G G+IGLE       LG + T++E A  +   +D E
Sbjct: 138 DXDRILQT---IQXNNV-EHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDRE 193
Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT--------------- 301
                 +++  Q +   L T +  V      V+  +   A GE T               
Sbjct: 194 XAGFAHQAIRDQGVDLRLGTALSEVSYQ---VQTHVASDAAGEDTAHQHIKGHLSLTLSN 250
Query: 302 --ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             +LE D+++ + G  P T  L  D  G+   ++G I VN    T+ P +YA+GD +   
Sbjct: 251 GELLETDLLIXAIGVRPETQ-LARDA-GLAIGELGGIKVNAXXQTSDPAIYAVGDAV--- 305
Query: 360 MLAHKAEED---GVACVEFLAG---KHGHVDYDKVPGVVYTHP-------------EVAS 400
                 E+D   G AC+  LAG   + G    D   G    +               V +
Sbjct: 306 -----EEQDFVTGQACLVPLAGPANRQGRXAADNXFGREERYQGTQGTAICKVFDLAVGA 360
Query: 401 VGKTEEQVKELGVEY 415
            GK E+Q+K+ G+ +
Sbjct: 361 TGKNEKQLKQAGIAF 375

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 53/255 (20%)
Query: 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256
           D  RI+ +   +  N V +   V+G G+IGLE       LG + T++E A  +   +D E
Sbjct: 138 DXDRILQT---IQXNNV-EHATVVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDRE 193
Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT--------------- 301
                 +++  Q +   L T +  V      V+  +   A GE T               
Sbjct: 194 XAGFAHQAIRDQGVDLRLGTALSEVSYQ---VQTHVASDAAGEDTAHQHIKGHLSLTLSN 250
Query: 302 --ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
             +LE D+++ + G  P T  L  D  G+   ++G I VN    T+ P +YA+GD +   
Sbjct: 251 GELLETDLLIXAIGVRPETQ-LARDA-GLAIGELGGIKVNAXXQTSDPAIYAVGDAV--- 305
Query: 360 MLAHKAEED---GVACVEFLAG---KHGHVDYDKVPGVVYTHP-------------EVAS 400
                 E+D   G AC+  LAG   + G    D   G    +               V +
Sbjct: 306 -----EEQDFVTGQACLVPLAGPANRQGRXAADNXFGREERYQGTQGTAICKVFDLAVGA 360
Query: 401 VGKTEEQVKELGVEY 415
            GK E+Q+K+ G+ +
Sbjct: 361 TGKNEKQLKQAGIAF 375

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK-MKFM 273
            +LVVIG GYIGLE+ +   +    VT+++ AA ++  +       F   L ++  +   
Sbjct: 149 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIR 208
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGV 328
             T+V G ++S D  K+T      G  T L AD+V+   G  P       AGL +D    
Sbjct: 209 TGTQVCGFEMSTDQQKVTAVLCEDG--TRLPADLVIAGIGLIPNCELASAAGLQVDN--- 263
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGD 354
                  I +NE   T+ P + A+GD
Sbjct: 264 ------GIVINEHMQTSDPLIMAVGD 283

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK-MKFM 273
            +LVVIG GYIGLE+ +   +    VT+++ AA ++  +       F   L ++  +   
Sbjct: 150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIR 209
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGV 328
             T+V G ++S D  K+T      G  T L AD+V+   G  P       AGL +D    
Sbjct: 210 TGTQVCGFEMSTDQQKVTAVLCEDG--TRLPADLVIAGIGLIPNCELASAAGLQVDN--- 264
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGD 354
                  I +NE   T+ P + A+GD
Sbjct: 265 ------GIVINEHMQTSDPLIMAVGD 284

>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 24/196 (12%)
Query: 174 VVKGKNIIIATGSDVKSLPGITIDEKRIVSST------GALALNEVPKKLVVIGAGYIGL 227
           V+K ++II+ATG+  +++     D+ R    T      G L      K++ VIG G  G+
Sbjct: 101 VLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKG---KRVAVIGGGNSGV 157
Query: 228 EMGSVWARLGSEVTVVEFAADIVPSMDG-EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD 286
           E     A +   VT++EFA    P M   ++ +   RSL+   +    +T     ++ GD
Sbjct: 158 EAAIDLAGIVEHVTLLEFA----PEMKADQVLQDKLRSLKNVDIILNAQT----TEVKGD 209
Query: 287 GVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
           G K   L       G+   +E   + V  G  P T  L   +  VE ++MG I ++ +  
Sbjct: 210 GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL---EGAVERNRMGEIIIDAKCE 266
Query: 344 TNIPGVYAIGDVIPGP 359
           TN+ GV+A GD    P
Sbjct: 267 TNVKGVFAAGDCTTVP 282

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 173 TVVKGKNIIIATGSDVKS-------LPGI----TIDEKRIVSSTGALALNEVPKKLVVIG 221
           T +    I+IATGS  ++       LPG+    T  + +++  +   A      +L+++G
Sbjct: 96  TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSA-----TRLLIVG 150
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFMLKTKVVG 280
            G IG E+ +   +LG  VT++E   +++  + G     + R L  +  ++  L T VVG
Sbjct: 151 GGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVG 210
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF-----TAGLGLDKIGVETDKMGR 335
              SG+G    LE     +     AD  L+  G  P       AGL  D+ GV  D  G 
Sbjct: 211 --FSGEG---QLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDR-GVIVDHCG- 263
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLA 362
                  AT   GV+A+GDV   P+ A
Sbjct: 264 -------ATLAKGVFAVGDVASWPLRA 283

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEIRKQFQRSLEKQK 269
             +VVIG+GYIG+E    +A+ G +VTV+    DI+       +D E        +E   
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI----DILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +       V   +  G   K+        +K   +AD+V+V+ G  P TA L   K  +E
Sbjct: 206 ITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVAVGVRPNTAWL---KGTLE 256
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVI-----PGPM-----LAHKAEEDGVACVEFLAGK 379
               G I  +E   T+ P V+A+GD       P        LA  A + G   V     K
Sbjct: 257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAV-----K 311
Query: 380 HGHVDYDKVPGV-------VYTHPEVASVGKTEEQVKELGVEYRVGKF--PFLANSRAKA 430
           +        PGV       V+ + + AS G  E   ++LG E +       +L +     
Sbjct: 312 NLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNP-- 368
Query: 431 IDDAEGIVKILAEKETDKILGVHIMAP-------NAGELIHEAAMATHD 472
            D  +   K++ + ET +ILG  +M+        NA  L  +A M   D
Sbjct: 369 -DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIED 416

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEIRKQFQRSLEKQK 269
             +VVIG+GYIG+E    +A+ G +VTV+    DI+       +D E        +E   
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI----DILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +       V   +  G   K+        +K   +AD+V+V+ G  P TA L   K  +E
Sbjct: 206 ITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVAVGVRPNTAWL---KGTLE 256
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVI-----PGPM-----LAHKAEEDGVACVEFLAGK 379
               G I  +E   T+ P V+A+GD       P        LA  A + G   V     K
Sbjct: 257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAV-----K 311
Query: 380 HGHVDYDKVPGV-------VYTHPEVASVGKTEEQVKELGVEYRVGKF--PFLANSRAKA 430
           +        PGV       V+ + + AS G  E   ++LG E +       +L +     
Sbjct: 312 NLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNP-- 368
Query: 431 IDDAEGIVKILAEKETDKILGVHIMAP-------NAGELIHEAAMATHD 472
            D  +   K++ + ET +ILG  +M+        NA  L  +A M   D
Sbjct: 369 -DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIED 416

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEIRKQFQRSLEKQK 269
             +VVIG+GYIG+E    +A+ G +VTV+    DI+       +D E        +E   
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI----DILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +       V   +  G   K+        +K   +AD+V+V+ G  P TA L   K  +E
Sbjct: 206 ITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVAVGVRPNTAWL---KGTLE 256
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVI-----PGPM-----LAHKAEEDGVACVEFLAGK 379
               G I  +E   T+ P V+A+GD       P        LA  A + G   V     K
Sbjct: 257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAV-----K 311
Query: 380 HGHVDYDKVPGV-------VYTHPEVASVGKTEEQVKELGVEYRVGKF--PFLANSRAKA 430
           +        PGV       V+ + + AS G  E   ++LG E +       +L +     
Sbjct: 312 NLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNP-- 368
Query: 431 IDDAEGIVKILAEKETDKILGVHIMAP-------NAGELIHEAAMATHD 472
            D  +   K++ + ET +ILG  +M+        NA  L  +A M   D
Sbjct: 369 -DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIED 416

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEIRKQFQRSLEKQK 269
             +VVIG+GYIG+E    +A+ G +VTV+    DI+       +D E        +E   
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI----DILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +       V   +  G   K+        +K   +AD+V+V+ G  P TA L   K  +E
Sbjct: 206 ITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVAVGVRPNTAWL---KGTLE 256
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVI-----PGPM-----LAHKAEEDGVACVEFLAGK 379
               G I  +E   T+ P V+A+GD       P        LA  A + G   V     K
Sbjct: 257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAV-----K 311
Query: 380 HGHVDYDKVPGV-------VYTHPEVASVGKTEEQVKELGVEYRVGKF--PFLANSRAKA 430
           +        PGV       V+ + + AS G  E   ++LG E +       +L +     
Sbjct: 312 NLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNP-- 368
Query: 431 IDDAEGIVKILAEKETDKILGVHIMAP-------NAGELIHEAAMATHD 472
            D  +   K++ + ET +ILG  +M+        NA  L  +A M   D
Sbjct: 369 -DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIED 416

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEIRKQFQRSLEKQK 269
             +VVIG+GYIG+E    +A+ G +VTV+    DI+       +D E        +E   
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI----DILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +       V   +  G   K+        +K   +AD+V+V+ G  P TA L   K  +E
Sbjct: 206 ITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVAVGVRPNTAWL---KGTLE 256
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVI-----PGPM-----LAHKAEEDGVACVEFLAGK 379
               G I  +E   T+ P V+A+GD       P        LA  A + G   V     K
Sbjct: 257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAV-----K 311
Query: 380 HGHVDYDKVPGV-------VYTHPEVASVGKTEEQVKELGVEYRVGKF--PFLANSRAKA 430
           +        PGV       V+ + + AS G  E   ++LG E +       +L +     
Sbjct: 312 NLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNP-- 368
Query: 431 IDDAEGIVKILAEKETDKILGVHIMAP-------NAGELIHEAAMATHD 472
            D  +   K++ + ET +ILG  +M+        NA  L  +A M   D
Sbjct: 369 -DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIED 416

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MDGEIRKQFQRSLEKQK 269
             +VVIG+GYIG+E    +A+ G +VTV+    DI+       +D E        +E   
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVI----DILDRPLGVYLDKEFTDVLTEEMEANN 205
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +       V   +  G   K+        +K   +AD+V+V+ G  P TA L   K  +E
Sbjct: 206 ITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVAVGVRPNTAWL---KGTLE 256
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVI-----PGPM-----LAHKAEEDGVACVEFLAGK 379
               G I  +E   T+ P V+A+GD       P        LA  A + G   V     K
Sbjct: 257 LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAV-----K 311
Query: 380 HGHVDYDKVPGV-------VYTHPEVASVGKTEEQVKELGVEYRVGKF--PFLANSRAKA 430
           +        PGV       V+ + + AS G  E   ++LG E +       +L +     
Sbjct: 312 NLEEPVKPFPGVQGSSGLAVFDY-KFASTGINEVMAQKLGKETKAVTVVEDYLMDFNP-- 368
Query: 431 IDDAEGIVKILAEKETDKILGVHIMAP-------NAGELIHEAAMATHD 472
            D  +   K++ + ET +ILG  +M+        NA  L  +A M   D
Sbjct: 369 -DKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIED 416

>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase Length = 335

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 20/189 (10%)
Query: 176 KGKNIIIATGSDVKSL--PGITIDEKRIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSV 232
           + + +I+A G+  + L  PG      R VSS           + + VIG G   +E  + 
Sbjct: 114 RARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATF 173
Query: 233 WARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV 288
             R    VT+V    EF A  +            R+    K++F+    VV VD      
Sbjct: 174 LTRFARSVTLVHRRDEFRASKI---------MLDRARNNDKIRFLTNHTVVAVDGDTTVT 224
Query: 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIP 347
            L +     G +T L    V V+ G  P +   GL +  ++ D  G + V  R  +T++P
Sbjct: 225 GLRVRDTNTGAETTLPVTGVFVAIGHEPRS---GLVREAIDVDPDGYVLVQGRTTSTSLP 281
Query: 348 GVYAIGDVI 356
           GV+A GD++
Sbjct: 282 GVFAAGDLV 290

>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 174 VVKGKNIIIATGSDVKSLPGITIDEKRIVSST------GALALNEVPKKLVVIGAGYIGL 227
           V+K ++IIIATG+  +++     D+ R    T      G L      K++ VIG G  G+
Sbjct: 312 VLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKG---KRVAVIGGGNSGV 368
Query: 228 EMGSVWARLGSEVTVVEFAADIVPSMDG-EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD 286
           E     A +   VT++EFA    P M   ++ +   RSL+   +    +T     ++ GD
Sbjct: 369 EAAIDLAGIVEHVTLLEFA----PEMKADQVLQDKVRSLKNVDIILNAQT----TEVKGD 420
Query: 287 GVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
           G K   L       G+   +    + V  G  P T  L   +  +E ++MG I ++ +  
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL---EGALERNRMGEIIIDAKCE 477
Query: 344 TNIPGVYAIGDVIPGP 359
           T++ GV+A GD    P
Sbjct: 478 TSVKGVFAAGDCTTVP 493

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 42/199 (21%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFM 273
           ++++++GAG IG E  +  +  G ++ VV     ++P  +     K  Q  LE   ++F 
Sbjct: 146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFH 205
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP-----FTAGLGLDKIGV 328
           L   +  +  +G+G++  L      +  ++  D+V+ + G  P     F AGL +++ G+
Sbjct: 206 LGPVLASLKKAGEGLEAHLS-----DGEVIPCDLVVSAVGLRPRTELAFAAGLAVNR-GI 259
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGV---------AC----VEF 375
             D+  R        T+   +YA+GD          AE DG+         AC     + 
Sbjct: 260 VVDRSLR--------TSHANIYALGDC---------AEVDGLNLLYVMPLMACARALAQT 302
Query: 376 LAGKHGHVDYDKVPGVVYT 394
           LAG    V Y  +P  V T
Sbjct: 303 LAGNPSQVAYGPMPVTVKT 321

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	0.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	0.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	0.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	0.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	0.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	0.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	0.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	0.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	0.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	0.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	0.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	0.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	0.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	0.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	0.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	0.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	0.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	1e-177
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-155
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	1e-152
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	1e-149
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-147
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-147
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	1e-143
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-142
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-142
4dna_A	463	Probable glutathione reductase; structural genomic	1e-140
1fec_A	490	Trypanothione reductase; redox-active center, oxid	1e-137
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	1e-136
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-134
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	2e-36
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	6e-36
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	5e-35
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	6e-35
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	9e-35
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-34
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	4e-34
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	1e-33
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	5e-32
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	9e-26
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	4e-24
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	7e-24
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	1e-23
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-23
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	4e-23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-22
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-21
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	4e-21
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-20
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	5e-20
4fk1_A	304	Putative thioredoxin reductase; structural genomic	8e-20
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-19
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-19
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-19
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	4e-19
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	8e-19
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-18
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	8e-16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	2e-05
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	4e-15
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	8e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	7e-15
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	6e-13
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-12
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	5e-12
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	4e-04
3r9u_A	315	Thioredoxin reductase; structural genomics, center	8e-12
3r9u_A	315	Thioredoxin reductase; structural genomics, center	6e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	4e-10
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	5e-10
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-09
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-08
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	3e-08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	5e-08
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	5e-08
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	7e-08
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	8e-08
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	2e-07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-07
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-07
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	3e-07
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	4e-07
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	8e-07
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	1e-06
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-06
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	3e-06
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	3e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	5e-06
3atr_A	453	Conserved archaeal protein; saturating double bond	6e-06
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	6e-06
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	8e-06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	8e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	1e-05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	2e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-05
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	2e-05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	4e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	7e-05
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	1e-04
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	1e-04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	2e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-04
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	3e-04
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	4e-04
2bry_A	497	NEDD9 interacting protein with calponin homology a	6e-04
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	7e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	7e-04
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	7e-04
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	8e-04
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	9e-04

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score =  770 bits (1991), Expect = 0.0
 Identities = 392/470 (83%), Positives = 422/470 (89%), Gaps = 30/470 (6%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
           AS SDENDVV+IGGGPGGYVAAIKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSS
Sbjct: 1   ASGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSS 60

Query: 98  HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
           HMYHEA HSFA+HGVK S+VE+DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF
Sbjct: 61  HMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 120

Query: 158 ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKL 217
           +SPSE+SVDTIEG NTVVKGK+IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKL
Sbjct: 121 VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKL 180

Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
           VVIGAGYIGLEMGSVW R+GSEVTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTK
Sbjct: 181 VVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTK 240

Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
           VVGVD SGDGVKLT+EP+AGGE+TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI 
Sbjct: 241 VVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRIL 300

Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPE 397
           VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PE
Sbjct: 301 VNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPE 360

Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
           VASVGKTEEQVKE GVEYRVGKFPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAP
Sbjct: 361 VASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAP 420

Query: 458 NAGELI------------------------------HEAAMATHDKPIHI 477
           NAGELI                               EAAMAT+DKPIHI
Sbjct: 421 NAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHI 470

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score =  770 bits (1991), Expect = 0.0
 Identities = 251/480 (52%), Positives = 322/480 (67%), Gaps = 32/480 (6%)

Query: 30  SFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP 89
                  +  +    D++VIG GPGGYV AIKAAQLG+K   +EKR   GGTCLNVGCIP
Sbjct: 12  DLGTENLYFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIP 71

Query: 90  SKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT 149
           SKALLH+S M+H+A H   + GV+ ++ +++L  MMA KD  V +   G+  LFKKNK+ 
Sbjct: 72  SKALLHASEMFHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKID 131

Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI--DEKRIVSSTGA 207
             +G GK +   +VSV   +G   V++ KN++IATGSDV  +PG+ +  DEK IVSSTGA
Sbjct: 132 GFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKTIVSSTGA 191

Query: 208 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267
           LAL +VP  ++V+G G IGLE+GSVWARLG++VTVVEF   I+  MDGE+ KQ QR L K
Sbjct: 192 LALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTK 251

Query: 268 QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
           Q + F L  KV G   SGDG K+T EP  GGE T L+A+VVL++ GR P T GLGL K G
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAG 311

Query: 328 VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDK 387
           V  D  GR+ ++  F T+I GVYAIGDV+ GPMLAHKAE++GVA  E +AG+ GHV+YD 
Sbjct: 312 VVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDV 371

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           +PGVVYT PEVASVGKTEE++K  GV Y++GKFPF AN RA+A+   +G VKILA+KETD
Sbjct: 372 IPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETD 431

Query: 448 KILGVHIMAPNAGELI------------------------------HEAAMATHDKPIHI 477
           ++LG HI+   AGE+I                               EAA++T  KPIH+
Sbjct: 432 RVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFKPIHM 491

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score =  755 bits (1953), Expect = 0.0
 Identities = 257/435 (59%), Positives = 320/435 (73%), Gaps = 3/435 (0%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
           A    + DV VIG GPGGYVAAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++S
Sbjct: 1   ADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNS 60

Query: 98  HMYHEA-MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
           H YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV +V GYGK
Sbjct: 61  HYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK 120

Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKK 216
               ++V+    +GG  V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP+K
Sbjct: 121 ITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEK 180

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFMLK 275
           +VVIGAG IG+E+GSVW RLG++VT VEF   +    +D EI K FQR L+KQ  KF L 
Sbjct: 181 MVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLN 240

Query: 276 TKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
           TKV G     DG + +++E A+GG+  ++  DV+LV  GR PFT  LGL+++G+E D  G
Sbjct: 241 TKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRG 300

Query: 335 RIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT 394
           RIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YT
Sbjct: 301 RIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYT 360

Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHI 454
           HPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI
Sbjct: 361 HPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHI 420

Query: 455 MAPNAGELIHEAAMA 469
           + P AGE+++EAA+A
Sbjct: 421 LGPGAGEMVNEAALA 435

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score =  755 bits (1951), Expect = 0.0
 Identities = 217/473 (45%), Positives = 294/473 (62%), Gaps = 38/473 (8%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALL 94
           S + DV+VIG GPGGYVAAIK+AQLGLKT  IEK      + ALGGTCLNVGCIPSKALL
Sbjct: 1   SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60

Query: 95  HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
            SS+ +HEA  SF  HG+    V +D+P M+A+KD+ V NLT G+  L K N VT  +G+
Sbjct: 61  DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120

Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 214
           GK ++  +V V   +G + V+  +N+I+A+GS    +P   +D+  IV STGAL    VP
Sbjct: 121 GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVP 180

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
            KL VIGAG IGLE+GSVWARLG+EVTV+E     +P++D ++ K+ Q+ L KQ +K +L
Sbjct: 181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 240

Query: 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
             +V G ++    V +    A G +      D ++V+ GR P T  L     GV  D+ G
Sbjct: 241 GARVTGTEVKNKQVTVKFVDAEGEKS--QAFDKLIVAVGRRPVTTDLLAADSGVTLDERG 298

Query: 335 RIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT 394
            I V++  AT++PGVYAIGDV+ G MLAHKA E+GV   E +AG    ++YD +P V+YT
Sbjct: 299 FIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYT 358

Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHI 454
           HPE+A VGKTE+ +K  GV   VG FPF A+ RA A +D  G VK++A+ +TD++LGVH+
Sbjct: 359 HPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHV 418

Query: 455 MAPNAGELI------------------------------HEAAMATHDKPIHI 477
           + P+A EL+                              HEAA+A     IH+
Sbjct: 419 IGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIHV 471

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score =  752 bits (1943), Expect = 0.0
 Identities = 237/440 (53%), Positives = 317/440 (72%), Gaps = 9/440 (2%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           + +  +DVV+IGGGP GYVAAIKAAQLG  T C+EKRG LGGTCLNVGCIPSKALL++SH
Sbjct: 1   TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSH 60

Query: 99  MYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
           ++H+        G+  +  +++++      KD AV  LT GIE LFKKNKVTY KG G F
Sbjct: 61  LFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF 120

Query: 158 ISPSEVSVDTIEGG------NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
              +++ V  ++G       + ++  KNII+ATGS+V   PGI IDE++IVSSTGAL+L 
Sbjct: 121 EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLK 180

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
           E+PK+L +IG G IGLEMGSV++RLGS+VTVVEF   I  SMDGE+ K  Q+ L+KQ + 
Sbjct: 181 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD 240

Query: 272 FMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           F L TKV+    + D   V++ +E     ++  LEA+V+LV+ GR P+ AGLG +KIG+E
Sbjct: 241 FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLE 300

Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVP 389
            DK GR+ ++++F +  P +  +GDV  GPMLAHKAEE+G+A VE L   HGHV+Y+ +P
Sbjct: 301 VDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIP 360

Query: 390 GVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKI 449
            V+Y+HPEVA VGKTEEQ+KE G++Y++GKFPF ANSRAK   D EG VKIL + +T++I
Sbjct: 361 SVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERI 420

Query: 450 LGVHIMAPNAGELIHEAAMA 469
           LG HI+ PNAGE+I EA +A
Sbjct: 421 LGAHIIGPNAGEMIAEAGLA 440

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score =  745 bits (1925), Expect = 0.0
 Identities = 249/431 (57%), Positives = 317/431 (73%), Gaps = 4/431 (0%)

Query: 42  DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
           +  DVVVIGGGPGGYVA+IKAAQLG+KT C+EKRGALGGTCLNVGCIPSKALLH++H+YH
Sbjct: 1   NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYH 60

Query: 102 EAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
           +A  +FA +G+     V +D   M  QK++AV  LT G+E LFKKNKVTY KG G F + 
Sbjct: 61  DAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETA 120

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
             + V+ ++G   +++ K  IIATGS+   LP +  DEK ++SSTGALAL  VPK +VVI
Sbjct: 121 HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMVVI 180

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFMLKTKVV 279
           G G IGLE+GSVWARLG+EVTVVEFA    P++D ++      +L K +KMKFM  TKVV
Sbjct: 181 GGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVV 240

Query: 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339
           G   +GD V L +E    G++  +  + +LVS GR PFT GLGLDKI V  ++ G + + 
Sbjct: 241 GGTNNGDSVSLEVE-GKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIG 299

Query: 340 ERFATNIPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEV 398
           + F T+IP VYAIGDV+  GPMLAHKAE++GVAC E LAGK GHV+Y  +P V+YT PEV
Sbjct: 300 DHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEV 359

Query: 399 ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
           ASVGK+E+++K+ GV Y+VGKFPF ANSRAKA+   +G VK+L +K TD+ILGVHI+   
Sbjct: 360 ASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTT 419

Query: 459 AGELIHEAAMA 469
           AGELI EA +A
Sbjct: 420 AGELIGEACLA 430

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score =  735 bits (1899), Expect = 0.0
 Identities = 211/463 (45%), Positives = 293/463 (63%), Gaps = 40/463 (8%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D++VIG GPGGYVAAI+AAQLG+K   +EK  ALGGTCL VGCIPSKALL ++   +EA 
Sbjct: 3   DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAK 62

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                 G K   VE+DLPA+MA KDK V   T+G+E LFKKN +   +G  +F+S  +V 
Sbjct: 63  KGL--LGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVL 120

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
           V+        ++ + I+IATGS     P   +D +R+V+ST AL+  EVPK+L+V+G G 
Sbjct: 121 VE---ETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGV 177

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
           IGLE+G VW RLG+EV V+E+   I+P+MD E+ +  +R  +KQ +      +V  V   
Sbjct: 178 IGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE 237

Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
             G ++ LE    G + + EAD VLV+ GR P+T GL L+  G+ TD+ GRIPV+E   T
Sbjct: 238 AKGARVELE----GGEVL-EADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT 292

Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKT 404
            +P +YAIGDV+ GPMLAHKA E+G+A VE +    GHVDY  +P VVYTHPE+A+VG T
Sbjct: 293 RVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYT 352

Query: 405 EEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI- 463
           EE++K  G+ Y+VGKFP+ A+ RA+A+ + EG +K+LA  +TD+ILGVH +    G+++ 
Sbjct: 353 EEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLA 412

Query: 464 -----------------------------HEAAMATHDKPIHI 477
                                         EAA+A  ++PIH+
Sbjct: 413 EAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWERPIHL 455

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score =  732 bits (1892), Expect = 0.0
 Identities = 187/442 (42%), Positives = 255/442 (57%), Gaps = 13/442 (2%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
            SA  E DVVV+GGGPGGY AA  AA  GLK   +E+   LGG CLNVGCIPSKALLH++
Sbjct: 1   GSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNA 60

Query: 98  HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
            +  E  H  A++G+K+   E+D+  + A KD  VS LT G+ G+ K  KV  ++G G+F
Sbjct: 61  AVIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF 119

Query: 158 ISPSEVSVDTIEGG----------NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGA 207
           + P  + V    G             +V  KN IIA GS V  LP I  D  RI+ S+GA
Sbjct: 120 LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDP-RIIDSSGA 178

Query: 208 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267
           LAL EVP KL++IG G IGLEMG+V++ LGS + VVE    ++   D ++ K +Q+  E 
Sbjct: 179 LALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEY 238

Query: 268 QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
           +    M+ TK V V+   DGV +T E A   ++     D VLV+AGR P    +  +K G
Sbjct: 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQ-RYDAVLVAAGRAPNGKLISAEKAG 297

Query: 328 VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDK 387
           V     G I V+++  TN+P +YAIGD++  PMLAHKA  +G    E  AG   + D   
Sbjct: 298 VAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARV 357

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           +PGV YT PEVA VG+TE   K    +     FP+ A+ RA A    +   K++ + ET 
Sbjct: 358 IPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETG 417

Query: 448 KILGVHIMAPNAGELIHEAAMA 469
           +I+G  I+ PN G++I E  +A
Sbjct: 418 RIIGGGIVGPNGGDMIGEVCLA 439

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score =  721 bits (1863), Expect = 0.0
 Identities = 189/429 (44%), Positives = 264/429 (61%), Gaps = 6/429 (1%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
           + E + +V+G GPGGYVAAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y
Sbjct: 1   AIETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRY 59

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
            +A H     G+K  +V +D   +   K   V  LT G+EGL K NKV  VKG   F+  
Sbjct: 60  EQAKH-SEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA 118

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
           + V V            KN IIATGS    LP       RI+ STGAL L EVPK LVVI
Sbjct: 119 NTVRVVN-GDSAQTYTFKNAIIATGSRPIELPNFKFSN-RILDSTGALNLGEVPKSLVVI 176

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           G GYIG+E+G+ +A  G++VT++E A +I+   + ++    ++ L+K+ ++ +      G
Sbjct: 177 GGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKG 236

Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
            +   DGV +T E  A GE   ++AD VLV+ GR P T  LGL++IG++    G I V++
Sbjct: 237 AEEREDGVTVTYE--ANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQ 294

Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
           +  T++P ++AIGD++PGP LAHKA  +G    E +AG    VDY  +P VV++ PE AS
Sbjct: 295 QCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECAS 354

Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
           VG  E+Q K+ G++    KFPF AN RA A++D +G +K++  KE   I+G  I+ PNA 
Sbjct: 355 VGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNAS 414

Query: 461 ELIHEAAMA 469
           ++I E  +A
Sbjct: 415 DMIAELGLA 423

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score =  713 bits (1844), Expect = 0.0
 Identities = 201/432 (46%), Positives = 271/432 (62%), Gaps = 11/432 (2%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           +     D++VIG GPGGY AAI+AAQLGLK   +E  G +GG CLNVGCIP+KALLH++ 
Sbjct: 2   TPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEA-GEVGGVCLNVGCIPTKALLHAAE 60

Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
             H         G+K +  E+DL  +   +D+ V  LT G+  L K N V  ++G+ + +
Sbjct: 61  TLHHLKV-AEGFGLK-AKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLV 118

Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE-VPKKL 217
            P EV V     G      K++I+ATGS+   L G    E  +  ST AL + E +PK+L
Sbjct: 119 GPKEVEV-----GGERYGAKSLILATGSEPLELKGFPFGE-DVWDSTRALKVEEGLPKRL 172

Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
           +VIG G +GLE+G V+ RLG+EVT++E+  +I+P  D E     +R+LEK+ ++   KTK
Sbjct: 173 LVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTK 232

Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
            VG +   DG+ + LEPA GGE   +  D VLV+ GR P T GLGL+K GV+ D+ G I 
Sbjct: 233 AVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIR 292

Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPE 397
           VN R  T++PGVYAIGD    P+LAHKA  +G+   E  AGK    DY  VP VVYT PE
Sbjct: 293 VNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPE 351

Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
            A VG TEE+ K  G + +VGKFP  A+ RA  +  AEG+VK++ ++ETD +LGV I+ P
Sbjct: 352 WAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGP 411

Query: 458 NAGELIHEAAMA 469
            AGELI EAA+A
Sbjct: 412 QAGELIAEAALA 423

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score =  701 bits (1813), Expect = 0.0
 Identities = 160/427 (37%), Positives = 231/427 (54%), Gaps = 7/427 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVVV+G GPGGYVAAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H   
Sbjct: 5   DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFT 63

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
               + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + 
Sbjct: 64  KDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLL 122

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
           VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG 
Sbjct: 123 VDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVTYEEQILSRELPKSIIIAGAGA 181

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
           IG+E G V    G +VT+VEF    +P+ D ++ K+ ++  +K  +  +  TKV  +   
Sbjct: 182 IGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADG 241

Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
           G  V +T+     G    L+A+ VL + G  P   G GLDK GV       I V++   T
Sbjct: 242 GSQVTVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT 299

Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVG 402
           N+  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G
Sbjct: 300 NVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFG 359

Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
            TE+Q +  G +  V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL
Sbjct: 360 LTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAEL 419

Query: 463 IHEAAMA 469
           + E  +A
Sbjct: 420 LPELTLA 426

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score =  701 bits (1812), Expect = 0.0
 Identities = 167/465 (35%), Positives = 250/465 (53%), Gaps = 45/465 (9%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
            +++IGGGPGGYVAAI+A QLG+ T  +E + ALGGTCLN+GCIPSKAL+H +  +H+A 
Sbjct: 7   TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQAS 65

Query: 105 HS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
                +  G+  +S  +D+   +A KD  V  LT G+  L KK+ V  V G+ K +   +
Sbjct: 66  RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQ 125

Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
           V VD        ++ +++++ATGS    LP + +    ++SST ALA   +P+ LVV+G 
Sbjct: 126 VEVDG-----QRIQCEHLLLATGSSSVELPMLPLGG-PVISSTEALAPKALPQHLVVVGG 179

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
           GYIGLE+G  + +LG++V+VVE    I+P+ D E+      SL+K  +   L   V G +
Sbjct: 180 GYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE 239

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
              +G  L  +    G +  LEAD VLV+ GR P T G  L+ + ++ +    I ++ER 
Sbjct: 240 ---NGCLLAND--GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNG-AAIAIDERC 293

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVG 402
            T++  V+AIGDV   PMLAH+A   G    E +AGK    +   +  V +T PEV  VG
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVG 353

Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
           KT EQ  + G++  V +FPF AN RA +++   G V+++A ++   ILG   +     EL
Sbjct: 354 KTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSEL 413

Query: 463 I------------------------------HEAAMATHDKPIHI 477
                                           EAA+      +HI
Sbjct: 414 STAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 458

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score =  668 bits (1727), Expect = 0.0
 Identities = 111/436 (25%), Positives = 195/436 (44%), Gaps = 18/436 (4%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
           S + DVVVIG G  GY  A + A+        + +G LGG CL  GC+PSK +       
Sbjct: 2   SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTA 61

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVS-NLTRGIEGLFKKNKVTYVKGYGKFIS 159
                      +    + +D   +  +KD        +    + +   +T+ KGY K   
Sbjct: 62  WRL------TNIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKD 115

Query: 160 PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP--GITIDEKRIVSSTGALALNEVPKKL 217
           P+ V V T EG     + + +IIA+G++   L   G+              +  ++P+ +
Sbjct: 116 PTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLPQDM 175

Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFMLKT 276
           V+IGAGYIGLE+ S++  +G +  ++E     + ++ D +I       L   K+     +
Sbjct: 176 VIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL---KLNIKFNS 232

Query: 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI 336
            V  V    D     +     G K  +  + V+++AGR P     G  +IG+   K G I
Sbjct: 233 PVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPE-GAREIGLSISKTG-I 290

Query: 337 PVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDY---DKVPGVVY 393
            V+E   TNIP V+A GD        H A    +A    +      VDY     +P  +Y
Sbjct: 291 VVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIY 350

Query: 394 THPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVH 453
           T P ++ VG    + +++G+E    ++    +  A+     EG++K++ E+ + +++G  
Sbjct: 351 TIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAW 410

Query: 454 IMAPNAGELIHEAAMA 469
           ++  ++  LI+E  +A
Sbjct: 411 MIGVHSQYLINELGLA 426

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  661 bits (1709), Expect = 0.0
 Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 17/436 (3%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKT---TCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
            +V++GGGP GY AA+ AA    +T   T I+  G +GG  +   C+PSK  + S+ +  
Sbjct: 4   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRT 62

Query: 102 EAMHS-FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
           E   +      + F   ++ LP + A+     +  +  I        V  + G G+ I  
Sbjct: 63  ELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDS 122

Query: 161 S------EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 214
           +       +     +G  +  +   +++ATG+  + LP    D +RI++      L+ +P
Sbjct: 123 TPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDALP 182

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
             L+V+G+G  G E    +  LG  VTVV     ++P  D +     + S  ++ ++   
Sbjct: 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFK 242

Query: 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
             +   V  +G GV +T+      +   +E    L++ G  P T+GLGL+++G++  +  
Sbjct: 243 NARAASVTRTGAGVLVTMT-----DGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGN 297

Query: 335 RIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVY 393
            + V+    T   G+YA GD      LA  A   G   +    G+    +    V   V+
Sbjct: 298 YLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVF 357

Query: 394 THPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVH 453
           T PE+A+VG  +  +    V  R    P   N+RAK  +   G VKI   + T  ++G  
Sbjct: 358 TRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGV 417

Query: 454 IMAPNAGELIHEAAMA 469
           ++AP A ELI   A+A
Sbjct: 418 VVAPIASELILPIAVA 433

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  656 bits (1696), Expect = 0.0
 Identities = 136/431 (31%), Positives = 208/431 (48%), Gaps = 10/431 (2%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
                V VIG G     AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+ 
Sbjct: 2   EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIA 60

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG--IEGLFKKNKVTYVKGYGKFI 158
           H    S    G+  +   +D   ++AQ+   V  L        L     +T V G  +F 
Sbjct: 61  HLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFK 120

Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLV 218
               ++V   EGG  VV     ++ATG+     P   + E    +ST ALA + +P++L 
Sbjct: 121 DDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLA 180

Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
           VIG+  + LE+   +ARLGS+VTV+     +    D  I +    +   + ++ +  T+ 
Sbjct: 181 VIGSSVVALELAQAFARLGSKVTVLA-RNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA 239

Query: 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
             V        LT           L AD +LV+ GRTP T  L LD  GV  +  G I +
Sbjct: 240 SQVAHMDGEFVLT------TTHGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVI 293

Query: 339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEV 398
           ++   T+ P +YA GD    P   + A   G      + G    +D   +P VV+T P+V
Sbjct: 294 DQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQV 353

Query: 399 ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
           A+VG +E +    G+E            RA A  D  G +K++ E+ + +++GV  +AP 
Sbjct: 354 ATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPE 413

Query: 459 AGELIHEAAMA 469
           AGELI  AA+A
Sbjct: 414 AGELIQTAALA 424

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score =  650 bits (1680), Expect = 0.0
 Identities = 117/437 (26%), Positives = 200/437 (45%), Gaps = 23/437 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV +IG G  G  A   A +   K   IE  GA G TC  VGC+PSK L+ ++   + A 
Sbjct: 10  DVAIIGTGTAGMGAYRAAKKHTDKVVLIEG-GAYGTTCARVGCMPSKLLIAAADASYHAS 68

Query: 105 HSFASHGVKFSSVEVDLPAMMAQ----KDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
                 G++   + V+  A+M +    +D+ V  +   +E   +++K+   +G+ KF+  
Sbjct: 69  Q-TDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKI---RGFAKFLDE 124

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
             + VD     ++ V  K I+IATGS       +     R++++     LN++PK + V 
Sbjct: 125 HTLQVD----DHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVF 180

Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
           G G IGLE+G   +RLG  V V   +  +    D E+++  +++  ++   F  K +V+ 
Sbjct: 181 GPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVIS 239

Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
                D V++       G+KT      VL + GR      LGL+   +E DK      +E
Sbjct: 240 TIEKEDAVEVIYF-DKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDE 298

Query: 341 -RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK--HGHVDYDKVPGVVYTHPE 397
               T++  ++  GD      L H+A +DG                       VV+T P+
Sbjct: 299 LTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQ 358

Query: 398 VASVGKTEEQVKEL-----GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGV 452
           VASVG +  Q+++L        Y VG+  F    R++ +   +G++ + A++ + + LG 
Sbjct: 359 VASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGA 418

Query: 453 HIMAPNAGELIHEAAMA 469
            +  P A  + H  A A
Sbjct: 419 EMFGPAAEHIGHLLAWA 435

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  641 bits (1656), Expect = 0.0
 Identities = 98/452 (21%), Positives = 173/452 (38%), Gaps = 27/452 (5%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           +   E D + IGGG  G   +     +G +   +++   LGG+C +  C+P       + 
Sbjct: 39  NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAA 98

Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK---VTYVKGYG 155
               A      +     + +V     +    +A  N   GI     K +      +    
Sbjct: 99  ELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA 158

Query: 156 KFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV-SSTGALALNEVP 214
           K I    V          V K KN+I+A G+   +L    ++ K +   +T    L+  P
Sbjct: 159 KVIDNHTVEA-----AGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEP 213

Query: 215 -KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
              +VV+G     +E G  +   G    ++     +    D E R      +++Q M+ +
Sbjct: 214 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEII 273

Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
             + V  ++   +G    +       +  +E D V +  G  P +A L    +G++    
Sbjct: 274 SGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELA-KILGLDLGPK 332

Query: 334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVY 393
           G + VNE   T++P VYA+GD+I GPM   KA + G      + G+         P  ++
Sbjct: 333 GEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLH 392

Query: 394 THPEVASVGKTEEQVKELGVEYRVGKFPF----------------LANSRAKAIDDAEGI 437
           TH EV+ +G  EE+ +  G E    K P                 +  +  K      G 
Sbjct: 393 THYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGF 452

Query: 438 VKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
            KI+ + +T K+LG H +   A +      + 
Sbjct: 453 QKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVL 484

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  504 bits (1300), Expect = e-177
 Identities = 114/478 (23%), Positives = 210/478 (43%), Gaps = 66/478 (13%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D++VIGGG GG  AA +AA+   K   +EK   LGGTC+NVGC+P K + +++ ++   +
Sbjct: 4   DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHD-IL 61

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
            +   +G   +    +LP ++ ++DK +  L         K+KV   +G   F+S + + 
Sbjct: 62  ENSRHYGFD-TKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRIL 120

Query: 165 VD---------TIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEV 213
           +                 +++G+NI+IA G+      + GI    +  +SS     + E 
Sbjct: 121 IKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGI----ENTISSDEFFNIKE- 175

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
            KK+ ++G+GYI +E+ +V  RLG +  +      I+   D  +    +  ++K  +  +
Sbjct: 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIV 235

Query: 274 LKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
               VV +    D  + + L       +     D V+   GR+P T  L L+K+ VET+ 
Sbjct: 236 TFADVVEIKKVSDKNLSIHLS----DGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNN 291

Query: 333 MGRIPVNERFATNIPGVYAIGD----------------------------------VIPG 358
              I V+E   T++  +YA+GD                                  +   
Sbjct: 292 -NYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN 350

Query: 359 PMLAHKAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL----GV 413
             L   A   G    + L   K    +Y  +P V+++HP + ++G +EE   ++     V
Sbjct: 351 VQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENV 410

Query: 414 EYRVGKFPFL--ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
           +    KF  L  +    +     +  +K++   + + I G+HI+  NA E++   A+A
Sbjct: 411 KIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVA 468

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  448 bits (1154), Expect = e-155
 Identities = 123/449 (27%), Positives = 200/449 (44%), Gaps = 19/449 (4%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIP 89
           A      D++VIGGG GG   A +AAQLG K    +         +  LGGTC+NVGCIP
Sbjct: 1   AGGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIP 60

Query: 90  SKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV 148
            K +  ++      +     +G + +  V+ +   M       V +L  G     +  KV
Sbjct: 61  KKLMHQAAL-LGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKV 119

Query: 149 TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
            Y      F+    V      G  T++  ++I+IATG   +    +    +  ++S    
Sbjct: 120 KYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIF 179

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
            L E P K +V+GA Y+ LE       +G + TV+   +  +   D ++       +E  
Sbjct: 180 WLKESPGKTLVVGASYVALECAGFLTGIGLDTTVM-MRSIPLRGFDQQMSSLVTEHMESH 238

Query: 269 KMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
             +F+       +       +++T E  A G++     D VL + GR P T  L L+K G
Sbjct: 239 GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAG 298

Query: 328 VETD-KMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG-KHGHVD 384
           + T+ K  +I V+ + AT++P +YAIGDV  G P L   A + G    + L G     +D
Sbjct: 299 ISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMD 358

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI---DDAEGIVKIL 441
           Y  VP  V+T  E   VG +EE+   L  +  V  +          +   D ++  +K++
Sbjct: 359 YSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMV 418

Query: 442 AEKETD-KILGVHIMAPNAGELIHEAAMA 469
             +E    +LG+H + PNAGE+    A+ 
Sbjct: 419 CMREPPQLVLGLHFLGPNAGEVTQGFALG 447

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  444 bits (1144), Expect = e-152
 Identities = 131/482 (27%), Positives = 217/482 (45%), Gaps = 27/482 (5%)

Query: 12  YVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTC 71
           +V  + + +S     +  +  L      +  + D++VIGGG GG  A  +AA+ G KT  
Sbjct: 76  FVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAV 135

Query: 72  IE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG--VKFSSVEVDL 121
           ++            LGGTC+NVGCIP K +  +      A+      G  +  S +  + 
Sbjct: 136 LDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGL-LSHALEDAEHFGWSLDRSKISHNW 194

Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
             M+      + +L  G +   + N+VTY+   G+ ISP EV +       + + G  II
Sbjct: 195 STMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKII 254

Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
           +ATG      P I    +  ++S    +L   P K +VIGA Y+ LE     A LG +VT
Sbjct: 255 LATGERP-KYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVT 313

Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML--------KTKVVGVDLSGDGVKLTLE 293
           V+   + ++   D ++ ++    +E   +KF          + KVV  + +  G+ L   
Sbjct: 314 VM-VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKG 372

Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
               G+K   E + V+ + GR P  + +  + +GV+ DK GR+   +   T +  VYAIG
Sbjct: 373 HYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIG 432

Query: 354 DVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL 411
           D+  G P L   A + G      L AG     DY  V   V+T  E  + G +EE   E 
Sbjct: 433 DINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEK 492

Query: 412 GVEYRV----GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAA 467
             +  +      F  L  + A   D+   +  +  + +  ++LG+H++ PNAGE+    A
Sbjct: 493 YGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYA 552

Query: 468 MA 469
           +A
Sbjct: 553 VA 554

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  436 bits (1123), Expect = e-149
 Identities = 135/477 (28%), Positives = 230/477 (48%), Gaps = 27/477 (5%)

Query: 15  SRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE- 73
           S +  + S+G V + S          S + D+++IGGG GG  AA +AAQ G K   ++ 
Sbjct: 4   SHHHHHHSSGLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF 63

Query: 74  -------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDLPAMM 125
                   R  LGGTC+NVGCIP K +  ++    +A+    ++G K   +V+ D   M+
Sbjct: 64  VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAAL-LGQALQDSRNYGWKVEETVKHDWDRMI 122

Query: 126 AQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATG 185
                 + +L  G     ++ KV Y   YG+FI P  +     +G   +   +  +IATG
Sbjct: 123 EAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATG 182

Query: 186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEF 245
                  GI  D++  +SS    +L   P K +V+GA Y+ LE     A +G +VTV+  
Sbjct: 183 ERP-RYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-V 240

Query: 246 AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKT 301
            + ++   D ++  +    +E+  +KF+ +   + V+    G    +++  +     E  
Sbjct: 241 RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300

Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNIPGVYAIGDVIPG-P 359
             E + V+++ GR   T  +GL+ +GV+ + K G+IPV +   TN+P +YAIGD++    
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV 360

Query: 360 MLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE---- 414
            L   A + G    + L AG     DY+ VP  V+T  E  + G +EE+  E   E    
Sbjct: 361 ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIE 420

Query: 415 -YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAAMA 469
            Y    +P      ++  D+ +   KI+   K+ ++++G H++ PNAGE+    A A
Sbjct: 421 VYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAA 475

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  426 bits (1099), Expect = e-147
 Identities = 123/431 (28%), Positives = 203/431 (47%), Gaps = 20/431 (4%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D + IGGG GG  +  +AA  G K   IE +  LGGTC+NVGC+P K + H++ +     
Sbjct: 6   DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIH 64

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                +G   +  + +   ++A +   +  +    E +  KN V  +KG+ +F+    + 
Sbjct: 65  MYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLE 124

Query: 165 VDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
           V+        +   +I+IATG       +PG+    +  + S G  AL  +P+++ V+GA
Sbjct: 125 VN-----GETITADHILIATGGRPSHPDIPGV----EYGIDSDGFFALPALPERVAVVGA 175

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
           GYIG+E+G V   LG++  + E     +PS D  I +     +  +  +         V 
Sbjct: 176 GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVV 235

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
            + DG  LTLE   G        D ++ + GR P    + L+  GV+T++ G I V++  
Sbjct: 236 KNTDG-SLTLELEDG---RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ 291

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVAS 400
            TNI G+YA+GD      L   A   G    E L       H+DY  +P VV++HP + +
Sbjct: 292 NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGT 351

Query: 401 VGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
           VG TE Q +E     + +V K  F A   A         +K++     +KI+G+H +   
Sbjct: 352 VGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFG 411

Query: 459 AGELIHEAAMA 469
             E++   A+A
Sbjct: 412 MDEMLQGFAVA 422

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  428 bits (1102), Expect = e-147
 Identities = 124/443 (27%), Positives = 201/443 (45%), Gaps = 24/443 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIE---------KRGALGGTCLNVGCIPSKALLH 95
           D++VIGGG  G   A +A   G +  C++          +  +GGTC+NVGCIP K +  
Sbjct: 11  DLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQ 70

Query: 96  SSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
           +S    EA+H  A++G      ++ D   ++      + ++        +  KV Y+ G 
Sbjct: 71  ASL-LGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL 129

Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 214
           G F+    +      G  T+   +  +IA G      P I    +  ++S    +L+  P
Sbjct: 130 GSFVDSHTLLAKLKSGERTI-TAQTFVIAVGGRP-RYPDIPGAVEYGITSDDLFSLDREP 187

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
            K +V+GAGYIGLE       LG E TV+   + ++   D ++ +    S+E++ + F+ 
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAELVAASMEERGIPFLR 246

Query: 275 KTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
           KT  + V+   DG + +  +    GE++    D VL + GR      L L   GV   K 
Sbjct: 247 KTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK- 305

Query: 334 GRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGV 391
            +IPV+ + ATN+  +YA+GD+I G P L   A   G      L  G    +DY  V   
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365

Query: 392 VYTHPEVASVGKTEEQVKELGVEYRV----GKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           V+T  E A VG +EE   +      +    G +        +        +K +AE+  D
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQK-SVRYCYLKAVAERHGD 424

Query: 448 -KILGVHIMAPNAGELIHEAAMA 469
            ++ G+H + P AGE+I   A A
Sbjct: 425 QRVYGLHYIGPVAGEVIQGFAAA 447

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  418 bits (1077), Expect = e-143
 Identities = 125/445 (28%), Positives = 217/445 (48%), Gaps = 22/445 (4%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
           A A    D +VIGGG GG  +A +AA+LG +   +E    LGGTC+NVGC+P K + +++
Sbjct: 15  AGAVASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTA 73

Query: 98  HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
             + E MH  A +G      + +   +  ++D  VS L    +    K+ +  ++G+  F
Sbjct: 74  V-HSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAF 132

Query: 158 ISPSEVSVDTIEGGNTVVKGKNIIIATGS-----DVKSLPGITIDEKRIVSSTGALALNE 212
            S  +    TIE         +I+IATG          +PG        ++S G   L E
Sbjct: 133 TSDPKP---TIEVSGKKYTAPHILIATGGMPSTPHESQIPGA----SLGITSDGFFQLEE 185

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
           +P + V++GAGYI +EM  + + LGS+ +++     ++ S D  I       LE   ++ 
Sbjct: 186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 245

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEK----TILEADVVLVSAGRTPFTAGLGLDKIGV 328
           +  ++V  V  +  G+++++  A  G       I + D +L + GR P T  L L+K+G+
Sbjct: 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGI 305

Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE--FLAGKHGHVDYD 386
           +TD  G I V+E   TN+ G+YA+GDV    +L   A   G       F   +   +DY+
Sbjct: 306 QTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYN 365

Query: 387 KVPGVVYTHPEVASVGKTEEQVKELGVEY--RVGKFPFLANSRAKAIDDAEGIVKILAEK 444
            +P VV++HP + +VG TE++          +     F     A      + ++K++   
Sbjct: 366 NIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 425

Query: 445 ETDKILGVHIMAPNAGELIHEAAMA 469
           + +K++G+H+      E++   A+A
Sbjct: 426 KEEKVVGIHMQGLGCDEMLQGFAVA 450

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  416 bits (1072), Expect = e-142
 Identities = 122/443 (27%), Positives = 211/443 (47%), Gaps = 16/443 (3%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
           ++ +   D +VIGGG GG  +A +AA  G KT  +E +  LGGTC+NVGC+P K + ++S
Sbjct: 6   STNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYAS 64

Query: 98  HMYHEAMHS-----FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
            +     H+     + +  +    +  + P    ++D  V  L    +   +K KV  V 
Sbjct: 65  DLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVF 124

Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
           G+ +F     V V   +    V    +I++ATG        I   E     S G   L E
Sbjct: 125 GWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT-DSDGFFRLEE 183

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
            PKK+VV+GAGYIG+E+  V+  LGSE  +V     ++   D  I+        K+ +  
Sbjct: 184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINV 243

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
              +K+V V+ + +  KL +         I + D ++ + GR     G+G + +G++ + 
Sbjct: 244 HKLSKIVKVEKNVETDKLKIHMNDSKS--IDDVDELIWTIGRKSHL-GMGSENVGIKLNS 300

Query: 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG----KHGHVDYDKV 388
             +I  +E   TN+P +Y++GDV+    L   A   G      L G    ++  +DY+ V
Sbjct: 301 HDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENV 360

Query: 389 PGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKET 446
           P V+++HPE  S+G +E++  E       +V    F A   A   + +    KI+     
Sbjct: 361 PSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPN 420

Query: 447 DKILGVHIMAPNAGELIHEAAMA 469
           +K++G+HI+  ++ E++    +A
Sbjct: 421 EKVVGLHIVGDSSAEILQGFGVA 443

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  416 bits (1071), Expect = e-142
 Identities = 104/426 (24%), Positives = 199/426 (46%), Gaps = 12/426 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+ VIG G GG  AA  A  LG +    E+   +GGTC+  GC+P K   ++S  Y +  
Sbjct: 28  DLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQ-YAQEF 85

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                 G K++    +   ++A K+K +S L        + + V   +    F+    + 
Sbjct: 86  SKSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLE 145

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
           +         +  + I+IATG+ + S   I       ++S     L ++PK +V++G GY
Sbjct: 146 L---SVTGERISAEKILIATGAKIVSNSAIK-GSDLCLTSNEIFDLEKLPKSIVIVGGGY 201

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
           IG+E  +++  LG + T++     I+ + D ++R+    ++  + +  + +  V  V  +
Sbjct: 202 IGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST 261

Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
            +   + L          + AD V+++ GR P T GLGL++ GV+ ++ G + V+E+  T
Sbjct: 262 ENCYNVVLT-----NGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT 316

Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGK 403
           N+  ++A+GDV     L   A  D +  V+          DYD +   V++ PE+ +VG 
Sbjct: 317 NVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGL 376

Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
           +EE          + +  F       +    +  +K++ + E+  ++G H++  NAGE+ 
Sbjct: 377 SEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIA 436

Query: 464 HEAAMA 469
               ++
Sbjct: 437 QLIGIS 442

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  409 bits (1053), Expect = e-140
 Identities = 107/426 (25%), Positives = 195/426 (45%), Gaps = 11/426 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D+ VIGGG GG  +   AA LG K    E+    GGTC+  GC+P K  +++S  + E  
Sbjct: 7   DLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQ-FAEHF 64

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
              A  G        D   ++A K++ ++ L               +    +   P+ V 
Sbjct: 65  EDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVK 124

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
           +         V  + I+IA G        +   E   ++S  A  L  +P+ +++ G GY
Sbjct: 125 L---LASGKTVTAERIVIAVGGHPSPHDALPGHE-LCITSNEAFDLPALPESILIAGGGY 180

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
           I +E  +++  LG + T++    +I+   D ++R+    ++E++ ++ + +  +  V   
Sbjct: 181 IAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSAD 240

Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
            DG ++        +   + AD V+++ GR P T GLGL+  GV T+++G I V+    T
Sbjct: 241 ADGRRVATT----MKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT 296

Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGK 403
           + PG+YA+GDV     L   A  + +  +E          D+D +   V++ PE+ +VG 
Sbjct: 297 STPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGI 356

Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
           TEE+      E  V +  F       +    + I+K++      K++G HI+  +AGE+ 
Sbjct: 357 TEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMA 416

Query: 464 HEAAMA 469
               ++
Sbjct: 417 QLLGIS 422

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  404 bits (1040), Expect = e-137
 Identities = 131/446 (29%), Positives = 207/446 (46%), Gaps = 28/446 (6%)

Query: 45  DVVVIGGGPGGYVAAIKAAQL-GLKTTCIE--------KRGALGGTCLNVGCIPSKALLH 95
           D+VVIG G GG  A   AA L   +   I+           ALGGTC+NVGC+P K ++ 
Sbjct: 5   DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVT 64

Query: 96  SSHMYHEAMHSFASHG--VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVK 152
            ++ Y + +   A  G  +   SV  +  A++A K+KAVS +    EG+F   + +T+ +
Sbjct: 65  GAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQ 123

Query: 153 GYGKFISPSEVSVDTIEGGNT----VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
           G+G       V V      N+     +  + I++ATGS      GI  D+  I +S  A 
Sbjct: 124 GFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS-WPQHLGIEGDDLCI-TSNEAF 181

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQRSL 265
            L+E PK+ + +G GYI +E   ++      G +V +      I+   D E+RKQ    L
Sbjct: 182 YLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL 241

Query: 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDK 325
               +          V  + DG    +   +G E    + DVV+++ GR P +  L L+K
Sbjct: 242 RANGINVRTHENPAKVTKNADG-TRHVVFESGAE---ADYDVVMLAIGRVPRSQTLQLEK 297

Query: 326 IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVD 384
            GVE  K G I V+    TN+  +YAIGDV    ML   A  +G A V+ + A K    D
Sbjct: 298 AGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATD 357

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAE 443
           + KV   V++ P +   G  EE   +   +  V +  F       +    +   V+I+  
Sbjct: 358 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTN 417

Query: 444 KETDKILGVHIMAPNAGELIHEAAMA 469
               ++LGVH++  ++ E+I   A+ 
Sbjct: 418 HADGEVLGVHMLGDSSPEIIQSVAIC 443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  400 bits (1030), Expect = e-136
 Identities = 124/448 (27%), Positives = 213/448 (47%), Gaps = 32/448 (7%)

Query: 45  DVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR--------GALGGTCLNVGCIPSKALLH 95
           D+VVIG G GG  A   AA L G +   ++ +         ALGGTC+NVGC+P K ++ 
Sbjct: 9   DLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVT 68

Query: 96  SSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVK 152
            +  Y + +   A  G +F  SSV+ +   ++A K++AV ++ +  EG+F   + + +  
Sbjct: 69  GAQ-YMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFL 127

Query: 153 GYGKFISPSEVSVDTIE----GGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTG 206
           G+G   S + V V             ++  +I++ATGS   + ++PGI    +  +SS  
Sbjct: 128 GWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI----EHCISSNE 183

Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQR 263
           A  L E P++++ +G G+I +E   ++      G +VT+      I+   D  IR++  +
Sbjct: 184 AFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTK 243

Query: 264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
            L    ++ M       V L+ DG    +   +G     L+ DVV+++ GR P T  L L
Sbjct: 244 QLTANGIEIMTNENPAKVSLNTDG-SKHVTFESG---KTLDVDVVMMAIGRIPRTNDLQL 299

Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGH 382
             +GV+    G + V+E   TN+P +YAIGD+    ML   A  +G A V+ +   K   
Sbjct: 300 GNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRK 359

Query: 383 VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG-IVKIL 441
            D+ +V   V++ P + + G  EE   +   +  V    F       +    +  + KI+
Sbjct: 360 TDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIV 419

Query: 442 AEKETDKILGVHIMAPNAGELIHEAAMA 469
                  +LGVH++   A E+I    + 
Sbjct: 420 TNHSDGTVLGVHLLGDGAPEIIQAVGVC 447

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  394 bits (1015), Expect = e-134
 Identities = 129/430 (30%), Positives = 211/430 (49%), Gaps = 20/430 (4%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D++ IGGG GG   A KAA  G +   IE +  LGGTC+NVGC+P K + ++SH   EA+
Sbjct: 6   DLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASH-LAEAV 63

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                 GV+ S   +D P ++A +D+ +  +    +G  ++  +T V G+ +F+    + 
Sbjct: 64  RDAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIE 123

Query: 165 VDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
           V+        +   +I+IATG    V  LPG     +  ++S G  AL + PK++ +IGA
Sbjct: 124 VE-----GQRLSADHIVIATGGRPIVPRLPGA----ELGITSDGFFALQQQPKRVAIIGA 174

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
           GYIG+E+  +    GSEVTVV     ++   D  +      ++  Q ++  L+  V  ++
Sbjct: 175 GYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALE 234

Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
               G  L  +        +   D V+ + GR P T  LGL+  G+E    G +P +   
Sbjct: 235 RDAQGTTLVAQ----DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ 290

Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVAS 400
            TN+PGVYA+GD+     L   A   G    E L        +DYD +P VV+ HP ++ 
Sbjct: 291 NTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSK 350

Query: 401 VGKTEEQ-VKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
           VG +E +  + LG    V +  F     A      +  +K++      +++GVH++   A
Sbjct: 351 VGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGA 410

Query: 460 GELIHEAAMA 469
            E++   A+A
Sbjct: 411 DEMLQGFAVA 420

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  139 bits (352), Expect = 2e-36
 Identities = 56/314 (17%), Positives = 107/314 (34%), Gaps = 40/314 (12%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
           I+ TGS     P   ID  R+        A  L E     K + +IG+GYIG E+   ++
Sbjct: 110 IMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYS 169

Query: 235 RLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
                V +++    ++    D E      +  E   +  +L +KV   +   D +     
Sbjct: 170 NQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL 229

Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
                +   +++D+ ++  G  P T    L K  V     G I  +E   ++   ++A G
Sbjct: 230 -----DGKEIKSDIAILCIGFRPNTE---LLKGKVAMLDNGAIITDEYMHSSNRDIFAAG 281

Query: 354 DVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HPE 397
           D              + LA  A   G      L          K  G   +         
Sbjct: 282 DSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK-----VKDMGTQSSSGLKLYGRT 336

Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIMA 456
             S G      K   ++          N R + +   + + + ++ + +T  ILG  + +
Sbjct: 337 YVSTGINTALAKANNLKVSEVIIA--DNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSS 394

Query: 457 P-NAGELIHEAAMA 469
             +  +  +  ++ 
Sbjct: 395 MHDVSQSANVLSVC 408

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  140 bits (355), Expect = 2e-36
 Identities = 75/320 (23%), Positives = 134/320 (41%), Gaps = 50/320 (15%)

Query: 181 IIATGSD--------VKSLPGI----TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGL 227
           I++ G+         ++    +     + D  RI     A    + P+   VIG G+IG+
Sbjct: 145 ILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIK----AYIDEKKPRHATVIGGGFIGV 200

Query: 228 EMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG 287
           EM       G EVT+VE A  ++P +D E+       ++   ++ + +  V  ++ +G  
Sbjct: 201 EMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV 260

Query: 288 VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP 347
           V+L          ++++ D+++++ G  P ++ L     G+     G I VNE+F T+ P
Sbjct: 261 VRLK-------SGSVIQTDMLILAIGVQPESS-L-AKGAGLALGVRGTIKVNEKFQTSDP 311

Query: 348 GVYAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT--- 394
            +YAIGD I            + LA  A   G    + + G           G + T   
Sbjct: 312 HIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGH----TDSLYKGTLGTSVA 367

Query: 395 ---HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKIL 450
                 VA+ G  E+ +K L + Y V      ANS A    +A  + +K++  K++ KI 
Sbjct: 368 KVFDLTVATTGLNEKILKRLNIPYEVVHVQ--ANSHAGYYPNATPVLIKLIFNKDSGKIY 425

Query: 451 GVHIMAP-NAGELIHEAAMA 469
           G   +      + +   A A
Sbjct: 426 GAQTLGRDGVDKRMDVIATA 445

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  138 bits (349), Expect = 6e-36
 Identities = 69/315 (21%), Positives = 122/315 (38%), Gaps = 41/315 (13%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMGSV 232
           +IATG           D + +        A  + +       + + +IG G IGLEM   
Sbjct: 145 LIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAET 204

Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
           +  LG +V ++E    I    DG++ +   +  +K  ++ +    V     +     +  
Sbjct: 205 FVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET 264

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
           +    G     +AD+VLVS G  P T    L+   + T+  G I VN    TN+  VYA 
Sbjct: 265 D---KGT---YKADLVLVSVGVKPNTD-F-LEGTNIRTNHKGAIEVNAYMQTNVQDVYAA 316

Query: 353 GDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HP 396
           GD              + +   A + G      +  K          G + T      + 
Sbjct: 317 GDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKR-----RAFKGTLGTGIIKFMNL 371

Query: 397 EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIM 455
            +A  G  E++ K L + Y+  K    + + A    +A+ + +K+L   +T ++LG  ++
Sbjct: 372 TLARTGLNEKEAKGLHIPYKTVKVD--STNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVI 429

Query: 456 AP-NAGELIHEAAMA 469
                 + I   AMA
Sbjct: 430 GEEGVDKRIDVIAMA 444

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  135 bits (342), Expect = 5e-35
 Identities = 76/319 (23%), Positives = 123/319 (38%), Gaps = 44/319 (13%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMG-S 231
           ++A GS     P   +D   +   T    A  +          K V++G G+IGLEM  S
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVS 177

Query: 232 VWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
           +    G + TVVE A  I+P      + +  +  LEK  +      KVV ++     V  
Sbjct: 178 LADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVAR 237

Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350
            +      +K  L+AD+V+++AG +P T  L     G+E D  G I V+ R  T+ P ++
Sbjct: 238 VIT-----DKRTLDADLVILAAGVSPNTQ-L-ARDAGLELDPRGAIIVDTRMRTSDPDIF 290

Query: 351 AIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------ 394
           A GD +         PG   L   A   G      LA           PG V +      
Sbjct: 291 AGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD-----ATFPGAVGSWAVKLF 345

Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVH 453
               +  G T E     G +            RA    +   + ++++ ++ T ++LG+ 
Sbjct: 346 EGSASGAGLTVEGALREGYDAVNVHVE--QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQ 403

Query: 454 IMAPNAGEL---IHEAAMA 469
             +     L   I+  A  
Sbjct: 404 GFSTLGDALTARINAVATM 422

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  136 bits (345), Expect = 6e-35
 Identities = 66/329 (20%), Positives = 120/329 (36%), Gaps = 49/329 (14%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMGSV 232
           +++ G+     P   +D     S         + +       +   V+G G+IGLEM   
Sbjct: 110 LLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMES 169

Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
              LG + T++E A  ++  +D E+     +++  Q +   L T +  V         + 
Sbjct: 170 LHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASD 229

Query: 293 EPAAGGE--------------KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
                                  +LE D+++++ G  P T  L     G+   ++G I V
Sbjct: 230 AAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQ-L-ARDAGLAIGELGGIKV 287

Query: 339 NERFATNIPGVYAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKV 388
           N    T+ P +YA+GD +            + LA  A   G    + + G+      ++ 
Sbjct: 288 NAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-----ERY 342

Query: 389 PGVVYT------HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKIL 441
            G   T         V + GK E+Q+K+ G+ +          S A     AE +  K+L
Sbjct: 343 QGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVH--TASHASYYPGAEVVSFKLL 400

Query: 442 AEKETDKILGVHIMAP-NAGELIHEAAMA 469
            +     I G   +      + I   A+A
Sbjct: 401 FDPVKGTIFGAQAVGKDGIDKRIDVMAVA 429

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  133 bits (338), Expect = 9e-35
 Identities = 60/315 (19%), Positives = 123/315 (39%), Gaps = 48/315 (15%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMGSV 232
           I++ G+      G   +     +        A+++        K++V+GAGY+ LE+   
Sbjct: 110 ILSPGASAN-SLGF--ESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 166

Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
               G   T++  +  I   MD ++ +     L+K+++ + L  ++  ++  G+ +    
Sbjct: 167 LYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAIN--GNEITFK- 223

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
                    +   D+++   G  P +    ++   ++ D+ G IPVN++F TN+P +YAI
Sbjct: 224 ------SGKVEHYDMIIEGVGTHPNSK-F-IESSNIKLDRKGFIPVNDKFETNVPNIYAI 275

Query: 353 GDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HP 396
           GD+          P  + LA  A        E +AG     D  +  G +          
Sbjct: 276 GDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN----DTIEFKGFLGNNIVKFFDY 331

Query: 397 EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIM 455
             ASVG    ++K+   +           + A        + +++  +    +IL    +
Sbjct: 332 TFASVGVKPNELKQFDYKMVE----VTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAV 387

Query: 456 AP-NAGELIHEAAMA 469
               A + I   +MA
Sbjct: 388 GKEGADKRIDVLSMA 402

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  132 bits (336), Expect = 2e-34
 Identities = 74/318 (23%), Positives = 123/318 (38%), Gaps = 47/318 (14%)

Query: 181 IIATGSD--VKSLPGITIDEKRIVSSTG--------ALALNEVPKKLVVIGAGYIGLEMG 230
           II+ G+      +PG   D   I    G           ++     +VVIG+GYIG+E  
Sbjct: 108 IISPGAVPFELDIPGK--DLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAA 165

Query: 231 SVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK 289
             +A+ G +VTV++     +   +D E        +E   +       V   +  GDG +
Sbjct: 166 EAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDG-R 222

Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
           +             +AD+V+V+ G  P TA     K  +E    G I  +E   T+ P V
Sbjct: 223 VQKVVTDKNA---YDADLVVVAVGVRPNTA---WLKGTLELHPNGLIKTDEYMRTSEPDV 276

Query: 350 YAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT----- 394
           +A+GD              + LA  A + G   V+ L            PGV  +     
Sbjct: 277 FAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV-----KPFPGVQGSSGLAV 331

Query: 395 -HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGV 452
              + AS G  E   ++LG E +        +       D +    K++ + ET +ILG 
Sbjct: 332 FDYKFASTGINEVMAQKLGKETKAVTVV--EDYLMDFNPDKQKAWFKLVYDPETTQILGA 389

Query: 453 HIMAP-NAGELIHEAAMA 469
            +M+  +    I+  ++A
Sbjct: 390 QLMSKADLTANINAISLA 407

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  132 bits (334), Expect = 4e-34
 Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 43/314 (13%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
           I+ATG+   S        ++++       ALA   +    + + VIGAG IG+E      
Sbjct: 108 ILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLV 167

Query: 235 RLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
           ++   V V E   +++P   D E+  + Q+SLEKQ + F  +  V+G++ + +G+ L   
Sbjct: 168 KMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLET- 226

Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
                 +  +  D  + +    P  A        ++ +    I V+    T++P V+AIG
Sbjct: 227 -----SEQEISCDSGIFALNLHPQLA---YLDKKIQRNLDQTIAVDAYLQTSVPNVFAIG 278

Query: 354 DVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HPE 397
           D I              L + A   G+     L  K       +  G + T         
Sbjct: 279 DCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT-----HRFIGSLRTMGTKVGDYY 333

Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIMA 456
           +AS G TE +                    A  +     I  K++ +K T ++LG  + +
Sbjct: 334 LASTGLTETEGLFFPQTLASIIV----RQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCS 389

Query: 457 P-NAGELIHEAAMA 469
             N  E I+  A++
Sbjct: 390 KNNCLEKINTLALS 403

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  131 bits (331), Expect = 1e-33
 Identities = 71/315 (22%), Positives = 129/315 (40%), Gaps = 42/315 (13%)

Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG--------ALALNEVPKKLVVIGAGYIGLEMGSV 232
           + A G+  +      ++ K + ++                  + +V+IG GYIG+EM   
Sbjct: 107 VFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEA 166

Query: 233 WARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291
           +A  G  VT++     ++  S D E+    +  L+K  +   L+   + ++      K+ 
Sbjct: 167 FAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEERVEKVV 225

Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351
            +    GE    +A++V+++ G  P    L   ++GV   + G I  NE+  T++  VYA
Sbjct: 226 TD---AGE---YKAELVILATGIKPNIE-L-AKQLGVRIGETGAIWTNEKMQTSVENVYA 277

Query: 352 IGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------H 395
            GDV             + LA    + G      +AGK         PGV+ T       
Sbjct: 278 AGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE-----LHFPGVLGTAVTKFMD 332

Query: 396 PEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHI 454
            E+   G TE +  + G + R       A++R         I +K + + ET+++LGV +
Sbjct: 333 VEIGKTGLTEMEALKEGYDVRTAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQV 390

Query: 455 MAPNAGELIHEAAMA 469
           +  +    I  AA  
Sbjct: 391 VGSDILPRIDTAAAM 405

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  126 bits (320), Expect = 5e-32
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 36/276 (13%)

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272
            K++ V+GAGYIG+E+   + R G EV +++     +    D ++     +++E+  ++ 
Sbjct: 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQL 253

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
                V  V   G+G K+        E    + D+V+++ G  P T    L    ++  +
Sbjct: 254 AFGETVKEVA--GNG-KVEKIITDKNE---YDVDMVILAVGFRPNTT---LGNGKIDLFR 304

Query: 333 MGRIPVNERFATNIPGVYAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGH 382
            G   VN+R  T+IPGVYAIGD              + LA  A   G+       G    
Sbjct: 305 NGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD-- 362

Query: 383 VDYDKVPGVVYT------HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI-DDAE 435
               +  GV  +         + S G T E+ K LG +  V ++    N + + I     
Sbjct: 363 ---LEGIGVQGSNGISIYGLHMVSTGLTLEKAKRLGFDAAVTEYT--DNQKPEFIEHGNF 417

Query: 436 GI-VKILAEKETDKILGVHIMAP-NAGELIHEAAMA 469
            + +KI+ +K++ +ILG  + A  +    IH  ++A
Sbjct: 418 PVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLA 453

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score =  106 bits (267), Expect = 9e-26
 Identities = 74/325 (22%), Positives = 120/325 (36%), Gaps = 67/325 (20%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVV++G G  G+ AA+ AA+ G     ++K    GG       +             E  
Sbjct: 18  DVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPLV-------------ENY 63

Query: 105 HSFAS-HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
             F S  G + +                            +  +V  +K           
Sbjct: 64  LGFKSIVGSELAK------LFADHAANY------AKI--REGVEVRSIKKTQGGF----- 104

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GALALNEV 213
               IE  +     K +II TG+  K L   G    E        S  ST  G L     
Sbjct: 105 ---DIETNDDTYHAKYVIITTGTTHKHLGVKG----ESEYFGKGTSYCSTCDGYLFKG-- 155

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR--KQFQRSLEKQKMK 271
            K++V IG G  G       +     VT++E+          +      + + ++K+ + 
Sbjct: 156 -KRVVTIGGGNSGAIAAISMSEYVKNVTIIEY--------MPKYMCENAYVQEIKKRNIP 206

Query: 272 FMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
           +++  +V  +   G  V  +  +    GE+ ++E D V +  G  P T+ L     GV+ 
Sbjct: 207 YIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLK--DSGVKL 264

Query: 331 DKMGRIPVNERFATNIPGVYAIGDV 355
           D+ G I V+ R  T++PGVYA GDV
Sbjct: 265 DERGYIVVDSRQRTSVPGVYAAGDV 289

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score =  104 bits (261), Expect = 4e-24
 Identities = 74/328 (22%), Positives = 129/328 (39%), Gaps = 57/328 (17%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           +  D  DV+++G GP G  AA+ +A+ G++T  + +R   GG  L+   I          
Sbjct: 208 NKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDI---------- 255

Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
              E   S           + +   +       VS+    +      +K+      G   
Sbjct: 256 ---ENYISVP---------KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLH 303

Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GAL 208
              ++          V+K ++IIIATG+  +++  PG    E +     V+      G L
Sbjct: 304 ---QIETA----SGAVLKARSIIIATGAKWRNMNVPG----EDQYRTKGVTYCPHCDGPL 352

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
                 K++ VIG G  G+E     A +   VT++EFA    P M  +   Q  +    +
Sbjct: 353 FKG---KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA----PEMKADQVLQ-DKVRSLK 404

Query: 269 KMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
            +  +L  +   V   G  V  L       G+   +    + V  G  P T  L   +  
Sbjct: 405 NVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL---EGA 461

Query: 328 VETDKMGRIPVNERFATNIPGVYAIGDV 355
           +E ++MG I ++ +  T++ GV+A GD 
Sbjct: 462 LERNRMGEIIIDAKCETSVKGVFAAGDC 489

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  101 bits (255), Expect = 7e-24
 Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 51/263 (19%)

Query: 181 IIATGSDV-------KSLPGI----TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEM 229
           ++A G++         +   +     +++        A       ++++++GAG IG E 
Sbjct: 106 VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGK-----RRVLLLGAGLIGCEF 160

Query: 230 GSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV 288
            +  +  G ++ VV     ++P  +     K  Q  LE   ++F L   +  +  +G+G+
Sbjct: 161 ANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGL 220

Query: 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFA 343
           +  L   + G   ++  D+V+ + G  P T     AGL +++ G        I V+    
Sbjct: 221 EAHL---SDG--EVIPCDLVVSAVGLRPRTELAFAAGLAVNR-G--------IVVDRSLR 266

Query: 344 TNIPGVYAIGDV--IPGPMLAHKA--EEDGVACVEFLAGKHGHVDYD------KVPGVVY 393
           T+   +YA+GD   + G  L +         A  + LAG    V Y       K P    
Sbjct: 267 TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPAC-- 324

Query: 394 THPEVASVGKTEEQVKELGVEYR 416
               +           +  VE  
Sbjct: 325 ---PLVVSPPPRGMDGQWLVEGS 344

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 99.9 bits (250), Expect = 1e-23
 Identities = 73/325 (22%), Positives = 126/325 (38%), Gaps = 63/325 (19%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV+++G GP G  AAI +A+ G++T  + +R   GG  L+   I             E  
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDI-------------ENY 47

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
            S           + +   +       V      +      +K+      G      ++ 
Sbjct: 48  ISVP---------KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGG---LHQIE 95

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GALALNEVP 214
                    V+K ++II+ATG+  +++  PG    E +     V+      G L      
Sbjct: 96  TA----SGAVLKARSIIVATGAKWRNMNVPG----EDQYRTKGVTYCPHCDGPLFKG--- 144

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR--KQFQ-RSLEKQKMK 271
           K++ VIG G  G+E     A +   VT++EF          E++  +  Q +    + + 
Sbjct: 145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF--------APEMKADQVLQDKLRSLKNVD 196

Query: 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
            +L  +   V   G  V  L       G+   +E   + V  G  P T  L   +  VE 
Sbjct: 197 IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL---EGAVER 253

Query: 331 DKMGRIPVNERFATNIPGVYAIGDV 355
           ++MG I ++ +  TN+ GV+A GD 
Sbjct: 254 NRMGEIIIDAKCETNVKGVFAAGDC 278

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 99.6 bits (249), Expect = 2e-23
 Identities = 69/337 (20%), Positives = 117/337 (34%), Gaps = 71/337 (21%)

Query: 40  ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
           A+D  DV+++G GP G  A       GL    ++     GG                + +
Sbjct: 2   AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL--------------TAL 47

Query: 100 YHEAMHSFASHGVKFSSVEVDLPAMMAQKDKA-VSNLTRGIEGLFK-----KNKVTYV-K 152
           Y E              +  D+        K  V  L   +   F        +   + +
Sbjct: 48  YPEKY------------IY-DVAGFPKVYAKDLVKGLVEQVA-PFNPVYSLGERAETLER 93

Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-----SLPGITIDEKR----IVS 203
               F       V T +G       K +IIA G           PG    E R     V 
Sbjct: 94  EGDLFK------VTTSQG--NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVK 145

Query: 204 STGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRK 259
           S          K+++++G G   ++           +T++    +F A           K
Sbjct: 146 SKAEFQ----GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH------EASVK 195

Query: 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319
           +  ++ E+ +++ +   ++  V+         +      E+  LE D VL+ AG   +  
Sbjct: 196 ELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAG---YIT 252

Query: 320 GLG-LDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
            LG L   G+  +K  +I V+   AT+IPGVYA GD+
Sbjct: 253 KLGPLANWGLALEK-NKIKVDTTMATSIPGVYACGDI 288

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 99.6 bits (249), Expect = 4e-23
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 60/264 (22%)

Query: 181 IIATGSD--VKSLPGI-------TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
           ++ATG+      + G        TI D  RI          E   + ++IG G+IGLE+ 
Sbjct: 106 VLATGARAREPQIKGKEYLLTLRTIFDADRI------KESIENSGEAIIIGGGFIGLELA 159

Query: 231 SVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
              A  G  V ++   A  +  +D E+    +  LE+  +KF L ++++  +   +GV  
Sbjct: 160 GNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEAN--EEGVL- 215

Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATN 345
                       +E  V + + G  P       +G+   + G        I +++ F T+
Sbjct: 216 -----TNSGF--IEGKVKICAIGIVPNVDLARRSGIHTGR-G--------ILIDDNFRTS 259

Query: 346 IPGVYAIGDVI--PGPM--LAHKAEEDGVACVEFLAGKHGHVDYD--------KVPGVVY 393
              VYAIGD     G +   A  A E      + L G      Y+        K   +  
Sbjct: 260 AKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG--EPRRYNFKFRSTVFKFGKL-- 315

Query: 394 THPEVASVGKTEEQVKELGVEYRV 417
              ++A +G T+ + K +    +V
Sbjct: 316 ---QIAIIGNTKGEGKWIEDNTKV 336

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 74/393 (18%), Positives = 119/393 (30%), Gaps = 79/393 (20%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIP----- 89
             A      ++IGGG   + AA            I  R       + V     +P     
Sbjct: 6   DKAPSHVPFLLIGGGTAAFAAARS----------IRARDPGARVLI-VSEDPELPYMRPP 54

Query: 90  -SKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV 148
            SK L  S          F     K  S+    P+              G+  +    KV
Sbjct: 55  LSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVA-VLTGKKV 113

Query: 149 TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTG-- 206
                    +   +  V  +  G+ +   K  +IATG   +SL  I      + S T   
Sbjct: 114 VQ-------LDVRDNMV-KLNDGSQITYEK-CLIATGGTPRSLSAIDRAGAEVKSRTTLF 164

Query: 207 -----ALALNEV---PKKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFA----ADIV 250
                  +L ++    K + +IG G++G E+     R    LG+EV  +         I+
Sbjct: 165 RKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKIL 224

Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
           P     +       + ++ +K M    V  V +S   + + L     G K  +E D ++ 
Sbjct: 225 PE---YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKL---KDGRK--VETDHIVA 276

Query: 311 SAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV--IPGPMLAH 363
           + G  P        GL +D         G   VN         ++  GD        L  
Sbjct: 277 AVGLEPNVELAKTGGLEID------SDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGR 329

Query: 364 K-------AEEDGVACVEFLAGKHGHVDYDKVP 389
           +       A   G    E + G      Y    
Sbjct: 330 RRVEHHDHAVVSGRLAGENMTGA--AKPYWHQS 360

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 69/345 (20%)

Query: 32  SLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC--------- 82
            +        D  D+ +IGGGP G  AA +     +    IE    LGG           
Sbjct: 3   DIHNPATDHHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHI 62

Query: 83  LNVGCIPS-KALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEG 141
            +V   P   A+     ++ +A         +++  +V L       ++ V+  T+  +G
Sbjct: 63  YDVAGFPEVPAIDLVESLWAQAE--------RYN-PDVVL-------NETVTKYTKLDDG 106

Query: 142 LFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD------VKSLPGIT 195
            F+                      T  G   V + + ++IA G        +  L  I 
Sbjct: 107 TFE--------------------TRTNTG--NVYRSRAVLIAAGLGAFEPRKLPQLGNID 144

Query: 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVP 251
                 V        +   K++V++G G   L+      +  + VT+V    EF      
Sbjct: 145 HLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---- 200

Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
              G+   + +R+     +   L+T+V  ++ S   +      ++ G K  +EAD +L+ 
Sbjct: 201 --HGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLIL 258

Query: 312 AGRTPFTAGLG-LDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
            G   F + LG L +  +E  +   + V+    T++ G+YA GD+
Sbjct: 259 IG---FKSNLGPLARWDLELYE-NALVVDSHMKTSVDGLYAAGDI 299

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 46/337 (13%), Positives = 87/337 (25%), Gaps = 82/337 (24%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V+++G GP G  AA    + G      +    +GG    V  +P          Y E   
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQ- 450

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
                  K    ++ L                                         ++ 
Sbjct: 451 -ITKLLKKNKESQLALGQ-------------------------------------KPMTA 472

Query: 166 DTIEGGNTVVKGKNIIIATGS----------DVKSLPGITIDEKRIVSSTGALA-LNEVP 214
           D +           +IIATG+              +PG        ++    +    ++ 
Sbjct: 473 DDVLQYGA----DKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIG 528

Query: 215 KKLVVIGAG--YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
           K++V++ A   ++   +    A  G EVT+V                   R L +  ++ 
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEE 588

Query: 273 MLKTKVVGVDLSGDGVKLT--------------LEPAAGGEKTILEADVVLVSAGRTPFT 318
           +       ++     +                     A      +E D +++  GR    
Sbjct: 589 LGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648

Query: 319 AGL-GLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
                L     E  +                +Y IGD
Sbjct: 649 TLWNELKARESEWAENDIKG-----------IYLIGD 674

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 92.7 bits (231), Expect = 3e-20
 Identities = 67/341 (19%), Positives = 102/341 (29%), Gaps = 88/341 (25%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           V+V+G GP G  AA      G      E    LGG       +P  +       Y EA+ 
Sbjct: 394 VLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAV- 452

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
                                               L +   V   +        S ++ 
Sbjct: 453 ------------------------------------LAELPNVEIYRE-------SPMTG 469

Query: 166 DTIEGGNTVVKGKNIIIATGS----------DVKSLPGITIDEKRIVSSTGALALN-EVP 214
           D I         +++I ATG+             +LP    +  +++      A      
Sbjct: 470 DDIVEFG----FEHVITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDG 523

Query: 215 KKLVVIGAG--YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF-QRSLEKQKMK 271
           KK+VV      Y+G  +  + A+ G EV++V   A +    +        QR L +  + 
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVA 583

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA---GLGLDKIGV 328
            +    VV V   G    +T+       +  LE D V++   R P       L       
Sbjct: 584 RVTDHAVVAVGAGG----VTVRDTYASIERELECDAVVMVTARLPREELYLDL------- 632

Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG 369
                    V  R A  I  V  IGD    P     A   G
Sbjct: 633 ---------VARRDAGEIASVRGIGDAW-APGTIAAAVWSG 663

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 91.1 bits (227), Expect = 5e-20
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 28/189 (14%)

Query: 181 IIATGSDVKSLPGITIDEKRI-----VSSTGAL--ALNEVPKKLVVIGAGYIGLEMGSVW 233
           I ATG D + L  +  D   +           L   L+   K  VVIG GYIGLE  +V 
Sbjct: 112 IWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVL 171

Query: 234 ARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LT 291
            + G  VT++E    +        + + +Q       +       +  ++  G  V  + 
Sbjct: 172 TKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVR 231

Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNI 346
           +     G  +++ AD+V+V  G  P       AG      GV+ D+  R        T++
Sbjct: 232 M---QDG--SVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCR--------TSL 277

Query: 347 PGVYAIGDV 355
             VYAIGD 
Sbjct: 278 TDVYAIGDC 286

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 88.8 bits (221), Expect = 8e-20
 Identities = 44/341 (12%), Positives = 100/341 (29%), Gaps = 81/341 (23%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
           ++A    D  VIG GP G  A++   +   +    +                   +  +S
Sbjct: 1   SNAMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN------------TNRNRVTQNS 48

Query: 98  HMY--------HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT 149
           H +         E      +  +K+ SV           +K V  +T+   GLF+     
Sbjct: 49  HGFITRDGIKPEEFKEIGLNEVMKYPSVHY--------YEKTVVMITKQSTGLFE----- 95

Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---VSS-- 204
                          + T +        + +++ATG   +  P I    +     + S  
Sbjct: 96  ---------------IVTKDHT--KYLAERVLLATGMQEE-FPSIPNVREYYGKSLFSCP 137

Query: 205 --TGALALNEVPKKLVVIGAGYIG-LEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF 261
              G    +   + L++I       L M  +     +++ +         +   E+ +  
Sbjct: 138 YCDGWELKD---QPLIIISENEDHTLHMTKLVYNWSTDLVIA--------TNGNELSQTI 186

Query: 262 QRSLEKQKMKFMLK--TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319
              L  + +  + +    + G       V+             +E     +         
Sbjct: 187 MDELSNKNIPVITESIRTLQGEGGYLKKVEF-------HSGLRIERAGGFIVPTFFRPNQ 239

Query: 320 GLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360
            +  +++G E    G   +++   T+   +Y  G+      
Sbjct: 240 FI--EQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP 278

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 38/234 (16%)

Query: 181 IIATGSDVKSLPGITIDEKRIV------SSTGALALNEV---PKKLVVIGAGYIGLEMGS 231
           ++ATG   + LP  +    +        +   A  +        +LVVIG GYIGLE+ +
Sbjct: 107 VLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAA 166

Query: 232 VWARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
              +    VT+++ AA +        +   ++    +  +     T+V G ++S D  K+
Sbjct: 167 TAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV 226

Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATN 345
           T      G  T L AD+V+   G  P       AGL +D  G+  ++  +        T+
Sbjct: 227 TAVLCEDG--TRLPADLVIAGIGLIPNCELASAAGLQVDN-GIVINEHMQ--------TS 275

Query: 346 IPGVYAIGDV--IPGPMLAHK--------AEEDGVACVEFLAGKHGHVDYDKVP 389
            P + A+GD       +            A E        L GK      +  P
Sbjct: 276 DPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK--VPRDEAAP 327

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 89.9 bits (224), Expect = 1e-19
 Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 30/187 (16%)

Query: 181 IIATGSDVKSLPGITIDEKRIV---SSTGALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
           ++ATG+  ++LP +      +    +   A  +        +L+++G G IGLE+ +   
Sbjct: 106 VLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATAR 165

Query: 235 RLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
             G  V++VE    +   +    +     R    Q +    +  V G       V L   
Sbjct: 166 TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV--DGVVLL--- 220

Query: 294 PAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIPG 348
               G  T + AD+V+V  G          AGL  D  G+  D  GR        T  P 
Sbjct: 221 --DDG--TRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGR--------TTCPD 267

Query: 349 VYAIGDV 355
           VYA+GDV
Sbjct: 268 VYALGDV 274

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 89.9 bits (224), Expect = 1e-19
 Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 37/230 (16%)

Query: 181 IIATGSDVKSLPGITIDEKRIV---SSTGALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
           +IATGS  +++         +V   +      L +      +L+++G G IG E+ +   
Sbjct: 104 VIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTAR 163

Query: 235 RLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
           +LG  VT++E   ++ V  +   I    +  L +  ++  L T VVG    G   ++   
Sbjct: 164 KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMA- 222

Query: 294 PAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIPG 348
             + G      AD  L+  G  P       AGL  D+ GV  D  G         T   G
Sbjct: 223 --SDG--RSFVADSALICVGAEPADQLARQAGLACDR-GVIVDHCGA--------TLAKG 269

Query: 349 VYAIGDV--IPGPMLAHK-------AEEDGVACVEFLAGKHGHVDYDKVP 389
           V+A+GDV   P      +       A+    A    + GK  +V   ++P
Sbjct: 270 VFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGK--NVSAPQLP 317

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 88.0 bits (219), Expect = 4e-19
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 27/188 (14%)

Query: 181 IIATGSDVKSLPGITIDEKRIV---SSTGALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
           ++ATG+  + L         ++   +   +  L +     K +VVIGAG+IGLE  +   
Sbjct: 103 VLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162

Query: 235 RLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTL 292
             G EV VVE A  +    +  EI   F        ++     +   +   GD V  + L
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVL 222

Query: 293 EPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIP 347
              + G    L  D+V+V  G  P       AGL     G+  D+           T+ P
Sbjct: 223 ---SDG--NTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLL--------TSDP 268

Query: 348 GVYAIGDV 355
            + AIGD 
Sbjct: 269 HISAIGDC 276

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 85.7 bits (213), Expect = 8e-19
 Identities = 47/329 (14%), Positives = 86/329 (26%), Gaps = 84/329 (25%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY---- 100
           DV++IGG   G  AA++  +       ++  G                    SH +    
Sbjct: 4   DVIIIGGSYAGLSAALQLGRARKNILLVDA-GERRN-----------RFASHSHGFLGQD 51

Query: 101 ----HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
                E +        ++ ++          + +      +G  G F             
Sbjct: 52  GKAPGEIIAEARRQIERYPTIHW-------VEGRVTD--AKGSFGEF------------- 89

Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---VSS----TGALA 209
                 V +D    G        +I+A G   + LP I    +R    V       G   
Sbjct: 90  -----IVEID----GGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCPYCHGYEL 139

Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269
                 K+ VI A  + +    +    G          +             Q +L   +
Sbjct: 140 DQ---GKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDAD---------QHALLAAR 187

Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG---RTPFTAGLGLDKI 326
              +  T++  +      V L        +   +    +           +   LG    
Sbjct: 188 GVRVETTRIREI-AGHADVVL-------ADGRSIALAGLFTQPKLRITVDWIEKLGCAV- 238

Query: 327 GVETDKMGRIPVNERFATNIPGVYAIGDV 355
             E      I  +    T   G++A GDV
Sbjct: 239 -EEGPMGSTIVTDPMKQTTARGIFACGDV 266

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 86.1 bits (214), Expect = 2e-18
 Identities = 44/250 (17%), Positives = 80/250 (32%), Gaps = 58/250 (23%)

Query: 181 IIATGSD-----VKSLPGI----TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
           IIA+GS      V     I    +  D  +I          +   K  +IG G +G+E+ 
Sbjct: 109 IIASGSIANKIKVPHADEIFSLYSYDDALKI------KDECKNKGKAFIIGGGILGIELA 162

Query: 231 SVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK 289
                 G+  ++       +   +D +     +  L++  +K    +    +        
Sbjct: 163 QAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMG------- 215

Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
                       ++ +  V+ + G  P      +    + + + G I VN+   T+I  +
Sbjct: 216 -----------DLIRSSCVITAVGVKPNLD-F-IKDTEIASKR-G-ILVNDHMETSIKDI 260

Query: 350 YAIGDV--IPGPMLAH--KAEEDGVACVEFLAGKHGHVDYD--------KVPGVVYTHPE 397
           YA GDV    G        A + G        G+     Y         KV G+      
Sbjct: 261 YACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDAS--YSEIIPSPILKVSGI-----S 313

Query: 398 VASVGKTEEQ 407
           + S G  E  
Sbjct: 314 IISCGDIENN 323

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 44/335 (13%), Positives = 104/335 (31%), Gaps = 49/335 (14%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
            V +IG G  G   AI     G+    I ++G +G +  +    P      +        
Sbjct: 6   KVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW---PKSTRTITPSFTS--- 59

Query: 105 HSFASHGVKFSSVE----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFIS 159
           + F    +   S++              +     L                  Y      
Sbjct: 60  NGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQV------------VANHYELNIFE 107

Query: 160 PSEV-SVDTIEGGNTV------VKGKNIIIATGS-DVKSLPGITIDEKRIVSSTGALALN 211
            + V ++   +   T+           I +ATG  +    P         +         
Sbjct: 108 NTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFN-- 165

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV-------EFAADIVPSMDGEIRKQFQRS 264
               + VVIG    G +     A+ GS++ +        +  AD    +    R++    
Sbjct: 166 --KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV 223

Query: 265 LEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
           +++  +++  +   V  +D +     ++ +    G+      + +L +           +
Sbjct: 224 IKQGARIEMNVHYTVKDIDFNNGQYHISFD---SGQSVHTPHEPILATGFDATK--NPIV 278

Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
            ++ V T++  ++  ++  +T  P ++ IG  +  
Sbjct: 279 QQLFVTTNQDIKLTTHDE-STRYPNIFMIGATVEN 312

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 77.2 bits (191), Expect = 8e-16
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 38/206 (18%)

Query: 167 TIEGGNTVVKGKNIIIATGSDVK-----SLPGITIDEKRIVSSTGALALNEVP------- 214
            +         K +II  G+         L      E + +          V        
Sbjct: 102 KLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYF-------VDDLQKFAG 154

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKM 270
           +++ ++G G   ++   +   +  EV+++    +F A           +    +L   K+
Sbjct: 155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH----------EHSVENLHASKV 204

Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-LDKIGVE 329
             +       +       +L LE   G  K ILE D ++V+ G   F + LG +   G++
Sbjct: 205 NVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYG---FVSSLGPIKNWGLD 261

Query: 330 TDKMGRIPVNERFATNIPGVYAIGDV 355
            +K   I V     TNI G +A GD+
Sbjct: 262 IEK-NSIVVKSTMETNIEGFFAAGDI 286

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85
          D+ +IGGGP G   A            IE    LGG    +
Sbjct: 9  DITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL 49

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 75.2 bits (186), Expect = 4e-15
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 38/203 (18%)

Query: 170 GGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GALALNEVPKKLVV 219
                 K  ++I+  G   + L  PG    E+      +S  S     L  N   + + V
Sbjct: 107 KRKGEFKADSVILGIGVKRRKLGVPG----EQEFAGRGISYCSVADAPLFKN---RVVAV 159

Query: 220 IGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMKFML 274
           IG G   LE   + +   ++V ++     F A             +     +K  ++F+L
Sbjct: 160 IGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQ----------PIYVETVKKKPNVEFVL 209

Query: 275 KTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
            + V  +   GD V  ++ +E    GE   L  + V +  G  P T        G+ETD 
Sbjct: 210 NSVVKEIK--GDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFA--KSNGIETDT 265

Query: 333 MGRIPVNERFATNIPGVYAIGDV 355
            G I V+E   T++PGV+A GD 
Sbjct: 266 NGYIKVDEWMRTSVPGVFAAGDC 288

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
              ++ DV+++G GP  Y AA+ +A+  LKT  I +
Sbjct: 10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGE 46

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 60/366 (16%), Positives = 105/366 (28%), Gaps = 119/366 (32%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           + V+G GP G   AI AA  G + T  +    +GG       IP K   + +  Y+  M 
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRM- 434

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
                GV                               K N                V+ 
Sbjct: 435 -IEVTGVT-----------------------------LKLNH--------------TVTA 450

Query: 166 DTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALA-LNEVPKKLVVIGA 222
           D ++  +        I+A+G       + G  ID  +++S    L     V  K+ +IG 
Sbjct: 451 DQLQAFDET------ILASGIVPRTPPIDG--IDHPKVLSYLDVLRDKAPVGNKVAIIGC 502

Query: 223 GYIGLEMGSVWARLGSEVT--VVEFAADIVPSMDGEIRKQFQ------------------ 262
           G IG +     ++ G   +  +  F  +       +                        
Sbjct: 503 GGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQR 562

Query: 263 ------------------RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE 304
                              +L  + +K +       +D   DG+ +       GE  +L 
Sbjct: 563 KASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV----INGETQVLA 616

Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD-VIPGPMLAH 363
            D V++ AG+ P                     + +    +   V+ IG   +   + A 
Sbjct: 617 VDNVVICAGQEPNR------------------ALAQPLIDSGKTVHLIGGCDVAMELDAR 658

Query: 364 KAEEDG 369
           +A   G
Sbjct: 659 RAIAQG 664

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 68.7 bits (169), Expect = 6e-13
 Identities = 63/205 (30%), Positives = 85/205 (41%), Gaps = 37/205 (18%)

Query: 167 TIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VSS--T--GALALNEVPKK 216
           T+ G N   + K +I+ATG+D + L  PG    E       VS+  T  G        KK
Sbjct: 102 TVRGYNGEYRAKAVILATGADPRKLGIPG----EDNFWGKGVSTCATCDGFFYKG---KK 154

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMK 271
           +VVIG G   +E G    +   EVTV+       A+          K  Q R+    KMK
Sbjct: 155 VVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN----------KVAQARAFANPKMK 204

Query: 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
           F+  T V  +    D V  + L     GE + L  D V +  G  P T      K  V  
Sbjct: 205 FIWDTAVEEI-QGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNT---AFVKDTVSL 260

Query: 331 DKMGRIPVNERFATNIPGVYAIGDV 355
              G + V +   TNIP ++A GDV
Sbjct: 261 RDDGYVDVRDEIYTNIPMLFAAGDV 285

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 67.5 bits (164), Expect = 2e-12
 Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 18/216 (8%)

Query: 43  ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSS--H 98
            +DV+++G G  G  AA   A+    LK   IE   A GG     G + S  ++      
Sbjct: 65  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL 124

Query: 99  MYHEAMHSFASHG---VKFSSVEVDLPAMMAQKDKA---VSNLTRGIEGLFKKNKVTYVK 152
              E    +   G   V   +       +          + N T  +E L  +      +
Sbjct: 125 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATC-VEDLVTRPPTEKGE 183

Query: 153 GY--GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTG--AL 208
               G   + + V   T   G       N+I   G        ++     I+S+TG    
Sbjct: 184 VTVAGVVTNWTLV---TQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGP 240

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE 244
                 K++V I        M  +         V+ 
Sbjct: 241 FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIH 276

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 35/204 (17%)

Query: 170 GGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VSS--T--GALALNEVPKKLVV 219
                 + K++IIATG   K     G    E       VS+  T  G    N   K++ V
Sbjct: 96  EDGKTFEAKSVIIATGGSPKRTGIKG----ESEYWGKGVSTCATCDGFFYKN---KEVAV 148

Query: 220 IGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMKFML 274
           +G G   +E     A +  +V ++     F                   +    K++F+ 
Sbjct: 149 LGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA----------PITLEHAKNNDKIEFLT 198

Query: 275 KTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETD 331
              V  +     GV  L+++  A  EK  L      +  G     A L    + +  + D
Sbjct: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCD 258

Query: 332 KMGRIPVNERFATNIPGVYAIGDV 355
           + G I V+    TN+ G++A GD+
Sbjct: 259 EYGSIVVDFSMKTNVQGLFAAGDI 282

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          D  +IGGGP G  A + A + G+K   + ++G  GG
Sbjct: 3  DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 65.2 bits (160), Expect = 8e-12
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 32/201 (15%)

Query: 171 GNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VSS--T--GALALNEVPKKLVVI 220
           G      K +I+ TGS  K     G    E       VS+  T  G    N   K++ V+
Sbjct: 101 GGKTELAKAVIVCTGSAPKKAGFKG----EDEFFGKGVSTCATCDGFFYKN---KEVAVL 153

Query: 221 GAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276
           G G   LE     A + S++ ++    EF A   PS         ++  + +K++ +   
Sbjct: 154 GGGDTALEEALYLANICSKIYLIHRRDEFRAA--PST------V-EKVKKNEKIELITSA 204

Query: 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETDKMG 334
            V  V     GV         G    L    +    G       L     K     ++ G
Sbjct: 205 SVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGG 264

Query: 335 RIPVNERFATNIPGVYAIGDV 355
           ++ V+ +  T++ G++A GD+
Sbjct: 265 QVSVDLKMQTSVAGLFAAGDL 285

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          ++   DV +IGGGP G  A + A + GLK   + ++G  GG
Sbjct: 1  SNAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGG 41

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 59.7 bits (144), Expect = 4e-10
 Identities = 44/218 (20%), Positives = 72/218 (33%), Gaps = 27/218 (12%)

Query: 43  ENDVVVIGGGPGGYVAAIK-AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
           E DVVV+G G  G  AA + +    ++   IE+  + GG     G      L  +  +  
Sbjct: 39  ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG-----GAWLGGQLFSAMIVRK 93

Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161
            A       GV +   +  +         A    +  +  L  +  V             
Sbjct: 94  PAHLFLDEIGVAYDEQDTYVVV-----KHAALFTSTIMSKLLARPNVKLFNA-------- 140

Query: 162 EVSV-DTIEGGNTV---VKGKNIIIATGSDVKSLPGITIDEKRIVSSTG--ALALNEVPK 215
            V+  D I  GN V   V    ++         +    ++ K +VSS G          K
Sbjct: 141 -VAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 199

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
           +L  IG       M ++      E  +V    ++VP M
Sbjct: 200 RLKSIGMIDHVPGMKALDMNTA-EDAIVRLTREVVPGM 236

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)

Query: 43  ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
           E D+V++G G  G  AA   + L   L+ T +E   A GG     G      L  +  M 
Sbjct: 79  ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQ-----LFSAMVMR 133

Query: 101 HEAMHSFASHGVKF----------SSVEVD---LPAMMAQKDKAVSNLTRGIEGLFKKNK 147
             A       GV +           +       L  ++ + +  + N T   + + +K+ 
Sbjct: 134 KPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHH 193

Query: 148 VTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTG- 206
                         + +   I G   VV    ++     D  ++   TI+   I+S+TG 
Sbjct: 194 AESSSSSDDG-EAEDEAKVRIAG---VVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGH 249

Query: 207 -ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
                    K+LV +        M  +  +   E  +V    +IVP +
Sbjct: 250 DGPFGAFSVKRLVSMKQMERLNGMRGLDMQSA-EDAIVNNTREIVPGL 296

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 57/396 (14%), Positives = 103/396 (26%), Gaps = 109/396 (27%)

Query: 46  VVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE 102
           V+V+GG  G   AA    +L         I K                         +  
Sbjct: 4   VLVLGGRFGALTAAYTLKRLVGSKADVKVINK--------------------SRFSYFRP 43

Query: 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
           A+   A        ++VDL                       +  + + +G  + I    
Sbjct: 44  ALPHVAIGVRDVDELKVDL------------------SEALPEKGIQFQEGTVEKIDAKS 85

Query: 163 --VSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGI---------------------TID 197
             V     +G     +   +I+  G+    + + G                      +  
Sbjct: 86  SMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQ 145

Query: 198 EKRIVSSTGALALNEVPKKLVV-----------IGAGY-IGLEMGSVWARLG----SEVT 241
              I   +G       PK  V             G  + + L +   + + G      VT
Sbjct: 146 GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVT 205

Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT 301
           V     + +  +    RK       +  +K +   K+  +      +         G   
Sbjct: 206 VFS-PGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIR--EHEIVD-----EKGNT- 256

Query: 302 ILEADVVLVSAGRTP----FTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDV- 355
            + AD+ ++    T       +   L       D  G IP +    +     VYA+GD  
Sbjct: 257 -IPADITILLPPYTGNPALKNSTPDL------VDDGGFIPTDLNMVSIKYDNVYAVGDAN 309

Query: 356 -IPGPMLAHKAEEDGVACVE----FLAGKHGHVDYD 386
            +  P L + A   G    +     L        Y 
Sbjct: 310 SMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYY 345

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATNIPGVYAIGDVI 356
            +   L+ADVV+ + G       +      ++ ++     V+     T+ P V+A GD++
Sbjct: 424 DQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483

Query: 357 PGPMLAHKAEEDG----VACVEFLAGKHG 381
                  ++  DG        +++  ++G
Sbjct: 484 GMANTTVESVNDGKQASWYIHKYIQAQYG 512

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 34/201 (16%)

Query: 170 GGNTVVKGKNIIIATGSDVKSLPGITIDEKRI----VSS--T--GALALNEVPKKLVVIG 221
                 + + +I+A G+  + L  +   E+ +    VSS  T  G    +   + + VIG
Sbjct: 108 ADGQTHRARAVILAMGAAARYL-QVP-GEQELLGRGVSSCATCDGFFFRD---QDIAVIG 162

Query: 222 AGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMKFMLKT 276
            G   +E  +   R    VT+V    EF A           K    R+    K++F+   
Sbjct: 163 GGDSAMEEATFLTRFARSVTLVHRRDEFRAS----------KIMLDRARNNDKIRFLTNH 212

Query: 277 KVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
            VV V      V  L +     G +T L    V V+ G  P +   GL +  ++ D  G 
Sbjct: 213 TVVAV-DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRS---GLVREAIDVDPDGY 268

Query: 336 IPVNERF-ATNIPGVYAIGDV 355
           + V  R  +T++PGV+A GD+
Sbjct: 269 VLVQGRTTSTSLPGVFAAGDL 289

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 54.0 bits (131), Expect = 5e-08
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
            ++  +   D +G   + T +   G E   ++AD+V+ + G  P       D+  ++  +
Sbjct: 339 AVRIHLGVADATG---RQTPQVIEGSEF-TVQADLVIKALGFEPEDLPNAFDEPELKVTR 394

Query: 333 MGRIPVNER-FATNIPGVYAIGDV 355
            G + V+ R   TN+ GV+A GD+
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 56/195 (28%)

Query: 42  DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIP----------- 89
           D  DVVV+G G  G+ AAI A   G K   IEK   +GG   L  G +            
Sbjct: 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK 184

Query: 90  ---SKALLHSSHMYH-----------EAMHSFA-----------SHGVKFSSVEVDLPAM 124
              S  L                     +   +           + G   + V   +   
Sbjct: 185 ITDSPEL----MFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVG-MMGGA 239

Query: 125 M-------AQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFISPSE-----VSVDTIEG 170
                          +++ + +     K  +         + +   +     + V  +  
Sbjct: 240 SVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYK 299

Query: 171 GNTVVKGKNIIIATG 185
           G   VK   +I+ATG
Sbjct: 300 GYYWVKADAVILATG 314

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
           E DVVV G G  G  A+I+AA+ G     +E+    GG 
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 45/214 (21%)

Query: 167 TIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSST------------GALAL-- 210
            +   +  +    +I+A G+  K  S  G       ++               GA  +  
Sbjct: 103 KLFTDSKAILADAVILAIGAVAKRLSFVG----SGEVLGGFWNRGISACAVCDGAAPIFR 158

Query: 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSL 265
           N   K L VIG G   +E  +   + GS+V ++     F A           K  Q R+L
Sbjct: 159 N---KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS----------KIMQQRAL 205

Query: 266 EKQKMKFMLKTKVVGV--DLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322
              K+  +  + VV    D   D +  L ++    G+ + L+   +  + G  P T    
Sbjct: 206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATK--- 262

Query: 323 LDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDV 355
               GVE D  G +        T++PGV+A GDV
Sbjct: 263 FLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDV 296

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 45/181 (24%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTC--LNVGCIPSKALL 94
           + ++IG G  G   A + A+LG   T  +    +G        G C   N+   P+  L 
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 95  HSSHMYHEAMHSF---------ASHGVKF------------SSVEVDLPAMMAQKDKAVS 133
            + H    A+  +         A  G+ +             + ++ +  + ++ DK   
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQI-VEMLKSECDKY-- 122

Query: 134 NLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193
               G + +  +++V+ V    + I   E     ++  +T  + KN+I+ATG    S+PG
Sbjct: 123 ----GAK-ILLRSEVSQV----ERIQNDEKVRFVLQVNSTQWQCKNLIVATGG--LSMPG 171

Query: 194 I 194
           +
Sbjct: 172 L 172

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIP 89
           DVV+IG G  G  AA+ A   G K   +EK    GG T L  G + 
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMN 173

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 38  ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
           A  S+   V+V+G G  G+ A++ A + G     ++K    GG 
Sbjct: 116 AGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 159

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 39/206 (18%)

Query: 169 EGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRI----VSS--T--GALAL--NEVPKK 216
                 V    II+ATG+  K   LPG    E+      +S+     GA+ +  N   K 
Sbjct: 123 NEDAEPVTTDAIILATGASAKRMHLPG----EETYWQKGISACAVCDGAVPIFRN---KP 175

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMK 271
           L VIG G    E      + GS+V ++       A              Q R+ + +K++
Sbjct: 176 LAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAS----------TIMQKRAEKNEKIE 225

Query: 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
            +  T  +     G  +  L ++     E+T L    +  + G TP T    +    V+T
Sbjct: 226 ILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK---IVAGQVDT 282

Query: 331 DKMGRIPVNERF-ATNIPGVYAIGDV 355
           D+ G I        T++PG +A GDV
Sbjct: 283 DEAGYIKTVPGSSLTSVPGFFAAGDV 308

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 51/182 (28%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTC--LNVGCIPSKALL 94
           DVV+IG G  G + AI+A + G +   I+   A G        G C   N+   P   L 
Sbjct: 29  DVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS 88

Query: 95  HSSHMYHEAMHSF---------ASHGVKF------------SSVEVDLPAMMAQKDKAVS 133
            + H    A+  +           HG+ +            S+ ++ +  +MA+  +A  
Sbjct: 89  GNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDI-IRMLMAEMKEA-- 145

Query: 134 NLTRGIEGLFKKNKVTYV-KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP 192
               G++ L  +  +  V +    F          +      V   ++++A+G   KS+P
Sbjct: 146 ----GVQ-LRLETSIGEVERTASGFR---------VTTSAGTVDAASLVVASGG--KSIP 189

Query: 193 GI 194
            +
Sbjct: 190 KM 191

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 36/283 (12%), Positives = 87/283 (30%), Gaps = 39/283 (13%)

Query: 133 SNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKS 190
            ++   I    ++  + ++    + I     ++   +G    V    ++IATG     ++
Sbjct: 59  DDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGN--TVHYDYLMIATGPKLAFEN 116

Query: 191 LPGITIDEKRIVSSTGAL----------ALNEVPKKLVVIGAGYIG---------LEMGS 231
           +PG    E  + S               AL   P  +V+                + + S
Sbjct: 117 VPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVAS 176

Query: 232 VWARLG-----SEVTVVEFAADIVPSMDG---EIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
              + G        T +     I         + +    + L+++ ++     KV  V+ 
Sbjct: 177 DLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE- 235

Query: 284 SGDGVKLTLEPAAGG--EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
             + + +T     G   ++ +L     ++      F     +  +    +  G + V+E 
Sbjct: 236 -DNKMYVTQVDEKGETIKEMVLPVKFGMMIP---AFKGVPAVAGVEGLCNPGGFVLVDEH 291

Query: 342 F-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV 383
             +     ++A G  I  P +       G     ++       
Sbjct: 292 QRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSA 334

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
              +E DV+V+G G  G  A  +  +LG     IE  G +GG 
Sbjct: 11 RQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 54

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
           + S   D VVIG G  G   A    Q G+K   IE    +GGT
Sbjct: 4  RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGT 47

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 30 SFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          S        + +   DVVV+G G  G  A  +    GL     E    +GG 
Sbjct: 8  SVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV 59

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 58/188 (30%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNV--GCIPSKALL 94
           DV+VIGGGP G +AAI AA+ G     ++K   LG        G C NV       + + 
Sbjct: 28  DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRC-NVTNRLPLDEIVK 86

Query: 95  H------------SSHMYHEAMHSFASHGVKF-------------SSVEVDLPAMMAQKD 129
           H            S     + +  F + GVK               +  V + A++ +  
Sbjct: 87  HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSV-VDALLTRLK 145

Query: 130 KAVSNLTRGIEGLFKKNKVTYVK---GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS 186
                   G++ +     V  ++   G  K +         I     V++  +++IA G 
Sbjct: 146 DL------GVK-IRTNTPVETIEYENGQTKAV---------ILQTGEVLETNHVVIAVGG 189

Query: 187 DVKSLPGI 194
             KS+P  
Sbjct: 190 --KSVPQT 195

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82
          D +++G G  G V A +  +L  K   IEKR  +GG  
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA 40

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLH--SSHM 99
           D +++G G  G V A + A  G +   +++R  +GG    C +   +    L+H    H+
Sbjct: 31  DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGV----LIHPYGPHI 86

Query: 100 YH---EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK 147
           +H   + +  + S   ++   +  + A +  +   +      +  L+  N 
Sbjct: 87  FHTNSKDVFEYLSRFTEWRPYQHRVLASVDGQLLPIPINLDTVNRLYGLNL 137

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG-CIPSKAL 93
          DV++IGGG  G  AA + ++ GLK   ++ +          G  +     
Sbjct: 8  DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHF 57

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
            VV+G G GG +A    A+ G +   +EK   +GG
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
          DV+VIG GP G VAA    + G K   +EK
Sbjct: 7  DVLVIGAGPAGTVAASLVNKSGFKVKIVEK 36

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
           S    + V +IGGGP G VA +   +LG   T  E+
Sbjct: 18 GSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYER 54

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH--SSHMYH- 101
            ++++G G  G V   + A+ G +   I++R  +GG   +     +  ++H    H++H 
Sbjct: 5   KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT 64

Query: 102 --EAMHSFASHGVKF 114
             E + ++ +   + 
Sbjct: 65  DNETVWNYVNKHAEM 79

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84
           DV+V+G GP G  AA +A++ G +   +++R   GGT L+
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD 169

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
          D++VIGGGPGG   A   A  G +   +E+
Sbjct: 9  DLIVIGGGPGGSTLASFVAMRGHRVLLLER 38

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76
          DV+V+GGGP G  AA+  A+ GLK   ++   
Sbjct: 3  DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
            VVIG G GG ++A + ++ G +    E+    GG
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGG 37

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKA-AQLGLKTTCIEKRGALGGT 81
          A  +   D VVIG G GG  A  K   +LGL T   +K    GGT
Sbjct: 3  AQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGT 47

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTC-----LNVGCIPSKALLHSSH 98
           D+ V+G G  G   A + A QL  +   +E+R  +GG          G    K   H  H
Sbjct: 9   DLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFH 68

Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
             ++ +  +      F+     + AM   +          +   F   K    +   + I
Sbjct: 69  TSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAYQFPMGLGLVSQFF--GKYFTPEQARQLI 126

Query: 159 SPSEVSVDTIEGGN 172
           +     +DT +  N
Sbjct: 127 AEQAAEIDTADAQN 140

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 44/356 (12%), Positives = 97/356 (27%), Gaps = 94/356 (26%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
           D++ +G GP     AI   +       L+   ++K+G       +   + S++ L  S +
Sbjct: 32  DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR---WHGNTLVSQSELQISFL 88

Query: 100 YHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS 159
                    +    F          + + D+ V  +  G     +     Y++       
Sbjct: 89  KDLVSLRNPTSPYSF-------VNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQ 141

Query: 160 PS----------------------EVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGIT 195
                                    V     +G   V   + ++++ G    +  +    
Sbjct: 142 EQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRAL 201

Query: 196 IDEKRIVSST-------GALALNEVPKKLVVIGAGYIGLEMGSVWARL--GSEVTVV--- 243
             + R+   +            +  P K+ +IG G    E            +  ++   
Sbjct: 202 KGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRA 261

Query: 244 -----------------EFAADIVPSMDGEIRKQF------------------------- 261
                                D++ S +   R++                          
Sbjct: 262 SALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFY 321

Query: 262 -QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
            Q+     +  F   T V     +  G++L L  A  GE ++   D V+++ G   
Sbjct: 322 RQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYER 377

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGGTCLNVGCIPSKAL 93
          ++E DVV++G GP G  AA +  QL       L+   +EK   +G   L+  C+  +A 
Sbjct: 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF 91

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 59/355 (16%), Positives = 108/355 (30%), Gaps = 78/355 (21%)

Query: 42  DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
           D  DVVVIGGG  G  A     + GL    ++   + GG   +     S  L   +    
Sbjct: 2   DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA--WHSLHLFSPAGWSS 59

Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFISP 160
                  +    + +           + + ++ L +            Y + Y    + P
Sbjct: 60  IPGWPMPASQGPYPA-----------RAEVLAYLAQ------------YEQKYALPVLRP 96

Query: 161 SEV-SVDTIEGGNTVVKG-------KNIIIATGSDVK----SLPGITIDEKRIVSS---T 205
             V  V        VV         + +I ATG+  +       G+       + S   +
Sbjct: 97  IRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYS 156

Query: 206 GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV-EFAADIVPSMDGEIRKQFQRS 264
                     ++ +IG G  G ++ +  + +     +     A +   +DG  R  F+R+
Sbjct: 157 TPAPFAG--MRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDG--RVLFERA 212

Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTI---------------------L 303
            E+ K +   +   +     GD V +     A     +                      
Sbjct: 213 TERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTER 272

Query: 304 EADVVLVSAG---RTPFTAGLGLDKIGVETDKMGRIPVNER--FATNIPGVYAIG 353
             D V+   G         GL L          G++ V+     A  +P V+ +G
Sbjct: 273 AFDAVIWCTGFRPALSHLKGLDL------VTPQGQVEVDGSGLRALAVPSVWLLG 321

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84
           DV +IGGGP G  AA++  Q  L    IE+RG LGG    
Sbjct: 110 DVAIIGGGPAGIGAALELQQ-YLTVALIEERGWLGGDMWL 148

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 45 DVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTC 82
          DV+VIG GP G  AA +  Q+ G     ++     GG  
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA 50

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKT-TCIEKRGALGG 80
          S S ++ + +IG GP G  A +   Q G    T +E+   +GG
Sbjct: 2  SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76
           +  D    +VIG G GG VAA++  Q G+ T  +E  G
Sbjct: 6  LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVE-MG 43

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
             +V+G GP G  AA++ A LG +   +EKR
Sbjct: 94  KCLVVGAGPCGLRAAVELALLGARVVLVEKR 124

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 46  VVVIGGGPGGYVAAIKAAQL-------GLKTTCIEKRGALGGTCL---NVGCIPSKALLH 95
           + ++G GP G +A ++A Q          +  C EK+   GG        G   +   +H
Sbjct: 5   IAILGAGPSG-MAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63

Query: 96  SSHMY 100
           SS MY
Sbjct: 64  SS-MY 67

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTC 82
           +V+IG GP G  AA++  +LG K     E     GG  
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS 49

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 298 GEKTILEADVVLVSAG-RTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
           GE+  L A +V+ S G R   T GL  D      D+ G IP         P  Y +G + 
Sbjct: 308 GEREELPAQLVVRSVGYRGVPTPGLPFD------DQSGTIPNVGGRINGSPNEYVVGWIK 361

Query: 357 PGP 359
            GP
Sbjct: 362 RGP 364

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
                VVIG G G  V+A++  + G++T  +E 
Sbjct: 3  GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEM 36

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
          D +VIGGG  G  AA+   Q GL T  +  
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVLSL 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	100.0
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	100.0
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.98
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.98
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.96
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.95
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.94
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.93
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.9
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.85
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.83
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.73
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.72
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.61
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.58
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.58
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.45
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.39
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.33
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.33
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.28
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.23
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.17
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.16
3dme_A	369	Conserved exported protein; structural genomics, P	99.13
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.08
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.03
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.02
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.0
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.97
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.96
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.96
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.94
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.93
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.93
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.92
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.92
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.91
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.9
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.89
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.89
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.88
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.86
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.86
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.85
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.85
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.84
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.83
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.82
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.82
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.81
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.8
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.77
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.75
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.75
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.74
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.74
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.74
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.73
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.71
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.68
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.67
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.66
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.65
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.62
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.61
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.61
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.6
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.59
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.59
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.58
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.57
3atr_A	453	Conserved archaeal protein; saturating double bond	98.56
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.56
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.56
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.55
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.55
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.55
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.55
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.55
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.54
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.54
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.53
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.52
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.52
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.51
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.51
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.5
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.49
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.48
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.48
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.48
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.47
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.46
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.45
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.44
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.41
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.39
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.38
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.38
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.37
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.37
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.36
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.36
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.35
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.35
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.34
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.33
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.32
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.32
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.31
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.3
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.3
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.3
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.3
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.3
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.29
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.29
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.29
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.28
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.28
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.27
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.27
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.26
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.26
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.25
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.25
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.25
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.24
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.24
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.23
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.23
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.21
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.2
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.2
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.19
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.19
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.19
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.19
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.19
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.18
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.18
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.18
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.17
3atr_A	453	Conserved archaeal protein; saturating double bond	98.17
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.16
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.16
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.16
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.16
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.16
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.15
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.14
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.14
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.13
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.13
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.13
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.13
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.12
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.11
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.11
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.11
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.11
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.11
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.09
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.08
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.08
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.08
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.07
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.06
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.05
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.05
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.03
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.03
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.03
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.03
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.03
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.03
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.99
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.99
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.97
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.97
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.96
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.96
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.96
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.96
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.96
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.95
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.95
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.94
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.93
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.93
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.92
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.92
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.91
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.91
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.9
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.88
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.88
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.87
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.85
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.85
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.84
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.84
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.82
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.82
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.81
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.79
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.79
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.79
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.78
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.78
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.76
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.75
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.75
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.75
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.73
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.73
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.71
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.7
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.7
4dna_A	463	Probable glutathione reductase; structural genomic	97.66
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.64
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.63
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.62
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.6
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.58
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.55
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.53
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.52
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.5
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.49
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.49
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.49
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.45
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.42
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.4
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.38
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.38
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.32
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.29
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.24
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.22
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.19
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.17
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.12
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.07
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.07
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.02
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.02
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.97
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.97
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	96.94
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.93
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.93
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.85
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.75
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.75
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.74
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.67
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.67
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.25
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.08
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.04
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.77
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.65
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.47
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.32
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.28
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	94.99
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.74
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.29
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.13
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	94.08
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.05
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.04
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	94.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	93.99
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.93
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.85
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.84
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	93.68
3dme_A	369	Conserved exported protein; structural genomics, P	93.66
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.61
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.61
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.57
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.54
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.52
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	93.51
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.46
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	93.43
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.38
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.33
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.3
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.25
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.25
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.25
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.17
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.16
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.13
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.1
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.06
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.01
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	92.98
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	92.96
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.96
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.9
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.79
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.78
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.73
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.65
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.58
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.57
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	92.51
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	92.47
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.45
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.34
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.32
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	92.31
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	92.28
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	92.26
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	92.25
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.22
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	92.19
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.19
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.18
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	92.14
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.12
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	92.1
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	92.07
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.92
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	91.85
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.82
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.73
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.66
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.65
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.63
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.57
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.56
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.54
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	91.54
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.54
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	91.5
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	91.49
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	91.34
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	91.25
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.23
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.19
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	91.18
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.14
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.14
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.08
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.95
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.91
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.91
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.89
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.85
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	90.66
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.61
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	90.5
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.45
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	90.44
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.44
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.33
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	90.32
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	90.3
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.27
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.23
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	90.22
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.2
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.05
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	90.05
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	90.04
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.98
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.98
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.96
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.94
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.88
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	89.83
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	89.83
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.81
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.71
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.68
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.67
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.66
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.62
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	89.49
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	89.49
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.43
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.38
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.37
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.36
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.36
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	89.15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.13
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.06
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.94
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.83
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	88.82
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.79

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.8e-71  Score=562.68  Aligned_cols=437  Identities=56%  Similarity=0.922  Sum_probs=399.6

Q ss_pred             CCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc
Q 011787           37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS  116 (477)
Q Consensus        37 ~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~  116 (477)
                      +.+++.++||+||||||||++||..|++.|++|+|||+++.+||+|.+.+|+|++.++.....+......+..+++....
T Consensus        19 ~~~~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~   98 (491)
T 3urh_A           19 YFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVAN   98 (491)
T ss_dssp             -------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCC
T ss_pred             chhhcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCC
Confidence            44455679999999999999999999999999999999899999999999999999998888888777767788888777


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCc-
Q 011787          117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT-  195 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~-  195 (477)
                      ..++|..+..+.......+...+...+++.+++++.+.+.+++++.+.|.+.+|...++.||+||||||++|+.+|++. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~  178 (491)
T 3urh_A           99 PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEV  178 (491)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCccc
Confidence            7899999999999999888888888899999999999999999999999988876678999999999999998888876 


Q ss_pred             -cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                       .+...++++.+...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~  258 (491)
T 3urh_A          179 AFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKL  258 (491)
T ss_dssp             CCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred             ccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEE
Confidence             4567789999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787          275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD  354 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD  354 (477)
                      ++++.+++.+++++.+.+.+..+++.+++++|.|++|+|++|+++.+.++..|+.++++|+|.||+++||++|+|||+||
T Consensus       259 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD  338 (491)
T 3urh_A          259 GAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGD  338 (491)
T ss_dssp             SEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred             CCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEe
Confidence            99999999888888887765333445789999999999999999987778889999999999999999999999999999


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCC
Q 011787          355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDA  434 (477)
Q Consensus       355 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (477)
                      |++.|.+++.|..||++||+||++...++++..+|+++|++|+++++|+||+||++.|+++.++.+++....++.+.+++
T Consensus       339 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  418 (491)
T 3urh_A          339 VVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQT  418 (491)
T ss_dssp             GSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCC
T ss_pred             cCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCCC
Confidence            99999999999999999999999987778899999999999999999999999999999999999999999999988888


Q ss_pred             ceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          435 EGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       435 ~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|++|+++|+++++|||+|++|++|.|+|+.+++||.++
T Consensus       419 ~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  457 (491)
T 3urh_A          419 DGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFG  457 (491)
T ss_dssp             CCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999854

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=2.2e-72  Score=569.14  Aligned_cols=427  Identities=27%  Similarity=0.385  Sum_probs=372.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      ..+||++||||||||++||.+++++|.+|+|||+.        ..+||+|+|.||+|+|.|+..+..++........+|+
T Consensus        40 ~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi  119 (542)
T 4b1b_A           40 TYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW  119 (542)
T ss_dssp             CSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence            34699999999999999999999999999999963        4589999999999999999988888777656677898


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecC--CceEEEEecEEEEccCCCCCC
Q 011787          113 KFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIE--GGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~--g~~~~i~~d~lvlAtG~~~~~  190 (477)
                      ......++|.++..+.+..++.+...+...+++.+|+++.+.+.+++++++.|...+  +..+++++|++|||||++|..
T Consensus       120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~  199 (542)
T 4b1b_A          120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHI  199 (542)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred             ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence            888888999999999999999998888889999999999999999999999886543  345789999999999999987


Q ss_pred             CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787          191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       191 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                      ||..+.....++++++++.+++.|++++|||||++|+|+|..|+++|.+||++.+ +++++.+|+++.+.+++.|+++||
T Consensus       200 P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~gi  278 (542)
T 4b1b_A          200 PDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGV  278 (542)
T ss_dssp             CSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccccchhHHHHHHHHHHhhcc
Confidence            7766655667899999999999999999999999999999999999999999986 567899999999999999999999


Q ss_pred             EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCe-ecCCCCCCCCCCe
Q 011787          271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI-PVNERFATNIPGV  349 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i-~vd~~l~t~~~~v  349 (477)
                      .++++..+.+++..++.+.+.+.     ++..+.+|.|++|+|++||++.+.++.+|+.++.++++ .+|+++||++|+|
T Consensus       279 ~~~~~~~v~~~~~~~~~~~v~~~-----~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~I  353 (542)
T 4b1b_A          279 MFKNGILPKKLTKMDDKILVEFS-----DKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSI  353 (542)
T ss_dssp             EEEETCCEEEEEEETTEEEEEET-----TSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTE
T ss_pred             eeecceEEEEEEecCCeEEEEEc-----CCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCe
Confidence            99999999999998888888775     55678899999999999999999999999999877665 7889999999999


Q ss_pred             EEecccCCC-CCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccc
Q 011787          350 YAIGDVIPG-PMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSR  427 (477)
Q Consensus       350 ya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  427 (477)
                      ||+|||++. |++++.|..||+++++||++.. ...++..+|+++|++|++++||+||+||++.+.++.+..+++....+
T Consensus       354 yAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~  433 (542)
T 4b1b_A          354 FAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNL  433 (542)
T ss_dssp             EECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC-----
T ss_pred             EEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccch
Confidence            999999965 7899999999999999999865 44689999999999999999999999999887766665555443222


Q ss_pred             c-----------------hhcCCCceEEEEEE-ECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          428 A-----------------KAIDDAEGIVKILA-EKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       428 ~-----------------~~~~~~~~~~k~~~-~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +                 ....+++||+|+++ +++|++|||+|++|++|+|||+.+++||.+.
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~  497 (542)
T 4b1b_A          434 EISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLK  497 (542)
T ss_dssp             ------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTC
T ss_pred             hhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            1                 12245679999985 5678999999999999999999999999854

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=4.8e-69  Score=544.77  Aligned_cols=430  Identities=49%  Similarity=0.795  Sum_probs=394.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC------CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS  115 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~------~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~  115 (477)
                      .+|||+|||||+||++||.+|++.|++|+|||++.      .+||+|.+.+|+|++.++.....++.....+..+++...
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            35899999999999999999999999999999975      489999999999999999888888877776778888777


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCc
Q 011787          116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT  195 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~  195 (477)
                      ...++|..+..+.....+.+...+...+++.+++++.+.+.+++.+.+.|...+|....+.||+||||||++|..+|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~  161 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP  161 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence            77899999999999988888888888888899999999999999999999887776678999999999999987777766


Q ss_pred             cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      .+...++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~  241 (476)
T 3lad_A          162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG  241 (476)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEEC
Confidence            66778899999988888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEeccc
Q 011787          276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV  355 (477)
Q Consensus       276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~  355 (477)
                      +++++++.+++++.+.+.+..  ..+++++|.|++|+|++|+++.+.++..|+.++++|+|.||+++||++|+|||+|||
T Consensus       242 ~~v~~i~~~~~~~~v~~~~~~--g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~  319 (476)
T 3lad_A          242 ARVTGTEVKNKQVTVKFVDAE--GEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDV  319 (476)
T ss_dssp             CEEEEEEECSSCEEEEEESSS--EEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred             CEEEEEEEcCCEEEEEEEeCC--CcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEcc
Confidence            999999988777777775311  126899999999999999998766888999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCc
Q 011787          356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE  435 (477)
Q Consensus       356 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (477)
                      ++.|.+++.|..||++||+||++...++++..+|+++|++|+++++|+||+||++.|+++.++.+++....++.+.++++
T Consensus       320 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (476)
T 3lad_A          320 VRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTA  399 (476)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCC
T ss_pred             CCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchheecCCCc
Confidence            99999999999999999999998877788999999999999999999999999999999999999999999999888889


Q ss_pred             eEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          436 GIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       436 ~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       400 ~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  437 (476)
T 3lad_A          400 GFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFG  437 (476)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999743

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=3.4e-67  Score=530.64  Aligned_cols=432  Identities=59%  Similarity=0.976  Sum_probs=381.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHH-hhhhhCCccccccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~  120 (477)
                      .++||+|||||+||++||..|++.|++|+|||+++.+||+|.+.+|+|++.++.....++... ..+..+|+.......+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            358999999999999999999999999999999889999999999999998887766665443 1345667765556788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~  200 (477)
                      +..+..+..+..+.+...+...+++.+++++.+++.+++.+.+.|.+.+|...++.||+||+|||++|..+|..+.+...
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~  164 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDT  164 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCc
Confidence            99999888888888877778888889999999998888988888887763346799999999999998655443333446


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      +++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||+++++++|+
T Consensus       165 v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~  244 (474)
T 1zmd_A          165 IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVT  244 (474)
T ss_dssp             EECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred             EEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEE
Confidence            888888888878899999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             EEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          280 GVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       280 ~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      +++.++++ +.+++.+...++++++++|.|++|+|++||+..+.++++|++++++|+|.||+++||+.|+|||+|||++.
T Consensus       245 ~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~  324 (474)
T 1zmd_A          245 GATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAG  324 (474)
T ss_dssp             EEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSS
T ss_pred             EEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCC
Confidence            99877665 66665433334667899999999999999998765678899998889999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787          359 PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV  438 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (477)
                      +.+++.|..||+.||.||++...++++..+|+++|++|+++++|++|++++..|+++++..+++....++...+++++|+
T Consensus       325 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (474)
T 1zmd_A          325 PMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMV  404 (474)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEE
T ss_pred             CccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEE
Confidence            99999999999999999998766678889999999999999999999999999999999999999888888878888999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++|+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       405 k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  439 (474)
T 1zmd_A          405 KILGQKSTDRVLGAHILGPGAGEMVNEAALALEYG  439 (474)
T ss_dssp             EEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999989999999999999999999999999743

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=5.6e-67  Score=528.23  Aligned_cols=430  Identities=58%  Similarity=0.944  Sum_probs=380.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc-cccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~~  121 (477)
                      ++||+|||||+||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.++.....++.....+..+|+.. ....+++
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            489999999999999999999999999999998899999999999999998877776666554355667765 4456789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      ..+..+.....+.+...+...+++.+++++.+++.+++.+.+.+.+.+|....+.||+||+|||++|..+|..+.+...+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v  161 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV  161 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence            99998888888888777788888889999999988899999999877765568999999999999886544333334468


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHH-HhcCcEEEeCceEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL-EKQKMKFMLKTKVVG  280 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l-~~~gv~~~~~~~v~~  280 (477)
                      ++.+++..+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+|+++.+.+.+.+ +++||+++++++|++
T Consensus       162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~  241 (468)
T 2qae_A          162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVG  241 (468)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEE
T ss_pred             echHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEE
Confidence            8999998888889999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC-CC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-GP  359 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~-~~  359 (477)
                      ++.+++++.+.+.. .+++.+++++|.|++|+|++||+..+.++++|++++++|+|.||+++||+.|+|||+|||++ .+
T Consensus       242 i~~~~~~~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~  320 (468)
T 2qae_A          242 GTNNGDSVSLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGP  320 (468)
T ss_dssp             EEECSSSEEEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSC
T ss_pred             EEEcCCeEEEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCC
Confidence            98876666666542 12233689999999999999999876667889999888999999999999999999999999 89


Q ss_pred             CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      .+++.|..||++||.||++...++++..+|+++|++|+++++|++|++|+..|+++++..+++....++...+++.+|+|
T Consensus       321 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k  400 (468)
T 2qae_A          321 MLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVK  400 (468)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEE
T ss_pred             ccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEE
Confidence            99999999999999999987766788889999999999999999999999999999999999998888888888889999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       401 l~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  434 (468)
T 2qae_A          401 VLVDKATDRILGVHIVCTTAGELIGEACLAMEYG  434 (468)
T ss_dssp             EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9999989999999999999999999999999854

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=3.9e-67  Score=531.05  Aligned_cols=432  Identities=55%  Similarity=0.916  Sum_probs=384.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc-cccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~  120 (477)
                      .++||+|||||+||+++|..|++.|++|+|||+++.+||+|.+.+|+|++.++.....++.....+..+++.. ....++
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN   83 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            4589999999999999999999999999999998899999999999999999888777777665566677765 445678


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEE------EEecEEEEccCCCCCCCCCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTV------VKGKNIIIATGSDVKSLPGI  194 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~------i~~d~lvlAtG~~~~~~~g~  194 (477)
                      +..+..+.......+...+...+++.+++++.++..+.+.+.+.|.+.+|....      +.||+||+|||++|+.+|+.
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~  163 (478)
T 1v59_A           84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGI  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCC
Confidence            888888888888877777778888899999999988888888888876663235      99999999999999878887


Q ss_pred             ccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          195 TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      +..+..+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||++++
T Consensus       164 ~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~  243 (478)
T 1v59_A          164 EIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKL  243 (478)
T ss_dssp             CCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence            65555688999988888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEE--cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          275 KTKVVGVDL--SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       275 ~~~v~~i~~--~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++|++++.  +++.+.+++.+..+++++++++|.|++|+|++||++.+.++++|++++++|+|.||+++||+.|+|||+
T Consensus       244 ~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~  323 (478)
T 1v59_A          244 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVV  323 (478)
T ss_dssp             SEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred             CCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEe
Confidence            999999987  555666666543344567899999999999999998544788899999889999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcC
Q 011787          353 GDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAID  432 (477)
Q Consensus       353 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      |||++.+.+++.|..||+.||+||++...+++|..+|+++|++|+++++|+++++|+..|+++.+..+++....++...+
T Consensus       324 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~  403 (478)
T 1v59_A          324 GDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQ  403 (478)
T ss_dssp             GGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTT
T ss_pred             eccCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCEEEEEEecccchhhhhcC
Confidence            99999999999999999999999998666678899999999999999999999999999999999999999888887777


Q ss_pred             CCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          433 DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       433 ~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++.+++|+++|+++++|+|++++|+++.|+|+.+++||.++
T Consensus       404 ~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~  444 (478)
T 1v59_A          404 DTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYG  444 (478)
T ss_dssp             CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            78899999999889999999999999999999999999854

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=5.5e-67  Score=529.71  Aligned_cols=431  Identities=43%  Similarity=0.670  Sum_probs=380.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      |+.++||+|||||+||+++|..|++.|++|+|||+++.+||+|.+.+|+|++.++.....+... ..+..+++......+
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~-~~~~~~gi~~~~~~~   81 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEV-RHLAANGIKYPEPEL   81 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHH-HHGGGGTCCCCCCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHH-HHHHhCCcccCCCcc
Confidence            3446899999999999999999999999999999988999999999999999888776666555 335567777666678


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCC----------ceEEEEecEEEEccCCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG----------GNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g----------~~~~i~~d~lvlAtG~~~~  189 (477)
                      ++..+..+.......+...+...+++.+++++.++..+++.+.+.+.+.+|          +..+++||+||+|||++|.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence            899999888888888877788888889999999998888888888865433          2257999999999999987


Q ss_pred             CCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                      .+|+++.+. .+++.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus       162 ~~~~i~~~~-~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~g  240 (482)
T 1ojt_A          162 KLPFIPEDP-RIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF  240 (482)
T ss_dssp             CCSSCCCCT-TEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCccC-cEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHHhcC
Confidence            666444333 5888899888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      |+++++++|.+++.+++++.+++.+. .+.++++++|.|++|+|++||++.+.++.+|++++++|+|.||+++||+.|+|
T Consensus       241 V~i~~~~~v~~i~~~~~~~~v~~~~~-~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~I  319 (482)
T 1ojt_A          241 DNIMVNTKTVAVEPKEDGVYVTFEGA-NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHI  319 (482)
T ss_dssp             EEEECSCEEEEEEEETTEEEEEEESS-SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTE
T ss_pred             CEEEECCEEEEEEEcCCeEEEEEecc-CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCE
Confidence            99999999999988777777766521 11145789999999999999998766788899999889999999999999999


Q ss_pred             EEecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccch
Q 011787          350 YAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAK  429 (477)
Q Consensus       350 ya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (477)
                      ||+|||++.+.+++.|..||++||.||++...++++..+|+++|++|+++++|+||++|+..++++.+..+++....++.
T Consensus       320 yA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~  399 (482)
T 1ojt_A          320 YAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAI  399 (482)
T ss_dssp             EECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHH
T ss_pred             EEEEcccCCCccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCCCEEEEEEEcCcchHHh
Confidence            99999999999999999999999999998776678888999999999999999999999999999999999999888888


Q ss_pred             hcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          430 AIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       430 ~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ..+++.+|+|+++|+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       400 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  443 (482)
T 1ojt_A          400 ANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMG  443 (482)
T ss_dssp             HTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             hcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            88888899999999999999999999999999999999999854

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.4e-67  Score=528.12  Aligned_cols=433  Identities=88%  Similarity=1.312  Sum_probs=382.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.++||+|||||+||++||..|++.|++|+|||+++.+||+|.+.+|+|++.++.....++.....+..+++.......+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID   83 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            34689999999999999999999999999999998899999999999999988877766665544355567765555678


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCce
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR  200 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~  200 (477)
                      +..+..+.......+...+...+++.+++++.+++.+++.+.+.|.+.+|....++||+||+|||++|..++..+.+...
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~  163 (470)
T 1dxl_A           84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKK  163 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCccc
Confidence            99998888887777777777778888999999988888888888887666446799999999999988655433333446


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      +++..+...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||++++++++.+
T Consensus       164 v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~  243 (470)
T 1dxl_A          164 IVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVG  243 (470)
T ss_dssp             EECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred             EEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      ++.+++++.+.+.+..+++++++++|.|++|+|++||++.+.++++|++++++|+|.||+++||+.|+|||+|||++.+.
T Consensus       244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~  323 (470)
T 1dxl_A          244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM  323 (470)
T ss_dssp             EECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC
T ss_pred             EEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCCc
Confidence            98776667666653223445789999999999999999876678889999888999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEE
Q 011787          361 LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI  440 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  440 (477)
                      +++.|..||++||.||++...++++..+|+++|++|+++++|+++++|+..|+++.+..+++....++...+++++|+|+
T Consensus       324 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~  403 (470)
T 1dxl_A          324 LAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKI  403 (470)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEE
T ss_pred             cHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEE
Confidence            99999999999999999877667888999999999999999999999999999999999999988888888888899999


Q ss_pred             EEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          441 LAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       441 ~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++|+++++|+|++++|+++.|+|+.+++||.++
T Consensus       404 ~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  436 (470)
T 1dxl_A          404 IAEKETDKILGVHIMAPNAGELIHEAAIALQYD  436 (470)
T ss_dssp             EEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            999989999999999999999999999999754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.6e-66  Score=517.72  Aligned_cols=425  Identities=44%  Similarity=0.735  Sum_probs=376.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++.....++... .+..+++.+.....++.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~   80 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAK-HSEEMGIKAENVTIDFA   80 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHH-TCGGGTEECCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHH-HHHhcCcccCCCccCHH
Confidence            489999999999999999999999999999996 8999999999999998887776665543 45566776655668899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+.....+.+...+...+++.+++++.+++.+++++.+.+.+.+| ..++.||+||+|||++|..++..+.+.. ++
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G-~~~i~~d~lViATGs~p~~~~~~g~~~~-v~  158 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPIELPNFKFSNR-IL  158 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEECCBTTBCCCSS-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCC-cEEEEeCEEEEecCCCCCCCCCCCccce-Ee
Confidence            988888888887878788888889999999998888988888887665 2579999999999999865443332233 78


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      +.++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|++++
T Consensus       159 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  238 (455)
T 1ebd_A          159 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE  238 (455)
T ss_dssp             CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             cHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            88888888778999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                      .+++++.+++..  +++++++++|.|++|+|++|+++.+.++.+|++++++|+|.||+++||+.|+|||+|||++.+.++
T Consensus       239 ~~~~~~~v~~~~--~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~  316 (455)
T 1ebd_A          239 EREDGVTVTYEA--NGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALA  316 (455)
T ss_dssp             EETTEEEEEEEE--TTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCH
T ss_pred             EeCCeEEEEEEe--CCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCcccH
Confidence            877777666542  335678999999999999999987666888999988899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEE
Q 011787          363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA  442 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  442 (477)
                      +.|..||+.||.||++...++++..+|+++|++|+++++|+++++|+..|+++.+..+++....++...+++.+|+|+++
T Consensus       317 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  396 (455)
T 1ebd_A          317 HKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVV  396 (455)
T ss_dssp             HHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEE
Confidence            99999999999999987766788899999999999999999999999999999999999998888888888889999999


Q ss_pred             ECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          443 EKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       443 ~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       397 ~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  427 (455)
T 1ebd_A          397 RKEDGVIIGAQIIGPNASDMIAELGLAIEAG  427 (455)
T ss_dssp             ETTTTEEEEEEEESTTHHHHHHHHHHHHHHT
T ss_pred             ECCCCEEEEEEEeCCCHHHHHHHHHHHHHCC
Confidence            9989999999999999999999999999743

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=8.9e-66  Score=518.08  Aligned_cols=421  Identities=47%  Similarity=0.776  Sum_probs=370.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||++||..|++.|++|+|||++. +||+|.+.+|+|++.++.....++... ....+|+. ....+++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~-~~~~~g~~-~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLK-VAEGFGLK-AKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHH-HHGGGTEE-CCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHH-hHHhcCCC-CCCCcCHH
Confidence            5899999999999999999999999999999966 999999999999998887776665553 34556765 44568899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+..+..+.+...+..++++.+++++.+++.+++.+.+.+.   |  .++.||+||||||++|..+|+++.+ ..++
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~---g--~~~~~d~lViATGs~p~~p~gi~~~-~~v~  156 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG---G--ERYGAKSLILATGSEPLELKGFPFG-EDVW  156 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET---T--EEEEEEEEEECCCEEECCBTTBCCS-SSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc---c--EEEEeCEEEEcCCCCCCCCCCCCCC-CcEE
Confidence            99988888888877777788888999999998888887766553   4  5899999999999998766655432 2578


Q ss_pred             cchhhhcccC-CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          203 SSTGALALNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       203 ~~~~~~~~~~-~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +++++..+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|+++
T Consensus       157 ~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i  236 (464)
T 2eq6_A          157 DSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGY  236 (464)
T ss_dssp             CHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEE
T ss_pred             cHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            8888888877 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML  361 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~  361 (477)
                      +.+++++.+++.+..++...++++|.|++|+|++|++..+.++..|+.++++|+|.||+++||+.|+|||+|||++.+.+
T Consensus       237 ~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~l  316 (464)
T 2eq6_A          237 EKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLL  316 (464)
T ss_dssp             EEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSSCC
T ss_pred             EEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCccc
Confidence            88777776766421113334899999999999999998765678899988889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEE
Q 011787          362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL  441 (477)
Q Consensus       362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  441 (477)
                      ++.|..||+.||.||++...++++. +|++.|++|+++++|+++++++..|+++.+..+++....++...+++.+|+|++
T Consensus       317 ~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~  395 (464)
T 2eq6_A          317 AHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVV  395 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCC-CCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCC-CCeEEECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEE
Confidence            9999999999999999876667788 999999999999999999999999999999999999888888877888999999


Q ss_pred             EECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          442 AEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       442 ~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       396 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  427 (464)
T 2eq6_A          396 GDEETDLLLGVFIVGPQAGELIAEAALALEMG  427 (464)
T ss_dssp             EETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99889999999999999999999999999754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=4.5e-66  Score=521.05  Aligned_cols=426  Identities=38%  Similarity=0.609  Sum_probs=374.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||+++|..|++.|++|+|||++ .+||+|.+.+|+|++.++.....++.....+..+++. ....+++.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~~~~~~~~   80 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYG   80 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-ECCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCccCHH
Confidence            489999999999999999999999999999996 8999999999999998887777666655445556665 44567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+.......+...+...+++.+++++.++...++.+.+.+.+.+|...++.||+||+|||++|..++..+.+.. ++
T Consensus        81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~-~~  159 (464)
T 2a8x_A           81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VV  159 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTT-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCce-EE
Confidence            88887777777777777778888899999998888888888888777644679999999999998865443332223 78


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      +.++...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||++++++++++++
T Consensus       160 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (464)
T 2a8x_A          160 TYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIA  239 (464)
T ss_dssp             CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred             ecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence            88888888888999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                      .+++++.+.+.  .+++.+++++|.|++|+|++||++.+.++++|+.++++|+|.||+++||+.|+|||+|||++.+.++
T Consensus       240 ~~~~~~~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~  317 (464)
T 2a8x_A          240 DGGSQVTVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLA  317 (464)
T ss_dssp             ECSSCEEEEEE--SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSSCSH
T ss_pred             EcCCeEEEEEE--cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCccCH
Confidence            77666666654  1234478999999999999999987666888999988899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcC-CCCC-CCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEE
Q 011787          363 HKAEEDGVACVEFLAG-KHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI  440 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~-~~~~-~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  440 (477)
                      +.|..||++||.||++ ...+ ++|..+|+++|++|+++++|+++++|+..|+++++..+++....++...+++++|+|+
T Consensus       318 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~  397 (464)
T 2a8x_A          318 HVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKL  397 (464)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEE
Confidence            9999999999999998 5555 6788889999999999999999999999999999999999988888888888899999


Q ss_pred             EEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          441 LAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       441 ~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++|+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       398 ~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  430 (464)
T 2a8x_A          398 VADAKHGELLGGHLVGHDVAELLPELTLAQRWD  430 (464)
T ss_dssp             EEETTTTEEEEEEEEETTGGGGHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEEECcCHHHHHHHHHHHHHCC
Confidence            999989999999999999999999999999854

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.1e-65  Score=520.11  Aligned_cols=424  Identities=28%  Similarity=0.469  Sum_probs=372.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.++||+|||||+||++||..|++.|++|+|||+ +.+||+|.+.+|+|++.++.....+... ..+..+++......++
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~-~~~GG~~~~~gc~p~k~l~~~~~~~~~~-~~~~~~g~~~~~~~~~   95 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFM-HDHADYGFPSCEGKFN   95 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHH-TTTTTTTSCCCCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcccccCccchHHHHHHHHHHHHH-HHHHhcCccCCCCccC
Confidence            3468999999999999999999999999999997 5899999999999999988877666544 3456677776667889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC-----CCCc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL-----PGIT  195 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~-----~g~~  195 (477)
                      |..+..+.......+...+...+++.+++++.+.+.+++...+.+. .++  .++.||+||||||++|..+     ||..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g--~~~~~d~lviAtG~~p~~p~~~~i~G~~  172 (478)
T 3dk9_A           96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSG--KKYTAPHILIATGGMPSTPHESQIPGAS  172 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETT--EEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECC--EEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence            9999999999988888888888889999999999999988776666 345  6799999999999988544     3332


Q ss_pred             cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                          .+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++
T Consensus       173 ----~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~  248 (478)
T 3dk9_A          173 ----LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKF  248 (478)
T ss_dssp             ----GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETT
T ss_pred             ----eeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeC
Confidence                4567888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCCe--EEEEEeecCCCc--eEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          276 TKVVGVDLSGDG--VKLTLEPAAGGE--KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       276 ~~v~~i~~~~~~--~~v~~~~~~~~~--~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      +.+++++.++++  +.+.+.+...+.  +.++++|.|++|+|++|++..+.++.+|++++++|+|.||+++||++|+|||
T Consensus       249 ~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA  328 (478)
T 3dk9_A          249 SQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYA  328 (478)
T ss_dssp             EEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEE
T ss_pred             CEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEE
Confidence            999999876555  455554322222  3789999999999999999877688899999999999999999999999999


Q ss_pred             ecccCCCCCchhHHHHHHHHHHHHHcCC--CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcC--CCEEEEEEecCcccc
Q 011787          352 IGDVIPGPMLAHKAEEDGVACVEFLAGK--HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELG--VEYRVGKFPFLANSR  427 (477)
Q Consensus       352 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~~~~~~~~~  427 (477)
                      +|||++.|.+++.|..||++||+||++.  ....++..+|+++|++|+++++|+||+||++.+  .++.+...++....+
T Consensus       329 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~  408 (478)
T 3dk9_A          329 VGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYH  408 (478)
T ss_dssp             CGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGG
T ss_pred             EEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEEeecCcchh
Confidence            9999999999999999999999999986  345688999999999999999999999999875  567777778888888


Q ss_pred             chhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          428 AKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       428 ~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +...++++|++|+++|+++++|||+|++|++|.|+|+.+++||.++
T Consensus       409 ~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  454 (478)
T 3dk9_A          409 AVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMG  454 (478)
T ss_dssp             GGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            8777788999999999999999999999999999999999999854

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.5e-65  Score=516.91  Aligned_cols=417  Identities=26%  Similarity=0.457  Sum_probs=366.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+|||||+||++||..|++.|++|+||||++.+||+|.+.+|+|++.++.....+....... .     ....++|
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~-~-----~~~~~~~   76 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIA-N-----VKIPLDF   76 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH-C-----SCCCCCH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcc-c-----CCCCcCH
Confidence            358999999999999999999999999999998899999999999999999888877766554332 1     2346789


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787          122 PAMMAQKDKAVSNLT--RGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK  199 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~  199 (477)
                      ..+..+.....+ +.  ..+...+++.+++++.+++.+++.+.+.|.+.+|...++.||+||||||++|..++..+.+  
T Consensus        77 ~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~--  153 (466)
T 3l8k_A           77 STVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE--  153 (466)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG--
T ss_pred             HHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc--
Confidence            999888888777 76  7777888889999999999999999999998887333499999999999988544322222  


Q ss_pred             eEecchhhh----cccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCC-CHHHHHHHHHHHHhcCcEEEe
Q 011787          200 RIVSSTGAL----ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       200 ~~~~~~~~~----~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~-~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      .+++..++.    .+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+ ++++.+.+.+.++   |++++
T Consensus       154 ~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~  230 (466)
T 3l8k_A          154 YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKF  230 (466)
T ss_dssp             GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEEC
T ss_pred             ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEE
Confidence            578888888    666679999999999999999999999999999999999999988 9999999988886   99999


Q ss_pred             CceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEec
Q 011787          275 KTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG  353 (477)
Q Consensus       275 ~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~G  353 (477)
                      ++++++++.++ +++.+.+.+ .+++..++++|.|++|+|++|++. +.++..|++++++| |.||+++||++|+|||+|
T Consensus       231 ~~~v~~i~~~~~~~v~v~~~~-~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~G  307 (466)
T 3l8k_A          231 NSPVTEVKKIKDDEYEVIYST-KDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKTNIPNVFATG  307 (466)
T ss_dssp             SCCEEEEEEEETTEEEEEECC-TTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBCSSTTEEECG
T ss_pred             CCEEEEEEEcCCCcEEEEEEe-cCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccCCCCCEEEEE
Confidence            99999998876 777776642 123345899999999999999998 65788999999989 999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHcCC---CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh
Q 011787          354 DVIPGPMLAHKAEEDGVACVEFLAGK---HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA  430 (477)
Q Consensus       354 D~~~~~~~~~~A~~~g~~aa~~i~~~---~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (477)
                      ||++.|.+++.|..||++||.||++.   ....++..+|+++|++|+++++|+||++|+..|+++++..+++....++..
T Consensus       308 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~  387 (466)
T 3l8k_A          308 DANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQI  387 (466)
T ss_dssp             GGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHHH
T ss_pred             ecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCCCEEEEEEEcccChhhee
Confidence            99999999999999999999999975   345688899999999999999999999999999999999999999999888


Q ss_pred             cCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       431 ~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      .++++||+|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       388 ~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  430 (466)
T 3l8k_A          388 YGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYG  430 (466)
T ss_dssp             HTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCc
Confidence            8888999999999999999999999999999999999999854

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=7.4e-66  Score=521.77  Aligned_cols=423  Identities=26%  Similarity=0.409  Sum_probs=370.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +|||+||||||||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++.....++.... +..+|+......+++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~   85 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARVGCMPSKLLIAAADASYHASQ-TDLFGIQVDRISVNGK   85 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHHSHHHHHHHHHHHHHHHHHTC-GGGGTEECSEEEECHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccccChhcCHHHHHHHHHHHHHhh-hhhcCcCCCCCccCHH
Confidence            589999999999999999999999999999995 69999999999999999888877665543 4667776555678898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      .+..+.......+...+....... +++++.+.+.+.+...+.+  .++  .++.||+||||||++|..++..+.....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~--~~~--~~~~~d~lViATGs~p~~p~~~~~~~~~v  161 (492)
T 3ic9_A           86 AVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQV--DDH--SQVIAKRIVIATGSRPNYPEFLAAAGSRL  161 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEE--TTT--EEEEEEEEEECCCEECCCCHHHHTTGGGE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEE--cCC--cEEEeCEEEEccCCCCcCCCCCCccCCcE
Confidence            888887777666655554444443 5778999999988886665  355  78999999999999987655333345678


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      ++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.|++. |++++++.++++
T Consensus       162 ~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i  240 (492)
T 3ic9_A          162 LTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVIST  240 (492)
T ss_dssp             ECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEE
T ss_pred             EcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEE
Confidence            9999999888899999999999999999999999999999999999999999999999999999988 999999999999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecC-CCCCCCCCCeEEecccCCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~vya~GD~~~~~~  360 (477)
                      +.+++++.+++.+ .+++..++++|.|++|+|++|+++.+.++.+|++++++|+|.|| +++||+.|+|||+|||++.+.
T Consensus       241 ~~~~~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~  319 (492)
T 3ic9_A          241 IEKEDAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT  319 (492)
T ss_dssp             EECSSSEEEEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSC
T ss_pred             EEcCCEEEEEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCc
Confidence            9887777777642 22333789999999999999999987788999999999999999 899999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCC--CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-----CCCEEEEEEecCccccchhcCC
Q 011787          361 LAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-----GVEYRVGKFPFLANSRAKAIDD  433 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  433 (477)
                      +++.|..||++||.||++..  ...++..+|+++|++|+++++|+||+||++.     +++|.+..+++....++.+.++
T Consensus       320 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~  399 (492)
T 3ic9_A          320 LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGK  399 (492)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCC
Confidence            99999999999999999732  3467888999999999999999999999988     3789999999999999998888


Q ss_pred             CceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          434 AEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       434 ~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +.+++|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       400 ~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  439 (492)
T 3ic9_A          400 NKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQ  439 (492)
T ss_dssp             CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            8999999999999999999999999999999999999854

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=3.9e-65  Score=519.47  Aligned_cols=432  Identities=28%  Similarity=0.459  Sum_probs=365.1

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC--------CCCceeeccCccCchhhhhhhHHHHHHHhhhhhC
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH  110 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~--------~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~  110 (477)
                      +++.+|||+||||||||++||..|++.|++|+|||+++        .+||+|.+.+|+|++.++.....+... ..+..+
T Consensus        28 ~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~-~~~~~~  106 (519)
T 3qfa_A           28 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQAL-QDSRNY  106 (519)
T ss_dssp             CSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHH-HHHHHT
T ss_pred             CcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHH-HHHHhc
Confidence            34557999999999999999999999999999999854        799999999999999887776655543 445677


Q ss_pred             Cccccc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          111 GVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       111 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      |+.... ..++|..+..+.+.....+...+...++..+++++.+.+.+++++.+.|.+.+|+..++.||+||||||++|.
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~  186 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR  186 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence            877643 5789999999999988888888888888899999999999999999999888775568999999999999886


Q ss_pred             CCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                      .++..+ ....+++.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++. .+++.+|+++.+.+.+.|++.|
T Consensus       187 ~p~i~G-~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~G  264 (519)
T 3qfa_A          187 YLGIPG-DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHG  264 (519)
T ss_dssp             CCCCTT-HHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCCCCC-ccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCC
Confidence            443211 12346788888888888999999999999999999999999999999984 6888999999999999999999


Q ss_pred             cEEEeCceEEEEEEcC----CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeec-CCCCeecCCCCCC
Q 011787          270 MKFMLKTKVVGVDLSG----DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFAT  344 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~----~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~g~i~vd~~l~t  344 (477)
                      |++++++.++++...+    +.+.+++.....+...++++|.|++|+|++||++.+.++.+|++++ ++|+|.||+++||
T Consensus       265 V~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T  344 (519)
T 3qfa_A          265 IKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT  344 (519)
T ss_dssp             CEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC
T ss_pred             CEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc
Confidence            9999999888876533    4455555432222224689999999999999999877888999998 5799999999999


Q ss_pred             CCCCeEEecccC-CCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcC--CCEEEEEE
Q 011787          345 NIPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELG--VEYRVGKF  420 (477)
Q Consensus       345 ~~~~vya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~~  420 (477)
                      ++|+|||+|||+ +.+.+++.|..||++||+||++.. ...++..+|+++|++|+++++|+||+||++.+  ..+.+...
T Consensus       345 s~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~  424 (519)
T 3qfa_A          345 NVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHS  424 (519)
T ss_dssp             SSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEE
T ss_pred             CCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEEEEEE
Confidence            999999999998 678899999999999999999765 34678899999999999999999999998762  35776666


Q ss_pred             ecCccccchhc-CCCceEEEEEEEC-CCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          421 PFLANSRAKAI-DDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       421 ~~~~~~~~~~~-~~~~~~~k~~~~~-~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++....++... .++++|+|+++|+ +|++|||+|++|++|.|+|+.+++||.++
T Consensus       425 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~  479 (519)
T 3qfa_A          425 YFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG  479 (519)
T ss_dssp             EECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             eccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            66544444333 2468999999997 58999999999999999999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=2e-65  Score=515.94  Aligned_cols=419  Identities=26%  Similarity=0.422  Sum_probs=372.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+|||||++|++||..|++.|++|+|||+ +.+||+|.+.+|+|++.++.......... .+..+++......++|
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~   81 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFE-DAAGFGWTVGESRFDW   81 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTEEECCCEECH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHH-HHHhcCcccCCCCcCH
Confidence            368999999999999999999999999999999 88999999999999999888777666554 3567777766678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC-CCCCCccCCce
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-SLPGITIDEKR  200 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~-~~~g~~~~~~~  200 (477)
                      ..+..+.......+...+...+++.+++++.+.+.+++...+.+. .++  ..+.||++|+|||++|. .++..+.  ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~-~~~--~~~~~d~lviAtG~~p~~~p~i~G~--~~  156 (463)
T 4dna_A           82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLL-ASG--KTVTAERIVIAVGGHPSPHDALPGH--EL  156 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEET-TTT--EEEEEEEEEECCCEEECCCTTSTTG--GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEe-cCC--eEEEeCEEEEecCCCcccCCCCCCc--cc
Confidence            999999998888888888888888899999999999988766553 344  78999999999999887 4332111  24


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      +++.+++..+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+.+.+++.||++++++.|++
T Consensus       157 ~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~  236 (463)
T 4dna_A          157 CITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQS  236 (463)
T ss_dssp             CBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred             cccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence            67788888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCe-EEEE-EeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          281 VDLSGDG-VKLT-LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       281 i~~~~~~-~~v~-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      ++.++++ +.++ +.     +++ +++|.|++|+|++|++..+.++..|++++++|+|.||+++||++|+|||+|||++.
T Consensus       237 i~~~~~~~~~v~~~~-----~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~  310 (463)
T 4dna_A          237 VSADADGRRVATTMK-----HGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDR  310 (463)
T ss_dssp             EEECTTSCEEEEESS-----SCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSS
T ss_pred             EEEcCCCEEEEEEcC-----CCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCC
Confidence            9887554 4555 43     445 99999999999999999877788999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceE
Q 011787          359 PMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI  437 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (477)
                      +.+++.|..||+++|+||++.. ...++..+|+++|++|+++++|+||+||++.|.++.+..+++....++...++++++
T Consensus       311 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (463)
T 4dna_A          311 VQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTI  390 (463)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEE
T ss_pred             CCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEE
Confidence            9999999999999999999864 346788999999999999999999999999999999999999988888887888999


Q ss_pred             EEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          438 VKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       438 ~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       391 ~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  426 (463)
T 4dna_A          391 MKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAG  426 (463)
T ss_dssp             EEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999854

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=4.2e-65  Score=518.11  Aligned_cols=423  Identities=27%  Similarity=0.463  Sum_probs=372.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc--cccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK--FSSV  117 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~--~~~~  117 (477)
                      ++||+|||||+||++||.+|++.   |++|+|||+++ +||+|.+.+|+|++.++.....++... .+..+|+.  ....
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~-~~~~~g~~~~~~~~   79 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELR-RAPHLGFHIDFDDA   79 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHT-TTTTTTBC------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHH-HHHhCCCccccCCC
Confidence            48999999999999999999999   99999999977 999999999999998887776665433 34556665  3445


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC------CEEEEEecCCceEEEEecEEEEccCCCCCCC
Q 011787          118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP------SEVSVDTIEGGNTVVKGKNIIIATGSDVKSL  191 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~  191 (477)
                      ..++..+..+..+....+...+..++++.+++++.+++.+++.      +.+.|.+.+|+...+.||+||+|||++|..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p  159 (499)
T 1xdi_A           80 KISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  159 (499)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            6789999988888888888888888888999999999888887      6677777666334799999999999988654


Q ss_pred             CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       192 ~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      +..+.+...+++..+...+...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+.+.+++.||+
T Consensus       160 ~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~  239 (499)
T 1xdi_A          160 PSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVR  239 (499)
T ss_dssp             GGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCE
Confidence            43223344588888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      ++++++|++++.+++++.+.+.     +++++++|.||+|+|++||++.+.++++|++++++|+|.||+++||+.|+|||
T Consensus       240 i~~~~~V~~i~~~~~~v~v~~~-----~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA  314 (499)
T 1xdi_A          240 LFKNARAASVTRTGAGVLVTMT-----DGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYA  314 (499)
T ss_dssp             EETTCCEEEEEECSSSEEEEET-----TSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEE
T ss_pred             EEeCCEEEEEEEeCCEEEEEEC-----CCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEE
Confidence            9999999999887666666543     55789999999999999999876678889999988999999999999999999


Q ss_pred             ecccCCCCCchhHHHHHHHHHHHHHcCC-CCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh
Q 011787          352 IGDVIPGPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA  430 (477)
Q Consensus       352 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (477)
                      +|||++.+.+++.|..||++||+||++. ..++++..+|+++|++|+++++|+++++|+..|+++.+..+++....++..
T Consensus       315 ~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~  394 (499)
T 1xdi_A          315 AGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKM  394 (499)
T ss_dssp             CSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHH
T ss_pred             EeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCCCEEEEEEecCcccceee
Confidence            9999999999999999999999999987 456778889999999999999999999999999999999999998888888


Q ss_pred             cCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcC
Q 011787          431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHD  472 (477)
Q Consensus       431 ~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~  472 (477)
                      .+++.+|+|+++|+++++|+|++++|+++.|+|+.+++||.+
T Consensus       395 ~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~  436 (499)
T 1xdi_A          395 SEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQN  436 (499)
T ss_dssp             TTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHC
Confidence            778889999999988999999999999999999999999974

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=8.3e-65  Score=514.10  Aligned_cols=426  Identities=28%  Similarity=0.456  Sum_probs=368.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH-CCCeEEEEe--------cCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH  110 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie--------~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~  110 (477)
                      |+.++||+|||||+||++||.+|++ .|++|+|||        +...+||+|.+.+|+|++.++.....++... ....+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~-~~~~~   82 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLR-ESAGF   82 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHH-HHHTT
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHh-HHHhc
Confidence            4446899999999999999999999 999999999        3578999999999999999887776665544 35566


Q ss_pred             Ccccccc--ccChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCC----ceEEEEecEEEEc
Q 011787          111 GVKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEG----GNTVVKGKNIIIA  183 (477)
Q Consensus       111 g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g----~~~~i~~d~lvlA  183 (477)
                      ++.....  .++|..+..+..+....+...+...+++. +++++.+++.+++.+.+.+...++    ....+.||+||||
T Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViA  162 (495)
T 2wpf_A           83 GWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLA  162 (495)
T ss_dssp             TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEe
Confidence            7765544  68999999999988888888888888888 999999999999888777652111    0368999999999


Q ss_pred             cCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcCCCCCHHHHHH
Q 011787          184 TGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQ  260 (477)
Q Consensus       184 tG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~  260 (477)
                      ||++|..++..+.  ..+++++++..+...+++++|||+|++|+|+|..|++.   |.+|+++++.+++++.+++++.+.
T Consensus       163 TGs~p~~p~i~G~--~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~  240 (495)
T 2wpf_A          163 TGSWPQMPAIPGI--EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREE  240 (495)
T ss_dssp             CCEEECCCCCTTG--GGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHH
T ss_pred             CCCCcCCCCCCCc--cccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHH
Confidence            9998864331111  24678888888888899999999999999999999999   999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecC
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN  339 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd  339 (477)
                      +.+.++++||+++++++|++++.+++ .+.+++.     +++++++|.||+|+|++||++.+.++.+|++++++|+|.||
T Consensus       241 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~-----~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd  315 (495)
T 2wpf_A          241 VTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFE-----SGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVD  315 (495)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEET-----TSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEEC-----CCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEEC
Confidence            99999999999999999999987654 3566654     45689999999999999999865578889999988999999


Q ss_pred             CCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEE
Q 011787          340 ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVG  418 (477)
Q Consensus       340 ~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  418 (477)
                      +++||+.|+|||+|||++.+.+++.|..||++||.||++.. ...++..+|+++|++|+++++|++|++++..+.++.+.
T Consensus       316 ~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~v~  395 (495)
T 2wpf_A          316 EFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVY  395 (495)
T ss_dssp             TTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHHHSSEEEEE
T ss_pred             CCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEE
Confidence            99999999999999999988899999999999999999853 44678889999999999999999999998888788888


Q ss_pred             EEecCccccchhcCCCceE-EEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          419 KFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ..++....++...+++.+| +|+++|+++++|||+|++|+++.|+|+.+++||.++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  451 (495)
T 2wpf_A          396 MSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLN  451 (495)
T ss_dssp             EEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             EEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            8888877777766678899 999999999999999999999999999999999754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=9.5e-65  Score=514.12  Aligned_cols=430  Identities=29%  Similarity=0.410  Sum_probs=365.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec--------CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK--------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK  113 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~--------~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~  113 (477)
                      .+|||+||||||||++||..|++.|++|+|||+        ...+||+|.+.+|+|++.++......... .....+|+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~-~~~~~~g~~   83 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMI-RDAHHYGWE   83 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHH-HHHHHTTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHH-HHHHhcCcc
Confidence            358999999999999999999999999999997        46799999999999999887777665544 335677876


Q ss_pred             cc-ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCC
Q 011787          114 FS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP  192 (477)
Q Consensus       114 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~  192 (477)
                      .. ...++|..+..+.......+...+...+++.+++++.+.+.+++++.+.+.+.+|...++.||+||||||++|..++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~  163 (488)
T 3dgz_A           84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPT  163 (488)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCC
Confidence            65 45789999999999988888888888888899999999999999999999888776678999999999999886443


Q ss_pred             CCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          193 GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       193 g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      .++......++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++. .+++.+|+++.+.+.+.++++||++
T Consensus       164 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~~  242 (488)
T 3dgz_A          164 QVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQF  242 (488)
T ss_dssp             SCBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCEE
Confidence            122112245678888888888999999999999999999999999999999986 4788899999999999999999999


Q ss_pred             EeCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeec-CCCCeecCCCCCCCCCCeE
Q 011787          273 MLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       273 ~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~g~i~vd~~l~t~~~~vy  350 (477)
                      ++++.+.+++.. ++.+.+++.+..++...++++|.|++|+|++|+++.+.++..|+.++ ++|+|.||+++||++|+||
T Consensus       243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~Iy  322 (488)
T 3dgz_A          243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIY  322 (488)
T ss_dssp             EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEE
T ss_pred             EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEE
Confidence            999999999874 44566766543333334689999999999999999877788999998 7899999999999999999


Q ss_pred             EecccC-CCCCchhHHHHHHHHHHHHHcCCCC-CCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCccc
Q 011787          351 AIGDVI-PGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANS  426 (477)
Q Consensus       351 a~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~  426 (477)
                      |+|||+ +.|.+++.|..||++||+||++... ..++..+|+++|++|+++++|+||+||++. + ..+.+...++....
T Consensus       323 A~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~  402 (488)
T 3dgz_A          323 AIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLE  402 (488)
T ss_dssp             ECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCHH
T ss_pred             EeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEEccccchh
Confidence            999998 6788999999999999999998653 467889999999999999999999999875 3 45777665555443


Q ss_pred             cchhc-CCCceEEEEEEE-CCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          427 RAKAI-DDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       427 ~~~~~-~~~~~~~k~~~~-~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +.... ++++|++|+++| ++|++|||+|++|++|.|+|+.+++||.++
T Consensus       403 ~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  451 (488)
T 3dgz_A          403 FTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCG  451 (488)
T ss_dssp             HHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             hhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            33222 236899999999 589999999999999999999999999854

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=7.2e-65  Score=514.45  Aligned_cols=420  Identities=25%  Similarity=0.432  Sum_probs=375.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+|||||+||++||..|++.|++|+|||+ +.+||+|.+.+|+|++.++.......... .+..+++......++|
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~-~~~~~g~~~~~~~~~~  102 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFS-KSIGFGWKYADPIFNW  102 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-HHGGGTBCCCCCEECH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHH-HHHhCCcccCCCccCH
Confidence            468999999999999999999999999999999 78999999999999999888877766554 3567788776678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC-CCCCCccCCce
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-SLPGITIDEKR  200 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~-~~~g~~~~~~~  200 (477)
                      ..+..+.......+...+...+.+.+++++.+.+.+++...+.+. .++  ..+.||++|||||+.|. .++..+  ...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~-~~~--~~~~~d~lviAtG~~p~~~p~i~G--~~~  177 (484)
T 3o0h_A          103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELS-VTG--ERISAEKILIATGAKIVSNSAIKG--SDL  177 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TTC--CEEEEEEEEECCCEEECCC--CBT--GGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEe-cCC--eEEEeCEEEEccCCCcccCCCCCC--ccc
Confidence            999999999888888888888999999999999999998876664 244  68999999999999886 332211  124


Q ss_pred             EecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      +++.+++..+...+++++|||+|++|+|+|..+++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++++|++
T Consensus       178 ~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~  257 (484)
T 3o0h_A          178 CLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQ  257 (484)
T ss_dssp             SBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEE
T ss_pred             cccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence            67778888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      ++.+++++.+++.     +++++++|.||+|+|++|+...+.++..|++++++|+|.||+++||++|+|||+|||++.+.
T Consensus       258 i~~~~~~v~v~~~-----~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~  332 (484)
T 3o0h_A          258 VQSTENCYNVVLT-----NGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQ  332 (484)
T ss_dssp             EEECSSSEEEEET-----TSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSCC
T ss_pred             EEeeCCEEEEEEC-----CCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCCc
Confidence            9988777777764     45689999999999999999987778889999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEE
Q 011787          361 LAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK  439 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  439 (477)
                      +++.|..||+++|+||++.. ...++..+|+++|++|+++++|+||++|++.|.++.+..+++....++...+++.+++|
T Consensus       333 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k  412 (484)
T 3o0h_A          333 LTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMK  412 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEE
T ss_pred             CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEE
Confidence            99999999999999999864 34688899999999999999999999999999999999999998888887788899999


Q ss_pred             EEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          440 ILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       440 ~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +++|+++++|||+|++|+++.|+|+.+++||.++
T Consensus       413 ~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  446 (484)
T 3o0h_A          413 LVVDGESRIVVGAHVLGENAGEIAQLIGISLKGK  446 (484)
T ss_dssp             EEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999854

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-64  Score=509.60  Aligned_cols=422  Identities=29%  Similarity=0.491  Sum_probs=363.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc-----
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-----  114 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~-----  114 (477)
                      ++.++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++.......... ....+++..     
T Consensus         8 ~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~-~~~~~g~~~~~~~~   85 (479)
T 2hqm_A            8 NTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVS-HANEYGLYQNLPLD   85 (479)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHT-TTTTTTBSTTSCCS
T ss_pred             ccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHH-hHHhcCcccccccc
Confidence            345689999999999999999999999999999996 7999999999999998876665544433 334455543     


Q ss_pred             c-ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--
Q 011787          115 S-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--  191 (477)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--  191 (477)
                      . ...++|..+..+.......+...+...+++.+++++.+++.+++++.+.+.+.+|...++.||+||||||++|..+  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~  165 (479)
T 2hqm_A           86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN  165 (479)
T ss_dssp             GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence            2 3467899998888888888888888888889999999999899988888887777444899999999999988544  


Q ss_pred             -CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787          192 -PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       192 -~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                       |+.    ..+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||
T Consensus       166 i~g~----~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv  241 (479)
T 2hqm_A          166 IPGF----ELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGI  241 (479)
T ss_dssp             STTG----GGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTC
T ss_pred             CCCc----ccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCe
Confidence             333    235677888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCceEEEEEEcCCe--EEEEEeecCCCce-EEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCC
Q 011787          271 KFMLKTKVVGVDLSGDG--VKLTLEPAAGGEK-TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP  347 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~--~~v~~~~~~~~~~-~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~  347 (477)
                      +++++++|++++.++++  +.+++.     ++ +++++|.|++|+|++||+ .+.++..|++++++|+|.||+++||+.|
T Consensus       242 ~i~~~~~v~~i~~~~~~~~~~v~~~-----~G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd~~~~t~~~  315 (479)
T 2hqm_A          242 NVHKLSKIVKVEKNVETDKLKIHMN-----DSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVP  315 (479)
T ss_dssp             EEECSCCEEEEEECC-CCCEEEEET-----TSCEEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCCTTCBCSST
T ss_pred             EEEeCCEEEEEEEcCCCcEEEEEEC-----CCcEEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeECCCCccCCC
Confidence            99999999999876544  566654     44 689999999999999999 4446888999998999999999999999


Q ss_pred             CeEEecccCCCCCchhHHHHHHHHHHHHHcCCC----CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEe
Q 011787          348 GVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH----GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFP  421 (477)
Q Consensus       348 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~  421 (477)
                      +|||+|||++.+.+++.|..||++||.||++..    ...++..+|+.+|++|+++++|+++++++.. + .++++...+
T Consensus       316 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~~~~~~~  395 (479)
T 2hqm_A          316 NIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSK  395 (479)
T ss_dssp             TEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEE
T ss_pred             CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcEEEEEEe
Confidence            999999999889999999999999999999753    3457778999999999999999999999876 4 358888888


Q ss_pred             cCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       422 ~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +....++...+++.+++|+++|+++++|||+|++|+++.|+|+.+++||.++
T Consensus       396 ~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  447 (479)
T 2hqm_A          396 FTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMG  447 (479)
T ss_dssp             ECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            8888887766778899999999999999999999999999999999999854

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=2.7e-64  Score=510.12  Aligned_cols=424  Identities=28%  Similarity=0.429  Sum_probs=368.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH-CCCeEEEEe--------cCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie--------~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      .++||+|||||+||++||.+|++ .|++|+|||        +...+||+|.+.+|+|++.++.....++... ....+++
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~~~~g~   80 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR-ESAGFGW   80 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHH-HHHhcCc
Confidence            35899999999999999999999 999999999        3578999999999999999888777666554 3556677


Q ss_pred             ccccc--ccChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEe---cCCc-eEEEEecEEEEccC
Q 011787          113 KFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDT---IEGG-NTVVKGKNIIIATG  185 (477)
Q Consensus       113 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~---~~g~-~~~i~~d~lvlAtG  185 (477)
                      .....  .++|..+..+..+....+...+...+++. +++++.+++.+++++.+.+..   .+|. ...+.||+||||||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtG  160 (490)
T 1fec_A           81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG  160 (490)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence            65444  68999999999998888888888888888 999999999999988777764   2442 26799999999999


Q ss_pred             CCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcCCCCCHHHHHHHH
Q 011787          186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQ  262 (477)
Q Consensus       186 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~  262 (477)
                      ++|..++..+.  ..+++++++..+...+++++|||+|++|+|+|..|++.   |.+|+++++.+++++.+++++.+.+.
T Consensus       161 s~p~~p~i~g~--~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~  238 (490)
T 1fec_A          161 SWPQHLGIEGD--DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLT  238 (490)
T ss_dssp             EEECCCCSBTG--GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHH
T ss_pred             CCCCCCCCCCc--cceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHH
Confidence            98864432111  24678888888888899999999999999999999999   99999999999999999999999999


Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER  341 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~  341 (477)
                      +.+++.||+++++++|++++.+++ .+.+++.     +++++++|.||+|+|++||++.+.++.+|++++++|+|.||++
T Consensus       239 ~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~-----~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~  313 (490)
T 1fec_A          239 EQLRANGINVRTHENPAKVTKNADGTRHVVFE-----SGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAY  313 (490)
T ss_dssp             HHHHHTTEEEEETCCEEEEEECTTSCEEEEET-----TSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEC-----CCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCC
Confidence            999999999999999999987654 4566654     4458999999999999999986557888999998899999999


Q ss_pred             CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEE
Q 011787          342 FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF  420 (477)
Q Consensus       342 l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  420 (477)
                      +||+.|+|||+|||++.+.+++.|..||++||.||++.. ...++..+|+++|++|+++++|++|++++..+.++.+...
T Consensus       314 ~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~~~~~~~~  393 (490)
T 1fec_A          314 SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYES  393 (490)
T ss_dssp             CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEE
T ss_pred             CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhcCCCEEEEEe
Confidence            999999999999999988999999999999999999853 4467888999999999999999999999888878888888


Q ss_pred             ecCccccchhcCCCceEE-EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          421 PFLANSRAKAIDDAEGIV-KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~-k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ++....++....++.+|+ |+++|+++++|||+|++|+++.|+|+.+++||.++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  447 (490)
T 1fec_A          394 SFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMG  447 (490)
T ss_dssp             EECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             ecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            887777766666788999 99999999999999999999999999999999754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=6.7e-65  Score=509.70  Aligned_cols=417  Identities=29%  Similarity=0.495  Sum_probs=364.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++...............+++......++|
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   81 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            4689999999999999999999999999999996 899999999999999988777666555424455666555567899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEK  199 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~~  199 (477)
                      ..+..+.......+...+...+.+.+++++.+++.+++...+.+   ++  ..+.||+||||||++|..+  |+.    .
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~p~i~g~----~  152 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPSHPDIPGV----E  152 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEECCCCSTTG----G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE---CC--EEEEeCEEEECCCCCCCCCCCCCc----c
Confidence            99999988888888888888888899999999888888876555   45  6899999999999988543  333    2


Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .+++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++++|+
T Consensus       153 ~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~  232 (450)
T 1ges_A          153 YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPK  232 (450)
T ss_dssp             GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred             ceecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence            46677888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          280 GVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       280 ~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      +++.++++ +.+++.     +++++++|.|++|+|++||++.+.++.+|++++++|+|.||+++||++|+|||+|||++.
T Consensus       233 ~i~~~~~~~~~v~~~-----~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~  307 (450)
T 1ges_A          233 AVVKNTDGSLTLELE-----DGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA  307 (450)
T ss_dssp             EEEECTTSCEEEEET-----TSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTS
T ss_pred             EEEEeCCcEEEEEEC-----CCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCC
Confidence            99876543 566654     456899999999999999998655688899999889999999999999999999999988


Q ss_pred             CCchhHHHHHHHHHHHHHcCCC-CC-CCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCccccchhcCCC
Q 011787          359 PMLAHKAEEDGVACVEFLAGKH-GH-VDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAKAIDDA  434 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~-~~-~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~  434 (477)
                      +.+++.|..||+.+|.||++.. .. .++..+|+++|++|+++++|+++++++.. | .++++...++....++...+++
T Consensus       308 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  387 (450)
T 1ges_A          308 VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQ  387 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCC
T ss_pred             CccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCC
Confidence            9999999999999999999854 33 57888999999999999999999999887 5 6788888888877777666677


Q ss_pred             ceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          435 EGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       435 ~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      .+|+|+++|+++++|+|+|++|+++.|+|+.+++||.++
T Consensus       388 ~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  426 (450)
T 1ges_A          388 PCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMG  426 (450)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            899999999999999999999999999999999999754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=5.9e-64  Score=506.02  Aligned_cols=424  Identities=32%  Similarity=0.499  Sum_probs=365.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhC-Ccccccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH-GVKFSSVEV  119 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~  119 (477)
                      +.++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++.....++.... ...+ |+.......
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~-~~~~~g~~~~~~~~   79 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRE-SPFDGGIAATVPTI   79 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHC-CTTTTTSCCCCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhh-hhhcCCccCCCCcc
Confidence            45689999999999999999999999999999996 89999999999999988877665544332 2233 454444567


Q ss_pred             ChHHHHHHHHHHHHHHHH-HHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccC
Q 011787          120 DLPAMMAQKDKAVSNLTR-GIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID  197 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~  197 (477)
                      ++..+..+..+....+.. .+..++++. +++++.+++.+++.+.+.|.+.+|+...+.||+||||||++|..++..+.+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~  159 (467)
T 1zk7_A           80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK  159 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred             CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCC
Confidence            788888777666555543 345667777 999999999999999999988777556899999999999988544322223


Q ss_pred             CceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      ...+++.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++ +++++.+.+.+.+++.||+++++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~  238 (467)
T 1zk7_A          160 ESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQ  238 (467)
T ss_dssp             TSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCC
T ss_pred             cCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCE
Confidence            345678888888888899999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      |++++.+++.+.+.+.      +.++++|.||+|+|++|++..+.++..|++++++|+|.||+++||+.|+|||+|||+.
T Consensus       239 v~~i~~~~~~~~v~~~------~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~  312 (467)
T 1zk7_A          239 ASQVAHMDGEFVLTTT------HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTD  312 (467)
T ss_dssp             EEEEEEETTEEEEEET------TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTBS
T ss_pred             EEEEEEeCCEEEEEEC------CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccCC
Confidence            9999877666555542      3589999999999999999876577889999888999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceE
Q 011787          358 GPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI  437 (477)
Q Consensus       358 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (477)
                      .|.+++.|..||+.+|.||++...++++..+|++.|++|+++++|+++++++..|+++.+..+++....++...+++.+|
T Consensus       313 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  392 (467)
T 1zk7_A          313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF  392 (467)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCE
T ss_pred             CcccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCcEE
Confidence            99999999999999999999876567788899999999999999999999999999999999998888887776778899


Q ss_pred             EEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          438 VKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       438 ~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +|+++|+++++|+|++++|+++.|+|+.+++||.++
T Consensus       393 ~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~  428 (467)
T 1zk7_A          393 IKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNR  428 (467)
T ss_dssp             EEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            999999989999999999999999999999999854

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=2.1e-64  Score=507.70  Aligned_cols=421  Identities=50%  Similarity=0.831  Sum_probs=375.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.++.....++....  ..+++.......++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~--~~~g~~~~~~~~~~~   78 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK--GLLGAKVKGVELDLP   78 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH--CCTTEEECCEEECHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh--hcCCcccCCCccCHH
Confidence            379999999999999999999999999999998899999999999999998887776666543  556776555678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+.....+.+...+...+++.+++++.+++.+++++.+.+.+ +|  .++.||+||+|||++|..+|..+.+...++
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g--~~~~~d~lviAtG~~p~~~~~~g~~~~~v~  155 (455)
T 2yqu_A           79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TG--EELEARYILIATGSAPLIPPWAQVDYERVV  155 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TC--CEEEEEEEEECCCEEECCCTTBCCCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CC--EEEEecEEEECCCCCCCCCCCCCCCcCcEe
Confidence            998888888877777777788888999999998888888888876 55  689999999999998866554443444688


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      +.+++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+.++|.+++++.+.+.+.+++.||+++++++|++++
T Consensus       156 ~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~  235 (455)
T 2yqu_A          156 TSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVV  235 (455)
T ss_dssp             CHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred             chHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            88888888778999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                      .+++++.+++.     +++++++|.||+|+|++|+...+.++..|+.++++|++.||+++||+.|+|||+|||++.+.++
T Consensus       236 ~~~~~v~v~~~-----~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~  310 (455)
T 2yqu_A          236 PEAKGARVELE-----GGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLA  310 (455)
T ss_dssp             EETTEEEEEET-----TSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSCCCH
T ss_pred             EeCCEEEEEEC-----CCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCccCH
Confidence            87777766654     4568999999999999999987656788999888899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEE
Q 011787          363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA  442 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  442 (477)
                      +.|..||+.+|+||++....+++..+|++.|++|+++++|+++++++..|+++++...++....++...+++++++|+++
T Consensus       311 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  390 (455)
T 2yqu_A          311 HKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLA  390 (455)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEE
T ss_pred             HHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEE
Confidence            99999999999999987666777888999999999999999999999999999999999988888877777889999999


Q ss_pred             ECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          443 EKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       443 ~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++++|+|++++|+.+.|+|+.+++||.++
T Consensus       391 ~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  421 (455)
T 2yqu_A          391 HAKTDRILGVHGIGARVGDVLAEAALALFFK  421 (455)
T ss_dssp             ETTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            9889999999999999999999999999754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=6.7e-64  Score=503.94  Aligned_cols=417  Identities=31%  Similarity=0.536  Sum_probs=363.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++.....+.... ....+++.......+
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~-~~~~~g~~~~~~~~~   79 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVR-DAPGFGVQASGGTLD   79 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTBCCC---CC
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHh-hhhhcCcccCCCCcC
Confidence            34689999999999999999999999999999996 8999999999999998877766655544 345567665556788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDE  198 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~  198 (477)
                      |..+..+.......+...+...+.+.+++++.+++.+++...+.+   +|  .++.||+||||||++|..+  |+.    
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~p~i~G~----  150 (463)
T 2r9z_A           80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV---EG--QRLSADHIVIATGGRPIVPRLPGA----  150 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE---TT--EEEEEEEEEECCCEEECCCSCTTG----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE---CC--EEEEcCEEEECCCCCCCCCCCCCc----
Confidence            999999988888888888888888899999999888888776655   55  6799999999999988543  443    


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ..+++++++..+...+++++|||+|.+|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  230 (463)
T 2r9z_A          151 ELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAV  230 (463)
T ss_dssp             GGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCE
T ss_pred             cceecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            23667788888878899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~-~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      ++++.+++++.+++.     +++ ++++|.|++|+|++|+++.+.++++|++++++|+|.||+++||+.|+|||+|||++
T Consensus       231 ~~i~~~~~~~~v~~~-----~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~  305 (463)
T 2r9z_A          231 AALERDAQGTTLVAQ-----DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITG  305 (463)
T ss_dssp             EEEEEETTEEEEEET-----TCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGT
T ss_pred             EEEEEeCCeEEEEEe-----CCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCC
Confidence            999877666666654     445 89999999999999999865567889999989999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHcCCC-CC-CCCCCCceEEEcCCCeeeecCCHHHHHHc-CCCEEEEEEecCccccchhcCCC
Q 011787          358 GPMLAHKAEEDGVACVEFLAGKH-GH-VDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVEYRVGKFPFLANSRAKAIDDA  434 (477)
Q Consensus       358 ~~~~~~~A~~~g~~aa~~i~~~~-~~-~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  434 (477)
                      .+.+++.|..||+.+|.||++.. .. .++..+|+++|++|+++++|++++++... |.++.+...++....++...+.+
T Consensus       306 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~  385 (463)
T 2r9z_A          306 RDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGP  385 (463)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCC
T ss_pred             CcccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCC
Confidence            89999999999999999999754 33 57888999999999999999999999876 67888888888887777766678


Q ss_pred             ceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          435 EGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       435 ~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      .+|+|+++|+++++|+|+|++|+++.|+|+.+++||..+
T Consensus       386 ~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  424 (463)
T 2r9z_A          386 KTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMG  424 (463)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTT
T ss_pred             cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            899999999999999999999999999999999999754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.5e-64  Score=505.61  Aligned_cols=418  Identities=39%  Similarity=0.651  Sum_probs=368.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhh---CCccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS---HGVKFSSVE  118 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~---~g~~~~~~~  118 (477)
                      .++||+|||||+||++||.+|++.|++|+|||+ +.+||+|.+.+|+|++.++.....++... .+..   +|+......
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~-~~~~~~~~g~~~~~~~   81 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQAS-RFTEPSPLGISVASPR   81 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-HTTSCCTTCCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHh-hcccccccCcccCCCc
Confidence            358999999999999999999999999999999 78999999999999999888777776655 3444   677766667


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                      +++..+..+..+..+.+...+..++++.+++++.+++.+++.+.+.+.  +   .++.||+||||||++|..+|+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~--~---~~~~~d~lviATGs~p~~~~~~~~~~  156 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD--G---QRIQCEHLLLATGSSSVELPMLPLGG  156 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEET--T---EEEECSEEEECCCEEECCBTTBCCBT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEe--e---EEEEeCEEEEeCCCCCCCCCCCCccC
Confidence            899999999998888888888888899999999998888877665552  2   67999999999999987666544333


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                       .+++..+...+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|
T Consensus       157 -~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v  235 (458)
T 1lvl_A          157 -PVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSV  235 (458)
T ss_dssp             -TEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred             -cEecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence             5788888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      ++++. + .+.++  . .+++..++++|.|++|+|++||...+.++..|+.++++ +|.||+++||+.|+|||+|||++.
T Consensus       236 ~~i~~-~-~v~v~--~-~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~~~  309 (458)
T 1lvl_A          236 EGYEN-G-CLLAN--D-GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVAGE  309 (458)
T ss_dssp             EEEET-T-EEEEE--C-SSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGGCS
T ss_pred             EEEEe-C-CEEEE--E-CCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccCCC
Confidence            99976 3 34443  1 22333689999999999999999876568889998877 899999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEE
Q 011787          359 PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV  438 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (477)
                      +.+++.|..||+.||.||++....+++..+|++.|++|+++++|+++++++..|+++.+..+++....++...+++.+|+
T Consensus       310 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  389 (458)
T 1lvl_A          310 PMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFV  389 (458)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEE
T ss_pred             cccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEEE
Confidence            99999999999999999998766677888999999999999999999999999999999999988888877777788999


Q ss_pred             EEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          439 KILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       439 k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      |+++|+++++|+|++++|+++.|+|+.+++||.++
T Consensus       390 kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~  424 (458)
T 1lvl_A          390 RVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMG  424 (458)
T ss_dssp             EEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHT
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            99999989999999999999999999999999743

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.5e-63  Score=505.00  Aligned_cols=425  Identities=28%  Similarity=0.438  Sum_probs=363.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-------C--CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-------G--ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-------~--~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      .+|||+||||||||++||.+|++.|++|+|||+.       .  .+||+|.+.+|+|++.++.......... ....+++
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~-~~~~~g~   86 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVH-EAAAYGW   86 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHH-HHHHTTB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHH-HHHhcCc
Confidence            4699999999999999999999999999999942       1  3899999999999998877776655443 3566777


Q ss_pred             cccc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC
Q 011787          113 KFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL  191 (477)
Q Consensus       113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~  191 (477)
                      .... ..++|..+..+.....+.+...+...+++.+++++.+.+.+++++.+.+.+.+|. ..+.||+||||||++|..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~-~~~~~d~lviATGs~p~~p  165 (483)
T 3dgh_A           87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPRYP  165 (483)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC-EEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe-EEEEcCEEEEeCCCCcCCC
Confidence            6643 5789999999999988888877878888899999999999999999999887774 6799999999999988643


Q ss_pred             --CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          192 --PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       192 --~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                        |+..   ...++++++..+...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.++++|
T Consensus       166 ~i~G~~---~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~G  241 (483)
T 3dgh_A          166 DIPGAV---EYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERG  241 (483)
T ss_dssp             SSTTHH---HHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHTT
T ss_pred             CCCCcc---cccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhCC
Confidence              4432   23567888888888899999999999999999999999999999988 46788999999999999999999


Q ss_pred             cEEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          270 MKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      |++++++.+.+++..++ .+.+++.+..+++..++++|.|++|+|++|+++.+.++..|+++++ |+|.||+++||++|+
T Consensus       242 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t~~~~  320 (483)
T 3dgh_A          242 IPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVAN  320 (483)
T ss_dssp             CCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBCSSTT
T ss_pred             CEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCccCCCC
Confidence            99999999999987544 4667776544455568999999999999999988767889999998 999999999999999


Q ss_pred             eEEecccC-CCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCc
Q 011787          349 VYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLA  424 (477)
Q Consensus       349 vya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~  424 (477)
                      |||+|||+ +.|.+++.|..||++||+||++.. ...++..+|+++|++|+++++|+||+||++. + ..+.+...++..
T Consensus       321 IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~  400 (483)
T 3dgh_A          321 IYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKP  400 (483)
T ss_dssp             EEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCC
T ss_pred             EEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEEeecc
Confidence            99999998 678899999999999999999865 3467889999999999999999999999875 3 356666655554


Q ss_pred             cccchh-cCCCceEEEEEEECC-CCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          425 NSRAKA-IDDAEGIVKILAEKE-TDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       425 ~~~~~~-~~~~~~~~k~~~~~~-~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ..+... .+.+++|+|+++|++ |++|||+|++|++|.|+|+.+++||.++
T Consensus       401 ~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  451 (483)
T 3dgh_A          401 TEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSG  451 (483)
T ss_dssp             GGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            433221 235689999999986 8999999999999999999999999854

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.7e-62  Score=496.95  Aligned_cols=417  Identities=27%  Similarity=0.448  Sum_probs=346.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++.......... ....+++... ..++|.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~gc~P~k~l~~~a~~~~~~~-~~~~~g~~~~-~~~~~~   78 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILE-NSRHYGFDTK-FSFNLP   78 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHH-HGGGGTCCCC-CCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccccccCCcchHHHHHHHHHHHHHH-hhHhcCCccC-CccCHH
Confidence            489999999999999999999999999999996 6999999999999998876665554443 3455666544 567899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEec---------CCceEEEEecEEEEccCCCCCCC--
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTI---------EGGNTVVKGKNIIIATGSDVKSL--  191 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~---------~g~~~~i~~d~lvlAtG~~~~~~--  191 (477)
                      .+..+.......+...+...+++.+++++.+++.+++.+.+.+...         ++...++.||+||||||++|..+  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i  158 (500)
T 1onf_A           79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPV  158 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCC
Confidence            9988888888888877888888899999999877777655555320         11125799999999999998543  


Q ss_pred             CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       192 ~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      |+.    ..+++++++..+.. +++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+.+.|+++||+
T Consensus       159 ~G~----~~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~  233 (500)
T 1onf_A          159 KGI----ENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNIN  233 (500)
T ss_dssp             TTG----GGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCC----CcccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCE
Confidence            443    24677788877776 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCceEEEEEEcCC-eEEEEEeecCCCceEE-EEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          272 FMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTI-LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~-i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      +++++++++++.+++ .+.+.+.     ++++ +++|.|++|+|++||++.+.++.+|+++ ++|+|.||+++||+.|+|
T Consensus       234 i~~~~~v~~i~~~~~~~~~v~~~-----~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~i  307 (500)
T 1onf_A          234 IVTFADVVEIKKVSDKNLSIHLS-----DGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNI  307 (500)
T ss_dssp             EECSCCEEEEEESSTTCEEEEET-----TSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSE
T ss_pred             EEECCEEEEEEEcCCceEEEEEC-----CCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCE
Confidence            999999999987643 3566654     3445 9999999999999999765568889988 789999999999999999


Q ss_pred             EEecccC----------------------------------CCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEc
Q 011787          350 YAIGDVI----------------------------------PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYT  394 (477)
Q Consensus       350 ya~GD~~----------------------------------~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~  394 (477)
                      ||+|||+                                  +.+.+++.|..||++||+||++.. ..+++..+|+++|+
T Consensus       308 ya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~  387 (500)
T 1onf_A          308 YAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFS  387 (500)
T ss_dssp             EECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEECC
T ss_pred             EEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEEc
Confidence            9999999                                  567799999999999999999754 44678889999999


Q ss_pred             CCCeeeecCCHHHHHHc-C-CCEEEEEEecCccccch----hcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHH
Q 011787          395 HPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAK----AIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAM  468 (477)
Q Consensus       395 ~~~~~~~G~~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~  468 (477)
                      +|+++++|+++++++.. | .++.+...++....++.    ..+++.+++|+++|+++++|||+|++|+++.|+|+.+++
T Consensus       388 ~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~  467 (500)
T 1onf_A          388 HPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAV  467 (500)
T ss_dssp             SSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHH
T ss_pred             CcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence            99999999999999887 4 68888888888777766    345678999999999999999999999999999999999


Q ss_pred             HhcCC
Q 011787          469 ATHDK  473 (477)
Q Consensus       469 ~~~~~  473 (477)
                      ||..+
T Consensus       468 ai~~~  472 (500)
T 1onf_A          468 ALKMN  472 (500)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            99754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=1.1e-62  Score=502.26  Aligned_cols=418  Identities=23%  Similarity=0.368  Sum_probs=345.9

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      .++.++||+|||||+||++||.+|++.|++|+|||++..+||+|.+.+|+|++.++.....+..... ...+++ +....
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~~g~-~~~~~  116 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART-FSGQYW-FPDMT  116 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHH-TTTSTT-CCCCT
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhh-hhhcCc-HHHHH
Confidence            3456799999999999999999999999999999998779999999999999988776665554432 333443 11110


Q ss_pred             cChHHHHHHHHHHHHHHHHHHH---HHh-----hhCCeEEE-EeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIE---GLF-----KKNKVTYV-KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~v~~~-~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      ..+    ....+....+...+.   .++     ++.+++++ .+.+.+++...+.+.   +  ..+.||+||+|||++|.
T Consensus       117 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~---g--~~~~~d~lViATGs~p~  187 (523)
T 1mo9_A          117 EKV----VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA---G--KVFKAKNLILAVGAGPG  187 (523)
T ss_dssp             TCC----CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET---T--EEEEBSCEEECCCEECC
T ss_pred             hhh----hhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC---C--EEEEeCEEEECCCCCCC
Confidence            000    001222222322222   455     67799998 788888887665553   4  67999999999999886


Q ss_pred             CCCCCccCCceEecchhhh-cccCCC-CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 011787          190 SLPGITIDEKRIVSSTGAL-ALNEVP-KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK  267 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~-~~~~~~-~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~  267 (477)
                      .++..+.+...+++.+++. .+...+ ++++|||+|++|+|+|..+++.|.+|+++++.+.+++.+++++.+.+.+.+++
T Consensus       188 ~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~  267 (523)
T 1mo9_A          188 TLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE  267 (523)
T ss_dssp             CCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHh
Confidence            4432222334478888888 777777 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEeCceEEEEEEcCCe----EEEEEeecCCCceE-EEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC
Q 011787          268 QKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF  342 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~~~----~~v~~~~~~~~~~~-~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l  342 (477)
                      .||+++++++|++++.++++    +.+++.     +++ ++++|.||+|+|++||++. .++.+|++++++|+|.||+++
T Consensus       268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~-----~G~~~i~aD~Vv~A~G~~p~~~~-~l~~~gl~~~~~G~i~Vd~~~  341 (523)
T 1mo9_A          268 QGMEIISGSNVTRIEEDANGRVQAVVAMTP-----NGEMRIETDFVFLGLGEQPRSAE-LAKILGLDLGPKGEVLVNEYL  341 (523)
T ss_dssp             TTCEEESSCEEEEEEECTTSBEEEEEEEET-----TEEEEEECSCEEECCCCEECCHH-HHHHHTCCBCTTSCBCCCTTS
T ss_pred             CCcEEEECCEEEEEEEcCCCceEEEEEEEC-----CCcEEEEcCEEEECcCCccCCcc-CHHHcCCccCCCCCEEECCCC
Confidence            99999999999999875444    455553     455 8999999999999999872 267889999888999999999


Q ss_pred             CCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEec
Q 011787          343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPF  422 (477)
Q Consensus       343 ~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  422 (477)
                      ||+.|+|||+|||++.+.+++.|..||++||.||++...++++..+|+++|++|+++++|+|+++|+..|+++.+..+++
T Consensus       342 ~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~  421 (523)
T 1mo9_A          342 QTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPP  421 (523)
T ss_dssp             BCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESC
T ss_pred             ccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhCCCCEEEEEEec
Confidence            99999999999999999999999999999999999876666788899999999999999999999999999999999888


Q ss_pred             Cc--------------cccchhc--CCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          423 LA--------------NSRAKAI--DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       423 ~~--------------~~~~~~~--~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ..              ..++.+.  +++.+|+|+++|+++++|||+|++|+++.|+|+.+++||.++
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  488 (523)
T 1mo9_A          422 DTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQG  488 (523)
T ss_dssp             CSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence            76              5677776  667899999999999999999999999999999999999754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=5.3e-58  Score=476.12  Aligned_cols=427  Identities=29%  Similarity=0.441  Sum_probs=351.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-C-------CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-G-------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-~-------~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      ..++||+||||||||++||.+|++.|++|+|||+. +       .+||+|.+.+|+|++.+.......... ..+..+|+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~-~~~~~~g~  183 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHAL-EDAEHFGW  183 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHH-HHHHHTTC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHH-hhHHhCCc
Confidence            45699999999999999999999999999999973 2       489999999999999887665544433 33456676


Q ss_pred             cccc--cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          113 KFSS--VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       113 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                      ....  ...+|..+..+....+..+...+...+...+++++.+.+.+++...+.+...+|+..++.||+||||||++|+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~  263 (598)
T 2x8g_A          184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY  263 (598)
T ss_dssp             CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECC
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCC
Confidence            5432  46789999888888877776666666778899999999999999998888777755679999999999998864


Q ss_pred             C--CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787          191 L--PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       191 ~--~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~  268 (477)
                      +  ||..   ....+.+++..+...+++++|||+|++|+|+|..|++.|.+||++++. .+++.+++++.+.+.+.+++.
T Consensus       264 p~i~G~~---~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~  339 (598)
T 2x8g_A          264 PEIPGAV---EYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENH  339 (598)
T ss_dssp             CSSTTHH---HHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCcc---cceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhC
Confidence            3  3322   234567777777777899999999999999999999999999999988 678889999999999999999


Q ss_pred             CcEEEeCceEEEEEEc------C---CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecC
Q 011787          269 KMKFMLKTKVVGVDLS------G---DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN  339 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~------~---~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd  339 (477)
                      ||++++++.++++...      +   +++.+.+.. .++....+++|.|++|+|++||++.+.++..|++++++|+|.||
T Consensus       340 gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd  418 (598)
T 2x8g_A          340 GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHY-TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCT  418 (598)
T ss_dssp             TCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEE-TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCC
T ss_pred             CCEEEECCeEEEEEeccccccccCCCceEEEEEEe-CCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeC
Confidence            9999999988888542      2   444444321 12223345699999999999999876567889999988999999


Q ss_pred             CCCCCCCCCeEEecccC-CCCCchhHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEcCCCeeeecCCHHHHHHc-C-CCE
Q 011787          340 ERFATNIPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEY  415 (477)
Q Consensus       340 ~~l~t~~~~vya~GD~~-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~-~-~~~  415 (477)
                      +++||++|+|||+|||+ +.+.+++.|..||+.||.||++.. ...++..+|+++|++|+++++|+++++|... + ..+
T Consensus       419 ~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~  498 (598)
T 2x8g_A          419 DDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDI  498 (598)
T ss_dssp             TTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGE
T ss_pred             CCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHHHhhCCCCcE
Confidence            99999999999999995 557899999999999999999654 3467888999999999999999999999876 3 357


Q ss_pred             EEEEEecCccccchhcC-CCceEEEEEEEC-CCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          416 RVGKFPFLANSRAKAID-DAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~-~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      .+...++....+..... .+.+++|+++++ ++++|+|+|++|+++.|+|+.+++||.++
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~  558 (598)
T 2x8g_A          499 EVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMG  558 (598)
T ss_dssp             EEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred             EEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            88777777666555443 367999999995 68999999999999999999999999754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=3.8e-56  Score=443.64  Aligned_cols=379  Identities=20%  Similarity=0.293  Sum_probs=289.6

Q ss_pred             cEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +||||||||||++||.+|++.|  .+|+|||+++..++.   ..|+|..               +... .......+.. 
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~---~~~l~~~---------------~~~~-~~~~~~~~~~-   61 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA---NCALPYV---------------IGEV-VEDRRYALAY-   61 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBC---GGGHHHH---------------HTTS-SCCGGGTBCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCC---cchhHHH---------------HcCC-ccchhhhhhc-
Confidence            6999999999999999999987  579999997654321   1122210               0000 0000000000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEe---cCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDT---IEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~---~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                                     ..+.++++.+++++.+ .+..+|.....+..   ..+...++.||+||||||++|+.++ ++.+.
T Consensus        62 ---------------~~~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~-i~g~~  125 (437)
T 4eqs_A           62 ---------------TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG-FESDI  125 (437)
T ss_dssp             ---------------CHHHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC-CCCTT
T ss_pred             ---------------CHHHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc-ccCce
Confidence                           0123445668888776 46677765443332   2334467999999999999986443 32221


Q ss_pred             c-eEecchhhhccc-----CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          199 K-RIVSSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       199 ~-~~~~~~~~~~~~-----~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      . .+.+..++..++     ..+++++|||+|++|+|+|..++++|.+||++++.+++++.+|+++.+.+.+.++++||++
T Consensus       126 ~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i  205 (437)
T 4eqs_A          126 TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPY  205 (437)
T ss_dssp             EECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCE
T ss_pred             EEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEE
Confidence            1 222334433332     3488999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++++|++++.  +.  +.+.     +++++++|.|++|+|++||++.  ++..|++++++|+|.||+++||++|||||+
T Consensus       206 ~~~~~v~~~~~--~~--v~~~-----~g~~~~~D~vl~a~G~~Pn~~~--~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~  274 (437)
T 4eqs_A          206 RLNEEINAING--NE--ITFK-----SGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVPNIYAI  274 (437)
T ss_dssp             EESCCEEEEET--TE--EEET-----TSCEEECSEEEECCCEEESCGG--GTTSSCCCCTTSCEECCTTCBCSSTTEEEC
T ss_pred             EeccEEEEecC--Ce--eeec-----CCeEEeeeeEEEEeceecCcHH--HHhhhhhhccCCcEecCCCccCCCCCEEEE
Confidence            99999998853  33  3443     6678999999999999999986  788899999999999999999999999999


Q ss_pred             cccCCC----------CCchhHHHHHHHHHHHHHcCCCCC--CCCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEE
Q 011787          353 GDVIPG----------PMLAHKAEEDGVACVEFLAGKHGH--VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF  420 (477)
Q Consensus       353 GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  420 (477)
                      |||++.          +.+++.|.+||+++|+||++.+..  .++...|.+.|++|+++++|+||+||+..+  +++..+
T Consensus       275 GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~--~~~~~~  352 (437)
T 4eqs_A          275 GDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFD--YKMVEV  352 (437)
T ss_dssp             GGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSC--EEEEEE
T ss_pred             EEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCC--ceEEEE
Confidence            999853          347899999999999999987642  245667889999999999999999998765  555555


Q ss_pred             ecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787          421 PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK  473 (477)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~  473 (477)
                      ++....+. ..++++||+|+++|++|++|||+|++|++ |.|+|+.+++||.++
T Consensus       353 ~~~~~~~~-~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~  405 (437)
T 4eqs_A          353 TQGAHANY-YPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQ  405 (437)
T ss_dssp             EEESSCTT-SSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred             ecCCchhh-cCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcC
Confidence            54443332 23567899999999999999999999985 999999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.9e-55  Score=437.18  Aligned_cols=380  Identities=23%  Similarity=0.325  Sum_probs=299.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ++||+|||||+||++||..|++.  +.+|+|||+++.+++..   ..+|..               +.  +.      .+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~---~~~p~~---------------~~--~~------~~   56 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP---CGIPYV---------------VE--GL------ST   56 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC---cCCccc---------------cC--CC------CC
Confidence            57999999999999999999998  78999999977654321   001110               00  00      00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCcc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEG-LFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITI  196 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~  196 (477)
                      .           ..+.....+ +.++.+++++.+ .+..++...+.+.+.++ ..++.||+||||||++|..  +|+.+ 
T Consensus        57 ~-----------~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g-~~~~~~d~lviAtG~~p~~p~i~G~~-  123 (449)
T 3kd9_A           57 P-----------DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGG-EKSYEWDYLVFANGASPQVPAIEGVN-  123 (449)
T ss_dssp             --------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSS-EEEEECSEEEECCCEEECCCSCBTTT-
T ss_pred             H-----------HHhhhcCHHHHHHhcCcEEEecCEEEEEecCCCEEEECCc-eEEEEcCEEEECCCCCCCCCCCCCCC-
Confidence            0           001111112 225678999988 78889988888877655 3579999999999998854  34443 


Q ss_pred             CCceEec---chhhhccc---C--CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHh
Q 011787          197 DEKRIVS---STGALALN---E--VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEK  267 (477)
Q Consensus       197 ~~~~~~~---~~~~~~~~---~--~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~  267 (477)
                       ...+++   ..+...+.   .  .+++++|||+|++|+|+|..+++.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus       124 -~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~  202 (449)
T 3kd9_A          124 -LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK  202 (449)
T ss_dssp             -STTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTT
T ss_pred             -CCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHh
Confidence             233443   33333322   2  5789999999999999999999999999999999999987 999999999999999


Q ss_pred             cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCC
Q 011787          268 QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP  347 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~  347 (477)
                      . |++++++.+.+++.++ ++.....     ++.++++|.|++|+|++|++++  ++.+|++++++|+|.||+++||+.|
T Consensus       203 ~-v~i~~~~~v~~i~~~~-~v~~v~~-----~g~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~~~G~i~vd~~~~t~~~  273 (449)
T 3kd9_A          203 H-VNLRLQEITMKIEGEE-RVEKVVT-----DAGEYKAELVILATGIKPNIEL--AKQLGVRIGETGAIWTNEKMQTSVE  273 (449)
T ss_dssp             T-SEEEESCCEEEEECSS-SCCEEEE-----TTEEEECSEEEECSCEEECCHH--HHHTTCCBCTTSSBCCCTTCBCSST
T ss_pred             C-cEEEeCCeEEEEeccC-cEEEEEe-----CCCEEECCEEEEeeCCccCHHH--HHhCCccCCCCCCEEECCCCccCCC
Confidence            9 9999999999997655 3332232     4578999999999999999875  6788999999999999999999999


Q ss_pred             CeEEecccCC-------C---CCchhHHHHHHHHHHHHHcCCCCCCC-CCCCceEEEcCCCeeeecCCHHHHHHcCCCEE
Q 011787          348 GVYAIGDVIP-------G---PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELGVEYR  416 (477)
Q Consensus       348 ~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~  416 (477)
                      +|||+|||+.       .   +.+++.|..||+++|+||++....++ +...|++.|++|+++++|+||+||++.|+++.
T Consensus       274 ~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~  353 (449)
T 3kd9_A          274 NVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVR  353 (449)
T ss_dssp             TEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEE
T ss_pred             CEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceE
Confidence            9999999983       2   47899999999999999998765443 34568899999999999999999999999999


Q ss_pred             EEEEecCccccchhc-CCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcCC
Q 011787          417 VGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       417 ~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      +..++  ...++... +++++|+|+++|++|++|||+|++|+++.|+|+.+++||.++
T Consensus       354 ~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~  409 (449)
T 3kd9_A          354 TAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAG  409 (449)
T ss_dssp             EEEEE--EESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred             EEEEe--cCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcC
Confidence            88764  34455555 567899999999999999999999999999999999999754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=3.4e-54  Score=432.70  Aligned_cols=380  Identities=22%  Similarity=0.260  Sum_probs=294.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +||+|||||+||++||.+|++.  |.+|+|||+++.+|.       .|............           .......  
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~-------~~~~~~~~~~~~~~-----------~~~~~~~--   62 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGY-------LSGGLSAYFNHTIN-----------ELHEARY--   62 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSS-------CCC---------------------------CC--
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcc-------cCccchhhhcCCCC-----------CHHHhhc--
Confidence            6999999999999999999998  899999999876652       11110000000000           0000000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                                      .....+.+.+++++.+ .+..++..  .+.+.. .+....+.||+||||||++|..++..+.+.
T Consensus        63 ----------------~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~-~~~~~~~~~d~lviAtG~~p~~p~i~g~~~  125 (452)
T 3oc4_A           63 ----------------ITEEELRRQKIQLLLNREVVAMDVENQLIAWTR-KEEQQWYSYDKLILATGASQFSTQIRGSQT  125 (452)
T ss_dssp             ----------------CCHHHHHHTTEEEECSCEEEEEETTTTEEEEEE-TTEEEEEECSEEEECCCCCBCCCCCBTTTC
T ss_pred             ----------------CCHHHHHHCCCEEEECCEEEEEECCCCEEEEEe-cCceEEEEcCEEEECCCcccCCCCCCCCCC
Confidence                            0123445678888654 56666554  444431 223478999999999999986544333334


Q ss_pred             ceEecchhhh------cccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHhcCcE
Q 011787          199 KRIVSSTGAL------ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       199 ~~~~~~~~~~------~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gv~  271 (477)
                      ..+++..+..      .....+++++|||+|++|+|+|..+++.|.+|+++++.+++++. +|+++.+.+.+.+++.||+
T Consensus       126 ~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~  205 (452)
T 3oc4_A          126 EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVI  205 (452)
T ss_dssp             TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEE
T ss_pred             CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCE
Confidence            4555554332      23345899999999999999999999999999999999999885 8999999999999999999


Q ss_pred             EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      ++++++|++++..++++.+.+.     ++ ++++|.|++|+|++||++.  ++.. +.++++|+|.||+++||+.|+|||
T Consensus       206 i~~~~~v~~i~~~~~~v~v~~~-----~g-~i~aD~Vv~A~G~~p~~~~--l~~~-~~~~~~g~i~vd~~~~t~~~~IyA  276 (452)
T 3oc4_A          206 FHFEETVLGIEETANGIVLETS-----EQ-EISCDSGIFALNLHPQLAY--LDKK-IQRNLDQTIAVDAYLQTSVPNVFA  276 (452)
T ss_dssp             EEETCCEEEEEECSSCEEEEES-----SC-EEEESEEEECSCCBCCCSS--CCTT-SCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred             EEeCCEEEEEEccCCeEEEEEC-----CC-EEEeCEEEECcCCCCChHH--HHhh-hccCCCCCEEECcCccCCCCCEEE
Confidence            9999999999876777655543     33 8999999999999999986  3443 788889999999999999999999


Q ss_pred             ecccCCCC----------CchhHHHHHHHHHHHHHcCCCCCC--CCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEE
Q 011787          352 IGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK  419 (477)
Q Consensus       352 ~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~--~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  419 (477)
                      +|||++.+          .+++.|..||++||+||++....+  .+..+|+.+|+ |+++++|+||+||++.|+++.+..
T Consensus       277 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~a~vG~te~~a~~~g~~~~~~~  355 (452)
T 3oc4_A          277 IGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGD-YYLASTGLTETEGLFFPQTLASII  355 (452)
T ss_dssp             CGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETT-EEEEEEECCSGGGGGSSSCEEEEE
T ss_pred             EEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEcC-eeEEEecCCHHHHHHCCCceEEEE
Confidence            99999753          589999999999999999876443  45667777775 699999999999999999999988


Q ss_pred             EecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcC-ChHHHHHHHHHHhcCC
Q 011787          420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP-NAGELIHEAAMATHDK  473 (477)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~-~~~~~~~~~~~~~~~~  473 (477)
                      +++...  + ..+++.+|+|+++|++|++|||+|++|+ +|.|+|+.+++||.++
T Consensus       356 ~~~~~~--~-~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~  407 (452)
T 3oc4_A          356 VRQPAP--P-LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTG  407 (452)
T ss_dssp             EEEECT--T-TTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTT
T ss_pred             EecCCc--c-CCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcC
Confidence            776543  3 3356789999999999999999999999 7999999999999854

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=8.3e-54  Score=432.51  Aligned_cols=390  Identities=24%  Similarity=0.294  Sum_probs=283.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ++||+|||||+||++||..|++.  |.+|+|||+++.++..    .| +|..           ....+           .
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~----~~gl~~~-----------~~g~~-----------~   56 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYG----GCGIPYY-----------VSGEV-----------S   56 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccc----ccccchh-----------hcCCC-----------C
Confidence            47999999999999999999998  8999999997665311    01 1100           00000           0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEE-eEEEEecCCEEEEEec---CCceEEEEecEEEEccCCCCCC--CCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISPSEVSVDTI---EGGNTVVKGKNIIIATGSDVKS--LPG  193 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~v~~~---~g~~~~i~~d~lvlAtG~~~~~--~~g  193 (477)
                      ....+.+...    .+......+.++.++++.. ..+..++.....+...   +|....+.||+||||||++|..  +|+
T Consensus        57 ~~~~~~~~~~----~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G  132 (472)
T 3iwa_A           57 NIESLQATPY----NVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEG  132 (472)
T ss_dssp             ----------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTT
T ss_pred             chHHhccccc----hhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCC
Confidence            0000000000    0111112223346788765 4566666544334333   3645689999999999998854  455


Q ss_pred             CccCCceEe---cchhhhccc-----CCCCeeEEEcccHHHHHHHHHHHHc-CCcEEEEEeCCCcCC-CCCHHHHHHHHH
Q 011787          194 ITIDEKRIV---SSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVP-SMDGEIRKQFQR  263 (477)
Q Consensus       194 ~~~~~~~~~---~~~~~~~~~-----~~~~~v~IiG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~-~~~~~~~~~~~~  263 (477)
                      .+  ...++   +..+...+.     ..+++++|||+|.+|+|+|..+++. |.+|+++++.+.+++ .+++++.+.+.+
T Consensus       133 ~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~  210 (472)
T 3iwa_A          133 MD--LAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRH  210 (472)
T ss_dssp             TT--SBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHH
T ss_pred             CC--CCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHH
Confidence            43  22233   334444443     4589999999999999999999999 999999999999999 899999999999


Q ss_pred             HHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCC
Q 011787          264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA  343 (477)
Q Consensus       264 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~  343 (477)
                      .+++.||+++++++|++++.+++++.+.+.     +++++++|.||+|+|++|+..+  ++.+|++++++|+|.||+++|
T Consensus       211 ~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~-----~g~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~~~g~i~vd~~~~  283 (472)
T 3iwa_A          211 DLEKNDVVVHTGEKVVRLEGENGKVARVIT-----DKRTLDADLVILAAGVSPNTQL--ARDAGLELDPRGAIIVDTRMR  283 (472)
T ss_dssp             HHHHTTCEEECSCCEEEEEESSSBEEEEEE-----SSCEEECSEEEECSCEEECCHH--HHHHTCCBCTTCCEECCTTCB
T ss_pred             HHHhcCCEEEeCCEEEEEEccCCeEEEEEe-----CCCEEEcCEEEECCCCCcCHHH--HHhCCccCCCCCCEEECCCcc
Confidence            999999999999999999887777777665     4568999999999999999875  677899999999999999999


Q ss_pred             CCCCCeEEecccC-------CC---CCchhHHHHHHHHHHHHHcCCCCCCC-CCCCceEEEcCCCeeeecCCHHHHHHcC
Q 011787          344 TNIPGVYAIGDVI-------PG---PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELG  412 (477)
Q Consensus       344 t~~~~vya~GD~~-------~~---~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~~G~~~~~~~~~~  412 (477)
                      |+.|+|||+|||+       +.   +.+++.|..||++||+||++...++. ....++..|++|+++++|+||+||++.|
T Consensus       284 t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g  363 (472)
T 3iwa_A          284 TSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREG  363 (472)
T ss_dssp             CSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTT
T ss_pred             cCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHHcC
Confidence            9999999999998       32   35889999999999999998765432 1222345688999999999999999999


Q ss_pred             CCEEEEEEecCccccchhc-CCCceEEEEEEECCCCeEEEEEEEcC---ChHHHHHHHHHHhcCC
Q 011787          413 VEYRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAP---NAGELIHEAAMATHDK  473 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~i~G~~~~g~---~~~~~~~~~~~~~~~~  473 (477)
                      +++.+..+.  ...++.++ ++++||+|+++|+++++|||+|++|+   .+.|+|+.+++||.++
T Consensus       364 ~~~~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~  426 (472)
T 3iwa_A          364 YDAVNVHVE--QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASK  426 (472)
T ss_dssp             CCEEEEEEE--C-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEEEe--cCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcC
Confidence            999988754  45566666 67889999999999999999999999   5699999999999854

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=3.4e-53  Score=439.37  Aligned_cols=403  Identities=20%  Similarity=0.307  Sum_probs=295.3

Q ss_pred             ccCCCcceeccccccCCCCCCCCCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhh
Q 011787           19 SNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHS   96 (477)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~   96 (477)
                      .|+..|++.....     .++.+.++||+|||||+||++||.+|++.  |.+|+|||+++.++-.    .|         
T Consensus        17 ~np~~g~e~~~~~-----~~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~----~~---------   78 (588)
T 3ics_A           17 GGQQMGRTLYDDD-----DKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA----NC---------   78 (588)
T ss_dssp             ----------------------CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GG---------
T ss_pred             cchhcCccccCcc-----cCCcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----CC---------
Confidence            4556666655431     12234468999999999999999999998  8999999997765410    00         


Q ss_pred             hHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCC--EEEEEe-cCCce
Q 011787           97 SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS--EVSVDT-IEGGN  172 (477)
Q Consensus        97 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~--~~~v~~-~~g~~  172 (477)
                      . ....    +..........                 +...+..+.++.++++..+ .+..++..  .+.+.. .+|..
T Consensus        79 ~-lp~~----~~g~~~~~~~~-----------------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~  136 (588)
T 3ics_A           79 G-LPYY----IGGVITERQKL-----------------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNET  136 (588)
T ss_dssp             G-HHHH----HTTSSCCGGGG-----------------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             C-Cchh----hcCcCCChHHh-----------------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCE
Confidence            0 0000    00000000000                 0111233445678887654 56666544  444443 34544


Q ss_pred             EEEEecEEEEccCCCCCC--CCCCccCCceEecchhhhcc--------cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEE
Q 011787          173 TVVKGKNIIIATGSDVKS--LPGITIDEKRIVSSTGALAL--------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTV  242 (477)
Q Consensus       173 ~~i~~d~lvlAtG~~~~~--~~g~~~~~~~~~~~~~~~~~--------~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtl  242 (477)
                      ..+.||+||||||++|..  +||.. +...+++..+....        ...+++++|||+|++|+|+|..+++.|.+|++
T Consensus       137 ~~~~~d~lviAtG~~p~~p~i~G~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  215 (588)
T 3ics_A          137 YNEAYDVLILSPGAKPIVPSIPGIE-EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTL  215 (588)
T ss_dssp             EEEECSEEEECCCEEECCCCCTTTT-TCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEeCCEEEECCCCCCCCCCCCCcc-cCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            589999999999998854  45541 23345554433322        24589999999999999999999999999999


Q ss_pred             EEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC
Q 011787          243 VEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG  322 (477)
Q Consensus       243 i~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~  322 (477)
                      +++.+++++.+++++.+.+.+.+++.||+++++++|++++.+++.  +.+.     +++++++|.||+|+|++|++++  
T Consensus       216 v~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~-----~g~~i~~D~Vi~a~G~~p~~~~--  286 (588)
T 3ics_A          216 VEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLK-----SGSVIQTDMLILAIGVQPESSL--  286 (588)
T ss_dssp             ECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEET-----TSCEEECSEEEECSCEEECCHH--
T ss_pred             EecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEEC-----CCCEEEcCEEEEccCCCCChHH--
Confidence            999999999999999999999999999999999999999776554  3443     5568999999999999999975  


Q ss_pred             ccccceeecCCCCeecCCCCCCCCCCeEEecccCC-------C---CCchhHHHHHHHHHHHHHcC-CCCCCCCCCCce-
Q 011787          323 LDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-------G---PMLAHKAEEDGVACVEFLAG-KHGHVDYDKVPG-  390 (477)
Q Consensus       323 ~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~-  390 (477)
                      ++..|+.++++|+|.||+++||+.|+|||+|||+.       .   +.+++.|..||++||+||++ ....+ ....|+ 
T Consensus       287 l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~~~~  365 (588)
T 3ics_A          287 AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLY-KGTLGTS  365 (588)
T ss_dssp             HHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCC-CCBCCCE
T ss_pred             HHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCcccc-CCcccce
Confidence            67889999999999999999999999999999983       2   46899999999999999998 54332 223333 


Q ss_pred             -EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHH
Q 011787          391 -VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAM  468 (477)
Q Consensus       391 -~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~  468 (477)
                       ..|++|+++++|+||+||++.|+++.+..++..... ....++++|++|+++|+++++|||+|++|++ +.|+|+.+++
T Consensus       366 ~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~  444 (588)
T 3ics_A          366 VAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHA-GYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIAT  444 (588)
T ss_dssp             EEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSC-TTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHH
T ss_pred             EEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCcc-ccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHH
Confidence             458899999999999999999999999886533221 2334567899999999999999999999985 8999999999


Q ss_pred             HhcCC
Q 011787          469 ATHDK  473 (477)
Q Consensus       469 ~~~~~  473 (477)
                      ||.++
T Consensus       445 ai~~~  449 (588)
T 3ics_A          445 AIKAN  449 (588)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            99853

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=5.1e-53  Score=436.83  Aligned_cols=384  Identities=21%  Similarity=0.300  Sum_probs=295.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +||+|||||+||++||.+|++.  +.+|+|||+++.++..    .|         ... ..    +.............+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~----~~---------~l~-~~----~~~~~~~~~~~~~~~   63 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA----NC---------GLP-YH----ISGEIAQRSALVLQT   63 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GG---------GHH-HH----HTSSSCCGGGGBCCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----cc---------Cch-HH----hcCCcCChHHhhccC
Confidence            6899999999999999999998  7899999997765421    00         000 00    000000000001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEE-eEEEEecCCE--EEEEe-cCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISPSE--VSVDT-IEGGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~--~~v~~-~~g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                                       ...+.++.++++.. .++..++...  +.+.. .+|...++.||+||||||++|..  +||.+
T Consensus        64 -----------------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~  126 (565)
T 3ntd_A           64 -----------------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVD  126 (565)
T ss_dssp             -----------------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCC
T ss_pred             -----------------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCC
Confidence                             11223335788754 4566676544  44432 23545689999999999998854  44543


Q ss_pred             cCCceEecchh---hhcc-----cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 011787          196 IDEKRIVSSTG---ALAL-----NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK  267 (477)
Q Consensus       196 ~~~~~~~~~~~---~~~~-----~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~  267 (477)
                        ...+++..+   ...+     ...+++++|||+|++|+|+|..+++.|.+|+++++.+++++.+++++.+.+.+.+++
T Consensus       127 --~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~  204 (565)
T 3ntd_A          127 --NPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRD  204 (565)
T ss_dssp             --STTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHH
T ss_pred             --CCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHH
Confidence              334444333   2222     245899999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEeCceEEEEEE-------------------cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccce
Q 011787          268 QKMKFMLKTKVVGVDL-------------------SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV  328 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~-------------------~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl  328 (477)
                      .||++++++.+++++.                   .++++.+.+.     +++++++|.||+|+|++|++.+  ++..|+
T Consensus       205 ~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~l--~~~~g~  277 (565)
T 3ntd_A          205 QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLS-----NGELLETDLLIMAIGVRPETQL--ARDAGL  277 (565)
T ss_dssp             TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEET-----TSCEEEESEEEECSCEEECCHH--HHHHTC
T ss_pred             CCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEc-----CCCEEEcCEEEECcCCccchHH--HHhCCc
Confidence            9999999999999987                   3556666653     4568999999999999999875  677889


Q ss_pred             eecCCCCeecCCCCCCCCCCeEEecccCC-------C---CCchhHHHHHHHHHHHHHcCCCCCCCC-CCCceEEEcCCC
Q 011787          329 ETDKMGRIPVNERFATNIPGVYAIGDVIP-------G---PMLAHKAEEDGVACVEFLAGKHGHVDY-DKVPGVVYTHPE  397 (477)
Q Consensus       329 ~~~~~g~i~vd~~l~t~~~~vya~GD~~~-------~---~~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~p~~~~~~~~  397 (477)
                      .++++|+|.||+++||+.|+|||+|||+.       .   +.+++.|..||++||+||++....++. ...+...|++|+
T Consensus       278 ~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~  357 (565)
T 3ntd_A          278 AIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLA  357 (565)
T ss_dssp             CBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEE
T ss_pred             ccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcE
Confidence            99999999999999999999999999983       2   357899999999999999987654322 233456688999


Q ss_pred             eeeecCCHHHHHHcCCCEEEEEEecCccccchhc-CCCceEEEEEEECCCCeEEEEEEEcCCh-HHHHHHHHHHhcCC
Q 011787          398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPNA-GELIHEAAMATHDK  473 (477)
Q Consensus       398 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~i~G~~~~g~~~-~~~~~~~~~~~~~~  473 (477)
                      ++++|++|+||++.|+++.+..+.  ...++.++ +++++|+|+++|+++++|||+|++|+++ .|+|+.+++||.++
T Consensus       358 ~~~vG~~e~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~  433 (565)
T 3ntd_A          358 VGATGKNEKQLKQAGIAFEKVYVH--TASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAG  433 (565)
T ss_dssp             EEEEECCHHHHHHTTCCCEEEEEE--EESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred             EEEecCCHHHHHHcCCCeEEEEEe--cCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcC
Confidence            999999999999999998876643  44555565 6678999999999999999999999999 99999999999754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=1.4e-51  Score=416.36  Aligned_cols=381  Identities=22%  Similarity=0.274  Sum_probs=295.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCc-cCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ++||+|||||+||++||..|++.  |.+|+|||+++..++.    .| +|.            .   +.....       
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~----~~~~~~------------~---~~~~~~-------   89 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA----QCGLPY------------V---ISGAIA-------   89 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC----GGGHHH------------H---HTTSSS-------
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC----CCCcch------------h---hcCCcC-------
Confidence            46999999999999999999996  8999999997665421    11 110            0   000000       


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHh-hhCCeEEEEe-EEEEecC--CEEEEEe-cCCceEEEEecEEEEccCCCCCCC--C
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKG-YGKFISP--SEVSVDT-IEGGNTVVKGKNIIIATGSDVKSL--P  192 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~--~~~~v~~-~~g~~~~i~~d~lvlAtG~~~~~~--~  192 (477)
                      ++..+..           ...+.+ +..+++++.+ .+..++.  +.+.+.. .+|+..++.||+||||||++|..+  |
T Consensus        90 ~~~~l~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~  158 (480)
T 3cgb_A           90 STEKLIA-----------RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWE  158 (480)
T ss_dssp             CGGGGBS-----------SCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCB
T ss_pred             CHHHhhh-----------cCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCC
Confidence            0111000           001122 3458998875 5666653  4555554 345334799999999999988543  4


Q ss_pred             CCccCCceEec---chhhhcccC-----CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHH
Q 011787          193 GITIDEKRIVS---STGALALNE-----VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRS  264 (477)
Q Consensus       193 g~~~~~~~~~~---~~~~~~~~~-----~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      +.+  ...+++   .++...+..     .+++++|||+|++|+|+|..+++.|.+|+++++.+.+++.+++++.+.+.+.
T Consensus       159 G~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~  236 (480)
T 3cgb_A          159 GRD--LQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKE  236 (480)
T ss_dssp             TTT--SBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHH
T ss_pred             Ccc--CCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHH
Confidence            433  233443   445444433     6899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCC
Q 011787          265 LEKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA  343 (477)
Q Consensus       265 l~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~  343 (477)
                      +++.||+++++++|++++.++ ++ .+.+      ++.++++|.||+|+|++|+.+.  ++..|++++++|+|.||+++|
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~-~v~~v~~------~~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~~~G~I~Vd~~~~  307 (480)
T 3cgb_A          237 ADKHHIEILTNENVKAFKGNE-RVEAVET------DKGTYKADLVLVSVGVKPNTDF--LEGTNIRTNHKGAIEVNAYMQ  307 (480)
T ss_dssp             HHHTTCEEECSCCEEEEEESS-BEEEEEE------TTEEEECSEEEECSCEEESCGG--GTTSCCCBCTTSCBCCCTTSB
T ss_pred             HHHcCcEEEcCCEEEEEEcCC-cEEEEEE------CCCEEEcCEEEECcCCCcChHH--HHhCCcccCCCCCEEECCCcc
Confidence            999999999999999998753 33 2333      2358999999999999999875  678889998889999999999


Q ss_pred             CCCCCeEEecccCCC----------CCchhHHHHHHHHHHHHHcCCCCCC-CCCCCceEEEcCCCeeeecCCHHHHHHcC
Q 011787          344 TNIPGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELG  412 (477)
Q Consensus       344 t~~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~  412 (477)
                      |+.|+|||+|||+..          +.+++.|..||++||+||++...++ .+...|++.|++|+++++|+++++++..+
T Consensus       308 ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g  387 (480)
T 3cgb_A          308 TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLH  387 (480)
T ss_dssp             CSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTT
T ss_pred             CCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHHcC
Confidence            999999999999942          2579999999999999999865443 35567899999999999999999999999


Q ss_pred             CCEEEEEEecCccccchhc-CCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787          413 VEYRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK  473 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~  473 (477)
                      +++.+..+..  ..++... +++.+|+|+++|+++++|+|++++|+. +.|+|+.+++||.++
T Consensus       388 ~~~~~~~~~~--~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~  448 (480)
T 3cgb_A          388 IPYKTVKVDS--TNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNK  448 (480)
T ss_dssp             CCEEEEEEEE--ESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred             CceEEEEEec--CCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcC
Confidence            9998877544  3344433 456799999999889999999999999 999999999999854

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=7.6e-52  Score=415.87  Aligned_cols=384  Identities=16%  Similarity=0.187  Sum_probs=295.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +||+|||||+||++||..|++.  |.+|+|||+++.++.    .+|   ..       .........  .+.+...... 
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~----~~~---~~-------~~~~~g~~~--~~~~~~~~~~-   63 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF----LSC---GI-------ALYLGKEIK--NNDPRGLFYS-   63 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB----CGG---GH-------HHHHTTCBG--GGCGGGGBSC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc----ccc---cc-------hhhhcCCcc--cCCHHHhhhc-
Confidence            5899999999999999999998  999999999765532    111   00       000000000  0001111011 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEec-CCceEEEEecEEEEccCCCCCCC--CCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVKSL--PGIT  195 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~~~--~g~~  195 (477)
                                       ....+++.+++++.+. +..++  .+.+.+... +++..++.||+||||||++|..+  |+.+
T Consensus        64 -----------------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~  126 (452)
T 2cdu_A           64 -----------------SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGID  126 (452)
T ss_dssp             -----------------CHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred             -----------------CHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCC
Confidence                             1233456789987764 66665  445555431 23347899999999999988543  4443


Q ss_pred             cCCceEecc------hhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhc
Q 011787          196 IDEKRIVSS------TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       196 ~~~~~~~~~------~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~  268 (477)
                        ...+++.      .++......+++++|||+|++|+|+|..+++.|.+|+++++.+++++ .+++++.+.+.+.+++.
T Consensus       127 --~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~  204 (452)
T 2cdu_A          127 --SSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAH  204 (452)
T ss_dssp             --STTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHT
T ss_pred             --CCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHC
Confidence              2334433      23333445689999999999999999999999999999999999988 79999999999999999


Q ss_pred             CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      ||+++++++|++++.+++++.....     +++++++|.|++|+|++||+++  ++.. ++++++|+|.||+++||+.|+
T Consensus       205 Gv~i~~~~~v~~i~~~~~~v~~v~~-----~g~~i~~D~vv~a~G~~p~~~l--l~~~-l~~~~~G~i~Vd~~~~t~~~~  276 (452)
T 2cdu_A          205 GVNLVLGSKVAAFEEVDDEIITKTL-----DGKEIKSDIAILCIGFRPNTEL--LKGK-VAMLDNGAIITDEYMHSSNRD  276 (452)
T ss_dssp             TCEEEESSCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCEEECCGG--GTTT-SCBCTTSCBCCCTTSBCSSTT
T ss_pred             CCEEEcCCeeEEEEcCCCeEEEEEe-----CCCEEECCEEEECcCCCCCHHH--HHHh-hhcCCCCCEEECCCcCcCCCC
Confidence            9999999999999875565542221     3468999999999999999985  5666 888888999999999999999


Q ss_pred             eEEecccCCC----------CCchhHHHHHHHHHHHHHcCCCCCC-CCCCCceEEEcCCCeeeecCCHHHHHHcCCCEEE
Q 011787          349 VYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV  417 (477)
Q Consensus       349 vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~  417 (477)
                      |||+|||+..          +.+++.|..||++||+||++...+. .+...|+..+++|+++++|+++++++..++++.+
T Consensus       277 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~  356 (452)
T 2cdu_A          277 IFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSE  356 (452)
T ss_dssp             EEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEE
T ss_pred             EEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEE
Confidence            9999999973          3689999999999999999865332 2344567788899999999999999999999887


Q ss_pred             EEEecCccccchhc-CCCceEEEEEEECCCCeEEEEEEEcC-ChHHHHHHHHHHhcCC
Q 011787          418 GKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAP-NAGELIHEAAMATHDK  473 (477)
Q Consensus       418 ~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~i~G~~~~g~-~~~~~~~~~~~~~~~~  473 (477)
                      ..  +....++..+ +++.+++|+++|+++++|+|+|++|+ ++.|+|+.+++||.++
T Consensus       357 ~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~  412 (452)
T 2cdu_A          357 VI--IADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNK  412 (452)
T ss_dssp             EE--EEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTT
T ss_pred             EE--EecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcC
Confidence            74  5556666665 45679999999988999999999999 8999999999999754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=6.7e-51  Score=408.39  Aligned_cols=380  Identities=24%  Similarity=0.304  Sum_probs=292.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +||+|||||+||++||..|++.  |.+|+|||+++.+|.    .+|   ..      . ..    +............. 
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~----~~~---~~------~-~~----~~~~~~~~~~~~~~-   61 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF----LSA---GM------Q-LY----LEGKVKDVNSVRYM-   61 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB----CGG---GH------H-HH----HTTSSCCGGGSBSC-
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc----ccc---cc------h-hh----hcCccCCHHHhhcC-
Confidence            4899999999999999999997  899999999765542    111   00      0 00    00000001111000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEe-cCCceEEEEecEEEEccCCCCCCC--CCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDT-IEGGNTVVKGKNIIIATGSDVKSL--PGIT  195 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~-~~g~~~~i~~d~lvlAtG~~~~~~--~g~~  195 (477)
                                       ....+++.+++++.+. +..++  .+.+.+.. .+|+..++.||+||||||++|..+  ||.+
T Consensus        62 -----------------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~  124 (447)
T 1nhp_A           62 -----------------TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKD  124 (447)
T ss_dssp             -----------------CHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTT
T ss_pred             -----------------CHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCC
Confidence                             1233455789987664 44564  44555543 335334699999999999988543  4433


Q ss_pred             cCCceEecch---hhhccc---C--CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHH
Q 011787          196 IDEKRIVSST---GALALN---E--VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLE  266 (477)
Q Consensus       196 ~~~~~~~~~~---~~~~~~---~--~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~  266 (477)
                        ...+++..   +...+.   .  .+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.++
T Consensus       125 --~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~  202 (447)
T 1nhp_A          125 --LDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEME  202 (447)
T ss_dssp             --SBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHH
T ss_pred             --CCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHH
Confidence              33455543   332221   2  689999999999999999999999999999999999888 689999999999999


Q ss_pred             hcCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCC
Q 011787          267 KQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATN  345 (477)
Q Consensus       267 ~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~  345 (477)
                      +.||+++++++|++++.+ +++ .+.+      ++.++++|.|++|+|++|+...  ++.. ++++++|+|.||+++||+
T Consensus       203 ~~gv~i~~~~~v~~i~~~-~~v~~v~~------~~~~i~~d~vi~a~G~~p~~~~--~~~~-~~~~~~G~i~Vd~~~~t~  272 (447)
T 1nhp_A          203 ANNITIATGETVERYEGD-GRVQKVVT------DKNAYDADLVVVAVGVRPNTAW--LKGT-LELHPNGLIKTDEYMRTS  272 (447)
T ss_dssp             TTTEEEEESCCEEEEECS-SBCCEEEE------SSCEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCCTTCBCS
T ss_pred             hCCCEEEcCCEEEEEEcc-CcEEEEEE------CCCEEECCEEEECcCCCCChHH--HHhh-hhhcCCCcEEECccccCC
Confidence            999999999999999865 333 3443      2357999999999999999875  5566 777788999999999999


Q ss_pred             CCCeEEecccCCC----------CCchhHHHHHHHHHHHHHcCCCCCC-CCCCCceEEEcCCCeeeecCCHHHHHHcCCC
Q 011787          346 IPGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVE  414 (477)
Q Consensus       346 ~~~vya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~  414 (477)
                      .|+|||+|||+..          +.+++.|..||++||+||++...++ .+...|++.|++|+++++|+++++++..|++
T Consensus       273 ~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~  352 (447)
T 1nhp_A          273 EPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKE  352 (447)
T ss_dssp             STTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCC
T ss_pred             CCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCCc
Confidence            9999999999962          3689999999999999999865332 3456788999999999999999999999999


Q ss_pred             EEEEEEecCccccchhc-CCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHhcCC
Q 011787          415 YRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMATHDK  473 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~~~~  473 (477)
                      +.+..  +....++... +++.+|+|+++++++++|+|+|++|+. +.|+|+.+++||.++
T Consensus       353 ~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~  411 (447)
T 1nhp_A          353 TKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAK  411 (447)
T ss_dssp             CEEEE--EEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTT
T ss_pred             eEEEE--EEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcC
Confidence            88775  3455566655 466799999999889999999999999 999999999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=2.8e-48  Score=381.80  Aligned_cols=360  Identities=19%  Similarity=0.267  Sum_probs=273.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      +.++||+|||||+||++||..|++.|  .+|+|+|++.         +|.|++.+++...         . .+.      
T Consensus         2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~---------g~~~~~~~l~~~~---------~-~~~------   56 (384)
T 2v3a_A            2 SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD---------GRSYSKPMLSTGF---------S-KNK------   56 (384)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC---------CCEECGGGGGGTT---------T-TTC------
T ss_pred             CCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC---------CCccCcccccHHH---------h-CCC------
Confidence            34589999999999999999999998  5699999853         3444443322110         0 000      


Q ss_pred             cChHHHHHHHHHHHHHHH-HHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCcc
Q 011787          119 VDLPAMMAQKDKAVSNLT-RGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI  196 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~  196 (477)
                       ...           .+. .....++++.+++++.+ .+..++.....|.+.+   ..+.||+||+|||++|..+|..+.
T Consensus        57 -~~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~d~lviAtG~~p~~p~i~g~  121 (384)
T 2v3a_A           57 -DAD-----------GLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGE---EEVRYRDLVLAWGAEPIRVPVEGD  121 (384)
T ss_dssp             -CHH-----------HHEEECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETT---EEEECSEEEECCCEEECCCCCBST
T ss_pred             -CHH-----------HhhccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECC---cEEECCEEEEeCCCCcCCCCCCCc
Confidence             000           011 11234455678998865 4666665444455443   469999999999999865432222


Q ss_pred             CCceEecchhhhccc------CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHhcC
Q 011787          197 DEKRIVSSTGALALN------EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~------~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~~g  269 (477)
                      +...+++.++...+.      ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       122 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~g  201 (384)
T 2v3a_A          122 AQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLG  201 (384)
T ss_dssp             TTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTT
T ss_pred             CcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcC
Confidence            234566665544322      34899999999999999999999999999999999988876 58899999999999999


Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      ++++++++|++++.+++++.+++.     +++++++|.|++|+|++|+.++  ++.+|++.+ +| |.||+++||+.|+|
T Consensus       202 v~i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~d~vv~a~G~~p~~~l--~~~~g~~~~-~g-i~vd~~~~t~~~~I  272 (384)
T 2v3a_A          202 VRFHLGPVLASLKKAGEGLEAHLS-----DGEVIPCDLVVSAVGLRPRTEL--AFAAGLAVN-RG-IVVDRSLRTSHANI  272 (384)
T ss_dssp             CEEEESCCEEEEEEETTEEEEEET-----TSCEEEESEEEECSCEEECCHH--HHHTTCCBS-SS-EEECTTCBCSSTTE
T ss_pred             CEEEeCCEEEEEEecCCEEEEEEC-----CCCEEECCEEEECcCCCcCHHH--HHHCCCCCC-CC-EEECCCCCCCCCCE
Confidence            999999999999887777777664     4578999999999999999874  678889887 46 99999999999999


Q ss_pred             EEecccCC--CC--CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcC-CCeeeecCCHHHHHHcCCCEEEEEEecCc
Q 011787          350 YAIGDVIP--GP--MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTH-PEVASVGKTEEQVKELGVEYRVGKFPFLA  424 (477)
Q Consensus       350 ya~GD~~~--~~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  424 (477)
                      ||+|||+.  .+  .+++.|..||+++|+||++...++++..+|+++|+. +++..+|.++..                 
T Consensus       273 yA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-----------------  335 (384)
T 2v3a_A          273 YALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGM-----------------  335 (384)
T ss_dssp             EECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECCTTSCEEEECCCTTC-----------------
T ss_pred             EEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCeeEEEecCCCCC-----------------
Confidence            99999984  22  357789999999999999887778888999999886 478888876531                 


Q ss_pred             cccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHH
Q 011787          425 NSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAA  467 (477)
Q Consensus       425 ~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~  467 (477)
                      ..++....++.+|.|++++ ++++|+|++++|++|.|+++.+.
T Consensus       336 ~~~~~~~~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~~  377 (384)
T 2v3a_A          336 DGQWLVEGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNK  377 (384)
T ss_dssp             CCEEEEEEETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHHT
T ss_pred             CceEEEEecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHHH
Confidence            1122223345689999887 67999999999999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=9.7e-47  Score=367.44  Aligned_cols=334  Identities=23%  Similarity=0.325  Sum_probs=250.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..|++|||||+||++||..|++.| +|+|||+++..+-         ++.++..      .   +. ..+........  
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~---------~~~~l~~------~---~~-g~~~~~~~~~~--   65 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYY---------SKPMLSH------Y---IA-GFIPRNRLFPY--   65 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCC---------CSTTHHH------H---HT-TSSCGGGGCSS--
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcc---------ccchhHH------H---Hh-CCCCHHHhccC--
Confidence            369999999999999999999999 9999999654321         1111110      0   00 00111111111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                                      ...++++.+++++.+ .+..++...+.|. .++  .++.||+||||||++|..++..+  ...+
T Consensus        66 ----------------~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~g--~~~~~d~lViATGs~p~~p~i~G--~~~v  124 (367)
T 1xhc_A           66 ----------------SLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TEK--GEVPYDTLVLATGARAREPQIKG--KEYL  124 (367)
T ss_dssp             ----------------CHHHHHHHTEEEECSCCEEEEETTTTEEE-ESS--CEEECSEEEECCCEEECCCCSBT--GGGE
T ss_pred             ----------------CHHHHHhCCcEEEECCEEEEEECCCCEEE-ECC--cEEECCEEEECCCCCCCCCCCCC--cCCE
Confidence                            123345568999988 4788887776676 555  67999999999999886443222  2234


Q ss_pred             ec---chhhhcccC---CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          202 VS---STGALALNE---VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       202 ~~---~~~~~~~~~---~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      ++   .+++..+..   .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ +++++.+.+.+.+++.||+++++
T Consensus       125 ~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~  203 (367)
T 1xhc_A          125 LTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLN  203 (367)
T ss_dssp             ECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECS
T ss_pred             EEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcC
Confidence            43   344443322   258999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEeccc
Q 011787          276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV  355 (477)
Q Consensus       276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~  355 (477)
                      +++++++  .+.  +++.     +++ +++|.|++|+|++||+++  +++.|++.+ + +|.||+++||+.|+|||+|||
T Consensus       204 ~~v~~i~--~~~--v~~~-----~g~-i~~D~vi~a~G~~p~~~l--l~~~gl~~~-~-gi~Vd~~~~t~~~~IyA~GD~  269 (367)
T 1xhc_A          204 SELLEAN--EEG--VLTN-----SGF-IEGKVKICAIGIVPNVDL--ARRSGIHTG-R-GILIDDNFRTSAKDVYAIGDC  269 (367)
T ss_dssp             CCEEEEC--SSE--EEET-----TEE-EECSCEEEECCEEECCHH--HHHTTCCBS-S-SEECCTTSBCSSTTEEECGGG
T ss_pred             CEEEEEE--eeE--EEEC-----CCE-EEcCEEEECcCCCcCHHH--HHhCCCCCC-C-CEEECCCcccCCCCEEEeEee
Confidence            9999996  233  4443     456 999999999999999974  678888876 3 499999999999999999999


Q ss_pred             CCC----CCchhHHHHHHHHHHHHHcCCCCCCCCCCCce--EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccch
Q 011787          356 IPG----PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPG--VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAK  429 (477)
Q Consensus       356 ~~~----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (477)
                      +..    +.+++.|..||+.||+||++...++++ ..|+  +.|++|+++++|++++++.    +       +       
T Consensus       270 a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~----~-------~-------  330 (367)
T 1xhc_A          270 AEYSGIIAGTAKAAMEQARVLADILKGEPRRYNF-KFRSTVFKFGKLQIAIIGNTKGEGK----W-------I-------  330 (367)
T ss_dssp             EEBTTBCCCSHHHHHHHHHHHHHHHTTCCCCCCS-SCCEEEEEETTEEEEEEECCSSCEE----E-------E-------
T ss_pred             eecCCCCccHHHHHHHHHHHHHHHhcCCCccCCC-CCCceEEEECCceEEEECCCCCCCc----c-------c-------
Confidence            842    468999999999999999987654444 2343  4799999999999988521    0       0       


Q ss_pred             hcCCCceEEEEEEECCCCeEEEEEEEcCChH
Q 011787          430 AIDDAEGIVKILAEKETDKILGVHIMAPNAG  460 (477)
Q Consensus       430 ~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~  460 (477)
                           .+|+|++++  +++|+|++++|+.+.
T Consensus       331 -----~~~~k~~~~--~~~ilG~~~~g~~~~  354 (367)
T 1xhc_A          331 -----EDNTKVFYE--NGKIIGAVVFNDIRK  354 (367)
T ss_dssp             -----ETTEEEEC-------CEEEEESCHHH
T ss_pred             -----ceEEEEEEE--CCEEEEEEEECChHH
Confidence                 478999997  489999999998765

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=7.6e-45  Score=355.68  Aligned_cols=345  Identities=19%  Similarity=0.297  Sum_probs=261.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ..++.+|+|||||+||++||..|.+.+.+|+|||+++.++..    .  |        .....+.     ..........
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~----~--~--------~l~~~l~-----g~~~~~~l~~   66 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY----R--P--------RLNEIIA-----KNKSIDDILI   66 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC----G--G--------GHHHHHH-----SCCCGGGTBS
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc----c--C--------hhhHHHc-----CCCCHHHccC
Confidence            345689999999999999999997778999999997665421    0  0        0000000     0011111111


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCcc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITI  196 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~  196 (477)
                                        ...+++++.+++++.+ ++..+|.....|.+.+|  .++.||+||||||++|+.+  ||.+ 
T Consensus        67 ------------------~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~~~yd~lvlAtG~~p~~p~i~G~~-  125 (385)
T 3klj_A           67 ------------------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVPHAD-  125 (385)
T ss_dssp             ------------------SCHHHHHHTTCEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTCS-
T ss_pred             ------------------CCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEecCCCcCCCCCCCCC-
Confidence                              1234556779999887 68888887778888888  6899999999999988644  4433 


Q ss_pred             CCceEec---chhhhcccC---CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHhcC
Q 011787          197 DEKRIVS---STGALALNE---VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       197 ~~~~~~~---~~~~~~~~~---~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~~g  269 (477)
                         .+++   .++...+..   .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus       126 ---~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~g  202 (385)
T 3klj_A          126 ---EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLG  202 (385)
T ss_dssp             ---CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTT
T ss_pred             ---CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCC
Confidence               3443   445444433   2789999999999999999999999999999999999885 89999999999999999


Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      |++++++.+.++                  ++++++|.||+|+|++|++++  ++.+|+..+ + +|.||++++|+.|+|
T Consensus       203 V~~~~~~~v~~i------------------g~~~~~D~vv~a~G~~p~~~~--~~~~gl~~~-~-gi~vd~~~~t~~~~I  260 (385)
T 3klj_A          203 IKIYTNSNFEEM------------------GDLIRSSCVITAVGVKPNLDF--IKDTEIASK-R-GILVNDHMETSIKDI  260 (385)
T ss_dssp             CEEECSCCGGGC------------------HHHHHHSEEEECCCEEECCGG--GTTSCCCBS-S-SEEECTTCBCSSTTE
T ss_pred             CEEEeCCEEEEc------------------CeEEecCeEEECcCcccChhh--hhhcCCCcC-C-CEEECCCcccCCCCE
Confidence            999999887665                  246889999999999999986  677888876 3 499999999999999


Q ss_pred             EEecccCC----CCCchhHHHHHHHHHHHHHcCCCCCCCCCC-CceEEE--cCCCeeeecCCHHHHHHcCCCEEEEEEec
Q 011787          350 YAIGDVIP----GPMLAHKAEEDGVACVEFLAGKHGHVDYDK-VPGVVY--THPEVASVGKTEEQVKELGVEYRVGKFPF  422 (477)
Q Consensus       350 ya~GD~~~----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~p~~~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  422 (477)
                      ||+|||+.    .+.++..|..||+.||.||++....  |.. .|++.+  ++++++++|+++.+.    .+. +.    
T Consensus       261 yA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~~~----~~~-~~----  329 (385)
T 3klj_A          261 YACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDAS--YSEIIPSPILKVSGISIISCGDIENNK----PSK-VF----  329 (385)
T ss_dssp             EECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCC--CCCCCCCCEEEETTEEEEEESCCTTCC----CSE-EE----
T ss_pred             EEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCCcC--CCCCCCcEEEEeCCCcEEEEcCCCCCC----CeE-EE----
Confidence            99999996    4678999999999999999987653  433 355444  788999999998652    111 11    


Q ss_pred             CccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787          423 LANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH  471 (477)
Q Consensus       423 ~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~  471 (477)
                            . ..++..|.|++++  +++|+|++++|+.+.+.  .+..+|.
T Consensus       330 ------~-~~~~~~~~~~~~~--~~~l~g~~~~g~~~~~~--~~~~~i~  367 (385)
T 3klj_A          330 ------R-STQEDKYIVCMLK--ENKIDAAAVIGDVSLGT--KLKKAID  367 (385)
T ss_dssp             ------E-EECSSCEEEEEEE--TTEEEEEEEESCHHHHH--HHHHHHH
T ss_pred             ------E-ECCCCeEEEEEEE--CCEEEEEEEECCcHHHH--HHHHHHH
Confidence                  1 1234579999995  69999999999988765  3444444

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.1e-43  Score=351.16  Aligned_cols=352  Identities=20%  Similarity=0.252  Sum_probs=262.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      .++||+|||||+||++||.+|++.|.  +|+|||+++.++.    ..+..++.++..         .     . .....+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~----~~~~~~~~~~~~---------~-----~-~~~~~~   66 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY----DRPPLSKDFMAH---------G-----D-AEKIRL   66 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB----CSGGGGTHHHHH---------C-----C-GGGSBC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc----cCCCCCHHHhCC---------C-----c-hhhhhH
Confidence            45899999999999999999999987  5999999765431    111111111000         0     0 000000


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC---CCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL---PGIT  195 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~---~g~~  195 (477)
                                          . .+++.+++++.++ +..++.....|.+.+|  .++.||+||+|||++|..+   ||.+
T Consensus        67 --------------------~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~i~~G~~  123 (408)
T 2gqw_A           67 --------------------D-CKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRALPTLQGAT  123 (408)
T ss_dssp             --------------------C-CTTSCSCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTCS
T ss_pred             --------------------H-HHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCccCCCC
Confidence                                0 3456789999986 7888876667777777  6899999999999988544   4433


Q ss_pred             cCCceE---ecchhhhcccC---CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhc
Q 011787          196 IDEKRI---VSSTGALALNE---VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       196 ~~~~~~---~~~~~~~~~~~---~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~  268 (477)
                         ..+   .+.++...+..   .+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.
T Consensus       124 ---~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~  200 (408)
T 2gqw_A          124 ---MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQ  200 (408)
T ss_dssp             ---SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHT
T ss_pred             ---CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHc
Confidence               233   34555544432   479999999999999999999999999999999999988 58999999999999999


Q ss_pred             CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCC
Q 011787          269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG  348 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~  348 (477)
                      ||++++++++++++ + +  .+++.     +++++++|.|++|+|++|++++  +++.|++.+ +| |.||+++||+.|+
T Consensus       201 GV~i~~~~~v~~i~-~-~--~v~~~-----~g~~i~~D~vi~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~t~~~~  267 (408)
T 2gqw_A          201 GVDLRFERSVTGSV-D-G--VVLLD-----DGTRIAADMVVVGIGVLANDAL--ARAAGLACD-DG-IFVDAYGRTTCPD  267 (408)
T ss_dssp             TCEEEESCCEEEEE-T-T--EEEET-----TSCEEECSEEEECSCEEECCHH--HHHHTCCBS-SS-EECCTTCBCSSTT
T ss_pred             CcEEEeCCEEEEEE-C-C--EEEEC-----CCCEEEcCEEEECcCCCccHHH--HHhCCCCCC-CC-EEECCCCccCCCC
Confidence            99999999999997 3 3  44443     4578999999999999999875  677888876 45 9999999999999


Q ss_pred             eEEecccCCCC----------CchhHHHHHHHHHHHHHcCCCCCCCCCCCceEE--EcCCCeeeecCCHHHHHHcCCCEE
Q 011787          349 VYAIGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYR  416 (477)
Q Consensus       349 vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~~G~~~~~~~~~~~~~~  416 (477)
                      |||+|||+..+          .++..|..||+.||.||++... .+|..+|++.  +++++++++|+ +..     .+..
T Consensus       268 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~p~~~~~~~~~~~~~~G~-~~~-----~~~~  340 (408)
T 2gqw_A          268 VYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA-PGYAELPWYWSDQGALRIQVAGL-ASG-----DEEI  340 (408)
T ss_dssp             EEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS-CCCCCCCEEEEEETTEEEEEEEC-SCC-----SEEE
T ss_pred             EEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC-CcCCCCCeEEEEECCceEEEECC-CCC-----CEEE
Confidence            99999999653          2678999999999999998754 2567788764  34578999998 211     1111


Q ss_pred             EEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhc
Q 011787          417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATH  471 (477)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~  471 (477)
                      +     ..    .......+|.+++++  +++|+|++++|+.+.  +..+..+|.
T Consensus       341 ~-----~~----~~~~~~~~~~~~~~~--~~~l~G~~~~g~~~~--~~~~~~~i~  382 (408)
T 2gqw_A          341 V-----RG----EVSLDAPKFTLIELQ--KGRIVGATCVNNARD--FAPLRRLLA  382 (408)
T ss_dssp             E-----ES----CCCSSSCCEEEEEEE--TTEEEEEEEESCHHH--HHHHHHHHH
T ss_pred             E-----Ec----cCCCCCCeEEEEEEe--CCEEEEEEEECChHH--HHHHHHHHH
Confidence            0     00    000114568777774  799999999998764  455666665

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=2.6e-43  Score=350.85  Aligned_cols=363  Identities=20%  Similarity=0.232  Sum_probs=267.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+||+|||||+||++||..|++.|.  +|+|||+++.+...    .+..++.++.              ...........
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~~l~~~~~~--------------~~~~~~~~~~~   65 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH----LPPLSKAYLA--------------GKATAESLYLR   65 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC----SGGGGTTTTT--------------TCSCSGGGBSS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc----CCCCcHHHhC--------------CCCChHHhccc
Confidence            5899999999999999999999987  79999996543211    0000110000              00000000010


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~  197 (477)
                                        ..+++++.+++++.+. +..++.....|.+.+|  .++.||+||+|||++|..+  |+.+..
T Consensus        66 ------------------~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~p~~~~i~G~~~~  125 (431)
T 1q1r_A           66 ------------------TPDAYAAQNIQLLGGTQVTAINRDRQQVILSDG--RALDYDRLVLATGGRPRPLPVASGAVG  125 (431)
T ss_dssp             ------------------CHHHHHHTTEEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTHHH
T ss_pred             ------------------CHHHHHhCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEcCCCCccCCCCCCcccC
Confidence                              1234456799998874 6777765556777777  6799999999999988544  343211


Q ss_pred             C-ceE---ecchhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-CCHHHHHHHHHHHHhcC
Q 011787          198 E-KRI---VSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       198 ~-~~~---~~~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-~~~~~~~~~~~~l~~~g  269 (477)
                      . ..+   .+.+++..+.   ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus       126 ~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G  205 (431)
T 1q1r_A          126 KANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAG  205 (431)
T ss_dssp             HSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCC
Confidence            1 003   3445554443   34899999999999999999999999999999999988874 89999999999999999


Q ss_pred             cEEEeCceEEEEEE--cCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCC
Q 011787          270 MKFMLKTKVVGVDL--SGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI  346 (477)
Q Consensus       270 v~~~~~~~v~~i~~--~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~  346 (477)
                      |++++++++++++.  +++++ .+.+.     +++++++|.||+|+|++|++++  ++.+|++.+ + +|.||+++||+.
T Consensus       206 V~i~~~~~v~~i~~~~~~~~v~~v~~~-----~G~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~-gi~Vd~~~~ts~  276 (431)
T 1q1r_A          206 VDIRTGTQVCGFEMSTDQQKVTAVLCE-----DGTRLPADLVIAGIGLIPNCEL--ASAAGLQVD-N-GIVINEHMQTSD  276 (431)
T ss_dssp             CEEECSCCEEEEEECTTTCCEEEEEET-----TSCEEECSEEEECCCEEECCHH--HHHTTCCBS-S-SEECCTTSBCSS
T ss_pred             eEEEeCCEEEEEEeccCCCcEEEEEeC-----CCCEEEcCEEEECCCCCcCcch--hhccCCCCC-C-CEEECCCcccCC
Confidence            99999999999987  44554 45554     4578999999999999999875  677888876 3 499999999999


Q ss_pred             CCeEEecccCCCCC----------chhHHHHHHHHHHHHHcCCCCCCCCCCCceEE--EcCCCeeeecCCHHHHHHcCCC
Q 011787          347 PGVYAIGDVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVE  414 (477)
Q Consensus       347 ~~vya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~~G~~~~~~~~~~~~  414 (477)
                      |+|||+|||+..+.          .+..|..||+.||.||++...  +|..+|++.  +.+.++..+|+++..     .+
T Consensus       277 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~  349 (431)
T 1q1r_A          277 PLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP--RDEAAPWFWSDQYEIGLKMVGLSEGY-----DR  349 (431)
T ss_dssp             TTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC--CCCCCCEEEEEETTEEEEEEECCTTC-----SE
T ss_pred             CCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC--CCCCCCeEEEEECCceEEEEeCCCCC-----CE
Confidence            99999999996532          578899999999999998754  566788753  234678899987631     11


Q ss_pred             EEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHHHHHhcC
Q 011787          415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMATHD  472 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~~~~~~~  472 (477)
                      +.. .          ...+...|++++.  ++++|+|++++|+.+.+.+...+++...
T Consensus       350 ~~~-~----------~~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~  394 (431)
T 1q1r_A          350 IIV-R----------GSLAQPDFSVFYL--QGDRVLAVDTVNRPVEFNQSKQIITDRL  394 (431)
T ss_dssp             EEE-E----------EETTTTEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHHTTC
T ss_pred             EEE-E----------ccCCCCeEEEEEE--eCCEEEEEEEECChHHHHHHHHHHHCCC
Confidence            111 0          0123346766654  4799999999999999999888777653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.5e-41  Score=335.74  Aligned_cols=349  Identities=21%  Similarity=0.324  Sum_probs=263.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCe--EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLK--TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~--V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      .++||+|||||+||++||.+|++.|.+  |+|||+++.++...     .|   + ...         +............
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~-----~~---l-~~~---------~~~~~~~~~~~~~   69 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYER-----PP---L-SKE---------YLAREKTFERICI   69 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCS-----GG---G-GTT---------TTTTSSCSGGGBS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCc-----cc---C-CHH---------HHcCCCCHHHhcc
Confidence            458999999999999999999999877  99999976543211     00   0 000         0000000111111


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCcc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITI  196 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~  196 (477)
                      .                  ...++.+.+++++.+ .+..++.....|.+.++  ..+.||+||||||++|..+  |+.+ 
T Consensus        70 ~------------------~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~-  128 (415)
T 3lxd_A           70 R------------------PAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDG--SAIEYGKLIWATGGDPRRLSCVGAD-  128 (415)
T ss_dssp             S------------------CHHHHHHTTEEEEETCCEEEEETTTTEEEETTS--CEEEEEEEEECCCEECCCCBTTSSC-
T ss_pred             C------------------CHHHHHHCCcEEEeCCEEEEEECCCCEEEECCC--CEEEeeEEEEccCCccCCCCCCCcc-
Confidence            1                  124456679999998 78888888778888777  6899999999999988644  4433 


Q ss_pred             CCceEe---cchhhhccc---CC-CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhc
Q 011787          197 DEKRIV---SSTGALALN---EV-PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       197 ~~~~~~---~~~~~~~~~---~~-~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~  268 (477)
                       ...++   +.+++..+.   .. +++++|||+|++|+|+|..+++.|.+|+++++.+++++ .+++++.+.+.+.+++.
T Consensus       129 -~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~  207 (415)
T 3lxd_A          129 -LAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAH  207 (415)
T ss_dssp             -CBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHT
T ss_pred             -ccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhC
Confidence             23333   444444332   23 89999999999999999999999999999999999987 58999999999999999


Q ss_pred             CcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCC
Q 011787          269 KMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP  347 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~  347 (477)
                      ||++++++.|++++.+++++ .+++.     +++++++|.||+|+|++|++++  ++..|+..+ + +|.||++++|+.|
T Consensus       208 GV~i~~~~~v~~i~~~~~~v~~v~l~-----dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~-gi~vd~~~~t~~~  278 (415)
T 3lxd_A          208 GVDLRTGAAMDCIEGDGTKVTGVRMQ-----DGSVIPADIVIVGIGIVPCVGA--LISAGASGG-N-GVDVDEFCRTSLT  278 (415)
T ss_dssp             TCEEEETCCEEEEEESSSBEEEEEES-----SSCEEECSEEEECSCCEESCHH--HHHTTCCCS-S-SEECCTTCBCSST
T ss_pred             CCEEEECCEEEEEEecCCcEEEEEeC-----CCCEEEcCEEEECCCCccChHH--HHhCCCCcC-C-CEEECCCCCcCCC
Confidence            99999999999998876665 46654     5678999999999999999975  677888877 3 4999999999999


Q ss_pred             CeEEecccCCCCC-----------chhHHHHHHHHHHHHHcCCCCCCCCCCCceEE--EcCCCeeeecCCHHHHHHcCCC
Q 011787          348 GVYAIGDVIPGPM-----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVE  414 (477)
Q Consensus       348 ~vya~GD~~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~~G~~~~~~~~~~~~  414 (477)
                      +|||+|||+..+.           +++.|..||+.||+||++...  +|..+|++.  +++..+..+|+++..     -+
T Consensus       279 ~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~  351 (415)
T 3lxd_A          279 DVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV--PYKATPWFWSNQYDLKLQTVGLSTGH-----DN  351 (415)
T ss_dssp             TEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCC--CCCCCCEEEEEETTEEEEEEECCTTC-----SE
T ss_pred             CEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCC--CCCCCCeeEeeeCCcEEEEEeCCCCC-----CE
Confidence            9999999996543           468999999999999998764  577777643  345678888887431     11


Q ss_pred             EEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCCh
Q 011787          415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA  459 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~  459 (477)
                      + +..          ...+...|.++++.  +++|+|+..+|...
T Consensus       352 ~-~~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~  383 (415)
T 3lxd_A          352 A-VLR----------GDPATRSFSVVYLK--GGKVVALDCVNMVK  383 (415)
T ss_dssp             E-EEE----------EEGGGTEEEEEEEE--TTEEEEEEEESCHH
T ss_pred             E-EEE----------ecCCCCeEEEEEEE--CCEEEEEEEECChH
Confidence            1 110          01223568888884  68999999999853

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=2.2e-42  Score=342.32  Aligned_cols=347  Identities=20%  Similarity=0.309  Sum_probs=260.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCe--EEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLK--TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~--V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +||+|||||+||++||..|++.|.+  |+|||+++.++..      .|.   +...         +.......... .. 
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~------~~~---l~~~---------~~~g~~~~~~~-~~-   62 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD------RPS---LSKA---------VLDGSLERPPI-LA-   62 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC------SGG---GGTH---------HHHTSSSSCCB-SS-
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC------Ccc---ccHH---------HhCCCCCHHHh-cC-
Confidence            5899999999999999999999876  9999997654321      000   0000         00001111111 11 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCccCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDE  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~~~~  198 (477)
                                       ...++.+.+++++.+ ++..++.....|.+.+|  .++.||+||||||++|..+  |+..  .
T Consensus        63 -----------------~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~ipG~~--~  121 (410)
T 3ef6_A           63 -----------------EADWYGEARIDMLTGPEVTALDVQTRTISLDDG--TTLSADAIVIATGSRARTMALPGSQ--L  121 (410)
T ss_dssp             -----------------CTTHHHHTTCEEEESCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTTT--S
T ss_pred             -----------------CHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEccCCcccCCCCCCcc--c
Confidence                             113455679999999 78888888778888787  6899999999999998644  5543  2


Q ss_pred             ceEe---cchhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcE
Q 011787          199 KRIV---SSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       199 ~~~~---~~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~  271 (477)
                      ..++   +.++...+.   ..+++++|||+|++|+|+|..+++.|.+|+++++.+++++ .+++++.+.+.+.++++||+
T Consensus       122 ~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~  201 (410)
T 3ef6_A          122 PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQ  201 (410)
T ss_dssp             TTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCE
T ss_pred             cceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCE
Confidence            3333   444444332   3489999999999999999999999999999999998876 47899999999999999999


Q ss_pred             EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      +++++.|++++.++....+++.     +++++++|.||+|+|++|+.++  ++.+|+..+  ++|.||++++|+.|+|||
T Consensus       202 i~~~~~v~~i~~~~~~~~v~~~-----dg~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~--~gi~vd~~~~t~~~~IyA  272 (410)
T 3ef6_A          202 VELGTGVVGFSGEGQLEQVMAS-----DGRSFVADSALICVGAEPADQL--ARQAGLACD--RGVIVDHCGATLAKGVFA  272 (410)
T ss_dssp             EECSCCEEEEECSSSCCEEEET-----TSCEEECSEEEECSCEEECCHH--HHHTTCCBS--SSEECCTTSBCSSTTEEE
T ss_pred             EEeCCEEEEEeccCcEEEEEEC-----CCCEEEcCEEEEeeCCeecHHH--HHhCCCccC--CeEEEccCeeECCCCEEE
Confidence            9999999999876544456664     5678999999999999999875  678888887  359999999999999999


Q ss_pred             ecccCCCCC---------chhHHHHHHHHHHHHHcCCCCCCCCCCCceEE--EcCCCeeeecCCHHHHHHcCCCEEEEEE
Q 011787          352 IGDVIPGPM---------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYRVGKF  420 (477)
Q Consensus       352 ~GD~~~~~~---------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~~G~~~~~~~~~~~~~~~~~~  420 (477)
                      +|||+..+.         +++.|..||+.||+||++...  +|..+|++.  +++..+..+|+++..      + +... 
T Consensus       273 ~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~~------~-~~~~-  342 (410)
T 3ef6_A          273 VGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNV--SAPQLPVSWTEIAGHRMQMAGDIEGP------G-DFVS-  342 (410)
T ss_dssp             CGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCCC--CCCBCCEEEEEETTEEEEEESCSSSS------S-EEEE-
T ss_pred             EEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCCC--CCCCCCeeEEEECCceEEEEcCCCCC------C-EEEE-
Confidence            999996543         489999999999999998753  567777643  345577888876532      1 0100 


Q ss_pred             ecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChH
Q 011787          421 PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG  460 (477)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~  460 (477)
                              ....+...|.++++.  +++|+|+.++|....
T Consensus       343 --------~~~~~~~~~~~~~~~--~~~l~g~~~~~~~~~  372 (410)
T 3ef6_A          343 --------RGMPGSGAALLFRLQ--ERRIQAVVAVDAPRD  372 (410)
T ss_dssp             --------ESCTTSSSEEEEEEE--TTEEEEEEEESCHHH
T ss_pred             --------EeeCCCCeEEEEEEE--CCEEEEEEEECChHH
Confidence                    001123457777774  789999999998543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=5.6e-41  Score=331.93  Aligned_cols=349  Identities=22%  Similarity=0.299  Sum_probs=260.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +||+|||||+||++||.+|++.|+  +|+|||+++..+...     .|   + ...         +............. 
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~-----~~---l-~~~---------~l~~~~~~~~~~~~-   62 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQR-----PP---L-SKA---------YLKSGGDPNSLMFR-   62 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCS-----GG---G-GTG---------GGGSCCCTTSSBSS-
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCC-----cc---C-CHH---------HHCCCCCHHHccCC-
Confidence            689999999999999999999988  899999976443210     00   0 000         00001111111111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                                       ...++.+.+++++..++..++.....+.+.+|  ..+.||+||+|||++|..++..+.+...+
T Consensus        63 -----------------~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~i~g~~~~~v  123 (404)
T 3fg2_P           63 -----------------PEKFFQDQAIELISDRMVSIDREGRKLLLASG--TAIEYGHLVLATGARNRMLDVPNASLPDV  123 (404)
T ss_dssp             -----------------CHHHHHHTTEEEECCCEEEEETTTTEEEESSS--CEEECSEEEECCCEEECCCCSTTTTSTTE
T ss_pred             -----------------CHHHHHhCCCEEEEEEEEEEECCCCEEEECCC--CEEECCEEEEeeCCCccCCCCCCCCCCcE
Confidence                             12345567899888778888887777888787  68999999999999885443222223334


Q ss_pred             e---cchhhhcc---cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEe
Q 011787          202 V---SSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       202 ~---~~~~~~~~---~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      +   +..+...+   ...+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++
T Consensus       124 ~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~  203 (404)
T 3fg2_P          124 LYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHY  203 (404)
T ss_dssp             ECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEEC
T ss_pred             EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEE
Confidence            4   33343332   23589999999999999999999999999999999999877 58999999999999999999999


Q ss_pred             CceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEec
Q 011787          275 KTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG  353 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~G  353 (477)
                      ++.|++++.+++++. +++.     +++++++|.||+|+|++|+.++  ++..|+..+ +| |.||++++|+.|+|||+|
T Consensus       204 ~~~v~~i~~~~~~v~~V~~~-----dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~G-i~vd~~~~t~~~~iya~G  274 (404)
T 3fg2_P          204 GVRATEIAAEGDRVTGVVLS-----DGNTLPCDLVVVGVGVIPNVEI--AAAAGLPTA-AG-IIVDQQLLTSDPHISAIG  274 (404)
T ss_dssp             SCCEEEEEEETTEEEEEEET-----TSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EEECTTSBCSSTTEEECG
T ss_pred             CCEEEEEEecCCcEEEEEeC-----CCCEEEcCEEEECcCCccCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEEee
Confidence            999999988766654 6654     5678999999999999999975  677888887 34 999999999999999999


Q ss_pred             ccCCCCC----------chhHHHHHHHHHHHHHcCCCCCCCCCCCceEE--EcCCCeeeecCCHHHHHHcCCCEEEEEEe
Q 011787          354 DVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYRVGKFP  421 (477)
Q Consensus       354 D~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  421 (477)
                      ||+..+.          .+..|..||+.||+||++...  +|..+|++.  +++..+..+|++..      .+-.+..  
T Consensus       275 D~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~------~~~~~~~--  344 (404)
T 3fg2_P          275 DCALFESVRFGETMRVESVQNATDQARCVAARLTGDAK--PYDGYPWFWSDQGDDKLQIVGLTAG------FDQVVIR--  344 (404)
T ss_dssp             GGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCC--CCCCCCEEEEEETTEEEEEEECCTT------CCEEEEE--
T ss_pred             cceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCC--CCCCCCceEeEECCcEEEEEeCCCC------CCEEEEE--
Confidence            9996432          478999999999999998763  577777643  44557778887642      1111111  


Q ss_pred             cCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCCh
Q 011787          422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA  459 (477)
Q Consensus       422 ~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~  459 (477)
                              ...+...|.++++.  +++++|+.++|...
T Consensus       345 --------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~  372 (404)
T 3fg2_P          345 --------GSVAERSFSAFCYK--AGKLIGIESVNRAA  372 (404)
T ss_dssp             --------EETTTTEEEEEEEE--TTEEEEEEEESCHH
T ss_pred             --------ecCCCCcEEEEEEE--CCEEEEEEEeCCHH
Confidence                    11234568888885  68999999999863

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=7.4e-41  Score=319.91  Aligned_cols=293  Identities=26%  Similarity=0.371  Sum_probs=213.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+|||+||||||||++||.+|++.|++|+|||+ ..+||+|.+.+|+|..+-..                      ....
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~~~i~~~p~~~----------------------~~~~   61 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTEEVENFPGFE----------------------MITG   61 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGCSCBCCSTTCS----------------------SBCH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeecccccCCcCCcc----------------------ccch
Confidence            369999999999999999999999999999998 68999999999986432100                      0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCcc-C
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI-D  197 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~-~  197 (477)
                      .++.           ........+....+..+. ....+.....+...++  .++.||+||||||++|+  .+||... .
T Consensus        62 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~liiAtGs~~~~~~ipG~~~~~  128 (312)
T 4gcm_A           62 PDLS-----------TKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGN--KELTAKAVIIATGAEYKKIGVPGEQELG  128 (312)
T ss_dssp             HHHH-----------HHHHHHHHHTTCEEEECCCCEEEECSSCEEEECSS--CEEEEEEEEECCCEEECCCCCTTTTTTB
T ss_pred             HHHH-----------HHHHHHHhhccccccceeeeeeeeeecceeeccCC--eEEEeceeEEcccCccCcCCCCChhhhC
Confidence            1111           111223334455554442 2222222223333444  68999999999999885  4566542 2


Q ss_pred             CceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      ...+.+..........+++++|||||++|+|+|..|++.|.+||++++.+++++...     ...+.+++.++.......
T Consensus       129 ~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  203 (312)
T 4gcm_A          129 GRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRI-----LQDRAFKNDKIDFIWSHT  203 (312)
T ss_dssp             TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHH-----HHHHHHHCTTEEEECSEE
T ss_pred             CccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchh-----HHHHHHHhcCcceeeecc
Confidence            234444444444445689999999999999999999999999999999998765321     224556777888888888


Q ss_pred             EEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          278 VVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       278 v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                      +..+...+.... ........+++..+++|.|++++|..|+...  ++..++. +++|+|.||+++|||+|||||+|||+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~--~~~~g~~-~~~G~I~vd~~~~Ts~pgIyA~GDv~  280 (312)
T 4gcm_A          204 LKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAP--FKDLGIT-NDVGYIVTKDDMTTSVPGIFAAGDVR  280 (312)
T ss_dssp             EEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GGGGTCB-CTTSCBCCCTTSBCSSTTEEECSTTB
T ss_pred             eeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchh--HHhccee-cCCCeEeeCCCCccCCCCEEEEeecC
Confidence            777766555433 3333445567789999999999999999986  5666665 55789999999999999999999999


Q ss_pred             C-CCCchhHHHHHHHHHHHHHcC
Q 011787          357 P-GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       357 ~-~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      + .+.+++.|+.||+.||.+|..
T Consensus       281 ~~~~~~~~~A~~~G~~AA~~i~~  303 (312)
T 4gcm_A          281 DKGLRQIVTATGDGSIAAQSAAE  303 (312)
T ss_dssp             SCSCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHH
Confidence            6 457899999999999999964

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=1.5e-40  Score=318.19  Aligned_cols=299  Identities=23%  Similarity=0.281  Sum_probs=217.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      |+..|||+||||||||++||.+|+++|++|+|||+ ...||.|.+ +|+|++.++...            .+++   ..+
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~-~~~gg~~~~-G~~~~~~~i~~~------------~g~~---~~i   63 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEG-FMAGGVAAG-GQLTTTTIIENF------------PGFP---NGI   63 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECC-SSGGGCCTT-CGGGGSSEECCS------------TTCT---TCE
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCcccC-CCcCChHHhhhc------------cCCc---ccC
Confidence            45579999999999999999999999999999998 567888876 787765432211            0111   011


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEe--cCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT  195 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~  195 (477)
                      +..++           .........+.++++....+...  +.....+.+.++  .++.||+||||||++|+  .+||.+
T Consensus        64 ~~~~l-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~liiATG~~~~~~~ipG~~  130 (314)
T 4a5l_A           64 DGNEL-----------MMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEG--KEVLTKSVIIATGATAKRMHVPGED  130 (314)
T ss_dssp             EHHHH-----------HHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTC--CEEEEEEEEECCCEEECCCCCTTHH
T ss_pred             CHHHH-----------HHHHHHHHhhcCcEEEEeEEEEeecCCCceEEEECCC--eEEEEeEEEEcccccccccCCCccc
Confidence            22222           22233445566777776655443  334455556665  78999999999999885  455543


Q ss_pred             cC-CceEecchhhhcc--cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          196 ID-EKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       196 ~~-~~~~~~~~~~~~~--~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      .. ...+.........  ...+++++|||+|++|+|+|..|+++|.+||++++.+....  +..   ...+.+...++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~--~~~---~~~~~~~~~~~~~  205 (314)
T 4a5l_A          131 KYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA--SKT---MQERVLNHPKIEV  205 (314)
T ss_dssp             HHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHH---HHHHHHTCTTEEE
T ss_pred             cccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc--cch---hhhhhhcccceee
Confidence            21 2233333333322  23579999999999999999999999999999998776532  222   2344556678899


Q ss_pred             EeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          273 MLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      +....+.++...++.. .+.+.....++++++++|.|++++|++||++++  + .++..+++|.+ ||+++|||+|||||
T Consensus       206 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l--~-~~~~~~~~G~i-v~~~~~Ts~pgIyA  281 (314)
T 4a5l_A          206 IWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFL--G-GQVKTADDGYI-LTEGPKTSVDGVFA  281 (314)
T ss_dssp             ECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCB-CCBTTBCSSTTEEE
T ss_pred             EeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHh--c-ccceEcCCeeE-eCCCCccCCCCEEE
Confidence            9999999988765543 355555566778899999999999999999874  2 34777777755 89999999999999


Q ss_pred             ecccCCCCC-chhHHHHHHHHHHHHHc
Q 011787          352 IGDVIPGPM-LAHKAEEDGVACVEFLA  377 (477)
Q Consensus       352 ~GD~~~~~~-~~~~A~~~g~~aa~~i~  377 (477)
                      +|||++.|. ++..|+.||+.||.++.
T Consensus       282 ~GDv~~~~~~~~~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          282 CGDVCDRVYRQAIVAAGSGCMAALSCE  308 (314)
T ss_dssp             CSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCcchHHHHHHHHHHHHHHHHH
Confidence            999998764 88999999999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=9.8e-39  Score=307.03  Aligned_cols=295  Identities=24%  Similarity=0.271  Sum_probs=218.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.++||+|||||+||+++|..|++.|++|+|||++ .+||.|.+..+.....                  ++..   .++
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~------------------~~~~---~~~   63 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFP------------------GFPE---PIA   63 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCST------------------TCSS---CBC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCC------------------CCCC---CCC
Confidence            34689999999999999999999999999999997 7899876654321100                  0000   111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC---E--EEEEecCCceEEEEecEEEEccCCCCCC--CCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS---E--VSVDTIEGGNTVVKGKNIIIATGSDVKS--LPG  193 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~--~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g  193 (477)
                      ...           +...+.+.+++.+++++.+.+..++..   .  +.+.+.+|  ..+.||+||+|||+.|..  +|+
T Consensus        64 ~~~-----------~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~i~g  130 (325)
T 2q7v_A           64 GME-----------LAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYN--GEYRAKAVILATGADPRKLGIPG  130 (325)
T ss_dssp             HHH-----------HHHHHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESS--CEEEEEEEEECCCEEECCCCCTT
T ss_pred             HHH-----------HHHHHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCC
Confidence            111           222334455667898888777666533   2  56666666  679999999999998753  344


Q ss_pred             Ccc-CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          194 ITI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       194 ~~~-~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      ... ....+++..........+++++|||+|.+|+|+|..|++.|.+|+++++.+.+..  ++.+.   .+.+++.||++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~---~~l~~~~gv~i  205 (325)
T 2q7v_A          131 EDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA--NKVAQ---ARAFANPKMKF  205 (325)
T ss_dssp             TTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS--CHHHH---HHHHTCTTEEE
T ss_pred             hhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc--chHHH---HHHHhcCCceE
Confidence            331 1133444433333444579999999999999999999999999999999886542  33332   23334569999


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                      +++++++++..++....+.+.+..+++..++++|.|++|+|++||.++  +++. +.++++|+|.||++++|+.|+|||+
T Consensus       206 ~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~-~~~~~~g~i~vd~~~~t~~~~vya~  282 (325)
T 2q7v_A          206 IWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAF--VKDT-VSLRDDGYVDVRDEIYTNIPMLFAA  282 (325)
T ss_dssp             ECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCBTTTBCSSTTEEEC
T ss_pred             ecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHH--Hhhh-cccCCCccEecCCCCccCCCCEEEe
Confidence            999999999875433356665333444568999999999999999876  4555 7778889999999999999999999


Q ss_pred             cccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          353 GDVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       353 GD~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      |||+.. +.++..|..||+.||.||..
T Consensus       283 GD~~~~~~~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          283 GDVSDYIYRQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             STTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ecccCccHHHHHHHHHHHHHHHHHHHH
Confidence            999986 68999999999999999974

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=6.6e-39  Score=324.26  Aligned_cols=327  Identities=18%  Similarity=0.210  Sum_probs=228.8

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccc
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS  116 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~  116 (477)
                      .++.++||+|||||+||++||..|++.  +.+|+|||+++.++    +..|.+++.++......  ........++....
T Consensus         7 ~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~----y~r~~lsk~l~~~~~~~--~~~~~~~~~~~~~~   80 (493)
T 1m6i_A            7 KAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP----YMRPPLSKELWFSDDPN--VTKTLRFKQWNGKE   80 (493)
T ss_dssp             -CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC----BCSGGGGTGGGCC--CT--HHHHCEEECTTSCE
T ss_pred             CCCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC----CCCCCCCHHhhcCCccc--hhhccccccccccc
Confidence            345578999999999999999999887  89999999977654    22344455544322110  00000000110000


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCc
Q 011787          117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT  195 (477)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~  195 (477)
                      ..+.+.....+..     . ..+ ....+.+++++.+ .+..++....+|.+.+|  .++.||+||||||++|+.+|..+
T Consensus        81 ~~~~~~~~~~~~~-----~-~~l-~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g--~~i~yd~lviATGs~p~~~~~~~  151 (493)
T 1m6i_A           81 RSIYFQPPSFYVS-----A-QDL-PHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTPRSLSAID  151 (493)
T ss_dssp             EESBSSCGGGSBC-----T-TTT-TTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEECCCHHHH
T ss_pred             ccccccchHhhcc-----h-hhh-hhhhcCCeEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCCcc
Confidence            0000000000000     0 000 0012468999987 67777766667777777  67999999999999987655322


Q ss_pred             cC----CceE---ecchhhhccc---CCCCeeEEEcccHHHHHHHHHHHH----cCCcEEEEEeCCCcCC-CCCHHHHHH
Q 011787          196 ID----EKRI---VSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFAADIVP-SMDGEIRKQ  260 (477)
Q Consensus       196 ~~----~~~~---~~~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~----~g~~Vtli~~~~~~~~-~~~~~~~~~  260 (477)
                      ..    ...+   .+.+++..+.   ..+++++|||+|++|+|+|..|++    .|.+|+++++.+.+++ .+++++.+.
T Consensus       152 ~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~  231 (493)
T 1m6i_A          152 RAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNW  231 (493)
T ss_dssp             TSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHH
T ss_pred             cccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHH
Confidence            11    1122   2344444333   248999999999999999999876    5788999998876654 578889999


Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecC-CCCeecC
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVN  339 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~g~i~vd  339 (477)
                      +.+.++++||++++++.|++++.+++.+.+++.     +++++++|.||+|+|.+||+.+  ++.+|+++++ +|+|.||
T Consensus       232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~-----dG~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~~~~ggi~Vd  304 (493)
T 1m6i_A          232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLK-----DGRKVETDHIVAAVGLEPNVEL--AKTGGLEIDSDFGGFRVN  304 (493)
T ss_dssp             HHHHHHTTTCEEECSCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCEEECCTT--HHHHTCCBCTTTCSEECC
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEEC-----CCCEEECCEEEECCCCCccHHH--HHHcCCccccCCCcEEEC
Confidence            999999999999999999999877666666664     5578999999999999999985  6778888875 6899999


Q ss_pred             CCCCCCCCCeEEecccCCCC---------CchhHHHHHHHHHHHHHcCCCCCCCCCCCce
Q 011787          340 ERFATNIPGVYAIGDVIPGP---------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPG  390 (477)
Q Consensus       340 ~~l~t~~~~vya~GD~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~  390 (477)
                      ++||| .|+|||+|||+..+         ..+..|..||+.||.||++...  +|...|+
T Consensus       305 ~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~--~~~~~~~  361 (493)
T 1m6i_A          305 AELQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK--PYWHQSM  361 (493)
T ss_dssp             TTCEE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC--CCCCCCE
T ss_pred             CCccc-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCC--CcCCcCc
Confidence            99998 69999999999532         2466899999999999998754  4555565

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=1.7e-38  Score=304.93  Aligned_cols=292  Identities=24%  Similarity=0.289  Sum_probs=222.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||+++|.+|++.|++|+|||++  +||.|.+.+......                  +..    .... 
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~------------------~~~----~~~~-   69 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYL------------------GLI----EIQA-   69 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCST------------------TST----TEEH-
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccC------------------CCC----CCCH-
Confidence            589999999999999999999999999999996  899876543221100                  000    0011 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCC--EEEEEecCCceEEEEecEEEEccCCCCCC--CCCCcc-C
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITI-D  197 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~~-~  197 (477)
                                ..+...+.+.+.+.+++++...+..++..  .+.+.+.++  ..+.||+||+|||+.|..  +|+... .
T Consensus        70 ----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~~~  137 (323)
T 3f8d_A           70 ----------SDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRK--GEFKADSVILGIGVKRRKLGVPGEQEFA  137 (323)
T ss_dssp             ----------HHHHHHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSS--CEEEEEEEEECCCCEECCCCCTTTTTTB
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCC--CEEEcCEEEECcCCCCccCCCCchhhhc
Confidence                      11233344556667888877777666543  567777776  689999999999998753  344432 1


Q ss_pred             CceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      ...+............+++++|+|+|.+++|+|..|.+.|.+|+++++.+.+++  +++.   +.+.+++.||+++++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~~gv~~~~~~~  212 (323)
T 3f8d_A          138 GRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPIY---VETVKKKPNVEFVLNSV  212 (323)
T ss_dssp             TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEE
T ss_pred             CCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHHH---HHHHHhCCCcEEEeCCE
Confidence            133434333333444589999999999999999999999999999999988765  3332   33344455999999999


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      +++++.+++...+++.+..+++..++++|.|++|+|++|+.++  ++..|+.++++|+|.||++++|+.|+|||+|||++
T Consensus       213 v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~  290 (323)
T 3f8d_A          213 VKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDF--AKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS  290 (323)
T ss_dssp             EEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHH--HHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBS
T ss_pred             EEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhH--HhhcCeeecCCCcEecCCCceecCCCEEEcceecC
Confidence            9999877555557776544455568999999999999999775  67888999999999999999999999999999998


Q ss_pred             C---CCchhHHHHHHHHHHHHHcC
Q 011787          358 G---PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       358 ~---~~~~~~A~~~g~~aa~~i~~  378 (477)
                      .   +..+..|..||+.||.+|..
T Consensus       291 ~~~~~~~~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          291 AWLGFRQVITAVAQGAVAATSAYR  314 (323)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccceeehhhHHHHHHHHHHH
Confidence            5   78999999999999999863

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=5.3e-38  Score=300.00  Aligned_cols=293  Identities=23%  Similarity=0.253  Sum_probs=217.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ++||+|||||+||+++|..|++.|+ +|+|+|+ ..+||.|.+..+.....                  ++.   ..++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~-~~~gg~~~~~~~~~~~~------------------~~~---~~~~~   58 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEK-GMPGGQITGSSEIENYP------------------GVK---EVVSG   58 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECS-SSTTCGGGGCSCBCCST------------------TCC---SCBCH
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcC-CCCCcccccccccccCC------------------CCc---ccCCH
Confidence            3799999999999999999999999 9999999 57889876654322110                  000   01122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCc-c
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGIT-I  196 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~-~  196 (477)
                      ..           +...+...+.+.+++++.+++..++  .+.+.+.+.++  ..+.||+||+|||+.|..+  |+.. .
T Consensus        59 ~~-----------~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~~~g~~~~  125 (311)
T 2q0l_A           59 LD-----------FMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDG--KTFEAKSVIIATGGSPKRTGIKGESEY  125 (311)
T ss_dssp             HH-----------HHHHHHHHHHTTSCEEECSCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCEEECCCCCBTHHHH
T ss_pred             HH-----------HHHHHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCC--CEEECCEEEECCCCCCCCCCCCChhhc
Confidence            22           2222334456678888776665554  45566766666  5799999999999887543  3332 1


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHH-hcCcEEEeC
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE-KQKMKFMLK  275 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~~  275 (477)
                      ....+++..........+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.  .++.+    .+.+. +.||+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~----~~~l~~~~gv~v~~~  199 (311)
T 2q0l_A          126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPIT----LEHAKNNDKIEFLTP  199 (311)
T ss_dssp             BTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHHH----HHHHHTCTTEEEETT
T ss_pred             cCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHHH----HHHHhhCCCeEEEeC
Confidence            123344444444444557999999999999999999999999999999988763  34443    33444 479999999


Q ss_pred             ceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc----eeecCCCCeecCCCCCCCCCCeE
Q 011787          276 TKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG----VETDKMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       276 ~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g----l~~~~~g~i~vd~~l~t~~~~vy  350 (477)
                      ++++++..+++++ .+.+....++...++++|.|++|+|++|++++  ++..+    +.++++|+|.||+++||+.|+||
T Consensus       200 ~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vy  277 (311)
T 2q0l_A          200 YVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAV--LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLF  277 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGG--GBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEE
T ss_pred             CEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhh--hhcccccceeEeccCCCEEeCCccccCCCCeE
Confidence            9999998775554 45555323344458999999999999999876  45553    88888899999999999999999


Q ss_pred             EecccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          351 AIGDVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       351 a~GD~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      |+|||+.. |.+++.|..||+.||.||..
T Consensus       278 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          278 AAGDIRIFAPKQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             ECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EcccccCcchHHHHHHHHhHHHHHHHHHH
Confidence            99999986 68999999999999999863

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=7.7e-38  Score=299.96  Aligned_cols=294  Identities=24%  Similarity=0.333  Sum_probs=217.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      |+.++||+|||||+||+++|..|++.|++|+|+|+ ..+||.|.........+                  ++    ...
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~~~~------------------~~----~~~   69 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLVENYL------------------GF----KSI   69 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCBCCBT------------------TB----SSB
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchhhhcC------------------CC----ccc
Confidence            44468999999999999999999999999999999 67888876544321100                  00    001


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGIT  195 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~  195 (477)
                      ....           +...+...+++.+++++.+++..++  .+.+.|.+ ++  .++.||+||+|||+.|..+  |+..
T Consensus        70 ~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~li~AtG~~~~~~~i~g~~  135 (319)
T 3cty_A           70 VGSE-----------LAKLFADHAANYAKIREGVEVRSIKKTQGGFDIET-ND--DTYHAKYVIITTGTTHKHLGVKGES  135 (319)
T ss_dssp             CHHH-----------HHHHHHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SS--SEEEEEEEEECCCEEECCCCCBTTT
T ss_pred             CHHH-----------HHHHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CC--CEEEeCEEEECCCCCcccCCCCChH
Confidence            1111           1222334556678888776666554  45556665 44  4789999999999987533  3332


Q ss_pred             c-CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          196 I-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       196 ~-~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      . ....+............+++++|||+|.+|+|+|..|++.|.+|+++++.+.+..  ++.    +.+.+++.||++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--~~~----l~~~l~~~gv~i~~  209 (319)
T 3cty_A          136 EYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--ENA----YVQEIKKRNIPYIM  209 (319)
T ss_dssp             TTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--CHH----HHHHHHHTTCCEEC
T ss_pred             HhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--CHH----HHHHHhcCCcEEEc
Confidence            1 1123433333333334579999999999999999999999999999998876532  333    45556688999999


Q ss_pred             CceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEec
Q 011787          275 KTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG  353 (477)
Q Consensus       275 ~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~G  353 (477)
                      +++++++..+++++ .+.+....+++..++++|.||+|+|++||.++  +++.|++++++|+|.||++++|+.|+|||+|
T Consensus       210 ~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~vya~G  287 (319)
T 3cty_A          210 NAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSF--LKDSGVKLDERGYIVVDSRQRTSVPGVYAAG  287 (319)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGG--GTTSCCCBCTTSCBCCCTTCBCSSTTEEECS
T ss_pred             CCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHH--HhhccccccCCccEeCCCCCccCCCCEEEee
Confidence            99999998765533 45554323344457999999999999999986  5677888888899999999999999999999


Q ss_pred             ccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          354 DVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       354 D~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||+.. +.+++.|+.||+.||.+|..
T Consensus       288 D~~~~~~~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          288 DVTSGNFAQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             TTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhHHHHHHHHHHHHHHHHH
Confidence            99976 57899999999999999964

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=1.2e-37  Score=297.45  Aligned_cols=290  Identities=26%  Similarity=0.380  Sum_probs=218.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+||||||||+++|..|++.|++|+|||+  .+||+|.....++...                  +..    ..+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~~~~~~------------------~~~----~~~~~   56 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVDIENYI------------------SVP----KTEGQ   56 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCEECCBT------------------TBS----SEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccccccccc------------------CcC----CCCHH
Confidence            37999999999999999999999999999986  5788876543222100                  000    01111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCC-----EEEEEecCCceEEEEecEEEEccCCCCCC--CCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS-----EVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGI  194 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~-----~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~  194 (477)
                                 .+...+...+++.+++++.+ ++..++..     .+.+.+.+|  ..+.||+||+|||+.|..  +|+.
T Consensus        57 -----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~~~~~g~  123 (310)
T 1fl2_A           57 -----------KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG--AVLKARSIIVATGAKWRNMNVPGE  123 (310)
T ss_dssp             -----------HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS--CEEEEEEEEECCCEEECCCCCTTT
T ss_pred             -----------HHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCCh
Confidence                       12233445566779999988 77777543     577777777  679999999999998743  4444


Q ss_pred             cc-CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCcEE
Q 011787          195 TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKF  272 (477)
Q Consensus       195 ~~-~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~  272 (477)
                      .. ....+++..........+++++|||+|++|+|+|..|++.+.+|+++++.+.+.  +++    .+.+.+++ .||++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~----~~~~~l~~~~gv~v  197 (310)
T 1fl2_A          124 DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQ----VLQDKLRSLKNVDI  197 (310)
T ss_dssp             TTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCH----HHHHHHHTCTTEEE
T ss_pred             hhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccH----HHHHHHhhCCCeEE
Confidence            31 123344444433333458999999999999999999999999999999988762  343    34555666 69999


Q ss_pred             EeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          273 MLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      +++++++++..+++++ .+++.+..+++..++++|.|++|+|++||.++  +++. +.++++|+|.||+++||+.|+|||
T Consensus       198 ~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~-l~~~~~g~i~vd~~~~t~~~~vya  274 (310)
T 1fl2_A          198 ILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNW--LEGA-VERNRMGEIIIDAKCETNVKGVFA  274 (310)
T ss_dssp             ESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred             ecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchH--Hhcc-ccccCCCcEEcCCCCccCCCCEEE
Confidence            9999999998766555 46665433445568999999999999999876  3443 777888999999999999999999


Q ss_pred             ecccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787          352 IGDVIPGP-MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       352 ~GD~~~~~-~~~~~A~~~g~~aa~~i~~  378 (477)
                      +|||+..+ ..+..|+.||+.||.+|..
T Consensus       275 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          275 AGDCTTVPYKQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             CSTTBSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             eecccCCcchhhhhhHhhHHHHHHHHHH
Confidence            99999875 5789999999999999964

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=5.3e-38  Score=300.41  Aligned_cols=296  Identities=20%  Similarity=0.219  Sum_probs=222.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEE-EecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTC-IEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~l-ie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .++||+|||||+||++||..|++.|++|+| +|+ +.+||.|.+..+.+..+.                  ..   ....
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~------------------~~---~~~~   60 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPG------------------VA---QVMD   60 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTT------------------CC---SCBC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCC------------------CC---CCCC
Confidence            458999999999999999999999999999 999 788998876544322110                  00   0111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEe-cC--CEEEEEecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI-SP--SEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                      .           ..+..++...+++.+++++.+++..+ +.  ..+.+....+.  ++.||+||+|||+.|..  +|+..
T Consensus        61 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~g~~  127 (315)
T 3r9u_A           61 G-----------ISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK--TELAKAVIVCTGSAPKKAGFKGED  127 (315)
T ss_dssp             H-----------HHHHHHHHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC--EEEEEEEEECCCEEECCCCCBTTT
T ss_pred             H-----------HHHHHHHHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC--EEEeCEEEEeeCCCCCCCCCCChh
Confidence            1           12233344566777899888877666 44  44664233332  89999999999998743  44443


Q ss_pred             c-CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          196 I-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       196 ~-~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      . ....+++..........+++++|+|+|.+++|+|..|.+.+.+|+++++.+.+.  .+++.   +.+.+++.||++++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~--~~~~~---~~~~~~~~gv~~~~  202 (315)
T 3r9u_A          128 EFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR--AAPST---VEKVKKNEKIELIT  202 (315)
T ss_dssp             TTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB--SCHHH---HHHHHHCTTEEEEC
T ss_pred             hcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC--CCHHH---HHHHHhcCCeEEEe
Confidence            1 224555555555555668999999999999999999999999999999988762  23333   34555788999999


Q ss_pred             CceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCc-cccc-eeecCCCCeecCCCCCCCCCCeEE
Q 011787          275 KTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL-DKIG-VETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~-~~~g-l~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      ++.+.++..+++++. +++. ..+++..++++|.|++|+|++|+...+.. +.+| +.++++|+|.||+++||+.|+|||
T Consensus       203 ~~~v~~i~~~~~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a  281 (315)
T 3r9u_A          203 SASVDEVYGDKMGVAGVKVK-LKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFA  281 (315)
T ss_dssp             SCEEEEEEEETTEEEEEEEE-CTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred             CcEEEEEEcCCCcEEEEEEE-cCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEE
Confidence            999999988775543 5554 23344458999999999999999986432 3465 888989999999999999999999


Q ss_pred             ecccCC-CCCchhHHHHHHHHHHHHHcC
Q 011787          352 IGDVIP-GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       352 ~GD~~~-~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +|||++ .|..+..|+.||+.||.+|..
T Consensus       282 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          282 AGDLRKDAPKQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             CGGGBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eecccCCchhhhhhHHhhHHHHHHHHHH
Confidence            999985 577999999999999999863

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=5.5e-39  Score=324.30  Aligned_cols=298  Identities=20%  Similarity=0.262  Sum_probs=215.2

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      .+.+.+|||||||+||+++|.+|++.+++|+|||+++..    .+.      +++          ++.....+.+.....
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~----~~~------PlL----------~~va~G~l~~~~i~~   98 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF----LFT------PLL----------PSAPVGTVDEKSIIE   98 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE----ECG------GGG----------GGTTTTSSCGGGGEE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc----ccc------cch----------hHHhhccccHHHhhh
Confidence            345679999999999999999999999999999996431    111      111          111111122211111


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEec------------------CCceEEEEecEEE
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTI------------------EGGNTVVKGKNII  181 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~------------------~g~~~~i~~d~lv  181 (477)
                      +...+                ....+.+++++.+++..+|.+..+|.+.                  .+...++.||+||
T Consensus        99 p~~~~----------------~~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LV  162 (502)
T 4g6h_A           99 PIVNF----------------ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLI  162 (502)
T ss_dssp             EHHHH----------------HTTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEE
T ss_pred             hHHHH----------------HHhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEE
Confidence            11110                1123457999999999988765544432                  1234789999999


Q ss_pred             EccCCCCC--CCCCCccCCceEecchhhhccc-------------C-------CCCeeEEEcccHHHHHHHHHHHHc---
Q 011787          182 IATGSDVK--SLPGITIDEKRIVSSTGALALN-------------E-------VPKKLVVIGAGYIGLEMGSVWARL---  236 (477)
Q Consensus       182 lAtG~~~~--~~~g~~~~~~~~~~~~~~~~~~-------------~-------~~~~v~IiG~G~~g~e~a~~l~~~---  236 (477)
                      ||||++|.  .+||+......+.+..++..++             .       ...+++|||||++|+|+|..|++.   
T Consensus       163 iAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~  242 (502)
T 4g6h_A          163 SAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQ  242 (502)
T ss_dssp             ECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHH
T ss_pred             EcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHH
Confidence            99999885  4566543333444444443221             0       124799999999999999988754   


Q ss_pred             -----------CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCC--ceEEE
Q 011787          237 -----------GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGG--EKTIL  303 (477)
Q Consensus       237 -----------g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~--~~~~i  303 (477)
                                 ..+|+++++.+++++.+++++.+.+++.|+++||+++++++|++++  ++.+.+.... .++  .++++
T Consensus       243 ~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~-~dg~~~~~~i  319 (502)
T 4g6h_A          243 DLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKH-EDGKITEETI  319 (502)
T ss_dssp             THHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEEC-TTSCEEEEEE
T ss_pred             HHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEe-cCcccceeee
Confidence                       2579999999999999999999999999999999999999999994  4455444321 112  23579


Q ss_pred             EcCEEEEeecCCCCCC--CCCccccceeecCCCCeecCCCCCC-CCCCeEEecccCC--CCCchhHHHHHHHHHHHHHc
Q 011787          304 EADVVLVSAGRTPFTA--GLGLDKIGVETDKMGRIPVNERFAT-NIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       304 ~~D~vi~a~G~~p~~~--~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~  377 (477)
                      ++|.||||+|.+||..  .+ ....+...+.+|+|.||++||+ ++|||||+|||+.  .|++++.|.+||+++|+||.
T Consensus       320 ~ad~viwa~Gv~~~~~~~~l-~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~  397 (502)
T 4g6h_A          320 PYGTLIWATGNKARPVITDL-FKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFD  397 (502)
T ss_dssp             ECSEEEECCCEECCHHHHHH-HHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccCEEEEccCCcCCHHHHhH-HHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999842  11 2344666677899999999997 8999999999984  56799999999999999995

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=2.9e-38  Score=305.03  Aligned_cols=300  Identities=21%  Similarity=0.297  Sum_probs=220.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      |+.++||+|||||+||+++|..|++.|++|+|||+++.+||+|.+.  .|++.+...             .++.    .+
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~-------------~~~~----~~   62 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL--YPEKYIYDV-------------AGFP----KV   62 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT--CTTSEECCS-------------TTCS----SE
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc--CCCceeecc-------------CCCC----CC
Confidence            3456899999999999999999999999999999998999987542  232211100             0000    11


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCC---CC--CC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSD---VK--SL  191 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~---~~--~~  191 (477)
                      ....           +...+...+.+.+++++.+ .+..++  .+.+.+.+.++  .++.||+||+|||+.   |.  .+
T Consensus        63 ~~~~-----------~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~p~~~~i  129 (335)
T 2zbw_A           63 YAKD-----------LVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQG--NAYTAKAVIIAAGVGAFEPRRIGA  129 (335)
T ss_dssp             EHHH-----------HHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCTTSEEEECCCCC
T ss_pred             CHHH-----------HHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCC--CEEEeCEEEECCCCCCCCCCCCCC
Confidence            1111           2222334445567777655 455443  23677777776  679999999999994   43  23


Q ss_pred             CCCcc-CCceEec-chhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          192 PGITI-DEKRIVS-STGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       192 ~g~~~-~~~~~~~-~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                      |+... ....+++ ..+..  ...+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+  .++..+.+.+.+++.|
T Consensus       130 ~g~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~g  205 (335)
T 2zbw_A          130 PGEREFEGRGVYYAVKSKA--EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMKAHEEGR  205 (335)
T ss_dssp             TTTTTTBTTTEESSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTS
T ss_pred             CChhhccCcEEEEecCchh--hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHhccccCC
Confidence            44321 1122322 12211  12479999999999999999999999999999999887654  3567788888899999


Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      |++++++.+.+++.+++...+.+....+++..++++|.|++|+|++|+.++  +++.++..+ +|++.||+++||+.|+|
T Consensus       206 v~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t~~~~v  282 (335)
T 2zbw_A          206 LEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGP--LANWGLALE-KNKIKVDTTMATSIPGV  282 (335)
T ss_dssp             SEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGG--GGGSCCCEE-TTEEECCTTCBCSSTTE
T ss_pred             eEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchH--hhhcceecc-CCeeeeCCCCCCCCCCE
Confidence            999999999999875443346655332344578999999999999999875  677788877 68999999999999999


Q ss_pred             EEecccCC---CCCchhHHHHHHHHHHHHHcC
Q 011787          350 YAIGDVIP---GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       350 ya~GD~~~---~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||+|||+.   .+.++..|..||+.||+||.+
T Consensus       283 ya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          283 YACGDIVTYPGKLPLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             EECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence            99999994   457899999999999999974

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=3.2e-38  Score=300.35  Aligned_cols=284  Identities=15%  Similarity=0.194  Sum_probs=202.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee-ccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL-NVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~-~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      .|++|||+||||||||++||.+|++.|++|+|||++ ..||.+. +...++...                         .
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~~~~~~~~~-------------------------~   56 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQNSHGFITRD-------------------------G   56 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSCBCCSTTCT-------------------------T
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeeecCCccCCC-------------------------C
Confidence            567799999999999999999999999999999995 5566432 111111100                         1


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEe---cCCEEEEEecCCceEEEEecEEEEccCCCCCC--CCC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI---SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPG  193 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g  193 (477)
                      ....++...          ...+..+...+.+..+.+..+   +...+.+.+.+|  .++.||+||||||++|+.  +|+
T Consensus        57 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~a~~liiATGs~p~~p~i~G  124 (304)
T 4fk1_A           57 IKPEEFKEI----------GLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDH--TKYLAERVLLATGMQEEFPSIPN  124 (304)
T ss_dssp             BCHHHHHHH----------HHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTC--CEEEEEEEEECCCCEEECCSCTT
T ss_pred             CCHHHHHHH----------HHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCC--CEEEeCEEEEccCCccccccccC
Confidence            111111111          011222334566766655443   455677888887  789999999999999854  444


Q ss_pred             Cc-cCCceEecchhhhcccCCCCeeEEEcccH-HHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          194 IT-IDEKRIVSSTGALALNEVPKKLVVIGAGY-IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~-~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      .. .....+++..........+++++|||||. .++|+|..+.+.+.+|+++.+.+.+.        +.+.+.|+++|+.
T Consensus       125 ~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--------~~~~~~l~~~g~~  196 (304)
T 4fk1_A          125 VREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS--------QTIMDELSNKNIP  196 (304)
T ss_dssp             HHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--------HHHHHHHHTTTCC
T ss_pred             ccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch--------hhhhhhhhcccee
Confidence            33 22345666555555555677788887775 56889999999999999998766432        3456678889999


Q ss_pred             EEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeE
Q 011787          272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY  350 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vy  350 (477)
                      ++.+ .+..+..+++.+. +++.     +++++++|.++++.|.+|+...  ++++|++++++|+|.||+++|||+||||
T Consensus       197 ~~~~-~v~~~~~~~~~~~~v~~~-----~g~~i~~~~~vi~~g~~~~~~~--~~~~g~~~~~~G~I~vd~~~~Ts~p~Iy  268 (304)
T 4fk1_A          197 VITE-SIRTLQGEGGYLKKVEFH-----SGLRIERAGGFIVPTFFRPNQF--IEQLGCELQSNGTFVIDDFGRTSEKNIY  268 (304)
T ss_dssp             EECS-CEEEEESGGGCCCEEEET-----TSCEECCCEEEECCEEECSSCH--HHHTTCCCCTTSSSCSSTTCBCSSTTEE
T ss_pred             Eeee-eEEEeecCCCeeeeeecc-----ccceeeecceeeeeccccCChh--hhhcCeEECCCCCEEECcCCccCCCCEE
Confidence            9876 4777776655443 5554     6678999988888877776664  7888999999999999999999999999


Q ss_pred             EecccCC-CCCchhHHHHHHHHHHHHHc
Q 011787          351 AIGDVIP-GPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       351 a~GD~~~-~~~~~~~A~~~g~~aa~~i~  377 (477)
                      |+|||++ .+.++..|+.||+.||..|.
T Consensus       269 A~GDv~~~~~~~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          269 LAGETTTQGPSSLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             ECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence            9999995 45678899999999998874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=7.7e-38  Score=302.37  Aligned_cols=296  Identities=24%  Similarity=0.238  Sum_probs=219.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC----CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR----GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS  115 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~----~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~  115 (477)
                      +..++||+|||||+||+++|..|++.|++|+|||+.    ..+||.|..........                  ++.. 
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~------------------~~~~-   79 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFP------------------GFPD-   79 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCST------------------TCTT-
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccC------------------CCcc-
Confidence            345689999999999999999999999999999994    47888765433111000                  0000 


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC--CEEEEEec---CCceEEEEecEEEEccCCCCCC
Q 011787          116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTI---EGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~---~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                        ....           ..+...+...+.+.+++++.+++..++.  ..+.+.+.   ++  ..+.||+||+|||+.|..
T Consensus        80 --~~~~-----------~~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~--~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A           80 --GLTG-----------SELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDA--EPVTTDAIILATGASAKR  144 (338)
T ss_dssp             --CEEH-----------HHHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSS--CCEEEEEEEECCCEEECC
T ss_pred             --cCCH-----------HHHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCC--cEEEeCEEEECcCCCcCC
Confidence              0011           1223334455667799998888766654  34555542   34  678999999999998753


Q ss_pred             --CCCCc-cCCceEecchhhhcc--cCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHH
Q 011787          191 --LPGIT-IDEKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL  265 (477)
Q Consensus       191 --~~g~~-~~~~~~~~~~~~~~~--~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l  265 (477)
                        +|+.. .....+.+.......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+      ...+.+.+
T Consensus       145 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~~~~~~~l  218 (338)
T 3itj_A          145 MHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------STIMQKRA  218 (338)
T ss_dssp             CCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------CHHHHHHH
T ss_pred             CCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------CHHHHHHH
Confidence              44432 112344444433333  34589999999999999999999999999999999887754      23445555


Q ss_pred             Hhc-CcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeec-CCCC
Q 011787          266 EKQ-KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV-NERF  342 (477)
Q Consensus       266 ~~~-gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~v-d~~l  342 (477)
                      .+. ||++++++.+.+++.+++++. +++.+..++++.++++|.||+|+|++|+..+  ++. ++.++++|++.+ |+++
T Consensus       219 ~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--~~~-~l~~~~~G~i~v~~~~~  295 (338)
T 3itj_A          219 EKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKI--VAG-QVDTDEAGYIKTVPGSS  295 (338)
T ss_dssp             HHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGG--GBT-TBCBCTTSCBCCCTTSS
T ss_pred             HhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhH--hhC-ceEecCCCcEEEcCccc
Confidence            554 999999999999988776554 7776545556788999999999999999986  344 898998999985 8889


Q ss_pred             CCCCCCeEEecccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          343 ATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       343 ~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +|+.|+|||+|||+.. +..+..|+.||+.||.+|..
T Consensus       296 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          296 LTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             BCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHH
Confidence            9999999999999974 67889999999999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=2.3e-37  Score=296.79  Aligned_cols=295  Identities=20%  Similarity=0.261  Sum_probs=220.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+|||||+||+++|..|++.|++|+|+|+ ..+||.|.........                .  ++.   ..+..
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~~~----------------~--~~~---~~~~~   61 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVENW----------------P--GDP---NDLTG   61 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBCCCS----------------T--TCC---SSCBH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchhhhhC----------------C--CCC---CCCCH
Confidence            358999999999999999999999999999997 5788876543221100                0  000   00111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCCCC--CCCc-c
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGIT-I  196 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~--~g~~-~  196 (477)
                      ..           +...+...+.+.+++++.+++..++.  +.+.+ +.++  ..+.||+||+|||+.|..+  |+.. .
T Consensus        62 ~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v-~~~~--~~~~~~~lv~AtG~~~~~~~~~g~~~~  127 (320)
T 1trb_A           62 PL-----------LMERMHEHATKFETEIIFDHINKVDLQNRPFRL-NGDN--GEYTCDALIIATGASARYLGLPSEEAF  127 (320)
T ss_dssp             HH-----------HHHHHHHHHHHTTCEEECCCEEEEECSSSSEEE-EESS--CEEEEEEEEECCCEEECCCCCHHHHHT
T ss_pred             HH-----------HHHHHHHHHHHCCCEEEEeeeeEEEecCCEEEE-EeCC--CEEEcCEEEECCCCCcCCCCCCChHHh
Confidence            11           22223345566789988888777654  34555 4555  6799999999999987543  3322 1


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      ....+++..........+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.  .++.+.+.+.+.+++.||++++++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~  205 (320)
T 1trb_A          128 KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNR  205 (320)
T ss_dssp             BTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSC
T ss_pred             CCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCc
Confidence            123344444443344568999999999999999999999999999999988764  367788888889999999999999


Q ss_pred             eEEEEEEcCCeEE-EEEeecCC-CceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCC-----CCCCCCe
Q 011787          277 KVVGVDLSGDGVK-LTLEPAAG-GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-----ATNIPGV  349 (477)
Q Consensus       277 ~v~~i~~~~~~~~-v~~~~~~~-~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l-----~t~~~~v  349 (477)
                      ++++++.+++++. +++.+..+ ++..++++|.|++|+|++|+..++  + .++.++ +|++.||+++     +|+.|+|
T Consensus       206 ~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~v  281 (320)
T 1trb_A          206 TLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGV  281 (320)
T ss_dssp             EEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSSCTTBCSSTTE
T ss_pred             eeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCcccccccCCCCCE
Confidence            9999987765543 66553222 445789999999999999998763  3 457777 8999999997     7999999


Q ss_pred             EEecccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          350 YAIGDVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       350 ya~GD~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||+|||+.. +..+..|..+|+.||.+|..
T Consensus       282 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          282 FAAGDVMDHIYRQAITSAGTGCMAALDAER  311 (320)
T ss_dssp             EECGGGGCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcccccCCcchhhhhhhccHHHHHHHHHH
Confidence            999999986 46889999999999999963

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.3e-37  Score=296.13  Aligned_cols=296  Identities=23%  Similarity=0.324  Sum_probs=214.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ++.++||+|||||+||+++|..|++.|++|+|||+ ..+||.|.........                .  ++.   ..+
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~~~----------------~--~~~---~~~   68 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEG-TSFGGALMTTTDVENY----------------P--GFR---NGI   68 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECC-SSCSCGGGSCSCBCCS----------------T--TCT---TCB
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeccchhhhc----------------C--CCC---CCC
Confidence            44568999999999999999999999999999998 4788876543221100                0  000   001


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC-CEEEE-EecCCceEEEEecEEEEccCCCCCC--CCCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP-SEVSV-DTIEGGNTVVKGKNIIIATGSDVKS--LPGIT  195 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~v-~~~~g~~~~i~~d~lvlAtG~~~~~--~~g~~  195 (477)
                      ....           +...+...+.+.+++++.+++..++. +.+.+ .+.++  .++.||+||+|||+.|..  +|+..
T Consensus        69 ~~~~-----------~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g--~~~~~d~lviAtG~~~~~~~i~g~~  135 (335)
T 2a87_A           69 TGPE-----------LMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADG--QTHRARAVILAMGAAARYLQVPGEQ  135 (335)
T ss_dssp             CHHH-----------HHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTS--CEEEEEEEEECCCEEECCCCCTHHH
T ss_pred             CHHH-----------HHHHHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCC--CEEEeCEEEECCCCCccCCCCCchH
Confidence            1111           12223344556788888887666654 33455 55666  679999999999998753  34432


Q ss_pred             -cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                       .....+++..........+++++|||+|.+|+|+|..|++.|.+|+++++.+.+..  .+.+.   .+.+++.||++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--~~~~~---~~~~~~~gV~v~~  210 (335)
T 2a87_A          136 ELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--SKIML---DRARNNDKIRFLT  210 (335)
T ss_dssp             HTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--CTTHH---HHHHHCTTEEEEC
T ss_pred             hccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--cHHHH---HHHhccCCcEEEe
Confidence             11233444444333345689999999999999999999999999999999887642  22221   2445678999999


Q ss_pred             CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCC-CCCCCCCeEEec
Q 011787          275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATNIPGVYAIG  353 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l~t~~~~vya~G  353 (477)
                      ++++++++.+++...+.+.+..+++..++++|.|++|+|++|+++++  + .++.++++|+|.||++ ++|+.|+|||+|
T Consensus       211 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~~~~iya~G  287 (335)
T 2a87_A          211 NHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGRTTSTSLPGVFAAG  287 (335)
T ss_dssp             SEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTTSSBCSSTTEEECG
T ss_pred             CceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHh--h-cccccCCCccEEeCCCCCccCCCCEEEee
Confidence            99999998765433455543333445789999999999999999863  3 4688888899999996 689999999999


Q ss_pred             ccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          354 DVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       354 D~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||++. +..+..|..+|+.||.+|..
T Consensus       288 D~~~~~~~~~~~A~~~g~~aA~~i~~  313 (335)
T 2a87_A          288 DLVDRTYRQAVTAAGSGCAAAIDAER  313 (335)
T ss_dssp             GGTCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCccHHHHHHHHHhHHHHHHHHHH
Confidence            99976 56889999999999999863

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=4.1e-37  Score=291.72  Aligned_cols=279  Identities=15%  Similarity=0.145  Sum_probs=209.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||+++|..|++.|++|+|+|++...++........|.                         ....+..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------------~~~~~~~   56 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLG-------------------------QDGKAPG   56 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTT-------------------------CTTCCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcC-------------------------CCCCCHH
Confidence            379999999999999999999999999999995433221100000000                         0011222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCcc-
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI-  196 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~-  196 (477)
                      .           +...+.+.+.+. +++++.+++..++.  +.+.+.+.++  .++.||+||+|||+.|.  .+|+... 
T Consensus        57 ~-----------~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vviAtG~~~~~~~~~g~~~~  123 (297)
T 3fbs_A           57 E-----------IIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGG--RRETAGRLILAMGVTDELPEIAGLRER  123 (297)
T ss_dssp             H-----------HHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCCEEECCCCBTTGGG
T ss_pred             H-----------HHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECCCCCCCCCCCCCchhh
Confidence            1           222333444554 78888887777653  4678888777  68999999999999874  3455432 


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      ....+++..........+++++|||+|.+|+|+|..|.+.| +|+++.+.+.   .++    +.+.+.+++.||+++. +
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~~~----~~~~~~l~~~gv~i~~-~  194 (297)
T 3fbs_A          124 WGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---EPD----ADQHALLAARGVRVET-T  194 (297)
T ss_dssp             BTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---CCC----HHHHHHHHHTTCEEEC-S
T ss_pred             cCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---CCC----HHHHHHHHHCCcEEEc-c
Confidence            22345555443444445899999999999999999999999 9999988765   223    3456778899999995 8


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeec--CCC-CeecCCCCCCCCCCeEEec
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD--KMG-RIPVNERFATNIPGVYAIG  353 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~--~~g-~i~vd~~l~t~~~~vya~G  353 (477)
                      ++++++.++   .+.+.     +++++++|.|++|+|++|+.++  +++.+++.+  ++| ++.||++++|+.|+|||+|
T Consensus       195 ~v~~i~~~~---~v~~~-----~g~~~~~D~vi~a~G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~G  264 (297)
T 3fbs_A          195 RIREIAGHA---DVVLA-----DGRSIALAGLFTQPKLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACG  264 (297)
T ss_dssp             CEEEEETTE---EEEET-----TSCEEEESEEEECCEEECCCSC--HHHHTCCEEEETTEEEECCCTTCBCSSTTEEECS
T ss_pred             eeeeeecCC---eEEeC-----CCCEEEEEEEEEccCcccCchh--HHhcCCccccCCCCceEEeCCCCccCCCCEEEEe
Confidence            999996433   45544     5678999999999999999875  677788776  457 8999999999999999999


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          354 DVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       354 D~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||++.|.+++.|..||+.||.+|..
T Consensus       265 D~~~~~~~~~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          265 DVARPAGSVALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             GGGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCchHHHHHHHHhHHHHHHHHHH
Confidence            9999899999999999999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=1.5e-37  Score=299.67  Aligned_cols=292  Identities=20%  Similarity=0.249  Sum_probs=219.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||+||++||..|++.|++|+|||+++.+||.|.+  +.|...+...             .++.    .... 
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~--~~~~~~~~~~-------------~~~~----~~~~-   66 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA--LYPEKYIYDV-------------AGFP----KIRA-   66 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH--HCTTSEECCS-------------TTCS----SEEH-
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh--cCCCceEecc-------------CCCC----CCCH-
Confidence            479999999999999999999999999999999999998742  2222111000             0000    0111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEE-eEEEEecC--C-EEEEEecCCceEEEEecEEEEccCC---CCC--CCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISP--S-EVSVDTIEGGNTVVKGKNIIIATGS---DVK--SLPG  193 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~--~-~~~v~~~~g~~~~i~~d~lvlAtG~---~~~--~~~g  193 (477)
                                ..+...+...+++.+++++. ..+..++.  + .+.+.+.++   ++.||+||+|||+   .|.  .+|+
T Consensus        67 ----------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~~~p~~~~~~g  133 (332)
T 3lzw_A           67 ----------QELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEE---THYSKTVIITAGNGAFKPRKLELEN  133 (332)
T ss_dssp             ----------HHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSE---EEEEEEEEECCTTSCCEECCCCCTT
T ss_pred             ----------HHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCC---EEEeCEEEECCCCCcCCCCCCCCCC
Confidence                      12333444556667888875 45555543  2 567777776   3999999999999   564  3455


Q ss_pred             Ccc-CCceEecchhhhcccC-CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          194 ITI-DEKRIVSSTGALALNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       194 ~~~-~~~~~~~~~~~~~~~~-~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      ... ....+++  ....... .+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.+ .+.     ..+.+++.||+
T Consensus       134 ~~~~~g~~~~~--~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~-----~~~~l~~~gv~  205 (332)
T 3lzw_A          134 AEQYEGKNLHY--FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEH-----SVENLHASKVN  205 (332)
T ss_dssp             GGGGBTTTEES--SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHH-----HHHHHHHSSCE
T ss_pred             hhhccCceEEE--ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHH-----HHHHHhcCCeE
Confidence            432 2223333  2222222 379999999999999999999999999999999887643 222     23447889999


Q ss_pred             EEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEE
Q 011787          272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya  351 (477)
                      +++++++.+++.+++...+++.+..++++.++++|.|++|+|++|+.++  ++..++.. ++|+|.||+++||+.|+|||
T Consensus       206 ~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~~~~~-~~g~i~vd~~~~t~~~~vya  282 (332)
T 3lzw_A          206 VLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTMETNIEGFFA  282 (332)
T ss_dssp             EETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGG--GGGSSCCE-ETTEEECCTTSBCSSTTEEE
T ss_pred             EEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchH--HhhcCccc-cCCeEEeCCCCceecCCEEE
Confidence            9999999999877666667777655666788999999999999999886  67888888 67899999999999999999


Q ss_pred             ecccC---CCCCchhHHHHHHHHHHHHHcC
Q 011787          352 IGDVI---PGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       352 ~GD~~---~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +|||+   +.+.++..|..||+.||.+|+.
T Consensus       283 ~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  312 (332)
T 3lzw_A          283 AGDICTYEGKVNLIASGFGEAPTAVNNAKA  312 (332)
T ss_dssp             CGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence            99999   5678999999999999999974

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=7.4e-37  Score=298.18  Aligned_cols=300  Identities=21%  Similarity=0.295  Sum_probs=218.5

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      |+.++||+|||||+||+++|..|++.|++|+|||+.+.+||.|.+.  .|++.+...             .++.    .+
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~-------------~~~~----~~   71 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL--YPEKHIYDV-------------AGFP----EV   71 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT--CTTSEECCS-------------TTCS----SE
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc--CCCcccccC-------------CCCC----CC
Confidence            4456899999999999999999999999999999998999987532  222111000             0000    01


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC---CEEEEEecCCceEEEEecEEEEccCCC---CCC--
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSD---VKS--  190 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~---~~~--  190 (477)
                      +...           +...+...+.+.+++++.+ .+..++.   ..+.|.+.+|  ..+.||+||+|||+.   |..  
T Consensus        72 ~~~~-----------~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~~li~AtG~~~~~~~~~~  138 (360)
T 3ab1_A           72 PAID-----------LVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTG--NVYRSRAVLIAAGLGAFEPRKLP  138 (360)
T ss_dssp             EHHH-----------HHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTS--CEEEEEEEEECCTTCSCCBCCCG
T ss_pred             CHHH-----------HHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCC--cEEEeeEEEEccCCCcCCCCCCC
Confidence            1111           2222334455667877655 4555442   2567777777  679999999999994   322  


Q ss_pred             CCC-Cc-cCCceEec-chhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 011787          191 LPG-IT-IDEKRIVS-STGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK  267 (477)
Q Consensus       191 ~~g-~~-~~~~~~~~-~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~  267 (477)
                      +|+ .. .....++. ..+...  ..+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+.  +...+.+.+.+++
T Consensus       139 i~g~~~~~~~~~v~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~  214 (360)
T 3ab1_A          139 QLGNIDHLTGSSVYYAVKSVED--FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHEVERARAN  214 (360)
T ss_dssp             GGCCCTTTBTTTEESSCSCGGG--GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHSSHHHHHH
T ss_pred             CCCchhhCcCceEEEecCCHHH--cCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhc
Confidence            334 22 11122322 122211  24799999999999999999999999999999998876542  3566777888889


Q ss_pred             cCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCC
Q 011787          268 QKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI  346 (477)
Q Consensus       268 ~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~  346 (477)
                      .||++++++++++++.+++++ .+.+. ..+++...+++|.||+|+|++|+.++  ++..++.++ +|+|.||+++||++
T Consensus       215 ~gv~i~~~~~v~~i~~~~~~v~~v~~~-~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t~~  290 (360)
T 3ab1_A          215 GTIDVYLETEVASIEESNGVLTRVHLR-SSDGSKWTVEADRLLILIGFKSNLGP--LARWDLELY-ENALVVDSHMKTSV  290 (360)
T ss_dssp             TSEEEESSEEEEEEEEETTEEEEEEEE-ETTCCEEEEECSEEEECCCBCCSCGG--GGGSSCCEE-TTEEECCTTSBCSS
T ss_pred             CceEEEcCcCHHHhccCCCceEEEEEE-ecCCCeEEEeCCEEEECCCCCCCHHH--HHhhccccc-cCeeeecCCCcCCC
Confidence            999999999999998876654 35543 12334478999999999999999876  667788877 68999999999999


Q ss_pred             CCeEEecccCC---CCCchhHHHHHHHHHHHHHcCC
Q 011787          347 PGVYAIGDVIP---GPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       347 ~~vya~GD~~~---~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      |+|||+|||+.   .+.++..|..||+.||.+|.+.
T Consensus       291 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~  326 (360)
T 3ab1_A          291 DGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSY  326 (360)
T ss_dssp             TTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEecCccCCCCccceeehhHHHHHHHHHHHHhh
Confidence            99999999995   4678999999999999999753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=2e-36  Score=292.00  Aligned_cols=294  Identities=23%  Similarity=0.252  Sum_probs=213.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec----CCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK----RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV  117 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~----~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~  117 (477)
                      .++||+|||||++|+++|..|++.|++|+|+|+    ...+||.+........                +.  ++.   .
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~----------------~~--~~~---~   65 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVEN----------------FP--GFP---E   65 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECC----------------ST--TCT---T
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecccccc----------------CC--CCc---c
Confidence            458999999999999999999999999999998    5567776543321100                00  000   0


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCCC--CCC
Q 011787          118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPG  193 (477)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~--~~g  193 (477)
                      .+...           .+...+...+.+.+++++.+++..++.  +.+.|.+ ++  ..+.||+||+|||+.|..  +|+
T Consensus        66 ~~~~~-----------~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~vv~A~G~~~~~~~~~g  131 (333)
T 1vdc_A           66 GILGV-----------ELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DS--KAILADAVILAIGAVAKRLSFVG  131 (333)
T ss_dssp             CEEHH-----------HHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SS--EEEEEEEEEECCCEEECCCCCBT
T ss_pred             CCCHH-----------HHHHHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CC--cEEEcCEEEECCCCCcCCCCCCC
Confidence            01111           122233345566789988877666553  3456666 55  689999999999998753  344


Q ss_pred             CccC-----CceEecchhhhccc--CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHH
Q 011787          194 ITID-----EKRIVSSTGALALN--EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE  266 (477)
Q Consensus       194 ~~~~-----~~~~~~~~~~~~~~--~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~  266 (477)
                      ....     ...+++........  ..+++++|||+|.+|+|+|..|++.|.+|+++++.+.+..  .+.+   ..+.++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~~~~~  206 (333)
T 1vdc_A          132 SGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALS  206 (333)
T ss_dssp             CSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHT
T ss_pred             ccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HHHHHh
Confidence            3320     12333333333332  4689999999999999999999999999999999886532  2222   234457


Q ss_pred             hcCcEEEeCceEEEEEEcCC--eE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCC-C
Q 011787          267 KQKMKFMLKTKVVGVDLSGD--GV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-F  342 (477)
Q Consensus       267 ~~gv~~~~~~~v~~i~~~~~--~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l  342 (477)
                      +.||++++++++.++..+++  ++ .+.+.+..+++..++++|.|++|+|++|+..++  + .++.++++|+|.||++ +
T Consensus       207 ~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~  283 (333)
T 1vdc_A          207 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYVVTKPGTT  283 (333)
T ss_dssp             CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCBCCCTTSC
T ss_pred             CCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHh--h-ccccccCCCCEEechhhc
Confidence            78999999999999987664  44 366654334555789999999999999999863  3 4688888899999997 5


Q ss_pred             CCCCCCeEEecccCCC-CCchhHHHHHHHHHHHHHcC
Q 011787          343 ATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       343 ~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +|+.|+|||+|||+.. +..+..|..||+.||.+|..
T Consensus       284 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          284 QTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             BCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHH
Confidence            8999999999999976 46899999999999999963

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=8.9e-36  Score=303.19  Aligned_cols=292  Identities=25%  Similarity=0.383  Sum_probs=220.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...+||+||||||||++||.+|++.|++|+|+|+  .+||+|.....++...                  +..    ...
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~~~~~------------------~~~----~~~  265 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDIENYI------------------SVP----KTE  265 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCBCCBT------------------TBS----SBC
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccccccccC------------------CCC----CCC
Confidence            3468999999999999999999999999999986  5788876543322100                  000    011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCC-----EEEEEecCCceEEEEecEEEEccCCCCC--CCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS-----EVSVDTIEGGNTVVKGKNIIIATGSDVK--SLP  192 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~-----~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~  192 (477)
                      ..           .+...+...+++.+++++.+ .+..++..     .+.|.+.+|  ..+.||+||+|||++|+  .+|
T Consensus       266 ~~-----------~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g--~~~~~d~vVlAtG~~~~~~~ip  332 (521)
T 1hyu_A          266 GQ-----------KLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG--AVLKARSIIIATGAKWRNMNVP  332 (521)
T ss_dssp             HH-----------HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS--CEEEEEEEEECCCEEECCCCCT
T ss_pred             HH-----------HHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC--CEEEcCEEEECCCCCcCCCCCC
Confidence            11           12233445566789999988 67777532     577877777  67999999999999875  345


Q ss_pred             CCc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHh-cCc
Q 011787          193 GIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKM  270 (477)
Q Consensus       193 g~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gv  270 (477)
                      |.. .....++...........+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+  +    ..+.+.+++ .||
T Consensus       333 G~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV  406 (521)
T 1hyu_A          333 GEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKVRSLKNV  406 (521)
T ss_dssp             TTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHHTTCTTE
T ss_pred             ChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHHhcCCCc
Confidence            543 12233443333222233589999999999999999999999999999999887653  3    345566776 699


Q ss_pred             EEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCe
Q 011787          271 KFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV  349 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~v  349 (477)
                      ++++++.++++..+++++ .+.+.+..+++..++++|.|++++|++||+++  ++. .+.++++|+|.||++++|++|+|
T Consensus       407 ~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~--l~~-~l~~~~~G~I~Vd~~~~ts~p~V  483 (521)
T 1hyu_A          407 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHW--LEG-ALERNRMGEIIIDAKCETSVKGV  483 (521)
T ss_dssp             EEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGG--GTT-TSCBCTTSCBCCCTTCBCSSTTE
T ss_pred             EEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchH--Hhh-hhccCCCCcEEeCCCCCCCCCCE
Confidence            999999999998766555 46665444455568999999999999999976  344 37788889999999999999999


Q ss_pred             EEecccCCCC-CchhHHHHHHHHHHHHHcC
Q 011787          350 YAIGDVIPGP-MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       350 ya~GD~~~~~-~~~~~A~~~g~~aa~~i~~  378 (477)
                      ||+|||+..+ ..+..|+.||+.||.+|..
T Consensus       484 fA~GD~~~~~~~~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          484 FAAGDCTTVPYKQIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             EECSTTBCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccCCCcceeeehHHhHHHHHHHHHH
Confidence            9999999865 5789999999999999863

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=2.4e-36  Score=329.05  Aligned_cols=309  Identities=19%  Similarity=0.196  Sum_probs=219.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ..+||+||||||||++||.+|++.|+ +|+|||+.+.+||++.  .++|...+                          +
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~--~~ip~~~~--------------------------~  237 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST--SEIPQFRL--------------------------P  237 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH--HTSCTTTS--------------------------C
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc--ccCCcccC--------------------------C
Confidence            36899999999999999999999999 7999999889999642  12232110                          0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CCCCC---CCcc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKSLP---GITI  196 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~~~~---g~~~  196 (477)
                      . .           ...+...++++.+++++.++....  +  .+.+.++  ..+.||+||||||+. |+.+|   |++ 
T Consensus       238 ~-~-----------~~~~~~~~~~~~gv~~~~~~~v~~--~--~v~~~~~--~~~~~d~vvlAtGa~~p~~l~~~~G~~-  298 (1025)
T 1gte_A          238 Y-D-----------VVNFEIELMKDLGVKIICGKSLSE--N--EITLNTL--KEEGYKAAFIGIGLPEPKTDDIFQGLT-  298 (1025)
T ss_dssp             H-H-----------HHHHHHHHHHTTTCEEEESCCBST--T--SBCHHHH--HHTTCCEEEECCCCCEECCCGGGTTCC-
T ss_pred             H-H-----------HHHHHHHHHHHCCcEEEcccEecc--c--eEEhhhc--CccCCCEEEEecCCCCCCCCCCCCCCC-
Confidence            0 0           111123456678999988764321  1  1222333  346799999999994 65443   332 


Q ss_pred             CCceEecchhhhc----------------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCC-CcCCCCCHHHH
Q 011787          197 DEKRIVSSTGALA----------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA-DIVPSMDGEIR  258 (477)
Q Consensus       197 ~~~~~~~~~~~~~----------------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~-~~~~~~~~~~~  258 (477)
                      ....+++..+++.                +...+++|+|||||.+|+|+|..+.+.|. +||++++.+ ..++.+++++ 
T Consensus       299 ~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~-  377 (1025)
T 1gte_A          299 QDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-  377 (1025)
T ss_dssp             TTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-
T ss_pred             CCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-
Confidence            1245777665542                12347799999999999999999999996 899999988 4567666554 


Q ss_pred             HHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeec---CC-------CceEEEEcCEEEEeecCCCCCCCCCccc-c
Q 011787          259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA---AG-------GEKTILEADVVLVSAGRTPFTAGLGLDK-I  326 (477)
Q Consensus       259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~---~~-------~~~~~i~~D~vi~a~G~~p~~~~l~~~~-~  326 (477)
                          +.+++.||++++++.++++..+++++. +++...   .+       ++..++++|.||+|+|++|+...+ ++. .
T Consensus       378 ----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l-~~~~~  452 (1025)
T 1gte_A          378 ----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKV-KEALS  452 (1025)
T ss_dssp             ----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHH-HHHTT
T ss_pred             ----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhh-hhccc
Confidence                356778999999999999987666543 443210   11       223579999999999998754333 333 5


Q ss_pred             ceeecCCCCeecCC-CCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC---CCCCCCCCceEEEcCCCeeeec
Q 011787          327 GVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH---GHVDYDKVPGVVYTHPEVASVG  402 (477)
Q Consensus       327 gl~~~~~g~i~vd~-~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~~~~~~G  402 (477)
                      |++++++|+|.||+ ++||+.|+|||+|||++.+.++..|+.||+.||.+|.+..   ...++...|.+.|+.|+++.++
T Consensus       453 gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~  532 (1025)
T 1gte_A          453 PIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVD  532 (1025)
T ss_dssp             TSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCC
T ss_pred             CceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccccccccc
Confidence            88888889999997 8999999999999999999999999999999999997421   1123444455556665444444


Q ss_pred             C
Q 011787          403 K  403 (477)
Q Consensus       403 ~  403 (477)
                      +
T Consensus       533 l  533 (1025)
T 1gte_A          533 I  533 (1025)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=3.5e-36  Score=299.94  Aligned_cols=282  Identities=24%  Similarity=0.325  Sum_probs=203.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ...+||+||||||||++||..|++.|++|+|||+.+.+||.+.+ + +|...                          .+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~-g-ip~~~--------------------------~~  171 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVY-G-IPGFK--------------------------LE  171 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHH-T-SCTTT--------------------------SC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeee-c-CCCcc--------------------------CC
Confidence            35689999999999999999999999999999998889986422 1 22110                          00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-C--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~--~~~g~~~~  197 (477)
                       ..           +.....+++++.+++++.++..  ..   .+...++   .+.||+||||||+.+ +  .+||..  
T Consensus       172 -~~-----------~~~~~~~~l~~~gv~~~~~~~v--~~---~v~~~~~---~~~~d~vvlAtG~~~~~~~~ipG~~--  229 (456)
T 2vdc_G          172 -KS-----------VVERRVKLLADAGVIYHPNFEV--GR---DASLPEL---RRKHVAVLVATGVYKARDIKAPGSG--  229 (456)
T ss_dssp             -HH-----------HHHHHHHHHHHTTCEEETTCCB--TT---TBCHHHH---HSSCSEEEECCCCCEECCTTCSCCT--
T ss_pred             -HH-----------HHHHHHHHHHHCCcEEEeCCEe--cc---EEEhhHh---HhhCCEEEEecCCCCCCCCCCCCCc--
Confidence             00           1112234556678888766432  11   1222222   256999999999974 3  344443  


Q ss_pred             CceEecchhhhc------------------ccCCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc-CCCCCHHH
Q 011787          198 EKRIVSSTGALA------------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEI  257 (477)
Q Consensus       198 ~~~~~~~~~~~~------------------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~-~~~~~~~~  257 (477)
                      ...+++..+++.                  ....+++|+|||+|.+|+|+|..+.+.|. +|++++|++.. +|..+.+ 
T Consensus       230 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e-  308 (456)
T 2vdc_G          230 LGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQRE-  308 (456)
T ss_dssp             TTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHH-
T ss_pred             CCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHH-
Confidence            334554433211                  12458999999999999999999999998 59999998876 6655443 


Q ss_pred             HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEee------cC---------CCceEEEEcCEEEEeecCCCCCCCC
Q 011787          258 RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEP------AA---------GGEKTILEADVVLVSAGRTPFTAGL  321 (477)
Q Consensus       258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~------~~---------~~~~~~i~~D~vi~a~G~~p~~~~l  321 (477)
                          .+.+++.||++++++.++++..+ +.+. +++..      ..         +++..++++|.||+|+|+.|+...+
T Consensus       309 ----~~~~~~~Gv~~~~~~~~~~i~~~-g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~  383 (456)
T 2vdc_G          309 ----VAHAEEEGVEFIWQAAPEGFTGD-TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPN  383 (456)
T ss_dssp             ----HHHHHHTTCEEECCSSSCCEEEE-EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHH
T ss_pred             ----HHHHHHCCCEEEeCCCceEEeCC-CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchh
Confidence                24567789999999998888753 3321 22210      00         2334689999999999999987521


Q ss_pred             CccccceeecCCCCeecCCC-CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          322 GLDKIGVETDKMGRIPVNER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       322 ~~~~~gl~~~~~g~i~vd~~-l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      .++..+++++++|+|.||++ ++|+.|+|||+|||+.++.++..|+.||+.||.+|..
T Consensus       384 ~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          384 AFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             HHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence            16778899999999999998 9999999999999999999999999999999999974

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=1.3e-34  Score=283.25  Aligned_cols=311  Identities=14%  Similarity=0.198  Sum_probs=210.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc-cccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV-KFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~-~~~~~~~~  120 (477)
                      ++||+|||||+||+++|.+|++.|. +|+|||+++ +||.|.++.....  ++....       ....+++ .......+
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~--~~~~~~-------~~~~~g~~~~~~~~~~   73 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTR--TITPSF-------TSNGFGMPDMNAISMD   73 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCB--CSSCCC-------CCGGGTCCCTTCSSTT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccccc--ccCcch-------hcccCCchhhhhcccc
Confidence            5899999999999999999999999 999999987 9998866432100  000000       0001111 00000011


Q ss_pred             hHHHHHHHHH--HHHHHHHHHHHHhhhCCeEEEEeE-EEEecCC--EEEEEecCCceEEEEecEEEEccCCCCC-CCCCC
Q 011787          121 LPAMMAQKDK--AVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK-SLPGI  194 (477)
Q Consensus       121 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~v~~~~g~~~~i~~d~lvlAtG~~~~-~~~g~  194 (477)
                      +.........  ....+...+....++.+++++.++ +..++..  .+.|.+.++   ++.||+||+|||+.+. .+|+ 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~~p~ip~-  149 (369)
T 3d1c_A           74 TSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE---TYHADYIFVATGDYNFPKKPF-  149 (369)
T ss_dssp             CCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC---CEEEEEEEECCCSTTSBCCCS-
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC---EEEeCEEEECCCCCCccCCCC-
Confidence            1000000000  001223334455667789888764 5555533  567776665   5899999999999763 3444 


Q ss_pred             ccCCceEecchhhhcccC-CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------CCCHHHHHHHHHHHH
Q 011787          195 TIDEKRIVSSTGALALNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMDGEIRKQFQRSLE  266 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~-~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------~~~~~~~~~~~~~l~  266 (477)
                          ..+.+..+...... .+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++       .+++...+.+.+.++
T Consensus       150 ----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~  225 (369)
T 3d1c_A          150 ----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIK  225 (369)
T ss_dssp             ----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHH
T ss_pred             ----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHh
Confidence                22334444433333 357999999999999999999999999999999887763       255777888999999


Q ss_pred             hcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEE-EcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCC-CC
Q 011787          267 KQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FA  343 (477)
Q Consensus       267 ~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i-~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l~  343 (477)
                      +.| |++++++.|.+++.+++...+++.     +++.+ .+|.||+|+|++|+.+.  +...++. +++|++.||++ ++
T Consensus       226 ~~g~v~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~~d~vi~a~G~~~~~~~--~~~~~~~-~~~g~i~v~~~~~~  297 (369)
T 3d1c_A          226 QGARIEMNVHYTVKDIDFNNGQYHISFD-----SGQSVHTPHEPILATGFDATKNP--IVQQLFV-TTNQDIKLTTHDES  297 (369)
T ss_dssp             TTCCEEEECSCCEEEEEEETTEEEEEES-----SSCCEEESSCCEECCCBCGGGSH--HHHHHSC-CTTSCCCBCTTSBB
T ss_pred             hCCcEEEecCcEEEEEEecCCceEEEec-----CCeEeccCCceEEeeccCCccch--hhhhhcc-CCCCCEEechhhcc
Confidence            997 999999999999876666666664     33445 46999999999999865  3444566 67788999986 66


Q ss_pred             CCCCCeEEecccCCCCC----chhHHHHHHHHHHHHHcCC
Q 011787          344 TNIPGVYAIGDVIPGPM----LAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       344 t~~~~vya~GD~~~~~~----~~~~A~~~g~~aa~~i~~~  379 (477)
                      |++|+|||+|||+..+.    ....+.+||+++|++|.+.
T Consensus       298 t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~  337 (369)
T 3d1c_A          298 TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQR  337 (369)
T ss_dssp             SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHH
T ss_pred             cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcc
Confidence            99999999999996543    2346778899999999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=4.3e-34  Score=278.07  Aligned_cols=303  Identities=16%  Similarity=0.156  Sum_probs=201.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||.|.+.  .|...+......     ..+..+........+.. 
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-   74 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA--WHSLHLFSPAGW-----SSIPGWPMPASQGPYPA-   74 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGS--CTTCBCSSCGGG-----SCCSSSCCCCCSSSSCB-
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCC--CCCcEecCchhh-----hhCCCCCCCCCccCCCC-
Confidence            5899999999999999999999999999999999999988652  232221111110     00111111100001110 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEE-EEecCCceEEEEecEEEEccCC--CC--CCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVS-VDTIEGGNTVVKGKNIIIATGS--DV--KSLPGI  194 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~-v~~~~g~~~~i~~d~lvlAtG~--~~--~~~~g~  194 (477)
                               ...+...+....++.++++..+ .+..+  +.+.+. |.+.++   ++.||+||+|||.  .|  +.+|+.
T Consensus        75 ---------~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vV~AtG~~~~~~~~~~~g~  142 (357)
T 4a9w_A           75 ---------RAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR---QWLARAVISATGTWGEAYTPEYQGL  142 (357)
T ss_dssp             ---------HHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC---EEEEEEEEECCCSGGGBCCCCCTTG
T ss_pred             ---------HHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC---EEEeCEEEECCCCCCCCCCCCCCCc
Confidence                     0122333445566678887765 44444  345666 777665   7999999999995  44  344554


Q ss_pred             ccCCceEecchhh-hcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC-CCcCCCC--CHHHHHHHHHHHH----
Q 011787          195 TIDEKRIVSSTGA-LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADIVPSM--DGEIRKQFQRSLE----  266 (477)
Q Consensus       195 ~~~~~~~~~~~~~-~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~~~~~--~~~~~~~~~~~l~----  266 (477)
                      ........+..+. ......+++++|||+|.+|+|+|..|++.+ +|+++.+. +.+++..  ...+.+.+.+.+.    
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (357)
T 4a9w_A          143 ESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQE  221 (357)
T ss_dssp             GGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------
T ss_pred             cccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhcccc
Confidence            4222233333332 223335799999999999999999999998 69999988 4555532  3344333333332    


Q ss_pred             ------------------------hcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC
Q 011787          267 ------------------------KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG  322 (477)
Q Consensus       267 ------------------------~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~  322 (477)
                                              +.|+ +..+..+.+++  .+.  +.+.     +++++++|.|++|+|++|++++  
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~--~~~--v~~~-----~g~~i~~D~vi~a~G~~p~~~~--  289 (357)
T 4a9w_A          222 GREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFS--PTG--MQWA-----DGTERAFDAVIWCTGFRPALSH--  289 (357)
T ss_dssp             ------------CBCCCHHHHHHHHTTC-CCEECCCSEEE--TTE--EECT-----TSCEEECSEEEECCCBCCCCGG--
T ss_pred             ccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEe--CCe--eEEC-----CCCEecCCEEEECCCcCCCCcc--
Confidence                                    3343 44455555553  222  3332     5678999999999999999886  


Q ss_pred             ccccceeecCCCCeecCCC--CCCCCCCeEEec--ccCC-CCCchhHHHHHHHHHHHHHcCC
Q 011787          323 LDKIGVETDKMGRIPVNER--FATNIPGVYAIG--DVIP-GPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       323 ~~~~gl~~~~~g~i~vd~~--l~t~~~~vya~G--D~~~-~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      +++.++. +++|+|.||++  ++|+.|+|||+|  ||+. .+.....|..||+.+|++|...
T Consensus       290 l~~~gl~-~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~  350 (357)
T 4a9w_A          290 LKGLDLV-TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAY  350 (357)
T ss_dssp             GTTTTCB-CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHH
T ss_pred             cCccccc-CCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            6778888 78899999999  889999999999  6665 5677888999999999999753

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=5.1e-34  Score=284.88  Aligned_cols=289  Identities=20%  Similarity=0.257  Sum_probs=207.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH---CCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE  118 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~---~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  118 (477)
                      .++||+|||||+||++||..|++   .|.+|+|||+++...       ..|.....             .. +..     
T Consensus         3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~~~~~~-------------~~-g~~-----   56 (437)
T 3sx6_A            3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVPSNPWV-------------GV-GWK-----   56 (437)
T ss_dssp             TSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGGGHHHH-------------HH-TSS-----
T ss_pred             CCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccCCcccc-------------cc-Ccc-----
Confidence            35799999999999999999999   799999999965321       01111000             00 000     


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCcc
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI  196 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~  196 (477)
                       +           .+.+...+...+++.+++++.+.+..++.....|.+.++  .++.||+||+|||++|.  .+||+..
T Consensus        57 -~-----------~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~i~~d~lviAtG~~~~~~~ipG~~~  122 (437)
T 3sx6_A           57 -E-----------RDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADG--NTVHYDYLMIATGPKLAFENVPGSDP  122 (437)
T ss_dssp             -C-----------HHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCCEECGGGSTTCST
T ss_pred             -C-----------HHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCC--CEEECCEEEECCCCCcCcccCCCCCc
Confidence             0           011112234556678999999999999887767888777  67999999999999884  4677653


Q ss_pred             CCc---eEecchhhhcccC------CCCeeEEEcccHHH------HHHH----HHHHHcCCc-----EEEEEeCCCcCC-
Q 011787          197 DEK---RIVSSTGALALNE------VPKKLVVIGAGYIG------LEMG----SVWARLGSE-----VTVVEFAADIVP-  251 (477)
Q Consensus       197 ~~~---~~~~~~~~~~~~~------~~~~v~IiG~G~~g------~e~a----~~l~~~g~~-----Vtli~~~~~~~~-  251 (477)
                      ...   .+.+.+++..+.+      .+++++|||+|+.+      +|+|    ..+++.|.+     |+++++.+.+.+ 
T Consensus       123 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~  202 (437)
T 3sx6_A          123 HEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHL  202 (437)
T ss_dssp             TTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCT
T ss_pred             ccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCcccccc
Confidence            211   3445555443321      14567899986543      7777    666677764     999999887632 


Q ss_pred             ---CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCc---eEEEEcCEEEEeecCCCCCCCCCccc
Q 011787          252 ---SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE---KTILEADVVLVSAGRTPFTAGLGLDK  325 (477)
Q Consensus       252 ---~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~---~~~i~~D~vi~a~G~~p~~~~l~~~~  325 (477)
                         .+ ++....+++.++++||++++++.|++++.  +++.+.... .++.   +.++++|.+++++|..|+...  .+.
T Consensus       203 ~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~-~~g~~~~~~~i~~D~vv~~~g~~~~~~~--~~~  276 (437)
T 3sx6_A          203 GIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVD-EKGETIKEMVLPVKFGMMIPAFKGVPAV--AGV  276 (437)
T ss_dssp             TTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEEC-TTSCEEEEEEEECSEEEEECCEECCHHH--HTS
T ss_pred             ccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecc-cCCccccceEEEEeEEEEcCCCcCchhh--hcc
Confidence               23 35788899999999999999999999953  444443211 1122   678999999999998887543  233


Q ss_pred             cceeecCCCCeecCCCCCC-CCCCeEEecccCCC------------CCchhHHHHHHHHHHHHHc
Q 011787          326 IGVETDKMGRIPVNERFAT-NIPGVYAIGDVIPG------------PMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       326 ~gl~~~~~g~i~vd~~l~t-~~~~vya~GD~~~~------------~~~~~~A~~~g~~aa~~i~  377 (477)
                      .++ .+++|+|.||+++|| ++|||||+|||+..            |.++..|..||+.+|+||.
T Consensus       277 ~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~  340 (437)
T 3sx6_A          277 EGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK  340 (437)
T ss_dssp             TTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            466 577899999999998 99999999999963            5688999999999999997

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=4.5e-34  Score=284.38  Aligned_cols=287  Identities=22%  Similarity=0.277  Sum_probs=202.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ++|||||||+||++||.+|++.+  .+|+|||+++...       ..|..        +.     ........++...++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l--------~~-----v~~g~~~~~~i~~~~   62 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAF--------PH-----LAMGWRKFEDISVPL   62 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGH--------HH-----HHHTCSCGGGSEEES
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccH--------HH-----HhcCCCCHHHhhhcH
Confidence            47999999999999999999864  7999999965320       01111        00     111111122222221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-CCCCCCccCCce
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-KSLPGITIDEKR  200 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~~~~g~~~~~~~  200 (477)
                                        ..++++.+++++.+++..+|.+..+|.+++|  +++.||+||||||+++ +.+||.......
T Consensus        63 ------------------~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g--~~i~YD~LViAtG~~~~~~i~G~~e~~~~  122 (430)
T 3hyw_A           63 ------------------APLLPKFNIEFINEKAESIDPDANTVTTQSG--KKIEYDYLVIATGPKLVFGAEGQEENSTS  122 (430)
T ss_dssp             ------------------TTTGGGGTEEEECSCEEEEETTTTEEEETTC--CEEECSEEEECCCCEEECCSBTHHHHSCC
T ss_pred             ------------------HHHHHHCCcEEEEeEEEEEECCCCEEEECCC--CEEECCEEEEeCCCCccCCccCcccCcCC
Confidence                              2345667999999999999998889999888  7899999999999976 345665433445


Q ss_pred             EecchhhhcccC------CCCeeEEEcccH------HHHHH----HHHHHHcC----CcEEEEEeCCCcC---CCCCHHH
Q 011787          201 IVSSTGALALNE------VPKKLVVIGAGY------IGLEM----GSVWARLG----SEVTVVEFAADIV---PSMDGEI  257 (477)
Q Consensus       201 ~~~~~~~~~~~~------~~~~v~IiG~G~------~g~e~----a~~l~~~g----~~Vtli~~~~~~~---~~~~~~~  257 (477)
                      +.+.+++..+.+      ..+.++|+|++.      .+.|+    +..+.+.+    .+|++++..+.+.   +..++..
T Consensus       123 ~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~  202 (430)
T 3hyw_A          123 ICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGAS  202 (430)
T ss_dssp             CSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTH
T ss_pred             cccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHH
Confidence            566666544322      134455565542      22343    34455555    4688887766543   3456678


Q ss_pred             HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccc--eeecCCCC
Q 011787          258 RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG--VETDKMGR  335 (477)
Q Consensus       258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~g~  335 (477)
                      .+.+++.++++||++++++.|++++  ++++.+..   .+++++++++|.+++++|.+|+..   +...+  +..+.+|+
T Consensus       203 ~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~---~~g~~~~i~~d~vi~~~G~~~~~~---~~~~~~~l~~~~~g~  274 (430)
T 3hyw_A          203 KRLVEDLFAERNIDWIANVAVKAIE--PDKVIYED---LNGNTHEVPAKFTMFMPSFQGPEV---VASAGDKVANPANKM  274 (430)
T ss_dssp             HHHHHHHHHHTTCEEECSCEEEEEC--SSEEEEEC---TTSCEEEEECSEEEEECEEECCHH---HHTTCTTTBCTTTCC
T ss_pred             HHHHHHHHHhCCeEEEeCceEEEEe--CCceEEEe---eCCCceEeecceEEEeccCCCchH---HHhcccccccCCceE
Confidence            8889999999999999999999994  44544432   345678999999999999999753   33333  44455678


Q ss_pred             eecCCCCC-CCCCCeEEecccCCC------------CCchhHHHHHHHHHHHHHcC
Q 011787          336 IPVNERFA-TNIPGVYAIGDVIPG------------PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       336 i~vd~~l~-t~~~~vya~GD~~~~------------~~~~~~A~~~g~~aa~~i~~  378 (477)
                      |.||++|| |++|||||+|||+..            |.+++.|.+||+++|+||+.
T Consensus       275 i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~  330 (430)
T 3hyw_A          275 VIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN  330 (430)
T ss_dssp             BCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999 999999999999853            45788999999999999973

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=100.00  E-value=3.5e-33  Score=278.76  Aligned_cols=281  Identities=18%  Similarity=0.276  Sum_probs=201.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHH-C------CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQ-L------GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS  115 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~-~------g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~  115 (477)
                      .+||+||||||||++||..|++ .      |.+|+|||+.+.+||.| +.++.|.+....                    
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~-~~gv~p~~~~~~--------------------   61 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV-RSGVAPDHPKIK--------------------   61 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH-HHTSCTTCTGGG--------------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcc-ccccCCCCCCHH--------------------
Confidence            5799999999999999999999 7      89999999988899887 445555422110                    


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCC-CC--CCC
Q 011787          116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLP  192 (477)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~-~~--~~~  192 (477)
                                        .+...+...+++.+++++.+..  ++.   .|.+.++   .+.||+||||||+. ++  .+|
T Consensus        62 ------------------~~~~~~~~~~~~~~v~~~~~v~--v~~---~v~~~~~---~~~~d~lViAtG~~~~~~~~ip  115 (456)
T 1lqt_A           62 ------------------SISKQFEKTAEDPRFRFFGNVV--VGE---HVQPGEL---SERYDAVIYAVGAQSDRMLNIP  115 (456)
T ss_dssp             ------------------GGHHHHHHHHTSTTEEEEESCC--BTT---TBCHHHH---HHHSSEEEECCCCCEECCCCCT
T ss_pred             ------------------HHHHHHHHHHhcCCCEEEeeEE--ECC---EEEECCC---eEeCCEEEEeeCCCCCCCCCCC
Confidence                              0111223445567888876622  221   2333333   47899999999997 43  345


Q ss_pred             CCccCCceEecchhhh-----------cccC-CCCeeEEEcccHHHHHHHHHHHHc--------------------C-Cc
Q 011787          193 GITIDEKRIVSSTGAL-----------ALNE-VPKKLVVIGAGYIGLEMGSVWARL--------------------G-SE  239 (477)
Q Consensus       193 g~~~~~~~~~~~~~~~-----------~~~~-~~~~v~IiG~G~~g~e~a~~l~~~--------------------g-~~  239 (477)
                      |.+  ...+++..++.           .+.. .+++++|||+|++|+|+|..|++.                    | .+
T Consensus       116 G~~--~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~  193 (456)
T 1lqt_A          116 GED--LPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQE  193 (456)
T ss_dssp             TTT--STTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCE
T ss_pred             CCC--CCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcE
Confidence            544  33466665542           2221 478999999999999999999874                    5 48


Q ss_pred             EEEEEeCCCcCCCCCH-------------------HH------------------HHHHHHHHHh------cCcEEEeCc
Q 011787          240 VTVVEFAADIVPSMDG-------------------EI------------------RKQFQRSLEK------QKMKFMLKT  276 (477)
Q Consensus       240 Vtli~~~~~~~~~~~~-------------------~~------------------~~~~~~~l~~------~gv~~~~~~  276 (477)
                      |+++.|++.+.+.+.+                   ++                  .+.+.+.+++      +||++++++
T Consensus       194 V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~  273 (456)
T 1lqt_A          194 VVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLT  273 (456)
T ss_dssp             EEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSE
T ss_pred             EEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCC
Confidence            9999998876543321                   11                  2344455555      799999999


Q ss_pred             eEEEEEEcCCeEEEEEeec-------------CCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCC
Q 011787          277 KVVGVDLSGDGVKLTLEPA-------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA  343 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~-------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~  343 (477)
                      .+.++..++....+++...             .+++.++++||.|++|+|++|+..      .+++++++|++.+|+++|
T Consensus       274 ~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l------~gl~~d~~g~i~vn~~~r  347 (456)
T 1lqt_A          274 SPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPT------PGLPFDDQSGTIPNVGGR  347 (456)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCC------TTSCCBTTTTBCCEETTE
T ss_pred             CCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCC------CCCcccCCCCeeECCCCc
Confidence            9999986533212333210             112335799999999999999872      357778889999999999


Q ss_pred             -CCCCCeEEecccCCCCC-chhHHHHHHHHHHHHHcC
Q 011787          344 -TNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       344 -t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~~  378 (477)
                       |+.|+|||+|||+.+|. ....|+.+|..+|.+|+.
T Consensus       348 vt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          348 INGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             ETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence             89999999999997776 566899999999999974

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=4.7e-33  Score=275.83  Aligned_cols=284  Identities=19%  Similarity=0.214  Sum_probs=206.9

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~---~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +||+|||||+||+++|..|++   .|.+|+|||+++.++..    .+.+..                ..........   
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~----~~~~~~----------------~~~~~~~~~~---   58 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR----PALPHV----------------AIGVRDVDEL---   58 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC----CSSCCC----------------CSSCCCCCCE---
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec----cchhhc----------------ccCCcCHHHH---
Confidence            589999999999999999999   89999999997644221    111100                0000001111   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCC--ceEEEEecEEEEccCCCCC--CCCCCcc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG--GNTVVKGKNIIIATGSDVK--SLPGITI  196 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g--~~~~i~~d~lvlAtG~~~~--~~~g~~~  196 (477)
                                     ...+...+++.+++++.+++..++.+...|.+.++  ...++.||+||+|||++|.  .+||+..
T Consensus        59 ---------------~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~  123 (409)
T 3h8l_A           59 ---------------KVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDK  123 (409)
T ss_dssp             ---------------EEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHH
T ss_pred             ---------------HHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhh
Confidence                           11123455667999999988888766444554444  3356999999999999875  3566543


Q ss_pred             CCceEecchhhhcccC----CCCeeEEEcccH-------------------------HHHHHH----HHHHHcCC----c
Q 011787          197 DEKRIVSSTGALALNE----VPKKLVVIGAGY-------------------------IGLEMG----SVWARLGS----E  239 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~----~~~~v~IiG~G~-------------------------~g~e~a----~~l~~~g~----~  239 (477)
                      ....+.+.++...+..    ..++++|||+|.                         .++|+|    ..+++.|.    +
T Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~  203 (409)
T 3h8l_A          124 YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH  203 (409)
T ss_dssp             HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEE
T ss_pred             cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeE
Confidence            2233444444433322    235677999991                         466666    45667774    8


Q ss_pred             EEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       240 Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      |+++++.+ +++.+++++.+.+.+.+++.||+++++++|++++.  ++  +++.     +++++++|.+++++|++|+..
T Consensus       204 v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~-----~g~~~~~D~vi~a~G~~~~~~  273 (409)
T 3h8l_A          204 VTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDE-----KGNTIPADITILLPPYTGNPA  273 (409)
T ss_dssp             EEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECS--SE--EEET-----TSCEEECSEEEEECCEECCHH
T ss_pred             EEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEEC-----CCCEEeeeEEEECCCCCccHH
Confidence            99999988 77888999999999999999999999999999954  33  4443     567899999999999999853


Q ss_pred             CCCcccc--ceeecCCCCeecCCCCCC-CCCCeEEecccCC--CCCchhHHHHHHHHHHHHHcCC
Q 011787          320 GLGLDKI--GVETDKMGRIPVNERFAT-NIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       320 ~l~~~~~--gl~~~~~g~i~vd~~l~t-~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                         ++..  ++ .+++|++.||+++|| +.|||||+|||+.  .|.++..|..||++||+||.+.
T Consensus       274 ---l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~  334 (409)
T 3h8l_A          274 ---LKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR  334 (409)
T ss_dssp             ---HHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence               5555  44 366789999999998 8999999999995  5778999999999999999743

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=100.00  E-value=8.5e-33  Score=276.29  Aligned_cols=281  Identities=17%  Similarity=0.220  Sum_probs=199.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+||+||||||||+++|..|++.|  .+|+|||+.+.+||.+ +.++.|.+....                         
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~-~~g~~p~~~~~~-------------------------   59 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV-RFGVAPDHPEVK-------------------------   59 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH-HHTSCTTCGGGG-------------------------
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee-ecccCCCCccHH-------------------------
Confidence            479999999999999999999988  9999999988888764 445544321110                         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCC-C--CCCCCccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITID  197 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~-~--~~~g~~~~  197 (477)
                                   .+...+...+++.+++++.+...  . .  .|.+.+   ..+.||+||||||+.+ +  .+||.+  
T Consensus        60 -------------~~~~~~~~~~~~~gv~~~~~~~v--~-~--~V~~~~---~~~~~d~lVlAtGs~~~~~~~ipG~~--  116 (460)
T 1cjc_A           60 -------------NVINTFTQTARSDRCAFYGNVEV--G-R--DVTVQE---LQDAYHAVVLSYGAEDHQALDIPGEE--  116 (460)
T ss_dssp             -------------GHHHHHHHHHTSTTEEEEBSCCB--T-T--TBCHHH---HHHHSSEEEECCCCCEECCCCCTTTT--
T ss_pred             -------------HHHHHHHHHHHhCCcEEEeeeEE--e-e--EEEecc---ceEEcCEEEEecCcCCCCCCCCCCCC--
Confidence                         01112334556678887765321  1 1  122222   2368999999999986 3  345543  


Q ss_pred             CceEecchhhhc----------cc-C-CCCeeEEEcccHHHHHHHHHHH--------------------HcCC-cEEEEE
Q 011787          198 EKRIVSSTGALA----------LN-E-VPKKLVVIGAGYIGLEMGSVWA--------------------RLGS-EVTVVE  244 (477)
Q Consensus       198 ~~~~~~~~~~~~----------~~-~-~~~~v~IiG~G~~g~e~a~~l~--------------------~~g~-~Vtli~  244 (477)
                      ...+++..++..          +. . .+++++|||+|++|+|+|..|+                    +.+. +|+++.
T Consensus       117 ~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~  196 (460)
T 1cjc_A          117 LPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVG  196 (460)
T ss_dssp             STTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEEC
T ss_pred             CCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEE
Confidence            445677665521          11 1 4799999999999999999998                    5677 799999


Q ss_pred             eCCCc--------------CCCC-------------------CHH---HHHHHHHHHHh--------------cCcEEEe
Q 011787          245 FAADI--------------VPSM-------------------DGE---IRKQFQRSLEK--------------QKMKFML  274 (477)
Q Consensus       245 ~~~~~--------------~~~~-------------------~~~---~~~~~~~~l~~--------------~gv~~~~  274 (477)
                      |++.+              +|..                   +..   +.+.+.+.+++              +||++++
T Consensus       197 r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~  276 (460)
T 1cjc_A          197 RRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRF  276 (460)
T ss_dssp             SSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEEC
T ss_pred             cCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEEC
Confidence            98865              2210                   110   22334445545              8999999


Q ss_pred             CceEEEEEEcC-C-eE-EEEEeec------------CCCceEEEEcCEEEEeecCCCCCCCCCccccce-eecCCCCeec
Q 011787          275 KTKVVGVDLSG-D-GV-KLTLEPA------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV-ETDKMGRIPV  338 (477)
Q Consensus       275 ~~~v~~i~~~~-~-~~-~v~~~~~------------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl-~~~~~g~i~v  338 (477)
                      ++.+.++..++ + .+ .+++...            .+++.++++||.|++++|++|+..      .|+ +++++|+|.+
T Consensus       277 ~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l------~gl~~~d~~g~i~v  350 (460)
T 1cjc_A          277 FRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI------DPSVPFDPKLGVVP  350 (460)
T ss_dssp             SEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC------CTTSCCBTTTTBCC
T ss_pred             CCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC------CCCcccccCCCeeE
Confidence            99999998763 3 33 2443311            023346899999999999999972      467 7888899999


Q ss_pred             CCCCCCC-CCCeEEecccCCCCC-chhHHHHHHHHHHHHHcC
Q 011787          339 NERFATN-IPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       339 d~~l~t~-~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~~  378 (477)
                      |+++||+ +|+|||+|||+.+|. .+..|+.+|+.+|.+|++
T Consensus       351 n~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          351 NMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             EETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence            9999998 799999999997665 567899999999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=100.00  E-value=7.9e-33  Score=290.82  Aligned_cols=296  Identities=21%  Similarity=0.228  Sum_probs=215.8

Q ss_pred             hhhhcccCCCcceeccccccCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhh
Q 011787           14 LSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL   93 (477)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l   93 (477)
                      +..|..|+..+++......+.. .++....+||+|||||+||++||..|++.|++|+|||+++.+||++....+.|.+. 
T Consensus       363 ~~~C~vnp~~g~e~~~~~~~~~-~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~-  440 (690)
T 3k30_A          363 PIRCTQNPSMGEEWRRGWHPER-IRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLS-  440 (690)
T ss_dssp             CCCCSSCTTTTTTTTTCCCSSC-CCCCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCG-
T ss_pred             cccCCcCcccCcccccccCccc-cCcccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchh-
Confidence            4578888888887654333222 23445678999999999999999999999999999999999999876544444221 


Q ss_pred             hhhhHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEecCCce
Q 011787           94 LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGN  172 (477)
Q Consensus        94 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~  172 (477)
                                                ++..           +..++...+.+. ++++..++.         +...++  
T Consensus       441 --------------------------~~~~-----------~~~~~~~~~~~~~gv~~~~~~~---------v~~~~~--  472 (690)
T 3k30_A          441 --------------------------AWGR-----------VKEYREAVLAELPNVEIYRESP---------MTGDDI--  472 (690)
T ss_dssp             --------------------------GGGH-----------HHHHHHHHHHTCTTEEEESSCC---------CCHHHH--
T ss_pred             --------------------------HHHH-----------HHHHHHHHHHHcCCCEEEECCe---------ecHHHH--
Confidence                                      1111           112223344444 777665531         222222  


Q ss_pred             EEEEecEEEEccCCCCC----------CCCCCccCCceEecchhhhccc-CCCCeeEEEc--ccHHHHHHHHHHHHcCCc
Q 011787          173 TVVKGKNIIIATGSDVK----------SLPGITIDEKRIVSSTGALALN-EVPKKLVVIG--AGYIGLEMGSVWARLGSE  239 (477)
Q Consensus       173 ~~i~~d~lvlAtG~~~~----------~~~g~~~~~~~~~~~~~~~~~~-~~~~~v~IiG--~G~~g~e~a~~l~~~g~~  239 (477)
                      .++.||+||+|||+.|.          .+|+.  +...+++..+..... ..+++++|||  +|.+|+|+|..|++.|.+
T Consensus       473 ~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~--~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~  550 (690)
T 3k30_A          473 VEFGFEHVITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYE  550 (690)
T ss_dssp             HHTTCCEEEECCCEEECSSCCSSSCSSCCCBC--TTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCE
T ss_pred             hhcCCCEEEEcCCCccccccccccCCCCCCCC--CCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCe
Confidence            45789999999999842          23443  345778877766543 3467899999  999999999999999999


Q ss_pred             EEEEEeCCCcCCCCC-HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          240 VTVVEFAADIVPSMD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       240 Vtli~~~~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      |+++++.+.+++..+ +.....+.+.+++.||+++++++|++++.  +++.+..  ..+++++++++|.||+|+|++|+.
T Consensus       551 Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~~--~~~~~~~~i~aD~VV~A~G~~p~~  626 (690)
T 3k30_A          551 VSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA--GGVTVRD--TYASIERELECDAVVMVTARLPRE  626 (690)
T ss_dssp             EEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET--TEEEEEE--TTTCCEEEEECSEEEEESCEEECC
T ss_pred             eEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC--CeEEEEE--ccCCeEEEEECCEEEECCCCCCCh
Confidence            999999988776443 55677888999999999999999999964  3444432  234567789999999999999998


Q ss_pred             CCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787          319 AGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       319 ~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      .+  ++.++..    +.       +|+.|+|||+|||+..+ ....|..||+.||.+|.+.
T Consensus       627 ~l--~~~l~~~----~~-------~t~~~~VyaiGD~~~~~-~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          627 EL--YLDLVAR----RD-------AGEIASVRGIGDAWAPG-TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             HH--HHHHHHH----HH-------HTSCSEEEECGGGTSCB-CHHHHHHHHHHHHHHTTCC
T ss_pred             HH--HHHHhhh----hc-------ccCCCCEEEEeCCCchh-hHHHHHHHHHHHHHHHHhh
Confidence            74  3332211    11       78999999999999755 4455999999999999876

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=3.3e-31  Score=265.86  Aligned_cols=308  Identities=15%  Similarity=0.169  Sum_probs=197.4

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCe---EEEEecCCCCCceeecc---CccCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQ---LGLK---TTCIEKRGALGGTCLNV---GCIPSKALLHSSHMYHEAMHSFASHGVKF  114 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~---~g~~---V~lie~~~~~GG~~~~~---~~~p~~~l~~~~~~~~~~~~~~~~~g~~~  114 (477)
                      +||+|||||+||++||..|++   .|.+   |+|||+++.+||+|.+.   +|.|...... ...+.............+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~-~~~y~~l~~~~~~~~~~~   81 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH-SSMYRYLWSNGPKECLEF   81 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCC-CCCCTTCBCSSCGGGTCB
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCc-CccccchhhcCChhhccc
Confidence            699999999999999999999   9999   99999999999999764   2322100000 000000000000000000


Q ss_pred             cccccChHHHHH---HHHHHHHHHHHHHHHHhhhCCeE--EEEe-EEEEec--CC--EEEEEecC---CceEEEEecEEE
Q 011787          115 SSVEVDLPAMMA---QKDKAVSNLTRGIEGLFKKNKVT--YVKG-YGKFIS--PS--EVSVDTIE---GGNTVVKGKNII  181 (477)
Q Consensus       115 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~--~~--~~~v~~~~---g~~~~i~~d~lv  181 (477)
                      .  .+++..-..   ........+.+++....++.+++  +..+ .+..++  .+  .+.|.+.+   |...++.||+||
T Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV  159 (464)
T 2xve_A           82 A--DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV  159 (464)
T ss_dssp             T--TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             C--CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence            0  011110000   00000011222333344444554  4333 444442  22  55665543   434678999999


Q ss_pred             EccC--CCCCC--CCCCccCCceEecchhhhccc-CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHH
Q 011787          182 IATG--SDVKS--LPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE  256 (477)
Q Consensus       182 lAtG--~~~~~--~~g~~~~~~~~~~~~~~~~~~-~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~  256 (477)
                      +|||  +.|..  +||.+.....++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+++++++.+++..-  
T Consensus       160 vAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~--  237 (464)
T 2xve_A          160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKW--  237 (464)
T ss_dssp             ECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCC--
T ss_pred             ECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCC--
Confidence            9999  77743  455443223455555544332 3589999999999999999999999999999999887765321  


Q ss_pred             HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCe
Q 011787          257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI  336 (477)
Q Consensus       257 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i  336 (477)
                                ..||+++  ..|++++  +++  +.+.     +++++++|.||+|+|++|+.+++. +..++..+++|++
T Consensus       238 ----------~~~V~~~--~~V~~i~--~~~--V~~~-----dG~~i~~D~Vi~atG~~p~~~~l~-~~~gl~~~~~~~v  295 (464)
T 2xve_A          238 ----------PENWDER--PNLVRVD--TEN--AYFA-----DGSSEKVDAIILCTGYIHHFPFLN-DDLRLVTNNRLWP  295 (464)
T ss_dssp             ----------CTTEEEC--SCEEEEC--SSE--EEET-----TSCEEECSEEEECCCBCCCCTTBC-TTTCCCCCSSSCC
T ss_pred             ----------CCceEEc--CCeEEEe--CCE--EEEC-----CCCEEeCCEEEECCCCCCCCCCcC-cccccccCCCccc
Confidence                      2478876  6788884  333  4443     556899999999999999998753 3467877765555


Q ss_pred             ecCCC---CCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          337 PVNER---FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       337 ~vd~~---l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                       ++.+   ++|+.|+|||+||++.. ..++.|..||+++|++|.|..
T Consensus       296 -~~~~~~~~~t~~p~i~aiGd~~~~-~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          296 -LNLYKGVVWEDNPKFFYIGMQDQW-YSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             -SSEETTTEESSSTTEEECSCSCCS-SCHHHHHHHHHHHHHHHTTSS
T ss_pred             -ccccceEecCCCCCEEEEeCcccc-cchHHHHHHHHHHHHHHcCCC
Confidence             4433   56899999999998864 468899999999999999763

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.98  E-value=1.5e-30  Score=262.17  Aligned_cols=316  Identities=15%  Similarity=0.178  Sum_probs=202.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-----CeEEEEecCCCCCceeeccCcc-Cchhhh-----------hhhHHHHHHH
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLNVGCI-PSKALL-----------HSSHMYHEAM  104 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-----~~V~lie~~~~~GG~~~~~~~~-p~~~l~-----------~~~~~~~~~~  104 (477)
                      ..+||+|||||+||+++|..|++.|     .+|+|||+++.+|...   +.. |...+.           .....+ .+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~---~~~~~~~~~~~~~~~~l~~~~~p~~~~-~~~  104 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG---NTLVSQSELQISFLKDLVSLRNPTSPY-SFV  104 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG---GGCCSSCBCSSCTTSSSSTTTCTTCTT-SHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC---CCCCCCCcCCcchhhccccccCCCCCC-Chh
Confidence            4579999999999999999999998     9999999988777211   111 110000           000000 000


Q ss_pred             hhhhhCCcc-----ccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC----CE---EEEEecCC-
Q 011787          105 HSFASHGVK-----FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP----SE---VSVDTIEG-  170 (477)
Q Consensus       105 ~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~----~~---~~v~~~~g-  170 (477)
                      .++...+..     .......           ...+..++....++.++++..+. +..++.    ..   +.|.+.++ 
T Consensus       105 ~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~  173 (463)
T 3s5w_A          105 NYLHKHDRLVDFINLGTFYPC-----------RMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD  173 (463)
T ss_dssp             HHHHHTTCHHHHHHHCCSCCB-----------HHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred             HhhhhcCceeecccccCCCCC-----------HHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC
Confidence            000000000     0000000           11223333444555567776654 555442    22   35655544 


Q ss_pred             -ceEEEEecEEEEccCCCCCCCCCCc-cCC--ceEecchhhhcccC------CCCeeEEEcccHHHHHHHHHHHHc--CC
Q 011787          171 -GNTVVKGKNIIIATGSDVKSLPGIT-IDE--KRIVSSTGALALNE------VPKKLVVIGAGYIGLEMGSVWARL--GS  238 (477)
Q Consensus       171 -~~~~i~~d~lvlAtG~~~~~~~g~~-~~~--~~~~~~~~~~~~~~------~~~~v~IiG~G~~g~e~a~~l~~~--g~  238 (477)
                       +..++.||+||+|||+.|..+++.+ ...  ..+++.........      .+++|+|||+|.+|+|+|..|++.  +.
T Consensus       174 g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~  253 (463)
T 3s5w_A          174 GEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSV  253 (463)
T ss_dssp             SCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTE
T ss_pred             CceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCC
Confidence             2348999999999999876554333 223  23333333222332      479999999999999999999999  89


Q ss_pred             cEEEEEeCCCcCCCC--------------------CHHHHHHHHHHHHh--------------------------cCcEE
Q 011787          239 EVTVVEFAADIVPSM--------------------DGEIRKQFQRSLEK--------------------------QKMKF  272 (477)
Q Consensus       239 ~Vtli~~~~~~~~~~--------------------~~~~~~~~~~~l~~--------------------------~gv~~  272 (477)
                      +|++++|.+.++|..                    +++....+.+.+..                          .||++
T Consensus       254 ~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  333 (463)
T 3s5w_A          254 QADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAF  333 (463)
T ss_dssp             EEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEE
T ss_pred             eEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence            999999999876522                    22222333333222                          59999


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC--CCCCCccccceeecCCCCeecCCCCCCC-----
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF--TAGLGLDKIGVETDKMGRIPVNERFATN-----  345 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~--~~~l~~~~~gl~~~~~g~i~vd~~l~t~-----  345 (477)
                      +++++|++++.+++++.+++.+..++...++++|.||+|+|++|+  ..+  +.......   |++.||+++++.     
T Consensus       334 ~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~--l~~l~~~~---g~i~v~~~~~~~~~~~~  408 (463)
T 3s5w_A          334 RCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQL--LEPLAEYL---GDHEIGRDYRLQTDERC  408 (463)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTT--TGGGGGGB---C--CCCTTSBCCBCTTB
T ss_pred             EeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccch--hHHHHHHh---CCcccCcccccccCCCC
Confidence            999999999988888888887655666667999999999999999  443  44433322   789999999854     


Q ss_pred             CCCeEEecccC-----CCCCchhHHHHHHHHHHHHHc
Q 011787          346 IPGVYAIGDVI-----PGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       346 ~~~vya~GD~~-----~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      .|+|||+|||.     ..+.+...|.+++.+++..+.
T Consensus       409 ~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~  445 (463)
T 3s5w_A          409 KVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ  445 (463)
T ss_dssp             CSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence            56799999998     346678889999998877664

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.98  E-value=1.4e-32  Score=289.92  Aligned_cols=315  Identities=17%  Similarity=0.234  Sum_probs=214.0

Q ss_pred             hhhhcccCCCcceeccccccCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhh
Q 011787           14 LSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL   93 (477)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l   93 (477)
                      +..|..|+..+++......+. ..++....+||+|||||+||++||..|++.|++|+|||+++.+||+|....+.|....
T Consensus       361 ~~~C~~n~~~g~e~~~~~~~~-~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~  439 (729)
T 1o94_A          361 PMICTQNATAGEEYRRGWHPE-KFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE  439 (729)
T ss_dssp             CCCCSSCTTTTTHHHHCCCTT-CCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGG
T ss_pred             ceeeccCcccccccccccccc-ccccccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHH
Confidence            356888888887643222121 1233445689999999999999999999999999999999999998876665553211


Q ss_pred             hhhhHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceE
Q 011787           94 LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNT  173 (477)
Q Consensus        94 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~  173 (477)
                                                 +..+..+....++.+.     .....++++..+         ..+...++  .
T Consensus       440 ---------------------------~~~~~~~~~~~i~~~~-----~~~~~~v~i~~~---------~~v~~~~~--~  476 (729)
T 1o94_A          440 ---------------------------WSYHRDYRETQITKLL-----KKNKESQLALGQ---------KPMTADDV--L  476 (729)
T ss_dssp             ---------------------------GHHHHHHHHHHHHHHH-----HHSTTCEEECSC---------CCCCHHHH--H
T ss_pred             ---------------------------HHHHHHHHHHHHHHhh-----cccCCceEEEeC---------eEEehhhc--c
Confidence                                       1111111111111100     011124444322         12333333  4


Q ss_pred             EEEecEEEEccCCCC--------C--CCCCCccCCceEecchhhhccc-CCCCeeEEEc--ccHHHHHHHHHHHHcCCcE
Q 011787          174 VVKGKNIIIATGSDV--------K--SLPGITIDEKRIVSSTGALALN-EVPKKLVVIG--AGYIGLEMGSVWARLGSEV  240 (477)
Q Consensus       174 ~i~~d~lvlAtG~~~--------~--~~~g~~~~~~~~~~~~~~~~~~-~~~~~v~IiG--~G~~g~e~a~~l~~~g~~V  240 (477)
                      .+.||+||||||+.+        .  .+||.+.....+++..++.... ..+++|+|||  +|.+|+|+|..|++.|.+|
T Consensus       477 ~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~V  556 (729)
T 1o94_A          477 QYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEV  556 (729)
T ss_dssp             TSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEE
T ss_pred             ccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEE
Confidence            578999999999983        2  2344432134677777765543 3468999999  9999999999999999999


Q ss_pred             EEEEeCCCcCC--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCC----------------CceEE
Q 011787          241 TVVEFAADIVP--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG----------------GEKTI  302 (477)
Q Consensus       241 tli~~~~~~~~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~----------------~~~~~  302 (477)
                      +++++.+ +++  .++.. ...+.+.|+++||++++++.+++++.  +++.+.......                ++..+
T Consensus       557 tlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (729)
T 1o94_A          557 TIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRW  632 (729)
T ss_dssp             EEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEE
T ss_pred             EEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCccee
Confidence            9999988 554  23333 45678888999999999999999963  344443211000                11234


Q ss_pred             EEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 011787          303 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH  382 (477)
Q Consensus       303 i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~  382 (477)
                      +++|.||+|+|.+|++.+  ++.++        ..+|++++|++|+|||+|||+. +..+..|+.||+.||.+|.+..  
T Consensus       633 i~aD~Vv~a~G~~p~~~l--~~~l~--------~~vd~~~~t~~~~VyAiGD~~~-~~~~~~A~~~G~~aA~~i~~~l--  699 (729)
T 1o94_A          633 IEFDSLVLVTGRHSECTL--WNELK--------ARESEWAENDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEAN--  699 (729)
T ss_dssp             EECSEEEEESCEEECCHH--HHHHH--------HTGGGTGGGTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTSSC--
T ss_pred             eeCCEEEECCCCCCChHH--HHHHh--------hhcccccccCCCCeEEEeCccc-hhhHHHHHHHHHHHHHHhhhhc--
Confidence            999999999999999874  33321        1378899999999999999986 5667789999999999998653  


Q ss_pred             CCCCCCce
Q 011787          383 VDYDKVPG  390 (477)
Q Consensus       383 ~~~~~~p~  390 (477)
                       .+..+|+
T Consensus       700 -~~~~~p~  706 (729)
T 1o94_A          700 -PQIAIPY  706 (729)
T ss_dssp             -TTSCCCC
T ss_pred             -ccCCCCe
Confidence             3444453

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.98  E-value=3.8e-33  Score=275.88  Aligned_cols=284  Identities=17%  Similarity=0.215  Sum_probs=202.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ++|||||||+||++||.+|++.+  .+|+|||+++....      |.....              .............++
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~------~p~~~~--------------v~~g~~~~~~~~~~~   62 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT------CYMSNE--------------VIGGDRELASLRVGY   62 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC------STTHHH--------------HHHTSSCGGGGEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC------ccCHHH--------------HhcCCCCHHHHhhCH
Confidence            58999999999999999999875  68999999654211      110000              000011111112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC--CCCCCccCC-
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDE-  198 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~--~~~g~~~~~-  198 (477)
                      .                   .+.+.+++++.+++..+|.....+.+.+|  .++.||+||||||+++.  .+||..... 
T Consensus        63 ~-------------------~~~~~gv~~i~~~v~~id~~~~~v~~~~g--~~i~yd~LviAtG~~~~~~~i~G~~e~~~  121 (401)
T 3vrd_B           63 D-------------------GLRAHGIQVVHDSALGIDPDKKLVKTAGG--AEFAYDRCVVAPGIDLLYDKIEGYSEALA  121 (401)
T ss_dssp             H-------------------HHHHTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECGGGSBTCCSGGG
T ss_pred             H-------------------HHHHCCCEEEEeEEEEEEccCcEEEeccc--ceeecceeeeccCCccccCCccCchhhcc
Confidence            1                   23346999999999999998888888888  78999999999999874  456644211 


Q ss_pred             -c---eEecchhhhccc------CCCCeeEEEccc----------HHHHHHHHHHHHcC--CcEEEEEeCCCcC--CCCC
Q 011787          199 -K---RIVSSTGALALN------EVPKKLVVIGAG----------YIGLEMGSVWARLG--SEVTVVEFAADIV--PSMD  254 (477)
Q Consensus       199 -~---~~~~~~~~~~~~------~~~~~v~IiG~G----------~~g~e~a~~l~~~g--~~Vtli~~~~~~~--~~~~  254 (477)
                       .   ...+.++...+.      ..+..+++.+++          ..+.+++..+++.+  .+|++++..+.+.  +.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~  201 (401)
T 3vrd_B          122 AKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFT  201 (401)
T ss_dssp             GTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHH
T ss_pred             cCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEccccccccccccc
Confidence             1   122223332221      123334433221          24567777777665  5789998887763  3456


Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG  334 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g  334 (477)
                      +.+.+.+.+.+++.||++++++++..++.+++...+++.     +++++++|.+++++|.+|+..   +++.++ .+++|
T Consensus       202 ~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~-----~g~~i~~D~vi~~~g~~~~~~---~~~~gl-~~~~G  272 (401)
T 3vrd_B          202 KGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETS-----FGETFKAAVINLIPPQRAGKI---AQSASL-TNDSG  272 (401)
T ss_dssp             HHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEET-----TSCEEECSEEEECCCEEECHH---HHHTTC-CCTTS
T ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcC-----CCcEEEeeEEEEecCcCCchh---Hhhccc-cccCC
Confidence            667777777788999999999999999887777677664     678999999999999999743   677787 47789


Q ss_pred             CeecCCC-CC-CCCCCeEEecccCCC---CCchhHHHHHHHHHHHHHc
Q 011787          335 RIPVNER-FA-TNIPGVYAIGDVIPG---PMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       335 ~i~vd~~-l~-t~~~~vya~GD~~~~---~~~~~~A~~~g~~aa~~i~  377 (477)
                      +|.||++ || |++|||||+|||+..   |.+++.|.+||+++|+||+
T Consensus       273 ~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~  320 (401)
T 3vrd_B          273 WCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV  320 (401)
T ss_dssp             SBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred             CEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence            9999987 66 899999999999853   5789999999999999997

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.97  E-value=5.7e-31  Score=284.88  Aligned_cols=280  Identities=18%  Similarity=0.217  Sum_probs=198.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+||||||||++||..|++.|++|+|||+++.+||+|.+  | |.. .+...                      ..
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~--~-~k~-~i~~~----------------------~~  180 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD--T-AGE-QIDGM----------------------DS  180 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG--S-SCC-EETTE----------------------EH
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc--C-Ccc-ccCCC----------------------CH
Confidence            4589999999999999999999999999999999899999873  2 210 00000                      00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEe-EEEEecCCEE-E-EE---------ec----CCceEEEEecEEEEcc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKG-YGKFISPSEV-S-VD---------TI----EGGNTVVKGKNIIIAT  184 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~~~-~-v~---------~~----~g~~~~i~~d~lvlAt  184 (477)
                      .   .        +.......+.+ .+++++.+ .+..++.... . +.         ..    ++....+.||+|||||
T Consensus       181 ~---~--------~~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlAT  249 (965)
T 2gag_A          181 S---A--------WIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLAT  249 (965)
T ss_dssp             H---H--------HHHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECC
T ss_pred             H---H--------HHHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECC
Confidence            0   0        00111122233 47887766 3444443221 1 11         10    1222479999999999


Q ss_pred             CCCCCC--CCCCccCCceEecchhhhc----ccC-CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHH
Q 011787          185 GSDVKS--LPGITIDEKRIVSSTGALA----LNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI  257 (477)
Q Consensus       185 G~~~~~--~~g~~~~~~~~~~~~~~~~----~~~-~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~  257 (477)
                      |+.|+.  +|+.+  ...+++..++..    ... .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++    . 
T Consensus       250 Gs~p~~~~ipG~~--~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~----~-  322 (965)
T 2gag_A          250 GAHERPIVFENND--RPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA----A-  322 (965)
T ss_dssp             CEEECCCCCBTCC--STTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH----H-
T ss_pred             CCccCCCCCCCCC--CCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch----h-
Confidence            998754  44443  345666544322    112 358999999999999999999999999999999887652    2 


Q ss_pred             HHHHHHHHHhcCcEEEeCceEEEEEEc-CCeE-EEEEee--cC--CCceEEEEcCEEEEeecCCCCCCCCCccccceeec
Q 011787          258 RKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGV-KLTLEP--AA--GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD  331 (477)
Q Consensus       258 ~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~--~~--~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~  331 (477)
                          .+.+++.||++++++.++++..+ ++++ .+++.+  ..  ++..+++++|.|++++|++||++.  ++.      
T Consensus       323 ----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l--~~~------  390 (965)
T 2gag_A          323 ----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHL--HSQ------  390 (965)
T ss_dssp             ----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHH--HHH------
T ss_pred             ----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHH--HHh------
Confidence                56678899999999999999874 3433 455543  10  122378999999999999999875  232      


Q ss_pred             CCCCeecCCCCC-----CCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          332 KMGRIPVNERFA-----TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       332 ~~g~i~vd~~l~-----t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ..|+|.+|++++     |+.|+|||+|||++.+.+. .|..||+.||.+|++
T Consensus       391 ~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~-~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          391 RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTA-SALSTGAATGAAAAT  441 (965)
T ss_dssp             TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHH-HHHHHHHHHHHHHHH
T ss_pred             CCCcEEEcCcccccccCCCCCCEEEEEecCCchhHH-HHHHHHHHHHHHHHH
Confidence            246788998887     8999999999999887765 899999999999974

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.97  E-value=2.7e-30  Score=258.74  Aligned_cols=300  Identities=13%  Similarity=0.097  Sum_probs=191.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeeccCcc------Cch-------hhhh-------hhHH
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCI------PSK-------ALLH-------SSHM   99 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~------p~~-------~l~~-------~~~~   99 (477)
                      ..+||+|||||++|+++|..|++.|.  +|+|+|+.+.+||.|.+.++.      |..       .+..       ....
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            46899999999999999999999999  999999988999999877642      110       0000       0000


Q ss_pred             HHHH-------HhhhhhCCccccc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEec
Q 011787          100 YHEA-------MHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTI  168 (477)
Q Consensus       100 ~~~~-------~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~  168 (477)
                      +..+       ...+..+.+.... .......+           .+.+....++.+..+..+ .+..+  +.+.+.|.+.
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~  153 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTI-----------QEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYK  153 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHH-----------HHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEe
Confidence            0000       0000001100000 00111111           122222222223333222 34333  2445666655


Q ss_pred             C---Cc-eEEEEecEEEEccCC--CCC--CCCCCccC----CceEecchhhhccc-CCCCeeEEEcccHHHHHHHHHHHH
Q 011787          169 E---GG-NTVVKGKNIIIATGS--DVK--SLPGITID----EKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWAR  235 (477)
Q Consensus       169 ~---g~-~~~i~~d~lvlAtG~--~~~--~~~g~~~~----~~~~~~~~~~~~~~-~~~~~v~IiG~G~~g~e~a~~l~~  235 (477)
                      +   |. ..++.||+||+|||.  .|.  .+||....    ...++++.++.... ..+++|+|||+|.+|+|+|..|++
T Consensus       154 ~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~  233 (447)
T 2gv8_A          154 GTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP  233 (447)
T ss_dssp             ESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT
T ss_pred             ecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH
Confidence            4   53 347999999999998  553  34443210    12355555444332 258999999999999999999999


Q ss_pred             cCCc-EEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEE-EEcCEEEEeec
Q 011787          236 LGSE-VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTI-LEADVVLVSAG  313 (477)
Q Consensus       236 ~g~~-Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~-i~~D~vi~a~G  313 (477)
                      .+.+ |+++++.+.+               ++..||.+  ...|+++..+++.  +++.     +++. +++|.||+|+|
T Consensus       234 ~~~~~V~l~~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~~--v~~~-----dG~~~~~~D~vi~atG  289 (447)
T 2gv8_A          234 VAKHPIYQSLLGGGD---------------IQNESLQQ--VPEITKFDPTTRE--IYLK-----GGKVLSNIDRVIYCTG  289 (447)
T ss_dssp             TSCSSEEEECTTCCS---------------CBCSSEEE--ECCEEEEETTTTE--EEET-----TTEEECCCSEEEECCC
T ss_pred             HhCCcEEEEeCCCCc---------------CCCCCeEE--ecCeEEEecCCCE--EEEC-----CCCEeccCCEEEECCC
Confidence            9999 9999988754               35567764  5788888654443  4443     4445 79999999999


Q ss_pred             CCCCCCC-----CCccccceeecCCCCeecCCCCC---CCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787          314 RTPFTAG-----LGLDKIGVETDKMGRIPVNERFA---TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       314 ~~p~~~~-----l~~~~~gl~~~~~g~i~vd~~l~---t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      ++|+.++     +.....++..  ++.+.++.+.+   ++.|+||++||+.... .++.|..||+++|++|.+.
T Consensus       290 ~~~~~~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-~~~~a~~qa~~~a~~~~g~  360 (447)
T 2gv8_A          290 YLYSVPFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-PFPTSQAQAAFLARVWSGR  360 (447)
T ss_dssp             BCCCCCCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC-HHHHHHHHHHHHHHHHTTS
T ss_pred             CCcCCCCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc-CchHHHHHHHHHHHHHcCC
Confidence            9999887     4311123333  34566666655   7899999999998764 7889999999999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.97  E-value=6.1e-30  Score=268.24  Aligned_cols=280  Identities=21%  Similarity=0.261  Sum_probs=199.2

Q ss_pred             hhhcccCCCcceeccccccCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhh
Q 011787           15 SRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL   94 (477)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~   94 (477)
                      ..|..|+..+++...+      ..+....+||+|||||+||++||..|++.|++|+|||+++.+||++....++|.+.  
T Consensus       351 ~~C~~np~~~~e~~~~------~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~--  422 (671)
T 1ps9_A          351 TSCLVNPRACHETKMP------ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE--  422 (671)
T ss_dssp             CCCSSCTTTTCTTTSC------CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCT--
T ss_pred             eEEEeCcccccccccC------CCCCCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHH--
Confidence            4577777776664432      12334568999999999999999999999999999999989999865544443221  


Q ss_pred             hhhHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEE
Q 011787           95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTV  174 (477)
Q Consensus        95 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~  174 (477)
                                               .+..           +..++...+++.+++++.++....              ..
T Consensus       423 -------------------------~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~--------------~~  452 (671)
T 1ps9_A          423 -------------------------EFYE-----------TLRYYRRMIEVTGVTLKLNHTVTA--------------DQ  452 (671)
T ss_dssp             -------------------------THHH-----------HHHHHHHHHHHHTCEEEESCCCCS--------------SS
T ss_pred             -------------------------HHHH-----------HHHHHHHHHHHcCCEEEeCcEecH--------------HH
Confidence                                     0111           111223445566888877652110              12


Q ss_pred             E-EecEEEEccCCCCCCCCCCccCCceEecchhhhccc-CCCCeeEEEcccHHHHHHHHHHHHcCC--------------
Q 011787          175 V-KGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGS--------------  238 (477)
Q Consensus       175 i-~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~v~IiG~G~~g~e~a~~l~~~g~--------------  238 (477)
                      + .||+||||||++|..++..+.+...+++..+..... ..+++|+|||+|.+|+|+|..|++.|.              
T Consensus       453 ~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g  532 (671)
T 1ps9_A          453 LQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWG  532 (671)
T ss_dssp             SCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTT
T ss_pred             hhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhc
Confidence            3 899999999998864432222334567766655433 358999999999999999999998774              


Q ss_pred             -----------------------cEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEee
Q 011787          239 -----------------------EVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEP  294 (477)
Q Consensus       239 -----------------------~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~  294 (477)
                                             +|+++++.+..+. .+++.....+.+.|+++||++++++++++++  ++++.++ . 
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~-  608 (671)
T 1ps9_A          533 IDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-I-  608 (671)
T ss_dssp             BCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-E-
T ss_pred             ccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-c-
Confidence                                   4566666655443 5667777788899999999999999999996  3454443 2 


Q ss_pred             cCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC-CchhHHHHHHHHHH
Q 011787          295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP-MLAHKAEEDGVACV  373 (477)
Q Consensus       295 ~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~-~~~~~A~~~g~~aa  373 (477)
                        +++.+++++|.||+|+|++||+++  ++.+    .            ...++||++|||+... ..+..|++||..+|
T Consensus       609 --~G~~~~i~~D~Vi~a~G~~p~~~l--~~~l----~------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA  668 (671)
T 1ps9_A          609 --NGETQVLAVDNVVICAGQEPNRAL--AQPL----I------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLA  668 (671)
T ss_dssp             --TTEEEEECCSEEEECCCEEECCTT--HHHH----H------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHH
T ss_pred             --CCeEEEEeCCEEEECCCccccHHH--HHHH----H------------hcCCCEEEECCcCccCchhHHHHHHHHHHHH
Confidence              233468999999999999999875  2321    1            1237899999998654 36889999999999


Q ss_pred             HHH
Q 011787          374 EFL  376 (477)
Q Consensus       374 ~~i  376 (477)
                      .||
T Consensus       669 ~~i  671 (671)
T 1ps9_A          669 LEI  671 (671)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            986

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.96  E-value=6.7e-29  Score=250.97  Aligned_cols=255  Identities=19%  Similarity=0.213  Sum_probs=181.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .++||+|||||+||++||.+|++. ++|+|||+++.+||++......                    .+++..     +.
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~--------------------~~g~~~-----~~  160 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK--------------------QEGFNK-----DS  160 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE--------------------ETTTTE-----EH
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc--------------------cCCCCC-----CH
Confidence            457999999999999999999999 9999999998999986542110                    001100     00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEe-cCCceEEEEecEEEEccCCCCCCC--CCCc
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDT-IEGGNTVVKGKNIIIATGSDVKSL--PGIT  195 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~-~~g~~~~i~~d~lvlAtG~~~~~~--~g~~  195 (477)
                      .           .+...+...+ +.+++++.+. +..++  ...+.+.. .++....+.||+||||||+.|..+  |+.+
T Consensus       161 ~-----------~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~  228 (493)
T 1y56_A          161 R-----------KVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENND  228 (493)
T ss_dssp             H-----------HHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTT
T ss_pred             H-----------HHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCC
Confidence            0           0111122222 4577765543 33332  22233332 344335799999999999988543  4443


Q ss_pred             cCCceEecchhhhccc-----CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787          196 IDEKRIVSSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~-----~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                        ...+++..++..+.     ..+++++|+|+|++++|                                  +.+++.||
T Consensus       229 --~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle----------------------------------~~l~~~GV  272 (493)
T 1y56_A          229 --MPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI----------------------------------QELERWGI  272 (493)
T ss_dssp             --STTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH----------------------------------HHHHHHTC
T ss_pred             --CCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH----------------------------------HHHHhCCc
Confidence              34566666554321     23589999999999988                                  45677899


Q ss_pred             EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceee--cCCCCee-cCCCCCCCCC
Q 011787          271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET--DKMGRIP-VNERFATNIP  347 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~--~~~g~i~-vd~~l~t~~~  347 (477)
                      ++++++.|+++..+++...+.+.     +++++++|.|++|+|++|+.++  ++.+|+.+  +++|++. ||++++ +.|
T Consensus       273 ~v~~~~~v~~i~~~~~v~~v~~~-----~g~~i~aD~Vv~a~G~~p~~~l--~~~~g~~~~~~~~g~i~~vd~~~~-s~~  344 (493)
T 1y56_A          273 DYVHIPNVKRVEGNEKVERVIDM-----NNHEYKVDALIFADGRRPDINP--ITQAGGKLRFRRGYYSPVLDEYHR-IKD  344 (493)
T ss_dssp             EEEECSSEEEEECSSSCCEEEET-----TCCEEECSEEEECCCEEECCHH--HHHTTCCEEEETTEEEECCCTTSE-EET
T ss_pred             EEEeCCeeEEEecCCceEEEEeC-----CCeEEEeCEEEECCCcCcCchH--HHhcCCCccccCCceeeccccccC-cCC
Confidence            99999999999866543344433     4578999999999999999875  56666654  5678887 899999 999


Q ss_pred             CeEEecccCCCCCchhHHHHHHHHHHHHHcCC
Q 011787          348 GVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       348 ~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      +|||+|||++.+ ++..|..||++||.+|.+.
T Consensus       345 ~vya~GD~~~~~-~~~~A~~~g~~aa~~i~~~  375 (493)
T 1y56_A          345 GIYVAGSAVSIK-PHYANYLEGKLVGAYILKE  375 (493)
T ss_dssp             TEEECSTTTCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccCCcc-CHHHHHHHHHHHHHHHHHH
Confidence            999999999754 6788999999999999764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.96  E-value=6.5e-28  Score=245.38  Aligned_cols=303  Identities=21%  Similarity=0.275  Sum_probs=193.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHH-HCCCeEEEEecCCCCCceeecc---Cc---cCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTCLNV---GC---IPSKALLHSSHMYHEAMHSFASHGVKF  114 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~-~~g~~V~lie~~~~~GG~~~~~---~~---~p~~~l~~~~~~~~~~~~~~~~~g~~~  114 (477)
                      .++||+|||||+||+++|..|+ +.|.+|+|+|+++.+||+|...   +|   +|+..+.....  ...   ...+.+. 
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~--~~~---~~~~~~~-   80 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFD--RDL---LQESTWK-   80 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSC--HHH---HHHCCCS-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccc--ccc---ccCCCCc-
Confidence            3589999999999999999999 8899999999999999998643   32   23322211100  000   0011111 


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHHhhhCCe--EEEEe-EEEEe--cC--CEEEEEecCCceEEEEecEEEEccC--
Q 011787          115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI--SP--SEVSVDTIEGGNTVVKGKNIIIATG--  185 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~--~~--~~~~v~~~~g~~~~i~~d~lvlAtG--  185 (477)
                       ....+..+           +...+....++.++  ++..+ .+..+  +.  ..+.|.+.+|  .++.||+||+|||  
T Consensus        81 -~~~~~~~e-----------i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G--~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           81 -TTYITQPE-----------ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG--EVYRAKYVVNAVGLL  146 (540)
T ss_dssp             -BSEEEHHH-----------HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS--CEEEEEEEEECCCSC
T ss_pred             -ccCCCHHH-----------HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC--CEEEeCEEEECCccc
Confidence             11111222           22233344445555  44433 33332  22  4678888888  5799999999999  


Q ss_pred             CCCC--CCCCCc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCCHHHHHHH
Q 011787          186 SDVK--SLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQF  261 (477)
Q Consensus       186 ~~~~--~~~g~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~~~~~~~~  261 (477)
                      +.|.  .+||.+ ..+..+++..........+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+ +|.+++++...+
T Consensus       147 s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~  226 (540)
T 3gwf_A          147 SAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQ  226 (540)
T ss_dssp             CSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHH
T ss_pred             ccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHH
Confidence            5663  456655 334456666555555667899999999999999999999999999999999984 444332221111


Q ss_pred             HHHH----------------------------------------------------------------------------
Q 011787          262 QRSL----------------------------------------------------------------------------  265 (477)
Q Consensus       262 ~~~l----------------------------------------------------------------------------  265 (477)
                      ++.+                                                                            
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (540)
T 3gwf_A          227 IAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAK  306 (540)
T ss_dssp             HHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            1111                                                                            


Q ss_pred             ----------------------------------HhcCcEEEe--CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 011787          266 ----------------------------------EKQKMKFML--KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL  309 (477)
Q Consensus       266 ----------------------------------~~~gv~~~~--~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi  309 (477)
                                                        .+.+|+++.  ...|.++.  ++++.  +.     +++++++|.||
T Consensus       307 ~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it--~~gv~--~~-----dG~~~~~DvIV  377 (540)
T 3gwf_A          307 VAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVT--AKGVV--TE-----DGVLHELDVLV  377 (540)
T ss_dssp             HHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEEC--SSEEE--ET-----TCCEEECSEEE
T ss_pred             HHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEe--cCeEE--cC-----CCCEEECCEEE
Confidence                                              134777775  67788884  34433  32     67889999999


Q ss_pred             EeecCCCCCCCCCccccceeecCCCCeecCC--------C--C-CCCCCCeEEe-cccCCCCCchhHHHHHHHHHHHHHc
Q 011787          310 VSAGRTPFTAGLGLDKIGVETDKMGRIPVNE--------R--F-ATNIPGVYAI-GDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       310 ~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~--------~--l-~t~~~~vya~-GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      +|||++++...  +..  +.+...+++.+++        +  + -.+.||+|.+ |..+........+..|+.++++.|.
T Consensus       378 ~ATGf~~~~~~--~~~--~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          378 FATGFDAVDGN--YRR--IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             ECCCBSCSSHH--HHT--SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHH
T ss_pred             ECCccCccccC--cCc--ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHH
Confidence            99999998732  222  2222222333332        1  2 2578999999 8776544456678888888888774

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.95  E-value=6.3e-27  Score=238.36  Aligned_cols=195  Identities=24%  Similarity=0.213  Sum_probs=126.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      +.++||+|||||+||+++|.+|++.|.+|+|||+++.+||+|. ..+.|..........+..........+........+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~   85 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFAS   85 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCB
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-cCCCCceeecCchhhcccccCcccccCCCccccCCC
Confidence            3468999999999999999999999999999999999999984 556665433233333222111100001111111122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCe--EEEEe-EEEEe---c-CCEEEEEecCCceEEEEecEEEEccC--CCCC--
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI---S-PSEVSVDTIEGGNTVVKGKNIIIATG--SDVK--  189 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~---~-~~~~~v~~~~g~~~~i~~d~lvlAtG--~~~~--  189 (477)
                      ..++...           +....++.++  .+..+ .+..+   + ...+.|.+.+|  .++.||+||+|||  +.|.  
T Consensus        86 ~~ei~~y-----------l~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~lV~AtG~~s~p~~p  152 (545)
T 3uox_A           86 QPEMLRY-----------VNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE--EVVTCRFLISATGPLSASRMP  152 (545)
T ss_dssp             HHHHHHH-----------HHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT--EEEEEEEEEECCCSCBC---C
T ss_pred             HHHHHHH-----------HHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC--CEEEeCEEEECcCCCCCCcCC
Confidence            2222222           2222222232  22222 22222   2 34678888888  7899999999999  6663  


Q ss_pred             CCCCCc-cCCceEecchhhhc-------ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          190 SLPGIT-IDEKRIVSSTGALA-------LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       190 ~~~g~~-~~~~~~~~~~~~~~-------~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+||.+ ..+..+++......       ....+++|+|||+|.+|+|+|..|++.+.+||+++|.+.+
T Consensus       153 ~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          153 DIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            456655 33445666555444       4556899999999999999999999999999999999974

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.94  E-value=1.4e-25  Score=228.70  Aligned_cols=193  Identities=19%  Similarity=0.220  Sum_probs=125.5

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc---Cc---cCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV---GC---IPSKALLHSSHMYHEAMHSFASHGVKF  114 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~---~~---~p~~~l~~~~~~~~~~~~~~~~~g~~~  114 (477)
                      ..++||+|||||+||+++|.+|++.|.+|+|||+++.+||+|...   +|   +|+..+.....  ...   ...+.+. 
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~--~~~---~~~~~~~-   92 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS--PEL---EQEWNWS-   92 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSC--HHH---HHHCCCS-
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccc--ccc---ccCCCCc-
Confidence            346899999999999999999999999999999999999998632   33   34332211100  000   0011111 


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHHhhhCCe--EEEEe-EEEEe--c--CCEEEEEecCCceEEEEecEEEEccC--
Q 011787          115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI--S--PSEVSVDTIEGGNTVVKGKNIIIATG--  185 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~--~--~~~~~v~~~~g~~~~i~~d~lvlAtG--  185 (477)
                       ....+..+           +..++....++.++  ++..+ .+..+  +  ...+.|.+.+|  .++.||+||+|||  
T Consensus        93 -~~~~~~~e-----------i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G--~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A           93 -EKYATQPE-----------ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG--DEVSARFLVVAAGPL  158 (549)
T ss_dssp             -SSSCBHHH-----------HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSE
T ss_pred             -cCCCCHHH-----------HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC--CEEEeCEEEECcCCC
Confidence             11112222           22233344444454  33333 33333  2  23678888888  6799999999999  


Q ss_pred             CCCC--CCCCCcc-CCceEecchhh-hcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCC
Q 011787          186 SDVK--SLPGITI-DEKRIVSSTGA-LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSM  253 (477)
Q Consensus       186 ~~~~--~~~g~~~-~~~~~~~~~~~-~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~  253 (477)
                      +.|.  .+||.+. .+..+++.... ......+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+ +|..
T Consensus       159 s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~  231 (549)
T 4ap3_A          159 SNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAG  231 (549)
T ss_dssp             EECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC
T ss_pred             CCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCc
Confidence            6663  4566653 33445555433 234446899999999999999999999999999999999974 4433

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.93  E-value=1.5e-25  Score=229.37  Aligned_cols=308  Identities=19%  Similarity=0.259  Sum_probs=185.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHH--HhhhhhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA--MHSFASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~--~~~~~~~g~~~~~~~~  119 (477)
                      .++||+|||||++|+++|..|++.|.+|+|+|+++.+||+|. ..+.|...+......+...  ......+.+  .....
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~-~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~--~~~~~   91 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY-WNRYPGARCDIESIEYCYSFSEEVLQEWNW--TERYA   91 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCTTCBCSSCTTTSSCCSCHHHHHHCCC--CBSSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-ccCCCceeecccccccccccChhhhhccCc--ccccC
Confidence            468999999999999999999999999999999999999984 3445533221111100000  000001111  01111


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCC--eEEEEe-EEEE---ec-CCEEEEEecCCceEEEEecEEEEccCC--CCC-
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNK--VTYVKG-YGKF---IS-PSEVSVDTIEGGNTVVKGKNIIIATGS--DVK-  189 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~---~~-~~~~~v~~~~g~~~~i~~d~lvlAtG~--~~~-  189 (477)
                      +..++..+           +....++.+  .++..+ .+..   .+ ...+.|.+.+|  .++.||+||+|||.  .|. 
T Consensus        92 ~~~~i~~y-----------l~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~vV~AtG~~s~p~~  158 (542)
T 1w4x_A           92 SQPEILRY-----------INFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMASGQLSVPQL  158 (542)
T ss_dssp             BHHHHHHH-----------HHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSCCCCCC
T ss_pred             CHHHHHHH-----------HHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC--CEEEeCEEEECcCCCCCCCC
Confidence            12222211           122222222  222222 2222   22 24678888877  57999999999994  453 


Q ss_pred             -CCCCCc-cCCceEecchhh-hcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-CCCCC----HHHHHH-
Q 011787          190 -SLPGIT-IDEKRIVSSTGA-LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMD----GEIRKQ-  260 (477)
Q Consensus       190 -~~~g~~-~~~~~~~~~~~~-~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-~~~~~----~~~~~~-  260 (477)
                       .+||++ ..+..+++.... ......+|+|+|||+|.+|++++..+++.+.+|+++.|.+.+ +|..+    ++..+. 
T Consensus       159 p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~  238 (542)
T 1w4x_A          159 PNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADL  238 (542)
T ss_dssp             CCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHH
T ss_pred             CCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHH
Confidence             455654 334445555433 123445899999999999999999999999999999998866 23221    111100 


Q ss_pred             ----------------------------------------------------------------------HHHH------
Q 011787          261 ----------------------------------------------------------------------FQRS------  264 (477)
Q Consensus       261 ----------------------------------------------------------------------~~~~------  264 (477)
                                                                                            +.+.      
T Consensus       239 ~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (542)
T 1w4x_A          239 KKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVR  318 (542)
T ss_dssp             HTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcC
Confidence                                                                                  0011      


Q ss_pred             -----------------------------HHhcCcEEE--eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          265 -----------------------------LEKQKMKFM--LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       265 -----------------------------l~~~gv~~~--~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                                                   +.+.+|+++  .+..|.++.  ++++.  +.     + +++++|.||+|||
T Consensus       319 ~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~--~~gv~--~~-----d-~~~~~D~ii~atG  388 (542)
T 1w4x_A          319 DPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETIT--PRGVR--TS-----E-REYELDSLVLATG  388 (542)
T ss_dssp             SHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEEC--SSEEE--ES-----S-CEEECSEEEECCC
T ss_pred             CHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEc--CCeEE--eC-----C-eEEecCEEEEcCC
Confidence                                         111345555  255677773  34433  32     5 7899999999999


Q ss_pred             CCCCCCCCCccccceeecCCCCeecC-------CC--CC-CCCCCeEEe-cccCC--CCCchhHHHHHHHHHHHHHcC
Q 011787          314 RTPFTAGLGLDKIGVETDKMGRIPVN-------ER--FA-TNIPGVYAI-GDVIP--GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       314 ~~p~~~~l~~~~~gl~~~~~g~i~vd-------~~--l~-t~~~~vya~-GD~~~--~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +++++..  +...++. +.+|....|       .+  +. ...||+|++ |+.+.  .+.....|..|+++++++|..
T Consensus       389 ~~~~~~~--~~~~~i~-g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          389 FDALTGA--LFKIDIR-GVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             CCCTTHH--HHTSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccC--cCceeeE-CCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            9998654  3332222 223433332       12  12 478999998 99863  445668899999999999863

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.90  E-value=2e-23  Score=182.26  Aligned_cols=152  Identities=22%  Similarity=0.260  Sum_probs=132.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---------CC-----CHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------SM-----DGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------~~-----~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +++|||+|++|+++|..|++.|.+|+++++.+..++         .+     ++++.+.+.+.+++.|++++++ +|+++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            689999999999999999999999999999876552         23     4688889999999999999999 99999


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC-
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM-  360 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~-  360 (477)
                      +.+++.+.+++.     ++ ++++|.||+|+|..|+.    ++..|++++ +|.+.||+++||+.|+|||+|||+..+. 
T Consensus        82 ~~~~~~~~v~~~-----~g-~i~ad~vI~A~G~~~~~----~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~  150 (180)
T 2ywl_A           82 RDMGGVFEVETE-----EG-VEKAERLLLCTHKDPTL----PSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPG  150 (180)
T ss_dssp             EECSSSEEEECS-----SC-EEEEEEEEECCTTCCHH----HHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSC
T ss_pred             EEcCCEEEEEEC-----CC-EEEECEEEECCCCCCCc----cccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchh
Confidence            887766666543     34 89999999999999953    466778888 8899999999999999999999998876 


Q ss_pred             chhHHHHHHHHHHHHHcCC
Q 011787          361 LAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~  379 (477)
                      +++.|..||+.||.||.+.
T Consensus       151 ~~~~A~~~g~~aa~~i~~~  169 (180)
T 2ywl_A          151 HAIISAGDGAYVAVHLVSD  169 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHH
Confidence            8999999999999999853

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.85  E-value=5.2e-20  Score=186.07  Aligned_cols=216  Identities=19%  Similarity=0.255  Sum_probs=133.5

Q ss_pred             EEEEEecC---CceEEEEecEEEEccCCCCCCCCCCccCCceEecchhhhc------ccCCCCeeEEEcccHHHHHHHHH
Q 011787          162 EVSVDTIE---GGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSV  232 (477)
Q Consensus       162 ~~~v~~~~---g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~v~IiG~G~~g~e~a~~  232 (477)
                      .++|.+.+   |...++.+++||+|||..|..+...+..+..+++.+....      ....+|+|+|||+|.+|+|++..
T Consensus       185 ~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~  264 (501)
T 4b63_A          185 FFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHD  264 (501)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHH
T ss_pred             eEEEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHH
Confidence            36666543   4567899999999999877654444444555555543332      22458999999999999999999


Q ss_pred             HHHc--CCcEEEEEeCCCcCCCC---------CHHH-----------HHH--------------------HHHHH-H---
Q 011787          233 WARL--GSEVTVVEFAADIVPSM---------DGEI-----------RKQ--------------------FQRSL-E---  266 (477)
Q Consensus       233 l~~~--g~~Vtli~~~~~~~~~~---------~~~~-----------~~~--------------------~~~~l-~---  266 (477)
                      |++.  +.+|+++.|++.+.|..         .++.           ...                    +.+.+ +   
T Consensus       265 L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~  344 (501)
T 4b63_A          265 LQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRV  344 (501)
T ss_dssp             HHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcc
Confidence            9875  67999999988664321         1111           111                    11111 0   


Q ss_pred             ------hcCcEEEeCceEEEEEEcC--CeEEEEEee-------cCCCceEEEEcCEEEEeecCCCCCCCCCccc-cceee
Q 011787          267 ------KQKMKFMLKTKVVGVDLSG--DGVKLTLEP-------AAGGEKTILEADVVLVSAGRTPFTAGLGLDK-IGVET  330 (477)
Q Consensus       267 ------~~gv~~~~~~~v~~i~~~~--~~~~v~~~~-------~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~-~gl~~  330 (477)
                            .....+..+..+..+....  +.+.+....       ...++++++++|.||+|||++|+.....+.. ..+..
T Consensus       345 ~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~  424 (501)
T 4b63_A          345 KNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRP  424 (501)
T ss_dssp             HCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSS
T ss_pred             CCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCc
Confidence                  0123466666777765433  334443321       1234678999999999999999864211111 12555


Q ss_pred             cCCCCeecCCCCC--C------CCCCeEEecccC-----CCCCchhHHHHHHHHHHHHHcC
Q 011787          331 DKMGRIPVNERFA--T------NIPGVYAIGDVI-----PGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       331 ~~~g~i~vd~~l~--t------~~~~vya~GD~~-----~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +.+|.+.|+.+++  +      ..++||+.|-+-     +.|.+...|.+.|.++. .|+|
T Consensus       425 d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~~-~l~g  484 (501)
T 4b63_A          425 TGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQ-SIFG  484 (501)
T ss_dssp             TTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHHH-HHHH
T ss_pred             CcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHHH-HHhc
Confidence            6677888887654  2      246799998543     34667777888877653 4444

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.83  E-value=1e-21  Score=196.97  Aligned_cols=303  Identities=17%  Similarity=0.182  Sum_probs=169.3

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee----------eccCccCchhhhhhh----------------H
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC----------LNVGCIPSKALLHSS----------------H   98 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~----------~~~~~~p~~~l~~~~----------------~   98 (477)
                      ||+|||||+||++||..|++.|.+|+|+||. ..+|..          .+.++.|.+.+....                .
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999997 555542          222233322211110                0


Q ss_pred             HHHHHHhhhhhCCcccccc-----ccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEE-EEEecC
Q 011787           99 MYHEAMHSFASHGVKFSSV-----EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEV-SVDTIE  169 (477)
Q Consensus        99 ~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~-~v~~~~  169 (477)
                      .......++..+|+++...     ...+.......+.....+...+.+.+++.+++++.++ + .+  +.+.+ .+...+
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~  158 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETT
T ss_pred             HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEe
Confidence            0112234445566654320     0000000000000112233334444466789988775 5 44  33433 122222


Q ss_pred             CceEEEEecEEEEccCCCCCCCCCCccCCceEecchhh----------hcccCC--CCeeEEEcccHHHHHHHHHHHHcC
Q 011787          170 GGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGA----------LALNEV--PKKLVVIGAGYIGLEMGSVWARLG  237 (477)
Q Consensus       170 g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~--~~~v~IiG~G~~g~e~a~~l~~~g  237 (477)
                      . ..++.+|.||+|||+.+..++....  ....+.+..          .+....  ...++++|+|  +++++..++..|
T Consensus       159 ~-~g~~~a~~VVlAtGg~~~~~~~~~~--~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G  233 (472)
T 2e5v_A          159 R-GLVEDVDKLVLATGGYSYLYEYSST--QSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEG  233 (472)
T ss_dssp             T-EEECCCSEEEECCCCCGGGSSSBSS--CTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTT
T ss_pred             C-CCeEEeeeEEECCCCCcccCccccC--CCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCc
Confidence            1 1357799999999998754332110  011111111          111111  1234556776  888888888888


Q ss_pred             CcEEEEEeCCCcCCCCCHHH--------HHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEE-cCEE
Q 011787          238 SEVTVVEFAADIVPSMDGEI--------RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE-ADVV  308 (477)
Q Consensus       238 ~~Vtli~~~~~~~~~~~~~~--------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~-~D~v  308 (477)
                      ..+ +..+.+++++.++++.        ...+.+.+++.|. +++....  +   +.     +       ...++ .+.+
T Consensus       234 ~~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~~-----~-------~~~~~~~~~~  294 (472)
T 2e5v_A          234 AQI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---ED-----F-------ERKFPVVAKY  294 (472)
T ss_dssp             CEE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---TT-----H-------HHHCHHHHHH
T ss_pred             eEE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---HH-----H-------HHHhHHHHHH
Confidence            777 7778888887666543        5566666666553 2221110  0   00     0       01222 3667


Q ss_pred             EEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCC-CC----CchhHHHHHHHHHHHHH
Q 011787          309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-GP----MLAHKAEEDGVACVEFL  376 (477)
Q Consensus       309 i~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~-~~----~~~~~A~~~g~~aa~~i  376 (477)
                      +.+.|..|+ +.+  .-.+......|+|.||+++||++|||||+|||++ ..    .+..+|..+|.+.++.+
T Consensus       295 ~~~~G~dp~-~~i--~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a  364 (472)
T 2e5v_A          295 LARHGHNYK-VKI--PIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINL  364 (472)
T ss_dssp             HHHTTCCTT-SCE--ECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHG
T ss_pred             HHHhCcCcc-cce--EeehhhceeCCCeEECCCCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHH
Confidence            778899999 543  2222223346899999999999999999999986 33    56777777654444443

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.73  E-value=1.8e-18  Score=169.71  Aligned_cols=201  Identities=18%  Similarity=0.289  Sum_probs=115.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC--------cee--eccCccCchhhhhhhHH---------HHH
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTC--LNVGCIPSKALLHSSHM---------YHE  102 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G--------G~~--~~~~~~p~~~l~~~~~~---------~~~  102 (477)
                      .++||+|||||+||++||..|++.|.+|+|+|+++.+|        |.|  .+.++.|.+.+......         ...
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            46899999999999999999999999999999988774        455  34444443221111000         112


Q ss_pred             HHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--c----CCEEEEEecCCceEEE
Q 011787          103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--S----PSEVSVDTIEGGNTVV  175 (477)
Q Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~----~~~~~v~~~~g~~~~i  175 (477)
                      ....+...|+.+...  ++..+++..  ....+...+...+++.+++++.++ +..+  +    .+.+.|.+.++   ++
T Consensus        83 ~~~~~~~~Gi~~~~~--~~g~~~p~~--~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g---~i  155 (401)
T 2gqf_A           83 FISLVAEQGITYHEK--ELGQLFCDE--GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST---QW  155 (401)
T ss_dssp             HHHHHHHTTCCEEEC--STTEEEETT--CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE---EE
T ss_pred             HHHHHHhCCCceEEC--cCCEEccCC--CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC---EE
Confidence            233444555543210  000000000  012223334455566789988774 4333  3    34567776554   69


Q ss_pred             EecEEEEccCCCCCCCCC-------------------CccCCceEecchh-h---hcccCCCCeeEEEc-----------
Q 011787          176 KGKNIIIATGSDVKSLPG-------------------ITIDEKRIVSSTG-A---LALNEVPKKLVVIG-----------  221 (477)
Q Consensus       176 ~~d~lvlAtG~~~~~~~g-------------------~~~~~~~~~~~~~-~---~~~~~~~~~v~IiG-----------  221 (477)
                      ++|+||+|||+.+.+..+                   .+.......+.++ +   +.....+.++.|+|           
T Consensus       156 ~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~~l~t  235 (401)
T 2gqf_A          156 QCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFT  235 (401)
T ss_dssp             EESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCEEEEEEEEC
T ss_pred             ECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeeeeEEEEcCCceEEeCEEEE
Confidence            999999999998732111                   0000011112222 2   12222355676669           


Q ss_pred             ----ccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCH
Q 011787          222 ----AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDG  255 (477)
Q Consensus       222 ----~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~  255 (477)
                          +|+++++++..+.+ |.++++     .++|.++.
T Consensus       236 ~~g~sG~~~l~~s~~~~~-~~~~~i-----~~~p~~~~  267 (401)
T 2gqf_A          236 HRGISGPAVLQISNYWQP-TESVEI-----DLLPNHNV  267 (401)
T ss_dssp             SSEEESHHHHHHTTTCCT-TCCEEE-----ESCSSSCH
T ss_pred             CCCccHHHHHHHHHHHhc-CCEEEE-----ECCCCCCH
Confidence                99999999988865 666775     36676664

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.61  E-value=7.3e-17  Score=160.62  Aligned_cols=97  Identities=21%  Similarity=0.204  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec--------CCCCCCCCCccc
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG--------RTPFTAGLGLDK  325 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G--------~~p~~~~l~~~~  325 (477)
                      +..+...+...+++.| +++++++|++|+.+++++.+++.     +++++.+|.||+|+|        +.|+.+....+.
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~-----~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~  276 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVK-----DGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSV  276 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEET-----TSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHH
Confidence            4445566666667778 99999999999988888877764     455799999999999        888876432222


Q ss_pred             cceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          326 IGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       326 ~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      .+... ....++|+..++|+.+++|+.||+..
T Consensus       277 ~~~~~-~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          277 IEEGH-GGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             HHHCC-CCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             HHhCC-CcceEEEEEEECCCCcCceEcCCCCE
Confidence            22221 22358899999999999999999853

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.58  E-value=5.3e-15  Score=134.01  Aligned_cols=157  Identities=19%  Similarity=0.259  Sum_probs=110.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-----------------CCCC-------CHHHHHHHHHHHHhc-C
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------------VPSM-------DGEIRKQFQRSLEKQ-K  269 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-----------------~~~~-------~~~~~~~~~~~l~~~-g  269 (477)
                      .+|+|||+|++|+++|..|++.|.+|+++++....                 ...+       ...+.+.+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            46999999999999999999999999999986211                 0001       125667788888886 9


Q ss_pred             cEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCC---------------------Cccccc
Q 011787          270 MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGL---------------------GLDKIG  327 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l---------------------~~~~~g  327 (477)
                      ++++ +++|+++..+++++. +.+.     ++.++++|.||+|+|..++....                     .+.+.|
T Consensus        84 v~i~-~~~v~~i~~~~~~v~~v~~~-----~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g  157 (232)
T 2cul_A           84 LHLF-QATATGLLLEGNRVVGVRTW-----EGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLG  157 (232)
T ss_dssp             EEEE-ECCEEEEEEETTEEEEEEET-----TSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTT
T ss_pred             cEEE-EeEEEEEEEeCCEEEEEEEC-----CCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCC
Confidence            9998 579999987777653 4443     44589999999999996553210                     011222


Q ss_pred             eeecCCC--------C---------eecC---C-CC-CCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          328 VETDKMG--------R---------IPVN---E-RF-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       328 l~~~~~g--------~---------i~vd---~-~l-~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      +.++...        .         +..+   . .+ .|++|+|||+|||+ .......|+.||+.+|.+|..
T Consensus       158 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          158 FRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             CCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCccHHHHHHHHHHHHHHHHh
Confidence            2222110        0         0000   0 11 27999999999999 777888899999999999964

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.58  E-value=1.8e-14  Score=146.55  Aligned_cols=167  Identities=19%  Similarity=0.299  Sum_probs=99.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHHhh-------hhhCCcc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMHS-------FASHGVK  113 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~-------~~~~g~~  113 (477)
                      .++||+|||||+||++||..|++.|.+|+|||++. .+|    ..+|.|+................       ....++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG----~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG----QMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQ  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT----CCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc----cccccccccchhhHHHHHHHHHhccHHHHHhhhcccc
Confidence            46999999999999999999999999999999964 344    23566654322222222211100       0001111


Q ss_pred             cccc-------------ccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEe--cCCEE-EEEecCCceEEEE
Q 011787          114 FSSV-------------EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVK  176 (477)
Q Consensus       114 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~-~v~~~~g~~~~i~  176 (477)
                      +...             ..+-           ..+...+...+++ .+++++.+.+..+  +.+.+ .|.+.+|  ..+.
T Consensus       103 f~~l~~~kgpav~~~r~~~Dr-----------~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG--~~I~  169 (651)
T 3ces_A          103 FRILNASKGPAVRATRAQADR-----------VLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMG--LKFR  169 (651)
T ss_dssp             EEEESTTSCGGGCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTS--EEEE
T ss_pred             hhhhhcccCcccccchhhCCH-----------HHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCC--CEEE
Confidence            1000             0111           1123334455555 6899988877776  34443 5677777  6899


Q ss_pred             ecEEEEccCCCCCC--CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEE
Q 011787          177 GKNIIIATGSDVKS--LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE  244 (477)
Q Consensus       177 ~d~lvlAtG~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~  244 (477)
                      +|.||+|||+.+..  ++|...     +          .+.+   +| +.++++++..|.+.|.+|+.+.
T Consensus       170 Ad~VVLATGt~s~~~~i~G~~~-----~----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          170 AKAVVLTVGTFLDGKIHIGLDN-----Y----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             EEEEEECCSTTTCCEEECC--------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             CCEEEEcCCCCccCccccCccc-----C----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            99999999998743  333221     0          0223   56 7889999999999999998874

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.45  E-value=4.8e-13  Score=135.57  Aligned_cols=174  Identities=23%  Similarity=0.328  Sum_probs=100.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHHh-------hhhhCCcc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASHGVK  113 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-------~~~~~g~~  113 (477)
                      .++||+|||||+||++||..|++.|.+|+|||++. .+|+    .+|.|+...............       .....++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~----~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~  101 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ----MSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQ  101 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC----cCccccccccchHHHHHHHHHhhhHHHHHhhhcccc
Confidence            35899999999999999999999999999999964 4553    345554322211111111100       00011111


Q ss_pred             ccc------cccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEe--cCCEE-EEEecCCceEEEEecEEEEc
Q 011787          114 FSS------VEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVKGKNIIIA  183 (477)
Q Consensus       114 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~-~v~~~~g~~~~i~~d~lvlA  183 (477)
                      +..      ............    ..+...+...+++ .+++++.+.+..+  +.+.+ .|.+.+|  ..+.+|.||+|
T Consensus       102 f~~l~~~kGpav~~~r~~~Dr----~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG--~~i~AdaVVLA  175 (637)
T 2zxi_A          102 FKMLNTRKGKAVQSPRAQADK----KRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLG--VEYKTKAVVVT  175 (637)
T ss_dssp             EEEESTTSCGGGCEEEEEECH----HHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTS--CEEECSEEEEC
T ss_pred             eeecccccCccccchhhhCCH----HHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCC--cEEEeCEEEEc
Confidence            110      000000000000    1223334455555 5899988777764  34443 4777777  68999999999


Q ss_pred             cCCCCCC--CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEE
Q 011787          184 TGSDVKS--LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE  244 (477)
Q Consensus       184 tG~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~  244 (477)
                      ||+.+..  ++|..     .+.          +.+   +| +.++++++..|.+.|.+++.+.
T Consensus       176 TG~~s~~~~~~G~~-----~~~----------~Gr---~G-~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          176 TGTFLNGVIYIGDK-----MIP----------GGR---LG-EPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             CTTCBTCEEEETTE-----EEE----------CSB---TT-BCCBCTHHHHHHHTTCCCEEEE
T ss_pred             cCCCccCceeccce-----ecC----------CCC---CC-chhHHHHHHHHHhcCCceEEec
Confidence            9998743  23321     000          112   23 5577899999999998876654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.39  E-value=4.1e-12  Score=128.33  Aligned_cols=142  Identities=15%  Similarity=0.209  Sum_probs=79.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC-------ceeeccCccCchh-------------------hhh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG-------GTCLNVGCIPSKA-------------------LLH   95 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G-------G~~~~~~~~p~~~-------------------l~~   95 (477)
                      ..+||+|||||++|++||+.|++.|++|+|+|+...++       |.|....|.|...                   +..
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~  185 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD  185 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence            45899999999999999999999999999999976552       1121111111000                   000


Q ss_pred             hhHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCE-EEEEecCCc
Q 011787           96 SSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEGG  171 (477)
Q Consensus        96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~-~~v~~~~g~  171 (477)
                      ...........+..+|.+..........+.   ......+...+.+.+++.+++++.++ +..+  +.+. ..|.+.+| 
T Consensus       186 ~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G---~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G-  261 (549)
T 3nlc_A          186 PNFYGRKVITEFVEAGAPEEILYVSKPHIG---TFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG-  261 (549)
T ss_dssp             TTCHHHHHHHHHHHTTCCGGGGTBSSCCCC---HHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS-
T ss_pred             ccccHHHHHHHHHHcCCCceEeeccccccc---cchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC-
Confidence            001112223333444443211000000000   00112233444555666799988773 4443  3333 44777777 


Q ss_pred             eEEEEecEEEEccCCCC
Q 011787          172 NTVVKGKNIIIATGSDV  188 (477)
Q Consensus       172 ~~~i~~d~lvlAtG~~~  188 (477)
                       .++.+|+||+|+|..+
T Consensus       262 -~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          262 -EEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             -CEEECSCEEECCCTTC
T ss_pred             -CEEECCEEEECCCCCh
Confidence             6799999999999876

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.33  E-value=4.4e-12  Score=128.94  Aligned_cols=39  Identities=26%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      ..+||+|||||+||++||+.|++ |.+|+|+||....+|.
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            35899999999999999999999 9999999998776543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.33  E-value=5.7e-12  Score=117.64  Aligned_cols=165  Identities=17%  Similarity=0.218  Sum_probs=112.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc-CCcEEEEEeCCCcCCC--------------------------------------CCH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVPS--------------------------------------MDG  255 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~~~~--------------------------------------~~~  255 (477)
                      .+|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 9999999988754210                                      123


Q ss_pred             HHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeec---------CCCceEEEEcCEEEEeecCCCCCCCCCcc
Q 011787          256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPA---------AGGEKTILEADVVLVSAGRTPFTAGLGLD  324 (477)
Q Consensus       256 ~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~---------~~~~~~~i~~D~vi~a~G~~p~~~~l~~~  324 (477)
                      ++...+.+.+.+ .|++++++++|+++..+++++. +.+...         ..++...+++|.||+|+|..++...+..+
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~  199 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK  199 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence            444455666655 6999999999999987776653 444310         11234689999999999988876432111


Q ss_pred             cc---c--eeecCCCCeecCC-------CCCCCCCCeEEecccCC----CC---CchhHHHHHHHHHHHHHcCC
Q 011787          325 KI---G--VETDKMGRIPVNE-------RFATNIPGVYAIGDVIP----GP---MLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       325 ~~---g--l~~~~~g~i~vd~-------~l~t~~~~vya~GD~~~----~~---~~~~~A~~~g~~aa~~i~~~  379 (477)
                      ..   +  +.+....++.+|.       ..+++.|++|++||++.    .|   +.+..+..+|+.+|.+|..+
T Consensus       200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~  273 (284)
T 1rp0_A          200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKA  273 (284)
T ss_dssp             HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHH
Confidence            10   1  1111112233332       33567899999999872    22   24667889999999999753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.28  E-value=7.6e-12  Score=128.72  Aligned_cols=36  Identities=36%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~   78 (477)
                      ++||||||||+||++||+.|++.|  .+|+||||....
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~   42 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            479999999999999999999999  999999997644

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.23  E-value=5.1e-11  Score=117.00  Aligned_cols=57  Identities=16%  Similarity=0.345  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      .++.+.+.+.+++.|++++++++|+++..+++++.+.+.     ++ ++.+|.||+|+|..+.
T Consensus       132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-----~g-~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTS-----AG-TVDAASLVVASGGKSI  188 (417)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET-----TE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC-----Cc-EEEeeEEEECCCCccC
Confidence            456677888888899999999999999888887777653     44 8999999999998763

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.17  E-value=1.2e-11  Score=125.96  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=101.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC-CCCceeeccCccCchhhhhhhHHHHHHHh-------hhhhCCc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASHGV  112 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~l~~~~~~~~~~~~-------~~~~~g~  112 (477)
                      ..++||+|||||+||++||..|++.|.+|+|+|+.. .+|+    .+|.|+...............       .....++
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~----~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi   94 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR----MSCNPAIGGVAKGQITREIDALGGEMGKAIDATGI   94 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC----CccccchhhhhHHHHHHHHHhcccHHHHHHHhcCC
Confidence            346999999999999999999999999999999964 4554    345554322221122211110       0011111


Q ss_pred             ccccc-------------ccChHHHHHHHHHHHHHHHHHHHHHhhh-CCeEEEEeEEEEe--cCCEEE-EEecCCceEEE
Q 011787          113 KFSSV-------------EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEVS-VDTIEGGNTVV  175 (477)
Q Consensus       113 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~~-v~~~~g~~~~i  175 (477)
                      .+...             ..+-.           .+...+.+.+++ .+++++.+.+..+  +.+.+. |.+.+|  ..+
T Consensus        95 ~f~~l~~~kgpav~~~r~~~Dr~-----------~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G--~~i  161 (641)
T 3cp8_A           95 QFRMLNRSKGPAMHSPRAQADKT-----------QYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSG--RAI  161 (641)
T ss_dssp             EEEEECSSSCTTTCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CEE
T ss_pred             chhhcccccCccccchhhhcCHH-----------HHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCC--cEE
Confidence            11100             01111           122333445555 4899988877664  355555 777777  689


Q ss_pred             EecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEE
Q 011787          176 KGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE  244 (477)
Q Consensus       176 ~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~  244 (477)
                      .+|.||+|||+.+......+   ..-+.          +.+++  | +.++++++..|.+.|.+|..+.
T Consensus       162 ~Ad~VVLATG~~s~~~i~~G---~~~~~----------~g~~v--G-~~~a~~la~~L~~~G~kv~~l~  214 (641)
T 3cp8_A          162 QAKAAILACGTFLNGLIHIG---MDHFP----------GGRST--A-EPPVEGLTESLASLGFSFGRLK  214 (641)
T ss_dssp             EEEEEEECCTTCBTCEEEET---TEEEE----------CSSST--T-SCCBCSHHHHHHHTTCCEEEEE
T ss_pred             EeCEEEECcCCCCCccceee---eeeec----------ccccc--C-CchhhhhHHHHHhCCceEEeec
Confidence            99999999999875322111   00000          11111  3 5677899999999999887653

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.16  E-value=1.6e-10  Score=119.64  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC------CCeEEEEecCCCCCc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGG   80 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~------g~~V~lie~~~~~GG   80 (477)
                      ++||||||||+||++||++|++.      |.+|+||||....++
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s   65 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS   65 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence            58999999999999999999997      999999999654433

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.13  E-value=8.9e-10  Score=106.66  Aligned_cols=60  Identities=18%  Similarity=0.340  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+...+.+.+++.|++++++++|+++..++++ +.+.+.   +++..++.+|.||+|+|...
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG---GAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEEC---TTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEEC---CCceeEEEeCEEEECCCcch
Confidence            3567788888899999999999999999887665 666553   23336899999999999764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.08  E-value=4.9e-10  Score=101.12  Aligned_cols=119  Identities=18%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhh-hCCccccccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~  121 (477)
                      ++||+|||||++|+.+|..|++.|.+|+|||+.....|.+    |.|...-.........    +. ..+       .+ 
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~----~~~~~~~~~~~~~~~~----~~d~~g-------~~-   66 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP----FLPPKPPFPPGSLLER----AYDPKD-------ER-   66 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC----SSCCCSCCCTTCHHHH----HCCTTC-------CC-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcc----cCccccccchhhHHhh----hccCCC-------CC-
Confidence            5899999999999999999999999999999974333322    2221100001111111    10 000       00 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEec--CCE-EEEEecCCceEEEEecEEEEccCCCCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFIS--PSE-VSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~--~~~-~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ...+...+.+.+++. +++++...+..+.  .+. ..|.+.+|  .++.+|+||+|+|....
T Consensus        67 ----------~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g--~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           67 ----------VWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             ----------HHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCSS
T ss_pred             ----------HHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCC--CEEECCEEEECCCCChh
Confidence                      112334445556665 8998876665543  344 35666777  57999999999998654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.03  E-value=1.2e-09  Score=94.31  Aligned_cols=108  Identities=28%  Similarity=0.319  Sum_probs=70.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ++|++|||||++|+.+|..|++.|.+|+|+|+.+..-..+......                     .+++   ..... 
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~~~---~~~~~-   55 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNY---------------------PGLL---DEPSG-   55 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCS---------------------TTCT---TCCCH-
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhcc---------------------CCCc---CCCCH-
Confidence            3799999999999999999999999999999965221000000000                     0000   00111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEec--CCEEEEEecCCceEEEEecEEEEccCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                                ..+...+.+.+++.+++++.+++..++  .+.+.+.+.+|   ++.+|.||+|+|..|
T Consensus        56 ----------~~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g---~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           56 ----------EELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG---VEKAERLLLCTHKDP  110 (180)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC---EEEEEEEEECCTTCC
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC---EEEECEEEECCCCCC
Confidence                      122333445666778998887554443  34466777666   789999999999987

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.02  E-value=8.9e-09  Score=100.24  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+...+.+.+++.|++++++++|++++.+++++. +++.     ++ ++.+|.||+|+|...
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~-----~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTN-----KG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEET-----TE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEEC-----Cc-EEECCEEEECcchhH
Confidence            346677788888899999999999999988777766 5543     34 799999999999764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.00  E-value=3.2e-09  Score=103.69  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+...+.+..++.|++++++++++.+..+++.+...... .+++..++.+|+||.|.|..+
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIR-HNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEE-ETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeec-ccccceEEEEeEEEeCCcccc
Confidence            445566677778899999999999998887776533321 234556799999999999654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.97  E-value=5.5e-09  Score=97.31  Aligned_cols=132  Identities=22%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccc---
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV---  117 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~---  117 (477)
                      .++||+|||||++|+++|..|++. |.+|+|+|+.+.+||.+...++.....+....     ....+..+|+++...   
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~-----~~~~l~~~G~~~~~~~~~  112 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKP-----AHLFLDEIGVAYDEQDTY  112 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETT-----THHHHHHHTCCCEECSSE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcH-----HHHHHHHcCCCcccCCCE
Confidence            358999999999999999999997 99999999988887754443333222111111     011223344443210   


Q ss_pred             c--cChHHHHHHHHHHHHHHHHHHHHHh-hhCCeEEEEeE-EEEe--cCCEE-EEEec---------C---CceEEEEec
Q 011787          118 E--VDLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKGY-GKFI--SPSEV-SVDTI---------E---GGNTVVKGK  178 (477)
Q Consensus       118 ~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~--~~~~~-~v~~~---------~---g~~~~i~~d  178 (477)
                      .  .+..           .+...+.+.+ +..+++++.+. +..+  +.+.+ .+...         +   ++...+++|
T Consensus       113 ~~~~~~~-----------~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad  181 (284)
T 1rp0_A          113 VVVKHAA-----------LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAK  181 (284)
T ss_dssp             EEESCHH-----------HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEE
T ss_pred             EEecCHH-----------HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECC
Confidence            0  0111           1112222333 34689998873 4444  33433 23221         1   234679999


Q ss_pred             EEEEccCCCCC
Q 011787          179 NIIIATGSDVK  189 (477)
Q Consensus       179 ~lvlAtG~~~~  189 (477)
                      .||+|+|..+.
T Consensus       182 ~VV~AtG~~s~  192 (284)
T 1rp0_A          182 IVVSSCGHDGP  192 (284)
T ss_dssp             EEEECCCSSST
T ss_pred             EEEECCCCchH
Confidence            99999998663

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.96  E-value=1.6e-09  Score=111.23  Aligned_cols=41  Identities=44%  Similarity=0.656  Sum_probs=37.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      .+||+|||||+||++||..|++.|.+|+|+||.+.+||...
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~  166 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK  166 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence            58999999999999999999999999999999888887543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.94  E-value=1.5e-08  Score=106.29  Aligned_cols=59  Identities=12%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++.+++.     ++.++.+|.||+|+|....
T Consensus       416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~-----~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFA-----GDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEEC-----CCCEEECCEEEECCCcchh
Confidence            3567778888888999999999999999988888766653     4457999999999997643

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.93  E-value=1.3e-08  Score=100.46  Aligned_cols=60  Identities=18%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .+...+.+.+++.|++++.+++|++++.++++..+.+.. .++...++.+|.||.|+|..+
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~-~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIED-INGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEE-TTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEc-CCCCEEEEEcCEEEECCCCch
Confidence            556667777778899999999999998887776665543 223334799999999999765

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.93  E-value=1.1e-08  Score=103.51  Aligned_cols=55  Identities=13%  Similarity=0.242  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      .+.+.+.+.+++.|++|+++++|++|..+++++. |++.     +++++.+|.||.+++..
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~-----~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLE-----DGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TSCEEECSCEEECCC--
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEec-----CCcEEEcCEEEECCCHH
Confidence            5677788889999999999999999999888876 6665     67899999999987654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.92  E-value=2.8e-08  Score=104.25  Aligned_cols=58  Identities=9%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~-~i~~D~vi~a~G~~p  316 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++.+.+.     ++. ++.+|.||+|+|...
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~-----~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFG-----QSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC------CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeC-----CCcEEEECCEEEECCCcch
Confidence            3567778888888999999999999999988887766654     344 799999999999764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.92  E-value=5.1e-08  Score=95.07  Aligned_cols=71  Identities=21%  Similarity=0.246  Sum_probs=52.4

Q ss_pred             cEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          239 EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       239 ~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      ...++...+..+.  +..+...+.+.+++.|++++++++|++++.+++++.+++.     ++ ++.+|.||+|+|..++
T Consensus       136 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          136 YNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETA-----NG-SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             EEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEET-----TE-EEEEEEEEECCGGGHH
T ss_pred             ceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeC-----CC-EEEeCEEEEecCccHH
Confidence            4555554433221  3567788888899999999999999999887777666542     33 7999999999997643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.91  E-value=6.6e-09  Score=103.38  Aligned_cols=137  Identities=25%  Similarity=0.343  Sum_probs=79.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce--------eeccCc-cCchhh---------hhhh---HHHH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT--------CLNVGC-IPSKAL---------LHSS---HMYH  101 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~--------~~~~~~-~p~~~l---------~~~~---~~~~  101 (477)
                      ++||+|||||+||+++|..|++.|.+|+|+|+.+.+|+.        |..... .+...+         ....   ....
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            489999999999999999999999999999998877643        211110 000000         0000   0001


Q ss_pred             HHHhhhhhCCcccccc----ccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCE-EEEEecCCceE
Q 011787          102 EAMHSFASHGVKFSSV----EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEGGNT  173 (477)
Q Consensus       102 ~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~-~~v~~~~g~~~  173 (477)
                      ....++...|+.+...    .++...       ....+...+...+++.+++++.++ +..+  +.+. +.|.+.+|  .
T Consensus       106 ~~~~~~~~~G~~~~~~~~g~~~p~~~-------~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G--~  176 (447)
T 2i0z_A          106 DIITFFENLGVKLKEEDHGRMFPVSN-------KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--E  176 (447)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTC-------CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--C
T ss_pred             HHHHHHHhcCCceEEeeCCEEECCCC-------CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCC--C
Confidence            1223334444432110    000000       012233344455566789988763 4433  3444 66777777  4


Q ss_pred             EEEecEEEEccCCCC
Q 011787          174 VVKGKNIIIATGSDV  188 (477)
Q Consensus       174 ~i~~d~lvlAtG~~~  188 (477)
                      .+.+|.||+|||...
T Consensus       177 ~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          177 VLETNHVVIAVGGKS  191 (447)
T ss_dssp             EEECSCEEECCCCSS
T ss_pred             EEECCEEEECCCCCc
Confidence            699999999999876

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.90  E-value=9.6e-09  Score=102.02  Aligned_cols=57  Identities=21%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCc---eEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKT---KVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~---~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+++.|+++++++   +|+++..+++++. +++.     +++++.+|.||+|+|...
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~-----~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTA-----DGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEET-----TTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEEC-----CCCEEECCEEEECCCCCh
Confidence            4677788888899999999999   9999988877776 6654     556899999999999654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.89  E-value=4.6e-08  Score=95.75  Aligned_cols=55  Identities=15%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ..+...+.+.+++.|++++++++|++++.+++++.+...     + .++.+|.||+|+|..
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~-----~-g~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTD-----R-GTYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEES-----S-CEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEEC-----C-CEEEcCEEEEcCCcC
Confidence            356667778888899999999999999887777665432     2 379999999999965

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.89  E-value=2.3e-09  Score=109.91  Aligned_cols=41  Identities=27%  Similarity=0.556  Sum_probs=37.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      .++||+|||||+||++||+.|++.|.+|+||||.+.+||..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s  160 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS  160 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            45899999999999999999999999999999988887643

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.88  E-value=6.2e-09  Score=102.36  Aligned_cols=56  Identities=13%  Similarity=0.271  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+.+.+++  ++++++++|++++.+++++.+++.     +++++.+|+||.|.|.....
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~vV~AdG~~S~v  183 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFT-----DGSSASGDLLIAADGSHSAL  183 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCTTCSS
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEc-----CCCEEeeCEEEECCCcChHH
Confidence            556666666665  889999999999998888888775     55689999999999987654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.86  E-value=7.7e-09  Score=100.63  Aligned_cols=136  Identities=17%  Similarity=0.117  Sum_probs=74.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCc-hhhhhhhHHHHHHHhhhhhCCcccccc---
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS-KALLHSSHMYHEAMHSFASHGVKFSSV---  117 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~-~~l~~~~~~~~~~~~~~~~~g~~~~~~---  117 (477)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+....++........|. ..++.........    ...+......   
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~----~~~~~~~~~~~~~   85 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV----LQGSHTPPTYETW   85 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHH----HTTCBCCSCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHH----HhhCCCccceEEE
Confidence            4589999999999999999999999999999997766431111000110 0111100011111    1111100000   


Q ss_pred             -------ccChH---HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccCC
Q 011787          118 -------EVDLP---AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGS  186 (477)
Q Consensus       118 -------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~  186 (477)
                             .++..   ...-.    ...+...+.+.+.+.+++++.++ +..++.+. .|.+.+|  .++.+|.||.|+|.
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~----r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g--~~~~ad~vV~AdG~  158 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMT----RSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTG--EVLEADLIVGADGV  158 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEE----HHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTS--CEEECSEEEECCCT
T ss_pred             eCCceeeeccCCCCceEEEC----HHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCC--CEEEcCEEEECCCc
Confidence                   00000   00000    01223334445555688888764 44444333 6777777  57999999999998


Q ss_pred             CC
Q 011787          187 DV  188 (477)
Q Consensus       187 ~~  188 (477)
                      ..
T Consensus       159 ~s  160 (379)
T 3alj_A          159 GS  160 (379)
T ss_dssp             TC
T ss_pred             cH
Confidence            76

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.86  E-value=6.9e-09  Score=104.49  Aligned_cols=125  Identities=21%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc-----c-
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK-----F-  114 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~-----~-  114 (477)
                      ...+||+|||||++|+++|..|++.|.+|+|||+.+.+|+. ......|..            ...+...|+.     + 
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~-~~~~~~~~~------------~~~l~~~g~~~~~~~~~  156 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH-NVLHLWPFT------------IHDLRALGAKKFYGRFC  156 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC-CEEECCHHH------------HHHHHTTTHHHHCTTTT
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC-CcccCChhH------------HHHHHHcCCcccccccc
Confidence            34689999999999999999999999999999998777653 211222210            0111111210     0 


Q ss_pred             -cc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC-----CEEEEEe--c-CCceEEEEecEEEEc
Q 011787          115 -SS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP-----SEVSVDT--I-EGGNTVVKGKNIIIA  183 (477)
Q Consensus       115 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~-----~~~~v~~--~-~g~~~~i~~d~lvlA  183 (477)
                       .. ..++.           ..+...+.+.+++.++++..+ .+..+..     ..+.|.+  . +|+..++.+|+||+|
T Consensus       157 ~~~~~~~~~-----------~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A  225 (497)
T 2bry_A          157 TGTLDHISI-----------RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISA  225 (497)
T ss_dssp             CTTCCEEEH-----------HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEEC
T ss_pred             ccccccCCH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEEC
Confidence             00 00111           122333445556678998887 4544432     2345554  3 442346899999999


Q ss_pred             cCCCCC
Q 011787          184 TGSDVK  189 (477)
Q Consensus       184 tG~~~~  189 (477)
                      +|..+.
T Consensus       226 ~G~~S~  231 (497)
T 2bry_A          226 AGGKFV  231 (497)
T ss_dssp             CCTTCC
T ss_pred             CCCCcc
Confidence            998874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.85  E-value=6.6e-08  Score=93.65  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+++.|++++++++|++++.+++++.+++.     ++ ++.+|.||+|+|...
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~-----~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETA-----DG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES-----SC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEEC-----CC-eEEcCEEEEcCCccH
Confidence            366777888888899999999999999887777666543     33 599999999999654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.85  E-value=7.5e-08  Score=94.42  Aligned_cols=56  Identities=14%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+++.|++++++++|+++..+++++ .+++.     ++ ++.+|.||+|+|...
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-----~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTT-----RG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEET-----TC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeC-----Cc-eEECCEEEECCchhH
Confidence            3677778888899999999999999998776654 34432     33 799999999999765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.84  E-value=6.1e-09  Score=98.14  Aligned_cols=49  Identities=35%  Similarity=0.449  Sum_probs=41.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCch
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSK   91 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~   91 (477)
                      .+||+|||||++|+++|+.|++.  |++|+|+|+...+||.+...++.+..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~  129 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSA  129 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchh
Confidence            58999999999999999999997  99999999988888665555554443

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.83  E-value=5.2e-08  Score=94.76  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++.+.+.     ++ ++.+|.||+|+|....
T Consensus       163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTP-----SG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEET-----TE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcC-----Cc-eEEcCEEEECCChhHH
Confidence            3567788888889999999999999999877777655542     34 7999999999997643

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.82  E-value=2.6e-08  Score=100.79  Aligned_cols=42  Identities=38%  Similarity=0.532  Sum_probs=38.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      .++||||||||+||++||+.|++.|++|+||||....||...
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            468999999999999999999999999999999988887543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.82  E-value=2e-08  Score=102.88  Aligned_cols=38  Identities=34%  Similarity=0.564  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      |..+||+|||||+||+++|..|++.|.+|+|||+....
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP   58 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCC
Confidence            44699999999999999999999999999999997543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.81  E-value=6e-10  Score=112.26  Aligned_cols=107  Identities=22%  Similarity=0.292  Sum_probs=81.8

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----CC----------------------------HHHHH
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD----------------------------GEIRK  259 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----~~----------------------------~~~~~  259 (477)
                      ...+|+|||||+.|+.+|..|++.|.+|+++++.+.+...     .+                            .++.+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~  170 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL  170 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence            3678999999999999999999999999999988754210     11                            45566


Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .+.+.+++.|++++++++|+++..+   ++.+.+++....++...++.+|.||.|+|..+...
T Consensus       171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            7778888889999999999999864   34556665321012125689999999999998764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.80  E-value=2.3e-08  Score=101.26  Aligned_cols=61  Identities=13%  Similarity=0.245  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      .+.+.+.+.+++.|++++.+++|+++..+++.+. +.+.. .++...++.+|.||.|+|....
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~-~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRN-TEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEEC-SSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEe-CCCCEEEEEcCEEEECCCcchH
Confidence            5566777778889999999999999998877654 55442 2233358999999999997653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.77  E-value=1.5e-07  Score=91.40  Aligned_cols=56  Identities=9%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+++.|++++++++|+++..+++++.+++.     ++ ++.+|.||+|+|...
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~-----~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCD-----AG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECS-----SE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeC-----CC-EEEcCEEEECCChhH
Confidence            467777888888999999999999999988877666543     34 899999999999643

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.75  E-value=6.9e-10  Score=114.52  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=46.6

Q ss_pred             HhcCcEEEeCceEEEEEEcCC--eE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCcccccee
Q 011787          266 EKQKMKFMLKTKVVGVDLSGD--GV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE  329 (477)
Q Consensus       266 ~~~gv~~~~~~~v~~i~~~~~--~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~  329 (477)
                      ++.|+++++++.|++|..+++  ++ .+++.+..++...++.+|.||+|+|..|+...+.+...|..
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~  337 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL  337 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence            445899999999999987643  33 36665544556678999999999999998876444444433

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.75  E-value=1.3e-07  Score=93.30  Aligned_cols=56  Identities=14%  Similarity=0.217  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+.+.+.+.+++.|++++++++|++|..+++++. +++      +++++.+|.||+|++...
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~------~g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA------DDRIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE------TTEEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE------CCEEEECCEEEECCCHHH
Confidence            35667778888999999999999999998887765 443      356899999999998543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.74  E-value=1.7e-08  Score=103.43  Aligned_cols=41  Identities=39%  Similarity=0.614  Sum_probs=37.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ..+||+|||+|+||+++|..|++.|.+|+|+|+.+.+||..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~  165 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT  165 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcch
Confidence            35799999999999999999999999999999988887654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.74  E-value=1.3e-07  Score=101.46  Aligned_cols=56  Identities=21%  Similarity=0.327  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++. +.+.     ++ ++.+|.||+|+|..
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~-----~G-~i~Ad~VV~AaG~~  206 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTA-----DG-VIPADIVVSCAGFW  206 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TE-EEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEEC-----Cc-EEECCEEEECCccc
Confidence            346778888889999999999999999988777654 4432     33 79999999999954

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.74  E-value=1.5e-07  Score=92.48  Aligned_cols=62  Identities=18%  Similarity=0.156  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHh-cC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 EIRKQFQRSLEK-QK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 ~~~~~~~~~l~~-~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+.+.+++ .| ++++++++|++++. ++++.+++.+..++...++.+|+||.|.|..+..
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~v  171 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSAV  171 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHH
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccchh
Confidence            455666666665 35 68999999999987 6677777753222333689999999999987654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.73  E-value=2.4e-07  Score=94.60  Aligned_cols=63  Identities=13%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++. +++.+..++++..+.+|.||.|+|...
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            356777778888889999999999999998877754 666654455567899999999999643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.71  E-value=9.4e-09  Score=95.14  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=38.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      +||+||||||||++||..|++.|++|+|+||.+.+||.+.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            7999999999999999999999999999999999999764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.68  E-value=6.5e-08  Score=99.25  Aligned_cols=62  Identities=11%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      ..+...+.+.+++.|+++++++.++++..+ ++++. +.+.+..++....+.++.||+|+|-..
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            456677778888889999999999999875 55443 444432334445799999999999643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.66  E-value=1.1e-07  Score=93.12  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ++||+|||||++|+++|..|++.|.+|+|+|+....
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            589999999999999999999999999999997654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.65  E-value=2.2e-07  Score=89.24  Aligned_cols=95  Identities=21%  Similarity=0.293  Sum_probs=78.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---------------------CCCC-----------HHHHHHHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------------PSMD-----------GEIRKQFQ  262 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---------------------~~~~-----------~~~~~~~~  262 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                     +.++           .++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            369999999999999999999999999999886531                     1110           57778888


Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +.+++.|++++++++|++++.+++.+. +++.     ++ ++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~-----~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARD-----GR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTEEEEEETT-----SC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeC-----CC-EEEeCEEEECCCCC
Confidence            888899999999999999998888766 6542     33 89999999999953

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.62  E-value=2.4e-08  Score=97.75  Aligned_cols=37  Identities=22%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      +..+||+|||||++|+++|..|++.|.+|+|+|+.+.
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3468999999999999999999999999999999765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.61  E-value=1.1e-07  Score=97.56  Aligned_cols=41  Identities=41%  Similarity=0.710  Sum_probs=36.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC------CCeEEEEecCCCCCceee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~------g~~V~lie~~~~~GG~~~   83 (477)
                      ++||+|||||+||+++|..|++.      |.+|+||||...+|+...
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~   81 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   81 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccc
Confidence            48999999999999999999998      999999999887776543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.61  E-value=8.7e-08  Score=96.50  Aligned_cols=41  Identities=22%  Similarity=0.387  Sum_probs=35.5

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      ++..++||+||||||+|+++|..|++.|.+|+|+||....+
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   47 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT   47 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34567899999999999999999999999999999976553

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.60  E-value=1.6e-07  Score=95.97  Aligned_cols=58  Identities=12%  Similarity=0.211  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          255 GEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       255 ~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      ..+.+.+.+.+++. |++++++ +|+++..++++  +.+++.     +++++.+|.||.|+|..+..
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~-----~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTA-----TGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEET-----TSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEEC-----CCCEEECCEEEECCCCchhh
Confidence            35777888888888 9999999 99999875544  345543     45689999999999987755

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.59  E-value=2.2e-07  Score=87.82  Aligned_cols=100  Identities=19%  Similarity=0.280  Sum_probs=79.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC--CCc--------CCCC----CHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADI--------VPSM----DGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~--~~~--------~~~~----~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.  ..+        .+.+    ..++.+.+.+.+++.|++++. .+|.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999986  111        1222    246777778888889999998 89999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ++.+++.+.+.+.     ++.++.+|.+|+|+|..|+...
T Consensus        95 i~~~~~~~~v~~~-----~g~~~~~d~lvlAtG~~~~~~~  129 (323)
T 3f8d_A           95 IENRGDEFVVKTK-----RKGEFKADSVILGIGVKRRKLG  129 (323)
T ss_dssp             EEEC--CEEEEES-----SSCEEEEEEEEECCCCEECCCC
T ss_pred             EEecCCEEEEEEC-----CCCEEEcCEEEECcCCCCccCC
Confidence            9887777777664     4568999999999999887643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.59  E-value=1.8e-07  Score=88.94  Aligned_cols=100  Identities=21%  Similarity=0.295  Sum_probs=81.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---------------CCC----CHHHHHHHHHHHHhcCcEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------PSM----DGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---------------~~~----~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.               +.+    ..++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            579999999999999999999999999999976432               111    2567777888888889999999


Q ss_pred             ceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecC---CCCCCC
Q 011787          276 TKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGR---TPFTAG  320 (477)
Q Consensus       276 ~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~---~p~~~~  320 (477)
                      ++|.+++..++ .+.+.+.     +++ +.+|.+|+|+|.   .|+...
T Consensus        88 ~~v~~i~~~~~~~~~v~~~-----~g~-~~~d~vVlAtG~~~~~p~~~~  130 (332)
T 3lzw_A           88 QAVESVEKQADGVFKLVTN-----EET-HYSKTVIITAGNGAFKPRKLE  130 (332)
T ss_dssp             CCEEEEEECTTSCEEEEES-----SEE-EEEEEEEECCTTSCCEECCCC
T ss_pred             CEEEEEEECCCCcEEEEEC-----CCE-EEeCEEEECCCCCcCCCCCCC
Confidence            99999988766 5666654     343 999999999999   776543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.58  E-value=4.5e-07  Score=92.36  Aligned_cols=39  Identities=36%  Similarity=0.623  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      +.++||+|||||++|+++|+.|++.|.+|+||||....+
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            346899999999999999999999999999999976553

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.57  E-value=1.9e-07  Score=89.31  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCeEEEEecCCCCCceee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~---~g~~V~lie~~~~~GG~~~   83 (477)
                      +||+|||||++|+++|+.|++   .|++|+|+||+..+||.+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~   44 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMT   44 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGC
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCcccee
Confidence            699999999999999999999   8999999999988888654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.56  E-value=4e-08  Score=97.92  Aligned_cols=37  Identities=32%  Similarity=0.468  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      +.++||+|||||+||+++|..|++.|.+|+|+|+...
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            3458999999999999999999999999999999764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.56  E-value=1.9e-07  Score=96.06  Aligned_cols=38  Identities=34%  Similarity=0.516  Sum_probs=34.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      .++||||||||+||++||+.|++.|.+|+|+||....+
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~   54 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTR   54 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            35899999999999999999999999999999976543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.56  E-value=4.4e-09  Score=110.74  Aligned_cols=41  Identities=34%  Similarity=0.703  Sum_probs=37.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCce
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT   81 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~   81 (477)
                      ...+||+|||||++|++||..|++.|++|+|+|+.+.+||.
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr  374 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR  374 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence            34689999999999999999999999999999998888883

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.56  E-value=3.5e-07  Score=87.15  Aligned_cols=104  Identities=20%  Similarity=0.247  Sum_probs=83.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC----Cc------------CCCC-----CHHHHHHHHHHHHhcCcEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA----DI------------VPSM-----DGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~----~~------------~~~~-----~~~~~~~~~~~l~~~gv~~  272 (477)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+    .+            .+.+     ..++...+.+.+++.|+++
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  101 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI  101 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            5789999999999999999999999999999854    11            1222     2477788888899999999


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.++ +.+++.+++.+.+...  ...++..+.+|.+|+|+|.+|+...
T Consensus       102 ~~~~-v~~i~~~~~~~~v~~~--~~~~~~~~~~d~vvlAtG~~~~~~~  146 (338)
T 3itj_A          102 ITET-VSKVDLSSKPFKLWTE--FNEDAEPVTTDAIILATGASAKRMH  146 (338)
T ss_dssp             ECSC-EEEEECSSSSEEEEET--TCSSSCCEEEEEEEECCCEEECCCC
T ss_pred             EEeE-EEEEEEcCCEEEEEEE--ecCCCcEEEeCEEEECcCCCcCCCC
Confidence            9988 9999887777776653  1224568999999999999887653

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.55  E-value=2e-07  Score=96.56  Aligned_cols=37  Identities=35%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      .++||||||||.||++||++|++.|.+|+||||....
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            3589999999999999999999999999999997654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.55  E-value=7.2e-07  Score=84.91  Aligned_cols=96  Identities=19%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---------------CCC----CHHHHHHHHHHHHhcCcEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------PSM----DGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---------------~~~----~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.               +.+    ..++...+.+.+++.+++++++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            579999999999999999999999999999876431               111    1456667777888889999999


Q ss_pred             ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ++|..++.+++.+.+.+.     ++.++.+|.+|+|+|..
T Consensus        86 ~~v~~i~~~~~~~~v~~~-----~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           86 ERAETLEREGDLFKVTTS-----QGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             CCEEEEEEETTEEEEEET-----TSCEEEEEEEEECCTTS
T ss_pred             CEEEEEEECCCEEEEEEC-----CCCEEEeCEEEECCCCC
Confidence            999999887766666543     44679999999999984

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.55  E-value=7.1e-08  Score=98.60  Aligned_cols=38  Identities=34%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.....
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            35899999999999999999999999999999976543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.55  E-value=2e-06  Score=86.76  Aligned_cols=63  Identities=11%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +..+...+.+.+++.|++++++++|+++..+++...+++.+..++...++.+|.||+|+|...
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            446777788888889999999999999988776556666432233335799999999999654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.55  E-value=5.9e-08  Score=90.87  Aligned_cols=39  Identities=38%  Similarity=0.523  Sum_probs=35.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCce
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGT   81 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~   81 (477)
                      .+||+|||||++|+++|..|++.  |++|+|+|+...+||.
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg  105 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence            46999999999999999999998  9999999998888754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.54  E-value=7.3e-07  Score=88.91  Aligned_cols=106  Identities=21%  Similarity=0.305  Sum_probs=80.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHH---cCCc---EEEEEeCCCcCC-------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR---LGSE---VTVVEFAADIVP-------------------------------------  251 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~---~g~~---Vtli~~~~~~~~-------------------------------------  251 (477)
                      ++|+|||||+.|+.+|..|++   .|.+   |+++++.+.+..                                     
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   9999   999998764310                                     


Q ss_pred             CC---------------CHHHHHHHHHHHHhcCcE--EEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEee
Q 011787          252 SM---------------DGEIRKQFQRSLEKQKMK--FMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       252 ~~---------------~~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                      .+               ..++.+.+.+.+++.|++  +.++++|+.++..++  ...+++.+..++...++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            00               034556677777777888  889999999987765  56666654323333679999999999


Q ss_pred             c--CCCCCCC
Q 011787          313 G--RTPFTAG  320 (477)
Q Consensus       313 G--~~p~~~~  320 (477)
                      |  ..|+...
T Consensus       163 G~~s~p~~p~  172 (464)
T 2xve_A          163 GHFSTPYVPE  172 (464)
T ss_dssp             CSSSSBCCCC
T ss_pred             CCCCCCccCC
Confidence            9  6777643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.54  E-value=7.2e-07  Score=87.23  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+.+..
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   61 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR   61 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence            4689999999999999999999999999999997654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.53  E-value=3.2e-07  Score=91.25  Aligned_cols=37  Identities=24%  Similarity=0.196  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~   78 (477)
                      .++||+|||||++|+++|++|++.| .+|+|||++..+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~   59 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP   59 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence            4689999999999999999999999 999999994443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.52  E-value=5.3e-07  Score=84.16  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=78.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc---------CCCC----CHHHHHHHHHHHHhc-CcEEEeCceEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---------VPSM----DGEIRKQFQRSLEKQ-KMKFMLKTKVVG  280 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~---------~~~~----~~~~~~~~~~~l~~~-gv~~~~~~~v~~  280 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+..         ++..    ..++...+.+.+++. +++++. .+++.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEE
Confidence            47999999999999999999999999999975422         1111    135667777777776 788875 58999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      ++.+++...+.+.     ++.++.+|.+|+|+|..|+..
T Consensus        82 i~~~~~~~~v~~~-----~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSFGEFIVEID-----GGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEETTEEEEEET-----TSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcCCeEEEEEC-----CCCEEEcCEEEECCCCCCCCC
Confidence            9888777777764     456899999999999988764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.52  E-value=1.2e-07  Score=92.68  Aligned_cols=35  Identities=23%  Similarity=0.534  Sum_probs=32.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ++||+|||||++|+++|..|++.|.+|+|+|+...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            37999999999999999999999999999999653

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.51  E-value=5.9e-07  Score=91.48  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH---CCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~---~g~~V~lie~~~   76 (477)
                      ..+||+|||||++|+++|..|++   .|.+|+|||+..
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            46899999999999999999999   999999999954

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.51  E-value=5.4e-07  Score=90.71  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      ..++||+||||||+|+++|..|++.|.+|+|||+....+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            356899999999999999999999999999999976553

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.50  E-value=8.9e-07  Score=83.33  Aligned_cols=99  Identities=22%  Similarity=0.309  Sum_probs=78.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCC-----------cCCCC----C-HHHHHHHHHHHHhcCcEEEeCceE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAAD-----------IVPSM----D-GEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~-----------~~~~~----~-~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      +++|||+|+.|+.+|..|++.|. +|+++++...           ..+.+    + .++.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            68999999999999999999999 9999998531           01222    1 45677777888888999987 789


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ..++.+++.+.+.+.     ++.++.+|.+|+|+|..|....
T Consensus        82 ~~i~~~~~~~~v~~~-----~g~~~~~~~vv~AtG~~~~~~~  118 (311)
T 2q0l_A           82 QRVSKKDSHFVILAE-----DGKTFEAKSVIIATGGSPKRTG  118 (311)
T ss_dssp             EEEEEETTEEEEEET-----TSCEEEEEEEEECCCEEECCCC
T ss_pred             EEEEEcCCEEEEEEc-----CCCEEECCEEEECCCCCCCCCC
Confidence            999887776666553     4568999999999998886543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.49  E-value=5.5e-07  Score=88.28  Aligned_cols=38  Identities=34%  Similarity=0.435  Sum_probs=34.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG   79 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~G   79 (477)
                      .++||+|||||++|+++|+.|++.  |.+|+|||+....+
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~   74 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN   74 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            358999999999999999999999  99999999975443

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.48  E-value=1.3e-06  Score=86.90  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=79.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCC---C------------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVP---S------------------------------------  252 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~---~------------------------------------  252 (477)
                      ..+|+|||||+.|+.+|..|++.|.  +|+++++.+.+..   .                                    
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~   85 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   85 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence            4689999999999999999999999  9999998753310   0                                    


Q ss_pred             -------------C--------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCc-eEEEE
Q 011787          253 -------------M--------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE-KTILE  304 (477)
Q Consensus       253 -------------~--------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~-~~~i~  304 (477)
                                   +              ..++.+.+.+..++.+..++++++|++++..++.+.+++.+..++. ..++.
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~  165 (447)
T 2gv8_A           86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  165 (447)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEE
Confidence                         0              0134555666666667788899999999888877777776422222 23799


Q ss_pred             cCEEEEeecC--CCCCC
Q 011787          305 ADVVLVSAGR--TPFTA  319 (477)
Q Consensus       305 ~D~vi~a~G~--~p~~~  319 (477)
                      +|.||+|+|.  .|+..
T Consensus       166 ~d~VVvAtG~~s~p~~p  182 (447)
T 2gv8_A          166 FDAVSICNGHYEVPYIP  182 (447)
T ss_dssp             ESEEEECCCSSSSBCBC
T ss_pred             eCEEEECCCCCCCCCCC
Confidence            9999999998  66654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.48  E-value=1.5e-06  Score=88.86  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      +..+...+.+.+++.|++++++++|+++..+++++. +++.+..++++.++.+|.||+|+|..
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            445666677778889999999999999988777643 55544334455589999999999954

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.48  E-value=4.3e-07  Score=94.36  Aligned_cols=40  Identities=25%  Similarity=0.454  Sum_probs=35.4

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCCCCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALG   79 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~G   79 (477)
                      +..++||+||||||+|+++|..|++ .|.+|+||||....+
T Consensus        29 ~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           29 VPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            3446899999999999999999999 999999999976553

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.47  E-value=1.5e-06  Score=83.69  Aligned_cols=98  Identities=14%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---------------CCC----CHHHHHHHHHHHHhcCcEEEe
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------PSM----DGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---------------~~~----~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.               +.+    ..++.+.+.+.+++.++++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            3579999999999999999999999999999876431               111    156677778888888999999


Q ss_pred             CceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          275 KTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       275 ~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +++|+.++..++ .+.+.+.     ++.++.+|.+|+|+|..+
T Consensus        94 ~~~v~~i~~~~~~~~~v~~~-----~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           94 NETVTKYTKLDDGTFETRTN-----TGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             SCCEEEEEECTTSCEEEEET-----TSCEEEEEEEEECCTTCS
T ss_pred             CCEEEEEEECCCceEEEEEC-----CCcEEEeeEEEEccCCCc
Confidence            999999987654 5566653     456899999999999844

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.46  E-value=8.6e-07  Score=89.50  Aligned_cols=99  Identities=19%  Similarity=0.333  Sum_probs=79.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc------------------------------------C------C
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI------------------------------------V------P  251 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~------------------------------------~------~  251 (477)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+                                    +      +
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            468999999999999999999999999999987532                                    0      0


Q ss_pred             CC------------------------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCce
Q 011787          252 SM------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEK  300 (477)
Q Consensus       252 ~~------------------------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~  300 (477)
                      .+                              ...+.+.+.+.+++.|++++++++|+++..+++++. +++.     ++
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~-----~G  261 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS-----NG  261 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEET-----TS
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEEC-----CC
Confidence            00                              034555677778889999999999999988777654 6654     55


Q ss_pred             EEEEcCEEEEeecCCCC
Q 011787          301 TILEADVVLVSAGRTPF  317 (477)
Q Consensus       301 ~~i~~D~vi~a~G~~p~  317 (477)
                      +++.+|.||+|+|..+.
T Consensus       262 ~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          262 EEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             CEEECSCEEECCCTTCH
T ss_pred             CEEECCEEEECCCCChh
Confidence            68999999999999884

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.45  E-value=6.1e-07  Score=87.12  Aligned_cols=99  Identities=16%  Similarity=0.275  Sum_probs=75.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---CCCC---------HHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---PSMD---------GEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~~~~---------~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      -+|+|||||+.|+.+|..|...+.+|+++++.+.+.   +.++         .++.....+.+++.|++++++++|++++
T Consensus        10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id   89 (385)
T 3klj_A           10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID   89 (385)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence            469999999999999999977888999999887641   1111         1111223456678899999999999998


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++..+  ++.     +++++.+|.+|+|||.+|+...
T Consensus        90 ~~~~~v--~~~-----~g~~~~yd~lvlAtG~~p~~p~  120 (385)
T 3klj_A           90 PNNKLV--TLK-----SGEKIKYEKLIIASGSIANKIK  120 (385)
T ss_dssp             TTTTEE--EET-----TSCEEECSEEEECCCEEECCCC
T ss_pred             CCCCEE--EEC-----CCCEEECCEEEEecCCCcCCCC
Confidence            766543  433     5678999999999999887654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.44  E-value=8.5e-08  Score=97.18  Aligned_cols=41  Identities=34%  Similarity=0.445  Sum_probs=38.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCCCCCceee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~GG~~~   83 (477)
                      ++||+|||||++||+||+.|++ .|++|+|+|+++.+||.|.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence            5899999999999999999987 5999999999999999764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.41  E-value=2e-06  Score=81.55  Aligned_cols=99  Identities=20%  Similarity=0.236  Sum_probs=76.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-----------IVPSM-----DGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~~-----~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.+     ..++.+.+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            5799999999999999999999999999998731           01222     235667777888889999987 688


Q ss_pred             EEEEEc--CCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          279 VGVDLS--GDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       279 ~~i~~~--~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .+++.+  ++. +.+.+.     ++.++.+|.+|+|+|..|+..
T Consensus        88 ~~i~~~~~~~~~~~v~~~-----~g~~~~~~~vv~AtG~~~~~~  126 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRG-----YNGEYRAKAVILATGADPRKL  126 (325)
T ss_dssp             EEEEECTTSSSCCEEEEE-----SSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEeccCCCceEEEEEC-----CCCEEEeCEEEECcCCCcCCC
Confidence            888776  443 455443     456899999999999988654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.39  E-value=2.1e-06  Score=83.75  Aligned_cols=97  Identities=23%  Similarity=0.315  Sum_probs=76.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----------------C-------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------------S-------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----------------~-------------------------  252 (477)
                      .+|+|||+|+.|+.+|..+++.|.+|+++++.+.+..                 .                         
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            3699999999999999999999999999998764310                 0                         


Q ss_pred             ----------------------CCHHHHHHHHHHHHhcCcEEEeCceEEEEEEc----CCeEEEEEeecCCCceEEEEcC
Q 011787          253 ----------------------MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS----GDGVKLTLEPAAGGEKTILEAD  306 (477)
Q Consensus       253 ----------------------~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~----~~~~~v~~~~~~~~~~~~i~~D  306 (477)
                                            ...++.+.+.+.+++.|++++++++|+++..+    ++++.+++.     ++ ++.+|
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~-----~g-~i~ad  158 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN-----ST-QWQCK  158 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET-----TE-EEEES
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC-----CC-EEECC
Confidence                                  12344556777788889999999999999866    555655542     33 79999


Q ss_pred             EEEEeecCCCC
Q 011787          307 VVLVSAGRTPF  317 (477)
Q Consensus       307 ~vi~a~G~~p~  317 (477)
                      .||+|+|..+.
T Consensus       159 ~VVlAtG~~s~  169 (401)
T 2gqf_A          159 NLIVATGGLSM  169 (401)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999998884

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.38  E-value=2.2e-07  Score=90.85  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=41.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCCCceeecc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~   85 (477)
                      |+.++||+|||||++|++||..|++. |.+|+|+|+++.+||.|...
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~   50 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE   50 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence            44578999999999999999999998 99999999999999987543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.38  E-value=2.9e-06  Score=81.90  Aligned_cols=97  Identities=21%  Similarity=0.351  Sum_probs=75.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCC------C------c-CCC----------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA------D------I-VPS----------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~------~------~-~~~----------------------------  252 (477)
                      .+|+|||+|+.|+.+|..|++.|. +|+++++.+      .      + .+.                            
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            469999999999999999999999 999999875      0      0 000                            


Q ss_pred             CC-HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          253 MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       253 ~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      .+ .++...+.+.+++.|++++++++|.+++.+++.+.+.+.     ++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATT-----TE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES-----SC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeC-----CC-EEEeCEEEECCCCCCc
Confidence            01 234556677778889999999999999877666666653     22 5899999999998765

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.37  E-value=2.7e-07  Score=91.82  Aligned_cols=45  Identities=24%  Similarity=0.338  Sum_probs=41.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      |+..+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            445689999999999999999999999999999999999997654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.37  E-value=1.7e-06  Score=81.41  Aligned_cols=99  Identities=24%  Similarity=0.277  Sum_probs=77.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEE-EEeCCCc------------CCCCC-----HHHHHHHHHHHHhcCcEEEeC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTV-VEFAADI------------VPSMD-----GEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtl-i~~~~~~------------~~~~~-----~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      ..+|+|||+|+.|+.+|..|++.|.+|++ +++. .+            .|.++     .++...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            35899999999999999999999999999 8873 21            12223     577788888889999999987


Q ss_pred             ceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          276 TKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       276 ~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                       ++.++ .++  +.+.+.+..    ++ ++.+|.+|+|+|..|+...
T Consensus        83 -~v~~i-~~~~~~~~~v~~~~----~~-~~~~d~lvlAtG~~~~~~~  122 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSFTIKLEG----GK-TELAKAVIVCTGSAPKKAG  122 (315)
T ss_dssp             -CEEEE-EECTTSCEEEEETT----SC-EEEEEEEEECCCEEECCCC
T ss_pred             -EEEEE-ecCCCCcEEEEEec----CC-EEEeCEEEEeeCCCCCCCC
Confidence             88888 665  566643431    33 8999999999999887643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.36  E-value=2.5e-06  Score=82.75  Aligned_cols=97  Identities=20%  Similarity=0.323  Sum_probs=77.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----------------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----------------------------------------  252 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----------------------------------------  252 (477)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987654210                                         


Q ss_pred             ---CC-----------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          253 ---MD-----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       253 ---~~-----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                         ++           ..+.+.+.+.+++.|++++++++|++++. + + .+++.     +++++.+|.||.|+|..+..
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~-----~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQ-----TGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEET-----TSCEEECSEEEECCCTTCHH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEEC-----CCCEEEcCEEEECCCccHHH
Confidence               00           34466677788888999999999999976 3 3 55554     45689999999999988754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.36  E-value=3e-07  Score=91.11  Aligned_cols=98  Identities=20%  Similarity=0.354  Sum_probs=74.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHH---cCCcEEEEEeCCCc--CCC---------CCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAADI--VPS---------MDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~---~g~~Vtli~~~~~~--~~~---------~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ++|+|||||+.|+.+|..|++   .|.+|+++++.+.+  .+.         ...++...+.+.+++.|++++ ..+++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~-~~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEE-CSCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEE-EeEEEE
Confidence            689999999999999999998   78999999988865  111         112333335667788899998 468999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ++.+++  .+++.     +++++.+|.+|+|+|.+|+...
T Consensus        84 id~~~~--~V~~~-----~g~~i~~d~lviAtG~~~~~~~  116 (437)
T 3sx6_A           84 IDAEAQ--NITLA-----DGNTVHYDYLMIATGPKLAFEN  116 (437)
T ss_dssp             EETTTT--EEEET-----TSCEEECSEEEECCCCEECGGG
T ss_pred             EEcCCC--EEEEC-----CCCEEECCEEEECCCCCcCccc
Confidence            976655  34443     4568999999999999987643

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.35  E-value=2.8e-06  Score=88.09  Aligned_cols=58  Identities=7%  Similarity=0.059  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhc-Cc-EEEeCceEEEEEEcCC---eEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          258 RKQFQRSLEKQ-KM-KFMLKTKVVGVDLSGD---GVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       258 ~~~~~~~l~~~-gv-~~~~~~~v~~i~~~~~---~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ...+.+.+++. || +++.++.++++..+++   ++. +.+.+..++....+.++.||+|+|-.
T Consensus       154 ~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~  217 (643)
T 1jnr_A          154 KPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA  217 (643)
T ss_dssp             HHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             HHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence            34455566666 99 9999999999987665   554 44333334444579999999999943

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.35  E-value=1.5e-06  Score=81.61  Aligned_cols=99  Identities=12%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC--CcC-----C---C----CCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA--DIV-----P---S----MDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~--~~~-----~---~----~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +++|||+|+.|+.+|..|++.|.+|+++++..  .+.     +   .    ..+++.+.+.+.+++.|++++.+++++.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999999999996431  000     0   0    12466777888888899999999999999


Q ss_pred             EEcC---CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          282 DLSG---DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       282 ~~~~---~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      +.+.   +...+.+.     ++.++.+|.+|+|+|..|...
T Consensus        83 ~~~~~~~~~~~v~~~-----~g~~~~~~~lv~AtG~~~~~~  118 (310)
T 1fl2_A           83 IPAAVEGGLHQIETA-----SGAVLKARSIIVATGAKWRNM  118 (310)
T ss_dssp             ECCSSTTCCEEEEET-----TSCEEEEEEEEECCCEEECCC
T ss_pred             EecccCCceEEEEEC-----CCCEEEeCEEEECcCCCcCCC
Confidence            7542   24556554     446899999999999887654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.34  E-value=4.1e-07  Score=87.35  Aligned_cols=49  Identities=20%  Similarity=0.385  Sum_probs=43.2

Q ss_pred             CCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-CCCCceeecc
Q 011787           37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNV   85 (477)
Q Consensus        37 ~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~~   85 (477)
                      .+++...+||+|||||++|++||+.|++.|++|+|+|++ +.+||.|...
T Consensus        38 ~~~~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~   87 (376)
T 2e1m_A           38 LNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF   87 (376)
T ss_dssp             SSSCCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred             CCCCCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence            344556789999999999999999999999999999999 9999987543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.33  E-value=3.3e-07  Score=89.96  Aligned_cols=101  Identities=21%  Similarity=0.256  Sum_probs=76.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHH---cCCcEEEEEeCCCcC--CC---------CCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAADIV--PS---------MDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~---~g~~Vtli~~~~~~~--~~---------~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ++|+|||||+.|+.+|..|++   .|.+|+++++++.+.  +.         ...++...+.+.+++.|++++.+ +++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   899999999887541  11         12233444667778889999977 8999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      ++.++..+.  +.+ ..+...++.+|.+|+|+|.+|+..
T Consensus        81 i~~~~~~V~--~~~-g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAKSSMVY--YTK-PDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETTTTEEE--EEC-TTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCCCCEEE--Ecc-CCcccceeeCCEEEECCCCCcCcc
Confidence            976655444  332 122335699999999999998764

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.32  E-value=1.4e-06  Score=88.47  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH------------CCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ------------LGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~------------~g~~V~lie~~~   76 (477)
                      ..+||+|||||+||+++|..|++            .|.+|+|||+.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            45899999999999999999999            899999999865

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.32  E-value=2.1e-06  Score=83.90  Aligned_cols=99  Identities=19%  Similarity=0.333  Sum_probs=78.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------------------------------------------  251 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------------------------------------------  251 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998754300                                           


Q ss_pred             --C--------------C-CHHHHHHHHHHHHhc-CcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEe
Q 011787          252 --S--------------M-DGEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       252 --~--------------~-~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                        .              + ...+.+.+.+.+++. |++++++++|++++.+++++  .+++.     +++++.+|.||.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~-----~g~~~~ad~vV~A  161 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLN-----DGRVLRPRVVVGA  161 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEET-----TSCEEEEEEEEEC
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEEC-----CCCEEECCEEEEC
Confidence              0              0 024455666677776 99999999999998887777  67664     4458999999999


Q ss_pred             ecCCCCC
Q 011787          312 AGRTPFT  318 (477)
Q Consensus       312 ~G~~p~~  318 (477)
                      +|..+..
T Consensus       162 dG~~s~v  168 (399)
T 2x3n_A          162 DGIASYV  168 (399)
T ss_dssp             CCTTCHH
T ss_pred             CCCChHH
Confidence            9987753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.31  E-value=1.4e-06  Score=86.56  Aligned_cols=102  Identities=22%  Similarity=0.401  Sum_probs=77.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC--CC-----CCH------HHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--PS-----MDG------EIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~~-----~~~------~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ++|+|||||+.|+.+|..|++.  |.+|+++++.+.+.  +.     +..      ++.....+.+++.|++++++++|+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5799999999999999999998  88999999887642  10     001      111113456778899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +++.+++.+.+..    ..++.++.+|.+|+|+|.+|....
T Consensus        83 ~id~~~~~v~v~~----~~~~~~~~~d~lviAtG~~p~~p~  119 (452)
T 3oc4_A           83 AMDVENQLIAWTR----KEEQQWYSYDKLILATGASQFSTQ  119 (452)
T ss_dssp             EEETTTTEEEEEE----TTEEEEEECSEEEECCCCCBCCCC
T ss_pred             EEECCCCEEEEEe----cCceEEEEcCEEEECCCcccCCCC
Confidence            9988777766652    125678999999999999987653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.30  E-value=3.8e-06  Score=79.30  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-----------cCCCC----CHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-----------IVPSM----DGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~~----~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++...           ..+.+    ..++.+.+.+.+++.|++++. .++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~   95 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR   95 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence            5799999999999999999999999999998531           01211    245666777788888999987 7899


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .++.+++.+.+.+      ++.++.+|.+|+|+|..|+..
T Consensus        96 ~i~~~~~~~~v~~------~~~~~~~~~li~AtG~~~~~~  129 (319)
T 3cty_A           96 SIKKTQGGFDIET------NDDTYHAKYVIITTGTTHKHL  129 (319)
T ss_dssp             EEEEETTEEEEEE------SSSEEEEEEEEECCCEEECCC
T ss_pred             EEEEeCCEEEEEE------CCCEEEeCEEEECCCCCcccC
Confidence            9987777665554      235799999999999887654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.30  E-value=3.3e-06  Score=86.09  Aligned_cols=37  Identities=30%  Similarity=0.506  Sum_probs=34.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      ++||+||||||+|+++|..|++.|.+|+||||....+
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~   62 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI   62 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            5799999999999999999999999999999987654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.30  E-value=2.2e-06  Score=87.11  Aligned_cols=100  Identities=23%  Similarity=0.312  Sum_probs=78.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--------C-------------CC----------------CHHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P-------------SM----------------DGEI  257 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~-------------~~----------------~~~~  257 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        |             .+                .+++
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            579999999999999999999999999999865331        0             01                1356


Q ss_pred             HHHHHHHHHhcCc--EEEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeec--CCCCCC
Q 011787          258 RKQFQRSLEKQKM--KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAG--RTPFTA  319 (477)
Q Consensus       258 ~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~G--~~p~~~  319 (477)
                      .+.+.+..++.|+  ++.++++|++++.+++  .+.+++.     +++++.+|.||+|+|  ..|+..
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~-----~G~~i~ad~lV~AtG~~s~p~~p  164 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTD-----RGDEVSARFLVVAAGPLSNANTP  164 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEET-----TCCEEEEEEEEECCCSEEECCCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEEC-----CCCEEEeCEEEECcCCCCCCCCC
Confidence            6777778888888  8899999999987665  5556654     556899999999999  566544

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.30  E-value=9.2e-07  Score=85.35  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---C--------CC-HHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S--------MD-GEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---~--------~~-~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .+.+++|||+|+.|+.+|..+++.| +|+++++.+....   .        .+ .++.....+.+++.|++++.+++++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            4688999999999999999999999 9999998775321   0        11 11112234566778999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ++.....  ++ .     +++++.+|.+|+|||.+|+...
T Consensus        86 id~~~~~--V~-~-----~g~~~~~d~lViATGs~p~~p~  117 (367)
T 1xhc_A           86 IDRGRKV--VI-T-----EKGEVPYDTLVLATGARAREPQ  117 (367)
T ss_dssp             EETTTTE--EE-E-----SSCEEECSEEEECCCEEECCCC
T ss_pred             EECCCCE--EE-E-----CCcEEECCEEEECCCCCCCCCC
Confidence            9765433  33 2     4568999999999999987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.30  E-value=3.3e-06  Score=79.69  Aligned_cols=99  Identities=16%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-----------IVPSM-----DGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~~-----~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++...           ..+.+     .+++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999985421           01222     24667777788888999999886 8


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ..++.+++.+.+ +.     ++.++.+|.+++|+|..|....
T Consensus        85 ~~i~~~~~~~~v-~~-----~~~~~~~~~lv~AtG~~~~~~~  120 (320)
T 1trb_A           85 NKVDLQNRPFRL-NG-----DNGEYTCDALIIATGASARYLG  120 (320)
T ss_dssp             EEEECSSSSEEE-EE-----SSCEEEEEEEEECCCEEECCCC
T ss_pred             eEEEecCCEEEE-Ee-----CCCEEEcCEEEECCCCCcCCCC
Confidence            888877666666 33     4568999999999999886643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.29  E-value=2.2e-06  Score=84.01  Aligned_cols=99  Identities=17%  Similarity=0.330  Sum_probs=73.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCc--EEEEEeCCCcC---CCCCHHHH---------HHHHHHHHhcCcEEEeCceEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSE--VTVVEFAADIV---PSMDGEIR---------KQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~--Vtli~~~~~~~---~~~~~~~~---------~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ++++|||+|+.|+.+|..|++.|.+  |+++++.+.+.   +.+.+.+.         ....+.+++.|++++.+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5799999999999999999999987  99999877541   11111111         1123456778999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ++.....  +.+.     +++++.+|.+++|+|.+|+...
T Consensus        83 id~~~~~--v~~~-----~g~~~~~d~lvlAtG~~p~~~~  115 (410)
T 3ef6_A           83 LDVQTRT--ISLD-----DGTTLSADAIVIATGSRARTMA  115 (410)
T ss_dssp             EETTTTE--EEET-----TSCEEECSEEEECCCEEECCCC
T ss_pred             EECCCCE--EEEC-----CCCEEECCEEEEccCCcccCCC
Confidence            9766543  3333     5568999999999999887653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.29  E-value=4.7e-06  Score=84.54  Aligned_cols=100  Identities=21%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             CeeEEEcccHHHHHHHHHHH-HcCCcEEEEEeCCCcC--------CC-------------C----------------CHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWA-RLGSEVTVVEFAADIV--------PS-------------M----------------DGE  256 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~-~~g~~Vtli~~~~~~~--------~~-------------~----------------~~~  256 (477)
                      .+|+|||||+.|+.+|..|+ +.|.+|+++++.+.+.        |.             +                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 9999999999876431        10             1                135


Q ss_pred             HHHHHHHHHHhcCc--EEEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeecC--CCCCC
Q 011787          257 IRKQFQRSLEKQKM--KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAGR--TPFTA  319 (477)
Q Consensus       257 ~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~G~--~p~~~  319 (477)
                      +.+.+.+..++.|+  .+.++++|++++.+++  .+.+++.     +++++.+|.||+|+|.  .|+..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~-----~G~~i~ad~lV~AtG~~s~p~~p  152 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTD-----HGEVYRAKYVVNAVGLLSAINFP  152 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEET-----TSCEEEEEEEEECCCSCCSBCCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEc-----CCCEEEeCEEEECCcccccCCCC
Confidence            66777778888888  8999999999987765  5566654     4568999999999994  56543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.29  E-value=5.8e-07  Score=87.03  Aligned_cols=45  Identities=27%  Similarity=0.480  Sum_probs=41.0

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      +...+||+|||||++|+++|..|++.|.+|+|+|+++.+||.|..
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence            345789999999999999999999999999999999999998753

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.28  E-value=3e-07  Score=90.85  Aligned_cols=97  Identities=21%  Similarity=0.301  Sum_probs=71.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcC--CCC--------C-HHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--PSM--------D-GEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~--~~~--------~-~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .|+|+|||||+.|+.+|..|++.+  .+||++++++.+.  |.+        + .++...+.+.+++.||+++.+ +|++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~   80 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES   80 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence            478999999999999999999876  6899999887542  111        1 111112345567789999855 7999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      |+.+++.+.  +.     +++++++|.+|+|+|.++..
T Consensus        81 Id~~~~~V~--~~-----~g~~i~YD~LViAtG~~~~~  111 (430)
T 3hyw_A           81 IDPDANTVT--TQ-----SGKKIEYDYLVIATGPKLVF  111 (430)
T ss_dssp             EETTTTEEE--ET-----TCCEEECSEEEECCCCEEEC
T ss_pred             EECCCCEEE--EC-----CCCEEECCEEEEeCCCCccC
Confidence            977666544  33     66789999999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.28  E-value=8.3e-06  Score=81.13  Aligned_cols=97  Identities=22%  Similarity=0.356  Sum_probs=67.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.         |.     ..                         
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~~-----~~-------------------------  207 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL---------PT-----MD-------------------------  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------TT-----SC-------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc---------cc-----cC-------------------------
Confidence            3689999999999999999999999999999854321         10     00                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+.+.+.+.+++.+++++.+ .+..++  .+.+.+.+.+|  .++.+|.||+|+|.+|..
T Consensus       208 ----------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          208 ----------LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGG--EVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ----------HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEECC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCC--eEEEcCEEEECcCCCcCC
Confidence                      001112234455568888876 344443  34566666666  679999999999998853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.27  E-value=2.3e-06  Score=81.26  Aligned_cols=99  Identities=21%  Similarity=0.274  Sum_probs=77.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEe----CCCc------------CCCC-----CHHHHHHHHHHHHhcCcEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEF----AADI------------VPSM-----DGEIRKQFQRSLEKQKMKFM  273 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~----~~~~------------~~~~-----~~~~~~~~~~~l~~~gv~~~  273 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++    ...+            .+.+     ..++...+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999997    2211            1122     23667777788888999999


Q ss_pred             eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       274 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++ +..++..++.+.+++      ++.++.+|.+|+|+|..|....
T Consensus        89 ~~~-v~~i~~~~~~~~v~~------~~~~~~~~~vv~A~G~~~~~~~  128 (333)
T 1vdc_A           89 TET-VTKVDFSSKPFKLFT------DSKAILADAVILAIGAVAKRLS  128 (333)
T ss_dssp             CCC-CCEEECSSSSEEEEC------SSEEEEEEEEEECCCEEECCCC
T ss_pred             EeE-EEEEEEcCCEEEEEE------CCcEEEcCEEEECCCCCcCCCC
Confidence            886 888887666666653      3468999999999999876543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.27  E-value=4.9e-07  Score=91.76  Aligned_cols=43  Identities=37%  Similarity=0.601  Sum_probs=39.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      .++||+|||||+||++||..|++.|++|+|+|+++.+||.+..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t   45 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT   45 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence            4579999999999999999999999999999999999997643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.26  E-value=4.8e-06  Score=79.23  Aligned_cols=100  Identities=18%  Similarity=0.184  Sum_probs=76.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEeCce
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-----------IVPSM-----DGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-----------~~~~~-----~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.+     .+++...+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            46799999999999999999999999999985421           01222     24667777788888899999886 


Q ss_pred             EEEEEEcCCeEEE-EEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          278 VVGVDLSGDGVKL-TLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       278 v~~i~~~~~~~~v-~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +..++. ++.+.+ .+.     ++.++.+|.+|+|+|..|....
T Consensus        93 v~~i~~-~~~~~v~~~~-----~g~~~~~d~lviAtG~~~~~~~  130 (335)
T 2a87_A           93 VESVSL-HGPLKSVVTA-----DGQTHRARAVILAMGAAARYLQ  130 (335)
T ss_dssp             EEEEEC-SSSSEEEEET-----TSCEEEEEEEEECCCEEECCCC
T ss_pred             EEEEEe-CCcEEEEEeC-----CCCEEEeCEEEECCCCCccCCC
Confidence            888876 444455 443     4568999999999999886543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.26  E-value=4.4e-06  Score=81.76  Aligned_cols=35  Identities=34%  Similarity=0.430  Sum_probs=32.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ++|+||||||||+++|..|++.|++|+|+||.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            58999999999999999999999999999997644

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.25  E-value=3.7e-06  Score=82.08  Aligned_cols=100  Identities=18%  Similarity=0.293  Sum_probs=75.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC------CCHHHHHH---------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRKQ---------------------------  260 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~~---------------------------  260 (477)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.+.....      +.+...+.                           
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987654211      22222211                           


Q ss_pred             ----------------HHHHHHh--cCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          261 ----------------FQRSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       261 ----------------~~~~l~~--~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                                      +.+.|.+  .|++++++++|++++.+++++.+++.     +++++.+|+||.|.|..+..
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS-----DGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET-----TSCEEEESEEEECCCTTCHH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEEC-----CCCEEECCEEEECCCcchhH
Confidence                            2222222  37889999999999988888887765     45689999999999987653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.25  E-value=6.7e-07  Score=88.13  Aligned_cols=41  Identities=34%  Similarity=0.520  Sum_probs=38.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      +||+|||||++|++||++|++.|++|+|+|+++.+||.+..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~   41 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN   41 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence            48999999999999999999999999999999999997654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.24  E-value=1.8e-06  Score=85.31  Aligned_cols=100  Identities=18%  Similarity=0.307  Sum_probs=73.8

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcC---CCCC----------HHHHHHHHHHHHhcCcEEEeCceE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIV---PSMD----------GEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~---~~~~----------~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+.   +.+.          ..+.....+.+++.|++++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            3689999999999999999999997  799999776431   0000          111111235567889999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.++.++..  +.+.     +++++.+|.+|+|+|.+|+...
T Consensus        84 ~~i~~~~~~--v~~~-----~g~~~~~d~lviAtG~~p~~~~  118 (431)
T 1q1r_A           84 TAINRDRQQ--VILS-----DGRALDYDRLVLATGGRPRPLP  118 (431)
T ss_dssp             EEEETTTTE--EEET-----TSCEEECSEEEECCCEEECCCG
T ss_pred             EEEECCCCE--EEEC-----CCCEEECCEEEEcCCCCccCCC
Confidence            999765543  4443     4568999999999999987654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.24  E-value=8.9e-07  Score=87.31  Aligned_cols=43  Identities=30%  Similarity=0.657  Sum_probs=39.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~   84 (477)
                      .++||+|||||++|++||..|++.| .+|+|+|+++.+||.+..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t   48 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS   48 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence            4589999999999999999999999 899999999999997643

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.23  E-value=5e-07  Score=89.97  Aligned_cols=43  Identities=35%  Similarity=0.620  Sum_probs=39.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   46 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT   46 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence            3589999999999999999999999999999999999997643

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.21  E-value=5.7e-07  Score=91.12  Aligned_cols=42  Identities=31%  Similarity=0.467  Sum_probs=39.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~   83 (477)
                      ..+||+|||||+|||+||..|++.| .+|+|+|+++.+||.+.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~   49 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQ   49 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCcee
Confidence            3579999999999999999999999 99999999999999763

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.20  E-value=1.4e-06  Score=87.66  Aligned_cols=43  Identities=37%  Similarity=0.669  Sum_probs=39.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      +...+||+|||||+||++||..|++.|++|+|+|+++.+||.+
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence            4456899999999999999999999999999999999999964

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.20  E-value=9e-06  Score=76.18  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc------CC-------CCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI------VP-------SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~------~~-------~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...-      .+       ...+++.+...+.+.+.+...+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            5899999999999999999999999999975421      01       1124555555555555544444445555554


Q ss_pred             Ec-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          283 LS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       283 ~~-~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .. ++...+.+.     +++++.+|.||+|||.+|....
T Consensus        88 ~~~~~~~~v~~~-----~g~~~~a~~liiATGs~p~~p~  121 (304)
T 4fk1_A           88 KQSTGLFEIVTK-----DHTKYLAERVLLATGMQEEFPS  121 (304)
T ss_dssp             ECTTSCEEEEET-----TCCEEEEEEEEECCCCEEECCS
T ss_pred             ecCCCcEEEEEC-----CCCEEEeCEEEEccCCcccccc
Confidence            43 444555554     5679999999999999887654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.19  E-value=4.5e-06  Score=84.76  Aligned_cols=100  Identities=19%  Similarity=0.324  Sum_probs=76.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--------C-----------------------C------CCHHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P-----------------------S------MDGEI  257 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~-----------------------~------~~~~~  257 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        |                       .      ..+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            479999999999999999999999999999876431        0                       0      12466


Q ss_pred             HHHHHHHHHhcCc--EEEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeec--CCCCCC
Q 011787          258 RKQFQRSLEKQKM--KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAG--RTPFTA  319 (477)
Q Consensus       258 ~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~G--~~p~~~  319 (477)
                      ...+.+..++.|+  .+.++++|++++.+++  .+.+++.     +++++.+|.||+|+|  .+|+..
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~-----~G~~~~ad~lV~AtG~~s~p~~p  152 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD-----NEEVVTCRFLISATGPLSASRMP  152 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEET-----TTEEEEEEEEEECCCSCBC---C
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEEC-----CCCEEEeCEEEECcCCCCCCcCC
Confidence            7777777777787  7888999999976544  5556654     567899999999999  566654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.19  E-value=1.1e-06  Score=86.00  Aligned_cols=99  Identities=19%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCC-CC---------CHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVP-SM---------DGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~-~~---------~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +|+|+|||+|+.|+.+|..|++.+  .+|+++++++.... .+         +.+....-.+.+.+.||+++. .+|+.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~-~~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVH-DSALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEEC-SCEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEE-eEEEEE
Confidence            689999999999999999998876  48999998875421 11         111101112345678999985 478899


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.+.+.+.  +.     ++.++.+|.+++|+|.+++...
T Consensus        81 d~~~~~v~--~~-----~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           81 DPDKKLVK--TA-----GGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             ETTTTEEE--ET-----TSCEEECSEEEECCCEEECGGG
T ss_pred             EccCcEEE--ec-----ccceeecceeeeccCCccccCC
Confidence            76655443  32     5678999999999999887643

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.19  E-value=4.9e-06  Score=84.13  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHH---CCCeEEEEecCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRG   76 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~---~g~~V~lie~~~   76 (477)
                      +||+|||||++|+++|..|++   .|.+|+|||+.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            699999999999999999999   999999999964

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.19  E-value=2.1e-06  Score=84.06  Aligned_cols=98  Identities=14%  Similarity=0.302  Sum_probs=73.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcC---CCC----------CHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIV---PSM----------DGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~---~~~----------~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ++|+|||+|+.|+.+|..|++.|.  +|+++++.+...   +.+          ..++.....+.+.+.+++++. ++++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  899999877431   111          111222234566788999998 9999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++.....  +.+.     ++.++.+|.+++|+|.+|....
T Consensus        81 ~id~~~~~--v~~~-----~g~~~~~d~lvlAtG~~p~~~~  114 (404)
T 3fg2_P           81 SIDREGRK--LLLA-----SGTAIEYGHLVLATGARNRMLD  114 (404)
T ss_dssp             EEETTTTE--EEES-----SSCEEECSEEEECCCEEECCCC
T ss_pred             EEECCCCE--EEEC-----CCCEEECCEEEEeeCCCccCCC
Confidence            99766554  3433     5578999999999998887643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.19  E-value=3.2e-06  Score=83.58  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=75.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCC---CC---------CHH--HHHHHHHHHHhcCcEEEeCceEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVP---SM---------DGE--IRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~---~~---------~~~--~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      +|+|||+|+.|+.+|..+++.|  .+|+++++.+...-   .+         +..  +....++.+++.+++++.+++|+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            4899999999999999999988  46999998765310   00         000  11112345567899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++.....+.+.  ...++++.++.+|.+|+|||.+|+...
T Consensus        82 ~id~~~~~~~~~--~~~~~~~~~~~yd~lVIATGs~p~~p~  120 (437)
T 4eqs_A           82 AINDERQTVSVL--NRKTNEQFEESYDKLILSPGASANSLG  120 (437)
T ss_dssp             EEETTTTEEEEE--ETTTTEEEEEECSEEEECCCEEECCCC
T ss_pred             EEEccCcEEEEE--eccCCceEEEEcCEEEECCCCcccccc
Confidence            997766655544  334556778999999999999987654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.18  E-value=6.8e-06  Score=83.15  Aligned_cols=101  Identities=10%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC--CcC-----------C-CCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA--DIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~--~~~-----------~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ..+|+|||||+.|+.+|..+++.|.+|+++++..  ...           + ...+++...+.+.+++.|++++.+++++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            4679999999999999999999999999997531  111           0 1124677778888889999999999999


Q ss_pred             EEEEcC---CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          280 GVDLSG---DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       280 ~i~~~~---~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .++.+.   +...+++.     ++..+.+|.+|+|+|.+|...
T Consensus       292 ~i~~~~~~~~~~~V~~~-----~g~~~~~d~vVlAtG~~~~~~  329 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETA-----SGAVLKARSIIIATGAKWRNM  329 (521)
T ss_dssp             EEECCSSTTSCEEEEET-----TSCEEEEEEEEECCCEEECCC
T ss_pred             EEEeccCCCceEEEEEC-----CCCEEEcCEEEECCCCCcCCC
Confidence            997542   24556654     456899999999999877653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.18  E-value=8.3e-06  Score=80.92  Aligned_cols=97  Identities=19%  Similarity=0.273  Sum_probs=75.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----------------------C--------------C----
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------------------S--------------M----  253 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----------------------~--------------~----  253 (477)
                      .+|+|||||..|+.+|..+++.|.+|+++++.+.+..                       .              +    
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            4699999999999999999999999999998764210                       0              0    


Q ss_pred             --------------------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCe-EEEEEeecCCCceEEEEcC
Q 011787          254 --------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEAD  306 (477)
Q Consensus       254 --------------------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D  306 (477)
                                                ...+.+.+.+.+++.|++++++++|+++..++++ +.+++.     +++.+.+|
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~-----~G~~i~Ad  181 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ-----TGEVLETN  181 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TCCEEECS
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC-----CCCEEECC
Confidence                                      0233455666777889999999999999877666 456553     34579999


Q ss_pred             EEEEeecCCC
Q 011787          307 VVLVSAGRTP  316 (477)
Q Consensus       307 ~vi~a~G~~p  316 (477)
                      .||+|+|..+
T Consensus       182 ~VVlAtGg~s  191 (447)
T 2i0z_A          182 HVVIAVGGKS  191 (447)
T ss_dssp             CEEECCCCSS
T ss_pred             EEEECCCCCc
Confidence            9999999877

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.18  E-value=6.3e-07  Score=89.62  Aligned_cols=42  Identities=33%  Similarity=0.461  Sum_probs=38.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC------CeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g------~~V~lie~~~~~GG~~~~   84 (477)
                      ++||+|||||++|++||++|++.|      ++|+|+|+++.+||.+..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s   52 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT   52 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence            589999999999999999999999      999999999999986543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.17  E-value=3.8e-06  Score=86.13  Aligned_cols=104  Identities=19%  Similarity=0.242  Sum_probs=75.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC-C----------CC-CH--HHHHHHHHHHHhcCcEEEeCceE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-P----------SM-DG--EIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~-~----------~~-~~--~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++.+.+. .          .+ +.  .+........++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5799999999999999999998  78999999887641 0          00 00  11112233344579999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ++++.+++.+.+..  ..+++..++.+|.+|+|||.+|....
T Consensus        82 ~~id~~~~~v~~~~--~~~g~~~~~~~d~lviAtG~~p~~p~  121 (565)
T 3ntd_A           82 VAIDRAAKLVTVRR--LLDGSEYQESYDTLLLSPGAAPIVPP  121 (565)
T ss_dssp             EEEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEECCCCEEEEEe--cCCCCeEEEECCEEEECCCCCCCCCC
Confidence            99987776655542  22345568999999999999887653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.17  E-value=1.1e-05  Score=80.08  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----C--------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----S--------------------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----~--------------------------------------  252 (477)
                      .+|+|||||+.|+.+|..|++.|.+|+++++.+....    .                                      
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            3699999999999999999999999999998764210    0                                      


Q ss_pred             ----------CC-HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          253 ----------MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       253 ----------~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                                ++ ..+.+.+.+.+++.|++++++++|+++..+++.+. +++.+..+++..++.+|.||.|+|..+..
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                      00 23556666777778999999999999988777765 55543213334589999999999987754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.16  E-value=2.7e-06  Score=83.64  Aligned_cols=100  Identities=21%  Similarity=0.288  Sum_probs=75.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCc--EEEEEeCCCcC---C-----CC-----CHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSE--VTVVEFAADIV---P-----SM-----DGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~--Vtli~~~~~~~---~-----~~-----~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .++|+|||+|+.|+.+|..|++.|.+  |+++++.+.+.   +     .+     ...+.....+.+++.|++++.++++
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            35799999999999999999999987  99999876531   0     00     1122223355677889999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.++.....  +.+.     ++..+.+|.+++|+|.+|....
T Consensus        89 ~~id~~~~~--v~~~-----~g~~~~~d~lvlAtG~~~~~~~  123 (415)
T 3lxd_A           89 VSLDPAAHT--VKLG-----DGSAIEYGKLIWATGGDPRRLS  123 (415)
T ss_dssp             EEEETTTTE--EEET-----TSCEEEEEEEEECCCEECCCCB
T ss_pred             EEEECCCCE--EEEC-----CCCEEEeeEEEEccCCccCCCC
Confidence            999765544  3333     5578999999999998887653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.16  E-value=1.2e-06  Score=88.33  Aligned_cols=56  Identities=13%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhcC-cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          255 GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       255 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      ..+.+.+.+.+++.| ++++++++|++|+.+++++.+++.     +++++.+|.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~-----~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTAR-----DGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEET-----TCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEEC-----CCCEEEcCEEEECCCHH
Confidence            366777788888888 999999999999887777777654     45579999999999853

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.16  E-value=5.5e-06  Score=82.85  Aligned_cols=104  Identities=21%  Similarity=0.337  Sum_probs=68.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCc------CCC-CC------HHH-------HHHHHHHHHhcCcEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI------VPS-MD------GEI-------RKQFQRSLEKQKMKF  272 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~------~~~-~~------~~~-------~~~~~~~l~~~gv~~  272 (477)
                      ++|+|||+|+.|+.+|..|++.  |.+|+++++.+.+      ++. +.      .++       ........++.|+++
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~   83 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA   83 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence            6899999999999999999998  8999999998864      111 11      111       112222233579999


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +++++|++++.+++.+.+..  ..++....+.+|.+|+|+|.+|....
T Consensus        84 ~~~~~V~~id~~~~~v~~~~--~~~g~~~~~~~d~lviAtG~~p~~p~  129 (472)
T 3iwa_A           84 LVETRAHAIDRAAHTVEIEN--LRTGERRTLKYDKLVLALGSKANRPP  129 (472)
T ss_dssp             ECSEEEEEEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCS
T ss_pred             EECCEEEEEECCCCEEEEee--cCCCCEEEEECCEEEEeCCCCcCCCC
Confidence            99999999987776665542  22234458999999999999887653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.16  E-value=3.4e-06  Score=83.96  Aligned_cols=99  Identities=22%  Similarity=0.302  Sum_probs=68.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||++|+.+|..|++.|.+|+|+++.+.+...      .+                                 
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~~---------------------------------  211 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------YD---------------------------------  211 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------SC---------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------cC---------------------------------
Confidence            468999999999999999999999999999986543110      00                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+.+.+.+.+++.+++++.+ .+..++.+.+.+...+|+..++.+|.||+|+|.+|..
T Consensus       212 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          212 ----------SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             ----------HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence                      001112234455668888876 4555554445555334544679999999999998853

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.16  E-value=1.3e-05  Score=75.43  Aligned_cols=100  Identities=20%  Similarity=0.210  Sum_probs=75.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc----------------CCCC-----CHHHHHHHHHHHHhcCcEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI----------------VPSM-----DGEIRKQFQRSLEKQKMKFM  273 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~----------------~~~~-----~~~~~~~~~~~l~~~gv~~~  273 (477)
                      ..|+|||+|+.|+.+|..+++.|.+|+++++....                .+.+     .+++...+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            36999999999999999999999999999875421                0112     14567777888888899887


Q ss_pred             eCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       274 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .. .+.......+...+...     ++.++.+|.+|+|||.+|....
T Consensus        85 ~~-~v~~~~~~~~~~~~~~~-----~~~~~~~~~liiATG~~~~~~~  125 (314)
T 4a5l_A           85 TE-TIDHVDFSTQPFKLFTE-----EGKEVLTKSVIIATGATAKRMH  125 (314)
T ss_dssp             CC-CEEEEECSSSSEEEEET-----TCCEEEEEEEEECCCEEECCCC
T ss_pred             Ee-EEEEeecCCCceEEEEC-----CCeEEEEeEEEEcccccccccC
Confidence            54 45555555555555543     5678999999999999887654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.15  E-value=5e-06  Score=82.56  Aligned_cols=101  Identities=25%  Similarity=0.350  Sum_probs=69.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC------CCC------CHHHHHHHHHHH-HhcCcEEEeCceE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV------PSM------DGEIRKQFQRSL-EKQKMKFMLKTKV  278 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~------~~~------~~~~~~~~~~~l-~~~gv~~~~~~~v  278 (477)
                      .++|+|||+|+.|+.+|..|++.  +.+|+++++.+.+.      |.+      ..++.....+.+ ++.|+++++++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            36899999999999999999998  78999999887541      111      011112222333 6789999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.++.  +...+.+.    +...++.+|.+|+|+|.+|+...
T Consensus        83 ~~i~~--~~~~v~~~----~g~~~~~~d~lviAtG~~p~~p~  118 (449)
T 3kd9_A           83 IEVDT--GYVRVREN----GGEKSYEWDYLVFANGASPQVPA  118 (449)
T ss_dssp             EEECS--SEEEEECS----SSEEEEECSEEEECCCEEECCCS
T ss_pred             EEEec--CCCEEEEC----CceEEEEcCEEEECCCCCCCCCC
Confidence            99843  33444432    12258999999999999887543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.14  E-value=5.3e-06  Score=85.38  Aligned_cols=105  Identities=19%  Similarity=0.289  Sum_probs=78.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC-----------CCC-C--HHHHHHHHHHHHhcCcEEEeCce
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-----------PSM-D--GEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~-----------~~~-~--~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      .++|+|||||+.|+.+|..|++.  |.+|+++++.+.+.           ..+ +  ..+...+....++.|++++++++
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~  115 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE  115 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence            57899999999999999999998  88999999988641           010 1  11223345556678999999999


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      |++++.+++.+.+..  ..+++...+.+|.+|+|+|.+|....
T Consensus       116 V~~id~~~~~v~v~~--~~~g~~~~~~~d~lviAtG~~p~~p~  156 (588)
T 3ics_A          116 VVKINKEEKTITIKN--VTTNETYNEAYDVLILSPGAKPIVPS  156 (588)
T ss_dssp             EEEEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEEECCCCEEEEee--cCCCCEEEEeCCEEEECCCCCCCCCC
Confidence            999987777665542  22334458999999999999887643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.14  E-value=1.3e-06  Score=84.32  Aligned_cols=42  Identities=33%  Similarity=0.488  Sum_probs=39.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ++|++|||||++|+++|..|++.|.+|+|+|+++.+||.|..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence            379999999999999999999999999999999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.13  E-value=1.7e-05  Score=76.90  Aligned_cols=97  Identities=12%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++|+.+.+....     .+                                 
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-----~~---------------------------------  186 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL-----LH---------------------------------  186 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----SC---------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc-----cC---------------------------------
Confidence            4689999999999999999999999999999855431100     00                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+++++.+. +..+  +.+.+.+.+.+|  .++.+|.||+|+|.+|.
T Consensus       187 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          187 ----------PAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDG--EVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             ----------HHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEEC
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEECcCCCcC
Confidence                      0011223345567789988773 4444  344567777777  67999999999998875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.13  E-value=1.2e-05  Score=75.47  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=71.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC---c--------CCCC----CHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM----DGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~---~--------~~~~----~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...   .        .|.+    .+++.........+.+..+..+..+..
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            589999999999999999999999999987532   0        1211    245666667777788888887766655


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ....... .+. .     ++.++.+|.+|+|||.+|....
T Consensus        88 ~~~~~~~-~~~-~-----~~~~~~~d~liiAtGs~~~~~~  120 (312)
T 4gcm_A           88 EDKGEYK-VIN-F-----GNKELTAKAVIIATGAEYKKIG  120 (312)
T ss_dssp             EECSSCE-EEE-C-----SSCEEEEEEEEECCCEEECCCC
T ss_pred             eeeecce-eec-c-----CCeEEEeceeEEcccCccCcCC
Confidence            5433222 222 1     5678999999999998887643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.13  E-value=1.3e-05  Score=80.00  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+..         .     .                       +  
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~-----~-----------------------~--  209 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP---------Q-----G-----------------------D--  209 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------T-----S-----------------------C--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc---------c-----c-----------------------C--
Confidence            36899999999999999999999999999998543311         0     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEec-C--CceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTI-E--GGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~-~--g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+.+.+.+.+++.+++++.+ .+..++  .+.+.+... +  |+..++.+|.||+|+|.+|..
T Consensus       210 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          210 ----------PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             ----------HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence                      001122334566779998877 344443  344556654 5  644589999999999998853

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.13  E-value=2.6e-06  Score=82.07  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      |+.++||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            45678999999999999999999999999999999653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.12  E-value=4.5e-06  Score=82.99  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=76.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC--C---------CC---CH-HHHHHHHHHHHhcCcEEEeCceE
Q 011787          216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--P---------SM---DG-EIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~---------~~---~~-~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      +++|||+|+.|+.+|..|++.  |.+|+++++.+.+.  +         ..   ++ ++.....+.+++.|++++.++++
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            689999999999999999998  99999999887531  0         00   11 12122345667789999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ..++.+++.+.+.  +..++++.++.+|.+++|+|.+|....
T Consensus        82 ~~i~~~~~~v~v~--~~~~g~~~~~~~d~lviAtGs~p~~p~  121 (452)
T 2cdu_A           82 TNVDPETKTIKVK--DLITNEEKTEAYDKLIMTTGSKPTVPP  121 (452)
T ss_dssp             EEEEGGGTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEEcCCCEEEEE--ecCCCceEEEECCEEEEccCCCcCCCC
Confidence            9998766665544  222233678999999999999887653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.12  E-value=5e-06  Score=81.43  Aligned_cols=100  Identities=17%  Similarity=0.267  Sum_probs=72.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcC---CCCCHHHHHH-HHH-----HHHhcCcEEEeCceEEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIV---PSMDGEIRKQ-FQR-----SLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~---~~~~~~~~~~-~~~-----~l~~~gv~~~~~~~v~~i~  282 (477)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+.   +.+.+.+... ..+     .+++.|++++.+++++.++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   86 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   86 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence            4679999999999999999999987  499999887542   1112111110 000     3456799999999999997


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .+...  +++.     +++++.+|.+|+|+|.+|+...
T Consensus        87 ~~~~~--v~~~-----~g~~~~~d~lviAtG~~~~~~~  117 (408)
T 2gqw_A           87 PQAHT--VALS-----DGRTLPYGTLVLATGAAPRALP  117 (408)
T ss_dssp             TTTTE--EEET-----TSCEEECSEEEECCCEEECCCG
T ss_pred             CCCCE--EEEC-----CCCEEECCEEEECCCCCCCCCC
Confidence            65443  4433     4568999999999999887643

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.11  E-value=2e-06  Score=83.41  Aligned_cols=42  Identities=24%  Similarity=0.525  Sum_probs=39.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ++||+|||||++|+++|..|++.|++|+|+|+++.+||.|..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            479999999999999999999999999999999999998743

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.11  E-value=1.1e-05  Score=80.38  Aligned_cols=103  Identities=17%  Similarity=0.211  Sum_probs=74.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC-----CcEEEEEeCCCcCC---------CC----------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG-----SEVTVVEFAADIVP---------SM----------------------------  253 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g-----~~Vtli~~~~~~~~---------~~----------------------------  253 (477)
                      +|+|||+|+.|+.+|..|++.|     .+|+++++.+.+..         .+                            
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            6999999999999999999999     89999998874310         00                            


Q ss_pred             --------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEc---CCe--EEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          254 --------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS---GDG--VKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       254 --------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~--~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                                    ..++.+.+....++.++++.++++|++++..   ++.  +.+++.+. .+...++.+|.||+|+|.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g-~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNA-DGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEET-TSCEEEEEESEEEECCCC
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecC-CCceEEEEeCEEEECCCC
Confidence                          1233444555556668999999999999875   332  24544432 123348999999999999


Q ss_pred             CCCCC
Q 011787          315 TPFTA  319 (477)
Q Consensus       315 ~p~~~  319 (477)
                      .|...
T Consensus       191 ~p~~p  195 (463)
T 3s5w_A          191 TPRIP  195 (463)
T ss_dssp             EECCC
T ss_pred             CCCCc
Confidence            88754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.11  E-value=1.5e-06  Score=87.01  Aligned_cols=41  Identities=32%  Similarity=0.459  Sum_probs=38.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecCCCCCceeec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLN   84 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~   84 (477)
                      +||+|||||++|++||++|++.|.  +|+|+|+++.+||.+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t   45 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS   45 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence            699999999999999999999999  99999999999997643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.11  E-value=1.6e-05  Score=77.49  Aligned_cols=103  Identities=18%  Similarity=0.259  Sum_probs=76.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc------CCC------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI------VPS------------------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~------~~~------------------------------------  252 (477)
                      .+|+|||||+.|+.+|..|++.|.+|+++++.+..      ...                                    
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            36999999999999999999999999999987631      000                                    


Q ss_pred             -----------------CC-HHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          253 -----------------MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       253 -----------------~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                                       ++ ..+.+.+.+.+.+.|++++++++|++++.++ +.+.+++..  ++...++.+|+||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--~g~~~~~~a~~vV~AdG  160 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER--DGERLRLDCDYIAGCDG  160 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE--TTEEEEEECSEEEECCC
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEec--CCcEEEEEeCEEEECCC
Confidence                             01 2344556666777799999999999998753 456676632  22223799999999999


Q ss_pred             CCCCCC
Q 011787          314 RTPFTA  319 (477)
Q Consensus       314 ~~p~~~  319 (477)
                      ..+...
T Consensus       161 ~~S~vr  166 (394)
T 1k0i_A          161 FHGISR  166 (394)
T ss_dssp             TTCSTG
T ss_pred             CCcHHH
Confidence            887653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.11  E-value=2e-06  Score=86.90  Aligned_cols=43  Identities=40%  Similarity=0.529  Sum_probs=38.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ...+||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   53 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   53 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence            3468999999999999999999999999999999999999753

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.09  E-value=2.2e-06  Score=84.67  Aligned_cols=56  Identities=23%  Similarity=0.295  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEE-cCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                      .++.+.+.+.+++.|++++++++|++|.. +++++. +++.     +++++.||.||.+.++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~-----~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSS-----DGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEET-----TSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEEC-----CCcEEECCEEEECCCcc
Confidence            47888899999999999999999999987 555543 5543     45689999999999988

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.08  E-value=1.1e-05  Score=80.07  Aligned_cols=104  Identities=20%  Similarity=0.305  Sum_probs=75.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC--C---------CC-C-HHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--P---------SM-D-GEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~---------~~-~-~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ++++|||+|+.|+.+|..+++.  |.+|+++++.+.+.  +         .. + .++.....+.+++.|++++.++.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3699999999999999999998  89999999887531  1         00 1 1122223456777899999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .++.+++.+.+..  ..++...++.+|.+|+|+|.+|....
T Consensus        81 ~i~~~~~~v~~~~--~~~g~~~~~~~d~lviAtG~~p~~p~  119 (447)
T 1nhp_A           81 AIQPKEHQVTVKD--LVSGEERVENYDKLIISPGAVPFELD  119 (447)
T ss_dssp             EEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEeCCCCEEEEEe--cCCCceEEEeCCEEEEcCCCCcCCCC
Confidence            9977666555442  11223346999999999999887653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.08  E-value=2e-06  Score=86.10  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=38.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~   84 (477)
                      ++||+|||||++|++||++|++.|  .+|+|+|+++.+||.+..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~   47 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT   47 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence            589999999999999999999999  999999999999987544

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.08  E-value=1.9e-06  Score=86.33  Aligned_cols=43  Identities=28%  Similarity=0.432  Sum_probs=38.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ..+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t   57 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT   57 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeee
Confidence            4589999999999999999999999999999999999997543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.08  E-value=3e-06  Score=83.74  Aligned_cols=58  Identities=17%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      ..+.+.+.+.+++.|++++++++|++|..+++++.....     +++++.+|.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-----~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-----EGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-----TTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-----CCeEEECCEEEECCCCCcc
Confidence            477888888888899999999999999887777664333     4578999999999998874

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.07  E-value=4.2e-05  Score=76.82  Aligned_cols=101  Identities=19%  Similarity=0.221  Sum_probs=79.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-----------------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----------------------------------------  252 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-----------------------------------------  252 (477)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                         
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   91 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF   91 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence            457999999999999999999999999999986543100                                         


Q ss_pred             ------C-------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          253 ------M-------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       253 ------~-------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                            .       ...+.+.+.+.+++.|+++++++++++++.+++++.+++.+. ++ ..++.+|+||.|.|...
T Consensus        92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~-~g-~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGP-DG-PRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECS-SC-EEEEEEEEEEECCCTTC
T ss_pred             ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcC-CC-cEEEEeCEEEEccCccc
Confidence                  0       023555666777778999999999999998888888877632 12 35799999999999654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.07  E-value=3e-06  Score=84.91  Aligned_cols=43  Identities=30%  Similarity=0.449  Sum_probs=39.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~   84 (477)
                      .++||+|||||++|+++|..|++.| .+|+|+|+++.+||.+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            4589999999999999999999998 799999999999998754

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.06  E-value=2.7e-05  Score=79.12  Aligned_cols=100  Identities=23%  Similarity=0.322  Sum_probs=79.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--------------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------------------------------------------  250 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------------------------------------------  250 (477)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+...                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            579999999999999999999999999999875320                                            


Q ss_pred             -------------------------CC----C-CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC----eEEEEEeecC
Q 011787          251 -------------------------PS----M-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD----GVKLTLEPAA  296 (477)
Q Consensus       251 -------------------------~~----~-~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~----~~~v~~~~~~  296 (477)
                                               +.    + ...+...+.+.+++.|++++++++|++++.+++    ++.+++.+..
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                                     00    0 123555667777788999999999999998887    8888776421


Q ss_pred             CCceEEEEcCEEEEeecCCC
Q 011787          297 GGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       297 ~~~~~~i~~D~vi~a~G~~p  316 (477)
                        ...++.+|+||.|.|...
T Consensus       166 --~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          166 --GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             --EEEEEEEEEEEECCCTTC
T ss_pred             --CeEEEEeCEEEECCCCcc
Confidence              147899999999999754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.05  E-value=4.5e-05  Score=76.68  Aligned_cols=100  Identities=19%  Similarity=0.281  Sum_probs=78.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC------------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------------------------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------------------------------------------  252 (477)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   91 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFG   91 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccc
Confidence            46999999999999999999999999999986542100                                          


Q ss_pred             -CC-----------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          253 -MD-----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       253 -~~-----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                       .+           ..+.+.+.+.+++.|++++++++|++++.+++++.+++.+. ++ ..++.+|+||.|.|...
T Consensus        92 ~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~-~g-~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           92 VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGP-EG-KHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEET-TE-EEEEEESEEEECCCTTC
T ss_pred             cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcC-CC-CEEEEeCEEEECCCcch
Confidence             00           23455566777778999999999999998888888887642 11 34799999999999654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.05  E-value=3e-06  Score=85.41  Aligned_cols=45  Identities=31%  Similarity=0.447  Sum_probs=40.4

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ++...+||+|||||++|++||..|++.|.+|+|+|+++.+||.+.
T Consensus        29 ~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           29 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence            344568999999999999999999999999999999999999653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=1.9e-05  Score=78.59  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=67.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.         |.                            ++  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~~--  210 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL---------SG----------------------------FE--  210 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------TT----------------------------SC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc---------cc----------------------------cC--
Confidence            4789999999999999999999999999999854431         10                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEec-CCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+...+++.+++++.+ .+..++  .+.+.+... +|...++.+|.||+|+|.+|.
T Consensus       211 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          211 ----------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence                      001122334556779998887 344443  334555543 333468999999999999885

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.03  E-value=5e-05  Score=77.73  Aligned_cols=101  Identities=31%  Similarity=0.385  Sum_probs=77.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------  251 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------------------  251 (477)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+....                                          
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            46899999999999999999999999999998732100                                          


Q ss_pred             ---------------------CCC-HHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEE
Q 011787          252 ---------------------SMD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVV  308 (477)
Q Consensus       252 ---------------------~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~i~~D~v  308 (477)
                                           .++ ..+...+.+.+++.|++++.+++|+++..+ ++.+.+++.+  ++...++.+|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~--~G~~~~i~AdlV  180 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRR--GGESVTVESDFV  180 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEE--TTEEEEEEESEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEec--CCceEEEEcCEE
Confidence                                 001 235566677778899999999999999875 4456676653  233368999999


Q ss_pred             EEeecCCC
Q 011787          309 LVSAGRTP  316 (477)
Q Consensus       309 i~a~G~~p  316 (477)
                      |.|+|..+
T Consensus       181 V~AdG~~S  188 (591)
T 3i3l_A          181 IDAGGSGG  188 (591)
T ss_dssp             EECCGGGC
T ss_pred             EECCCCcc
Confidence            99999765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.03  E-value=2.2e-05  Score=80.15  Aligned_cols=99  Identities=15%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-------------------------------------C-----C
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------------------------------------P-----S  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-------------------------------------~-----~  252 (477)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...                                     .     .
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            469999999999999999999999999999754321                                     0     0


Q ss_pred             C----------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCce-EEEEcCEEEEeecCC
Q 011787          253 M----------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK-TILEADVVLVSAGRT  315 (477)
Q Consensus       253 ~----------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~-~~i~~D~vi~a~G~~  315 (477)
                      +                ...+.+.+.+.+++.|++++++++|++++.+++++.+++..   .++ +++.+|+||.|.|..
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~---~~G~~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAG---PSGPYPVRARYGVGCDGGR  206 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEE---TTEEEEEEESEEEECSCSS
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEe---CCCcEEEEeCEEEEcCCCC
Confidence            0                12456667777777899999999999999888888887742   145 689999999999965


Q ss_pred             C
Q 011787          316 P  316 (477)
Q Consensus       316 p  316 (477)
                      .
T Consensus       207 S  207 (570)
T 3fmw_A          207 S  207 (570)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.03  E-value=2.3e-05  Score=78.51  Aligned_cols=99  Identities=17%  Similarity=0.269  Sum_probs=68.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+...      .                               +  
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~-------------------------------~--  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------M-------------------------------D--  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------S-------------------------------C--
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc------c-------------------------------C--
Confidence            468999999999999999999999999999986543210      0                               0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec----CCEEEEEec---CCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS----PSEVSVDTI---EGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~----~~~~~v~~~---~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+...+++.+++++.+ .+..++    .+...+...   +|...++.+|.||+|+|.+|..
T Consensus       224 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          224 ----------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence                      001122334566779998877 344443    334555544   2334689999999999988853

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.03  E-value=4.3e-05  Score=78.27  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC---------------------------------------CC-
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------------------------------MD-  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------------------------------------~~-  254 (477)
                      .+|+|||+|..|+.+|..+++.|.+|+++++.+.+...                                       .+ 
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            57999999999999999999999999999987653210                                       00 


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-
Q 011787          255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-  285 (477)
Q Consensus       255 ------------------------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-  285 (477)
                                                                      ..+...+.+.+++.||+++++++|+++..++ 
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                            1334455667778899999999999998766 


Q ss_pred             CeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          286 DGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       286 ~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +++. +.+.+ .++...++.+|.||+|+|...
T Consensus       287 g~v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          287 GTVKGILVKG-MYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             SCEEEEEEEE-TTTEEEEEECSEEEECCCCCT
T ss_pred             CeEEEEEEEe-CCCcEEEEECCeEEEeCCCcc
Confidence            5544 55442 123334799999999999754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.00  E-value=3.9e-05  Score=78.25  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=73.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-cC--C---------------------C------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IV--P---------------------S------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~--~---------------------~------------------  252 (477)
                      -.|+|||||+.|+++|..+++.|.+|.++++... +.  +                     .                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999998631 10  0                     0                  


Q ss_pred             ------------CC-HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          253 ------------MD-GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       253 ------------~~-~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                                  .| ..+...+.+.+++ .|++++ +++|+.+..+++.+ .+.+.     ++..+.+|.||+|+|..++
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~-----dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQ-----MGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEET-----TSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEEC-----CCCEEECCEEEEcCCCCcc
Confidence                        01 1244556667777 699994 67999998776665 35543     4578999999999998765


Q ss_pred             C
Q 011787          318 T  318 (477)
Q Consensus       318 ~  318 (477)
                      .
T Consensus       183 ~  183 (651)
T 3ces_A          183 G  183 (651)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.00  E-value=3.6e-05  Score=76.67  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+.         +.                            ++  
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l---------~~----------------------------~~--  206 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL---------FQ----------------------------FD--  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------TT----------------------------SC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc---------cc----------------------------cC--
Confidence            3689999999999999999999999999999854321         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+. +..++  .+...+.+.+|+. ++.+|.||+|+|.+|..
T Consensus       207 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~-~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          207 ----------PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTR-LEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCE-EEEESEEEECSCEEESC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcE-EEEcCEEEECCCCCcCC
Confidence                      0011122345566788888763 44443  3456777778732 79999999999998853

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.99  E-value=1.4e-05  Score=79.31  Aligned_cols=97  Identities=19%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+..         .                            ++  
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~----------------------------~~--  207 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP---------S----------------------------FD--  207 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------T----------------------------SC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh---------h----------------------------hh--
Confidence            46899999999999999999999999999998543210         0                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC---CEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+ .+..++.   ....+.+.+|  .++.+|.||+|+|.+|..
T Consensus       208 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          208 ----------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             ----------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEESC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCC--cEEEcCEEEECCCCCcCC
Confidence                      001112234455668888876 3444432   2366777777  579999999999998853

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.99  E-value=2.4e-05  Score=76.29  Aligned_cols=101  Identities=25%  Similarity=0.361  Sum_probs=72.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------C-CHH---H-------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------M-DGE---I-------------------------  257 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------~-~~~---~-------------------------  257 (477)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++.+.+...       + +..   .                         
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~  105 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK  105 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence            468999999999999999999999999999987643210       0 000   0                         


Q ss_pred             ---------------------HHHHHHHHHhc--CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          258 ---------------------RKQFQRSLEKQ--KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       258 ---------------------~~~~~~~l~~~--gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                                           ...+.+.|.+.  +++++++++|++++.+++++.+++.     +++++.+|.||.|.|.
T Consensus       106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFE-----NKPSETADLVILANGG  180 (398)
T ss_dssp             SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEET-----TSCCEEESEEEECSCT
T ss_pred             CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEEC-----CCcEEecCEEEECCCc
Confidence                                 01112222221  3578889999999888777777765     4557999999999998


Q ss_pred             CCCCC
Q 011787          315 TPFTA  319 (477)
Q Consensus       315 ~p~~~  319 (477)
                      .+...
T Consensus       181 ~S~vR  185 (398)
T 2xdo_A          181 MSKVR  185 (398)
T ss_dssp             TCSCC
T ss_pred             chhHH
Confidence            87654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.97  E-value=6.4e-06  Score=81.27  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=36.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC---CCCceeeccCccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG---ALGGTCLNVGCIP   89 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~---~~GG~~~~~~~~p   89 (477)
                      ++||+||||||+|+++|..|++.|++|+|+|+..   ..+|.+....|.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~   71 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHN   71 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhcc
Confidence            3799999999999999999999999999999965   1234444444443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.97  E-value=2.3e-05  Score=74.76  Aligned_cols=95  Identities=14%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHH---cCCcEEEEEeCCCcCC--------------------C---CCH---HHH-------
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAADIVP--------------------S---MDG---EIR-------  258 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~---~g~~Vtli~~~~~~~~--------------------~---~~~---~~~-------  258 (477)
                      .+|+|||+|.+|+-+|..|++   .|.+|+++++++.+..                    .   .+.   .+.       
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            369999999999999999999   8999999997643210                    0   000   111       


Q ss_pred             -------------------------------HHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 011787          259 -------------------------------KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV  307 (477)
Q Consensus       259 -------------------------------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~  307 (477)
                                                     ..+....++.|++++++++|++++.+++++.+++.     +++.+.+|.
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~-----~g~~~~ad~  156 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQ-----TGSPEQFDL  156 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEES-----SSCCEEESE
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEEC-----CCCEEEcCE
Confidence                                           11122223348999999999999988888877764     345689999


Q ss_pred             EEEeecC
Q 011787          308 VLVSAGR  314 (477)
Q Consensus       308 vi~a~G~  314 (477)
                      ||+|+..
T Consensus       157 vV~A~p~  163 (342)
T 3qj4_A          157 IVLTMPV  163 (342)
T ss_dssp             EEECSCH
T ss_pred             EEECCCH
Confidence            9999873

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.97  E-value=3.2e-05  Score=77.10  Aligned_cols=98  Identities=23%  Similarity=0.312  Sum_probs=67.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.         |.                            ++  
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~~--  211 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL---------PN----------------------------ED--  211 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------TT----------------------------SC--
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc---------cc----------------------------cC--
Confidence            4689999999999999999999999999999854331         10                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEec-CCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+++++.+ .+..+.  .+.+.+... +|+..++.+|.||+|+|.+|.
T Consensus       212 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          212 ----------ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             ----------HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             ----------HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence                      001122334455668888876 344443  223555544 554568999999999999885

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.96  E-value=5.4e-05  Score=77.17  Aligned_cols=98  Identities=19%  Similarity=0.334  Sum_probs=73.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-cC-----C------------------C-----------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IV-----P------------------S-----------------  252 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~-----~------------------~-----------------  252 (477)
                      .-.|+|||||..|+++|..+++.|.+|.++++.+. +.     +                  .                 
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~  100 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN  100 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence            45799999999999999999999999999998631 10     0                  0                 


Q ss_pred             -------------CC-HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          253 -------------MD-GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       253 -------------~~-~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                                   .| ..+...+.+.+++ .|++++ +..|+.+..+++.+. +.+.     ++..+.+|.||+|+|..+
T Consensus       101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~-----~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVR-----SGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEET-----TSCEEEEEEEEECCTTCB
T ss_pred             cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEEC-----CCcEEEeCEEEECcCCCC
Confidence                         01 1344556667776 499986 558999887777765 5543     456899999999999875


Q ss_pred             C
Q 011787          317 F  317 (477)
Q Consensus       317 ~  317 (477)
                      +
T Consensus       175 ~  175 (641)
T 3cp8_A          175 N  175 (641)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.96  E-value=8e-06  Score=77.46  Aligned_cols=49  Identities=27%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC------CceeeccCccCch
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL------GGTCLNVGCIPSK   91 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~------GG~~~~~~~~p~~   91 (477)
                      ++||+|||||+||+.||..|++.|.+|+|+|++...      .|.+....|.|+.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSi   55 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSL   55 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSCCSSCTTCCCSCCEE
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccccCCCccccccCcCC
Confidence            379999999999999999999999999999987632      2444555566654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.96  E-value=3.8e-05  Score=77.31  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+.         |.                            ++  
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~d--  216 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL---------RK----------------------------FD--  216 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC---------TT----------------------------SC--
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC---------cc----------------------------cc--
Confidence            4689999999999999999999999999999854331         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC---CEEEEEecCCceEE-EEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTV-VKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~v~~~~g~~~~-i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+|+++.+. +..++.   ....+.+.+|  .+ +.+|.||+|+|.+|..
T Consensus       217 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          217 ----------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG--RIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS--CEEEEESEEEECCCBCCTT
T ss_pred             ----------hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCC--cEEEECCEEEECCCCCcCC
Confidence                      0011223455667789988773 444432   2366777777  44 9999999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.96  E-value=5e-05  Score=76.67  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+..|..+++.|.+|+|+++...+-+                                      ++  
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~--------------------------------------~D--  262 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG--------------------------------------FD--  262 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT--------------------------------------SC--
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc--------------------------------------cc--
Confidence            46899999999999999999999999999987432210                                      00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEE--ecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKF--ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+...+++.++++..+. +..  .....+.+...++  ..+.+|.|++|+|-+|.
T Consensus       263 ----------~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~--~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          263 ----------QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDK--TSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEES
T ss_pred             ----------hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCC--CeEEEEEEEEcccccCC
Confidence                      0122233456677899888773 222  3456677777776  56789999999999885

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.96  E-value=1.2e-05  Score=80.68  Aligned_cols=105  Identities=13%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--C--------CCCH-HHHHHHHHHH--HhcCcEEEeCceEEEE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P--------SMDG-EIRKQFQRSL--EKQKMKFMLKTKVVGV  281 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~--------~~~~-~~~~~~~~~l--~~~gv~~~~~~~v~~i  281 (477)
                      ++|+|||||+.|+.+|..|.+.+.+||+|++++.+.  |        .+++ ++...+.+.+  ++.+++++. .++++|
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~-~~v~~I  121 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYE-AEATSI  121 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEE-EEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEE-EEEEEE
Confidence            479999999999999999998899999999987541  1        1121 1111122322  234788874 578999


Q ss_pred             EEcCCeEEEEEee-------------cCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          282 DLSGDGVKLTLEP-------------AAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       282 ~~~~~~~~v~~~~-------------~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +.+...+.+....             ...+++.++++|.+|+|+|.+|+...
T Consensus       122 D~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~  173 (502)
T 4g6h_A          122 NPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG  173 (502)
T ss_dssp             EGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT
T ss_pred             EhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC
Confidence            8877776654311             11245789999999999999998754

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.95  E-value=5.4e-05  Score=77.39  Aligned_cols=102  Identities=19%  Similarity=0.258  Sum_probs=75.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC---------------------------------------C--
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------------------------------M--  253 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~---------------------------------------~--  253 (477)
                      ..|+|||+|..|+.+|..+++.|.+|+++++.+.+...                                       .  
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            47999999999999999999999999999987643110                                       0  


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-
Q 011787          254 -----------------------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-  285 (477)
Q Consensus       254 -----------------------------------------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-  285 (477)
                                                                     ...+...+.+.+++.|++++++++|+++..++ 
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  281 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  281 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence                                                           11233455667778899999999999998776 


Q ss_pred             CeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          286 DGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       286 ~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      +++. +.+.+ .++....+.+|.||+|+|-...
T Consensus       282 g~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          282 HSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             SBEEEEEEEE-TTTEEEEEEEEEEEECCCCCTT
T ss_pred             CcEEEEEEEe-CCCcEEEEEcCEEEEecCCccc
Confidence            6554 55442 2233347999999999996554

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.95  E-value=6.3e-05  Score=70.78  Aligned_cols=163  Identities=15%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcCC-------C--------------------C-----------C
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP-------S--------------------M-----------D  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~-------~--------------------~-----------~  254 (477)
                      ..|+|||+|+.|+.+|..|++.  |.+|+++++.+.+..       .                    +           .
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~  159 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA  159 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence            4799999999999999999997  999999998764320       0                    0           1


Q ss_pred             HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcC-----------------C--eEE-EEEeec---CC------CceEEEE
Q 011787          255 GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSG-----------------D--GVK-LTLEPA---AG------GEKTILE  304 (477)
Q Consensus       255 ~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~-----------------~--~~~-v~~~~~---~~------~~~~~i~  304 (477)
                      .++.+.+.+.+++ .|++++.++.+.++..++                 +  ++. +.+...   ..      .+..++.
T Consensus       160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~  239 (344)
T 3jsk_A          160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN  239 (344)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence            2334555666666 599999999999987654                 2  232 332210   11      2456899


Q ss_pred             cCEEEEeecCCCCCCCCCcc---cccee--ecCCCCeecC-------CCCCCCCCCeEEecccC----CC----CCchhH
Q 011787          305 ADVVLVSAGRTPFTAGLGLD---KIGVE--TDKMGRIPVN-------ERFATNIPGVYAIGDVI----PG----PMLAHK  364 (477)
Q Consensus       305 ~D~vi~a~G~~p~~~~l~~~---~~gl~--~~~~g~i~vd-------~~l~t~~~~vya~GD~~----~~----~~~~~~  364 (477)
                      ++.||.|+|.....-.+..+   ..++.  +......+++       ++-+--+|++|++|=.+    +.    |.+.. 
T Consensus       240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~-  318 (344)
T 3jsk_A          240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGPTFGA-  318 (344)
T ss_dssp             CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCSCCHH-
T ss_pred             cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCcccce-
Confidence            99999999987653211111   12221  1111111111       11112379999999876    33    33322 


Q ss_pred             HHHHHHHHHHHHcC
Q 011787          365 AEEDGVACVEFLAG  378 (477)
Q Consensus       365 A~~~g~~aa~~i~~  378 (477)
                      =...|+.||+.|+.
T Consensus       319 m~~sg~~~a~~~~~  332 (344)
T 3jsk_A          319 MALSGVKAAHEAIR  332 (344)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeecCHHHHHHHHH
Confidence            23567888877753

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.94  E-value=0.00017  Score=67.48  Aligned_cols=163  Identities=17%  Similarity=0.195  Sum_probs=99.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcCC-C-------------------------------------CC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP-S-------------------------------------MD  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~-~-------------------------------------~~  254 (477)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+.... .                                     ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            4799999999999999999998  999999998665420 0                                     01


Q ss_pred             HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcC----C--eEE-EEEeec---------CCCceEEEEc------------
Q 011787          255 GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSG----D--GVK-LTLEPA---------AGGEKTILEA------------  305 (477)
Q Consensus       255 ~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~----~--~~~-v~~~~~---------~~~~~~~i~~------------  305 (477)
                      .++...+.+.+.+ .|++++.++++.++..++    +  ++. +.+...         ...+...+.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            2334455565666 499999999999997763    3  333 333210         1124568999            


Q ss_pred             ---CEEEEeecCCCCCCCCCccccceeecCCCC------eecC-------CCCCC--CCCCeEEecccC----CCCCc--
Q 011787          306 ---DVVLVSAGRTPFTAGLGLDKIGVETDKMGR------IPVN-------ERFAT--NIPGVYAIGDVI----PGPML--  361 (477)
Q Consensus       306 ---D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~------i~vd-------~~l~t--~~~~vya~GD~~----~~~~~--  361 (477)
                         +.||.|+|.......+..... ..++..+.      ...+       +..+.  -+|++|++|-.+    +.|..  
T Consensus       226 ~~~~~VV~ATG~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~  304 (326)
T 2gjc_A          226 QKHGVILSTTGHDGPFGAFCAKRI-VDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGP  304 (326)
T ss_dssp             TTCCEEEECCCCC--CCSHHHHHH-HHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCS
T ss_pred             ccCCEEEECcCCCchHHHHHHhhc-cccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCCh
Confidence               999999998765433211111 11111111      1111       11122  689999999877    33331  


Q ss_pred             hhHH-HHHHHHHHHHHcC
Q 011787          362 AHKA-EEDGVACVEFLAG  378 (477)
Q Consensus       362 ~~~A-~~~g~~aa~~i~~  378 (477)
                      .-.+ ...|+.||+.|+.
T Consensus       305 ~fg~m~~sg~~~a~~~~~  322 (326)
T 2gjc_A          305 TFGAMALSGVHAAEQILK  322 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHH
Confidence            1223 3567888877753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.93  E-value=1.8e-05  Score=79.19  Aligned_cols=104  Identities=15%  Similarity=0.177  Sum_probs=73.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC--CC----------C-CHHHHHHHHHHH-HhcCcEEEeCceE
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--PS----------M-DGEIRKQFQRSL-EKQKMKFMLKTKV  278 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~--~~----------~-~~~~~~~~~~~l-~~~gv~~~~~~~v  278 (477)
                      .+++|||+|+.|+.+|..|++.  |.+|+++++.+...  +.          . ..++.....+.+ ++.|++++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5799999999999999999986  88999999877531  00          0 111111223444 3449999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      ..++.+++.+.+..  ..+++..++.+|.+|+|+|.+|+...
T Consensus       117 ~~i~~~~~~v~v~~--~~~g~~~~~~~d~lviAtG~~p~~p~  156 (480)
T 3cgb_A          117 TKVDTEKKIVYAEH--TKTKDVFEFSYDRLLIATGVRPVMPE  156 (480)
T ss_dssp             EEEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCCC
T ss_pred             EEEECCCCEEEEEE--cCCCceEEEEcCEEEECCCCcccCCC
Confidence            99987666665542  11222237999999999999887643

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.93  E-value=7.5e-05  Score=75.91  Aligned_cols=98  Identities=22%  Similarity=0.320  Sum_probs=73.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC-cC--CC---------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IV--PS---------------------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~-~~--~~---------------------------------------  252 (477)
                      -.|+|||||+.|+++|..+++.|.+|.++++... +.  +.                                       
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4699999999999999999999999999998631 10  00                                       


Q ss_pred             ------------CC-HHHHHHHHHHHHh-cCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          253 ------------MD-GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       253 ------------~~-~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                                  .| ..+...+.+.+++ .|++++ +.+|+++..+++.+. +.+.     ++..+.+|.||+|+|..++
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~-----dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTN-----LGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEET-----TSCEEECSEEEECCTTCBT
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEEC-----CCcEEEeCEEEEccCCCcc
Confidence                        00 1234556667777 599994 679999987777654 5543     4568999999999998765


Q ss_pred             C
Q 011787          318 T  318 (477)
Q Consensus       318 ~  318 (477)
                      .
T Consensus       182 ~  182 (637)
T 2zxi_A          182 G  182 (637)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.92  E-value=3.7e-05  Score=76.84  Aligned_cols=100  Identities=19%  Similarity=0.313  Sum_probs=67.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+...        .                            ++  
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~----------------------------~~--  219 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--------G----------------------------ID--  219 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--------S----------------------------CC--
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--------c----------------------------cC--
Confidence            368999999999999999999999999999986443110        0                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCE-EEEEec---CCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSE-VSVDTI---EGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~-~~v~~~---~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+. +..++  .+. +.+...   ++...++.+|.||+|+|.+|..
T Consensus       220 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          220 ----------MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence                      0011223345667799988773 44443  222 555431   2223789999999999998853

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.92  E-value=9e-05  Score=74.35  Aligned_cols=97  Identities=19%  Similarity=0.220  Sum_probs=65.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+...      .        .                         
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------~--------d-------------------------  214 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL------Q--------D-------------------------  214 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC------C--------C-------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------C--------C-------------------------
Confidence            468999999999999999999999999999986543110      0        0                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEec--CCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTI--EGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~--~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+.+.+.+.+++. ++++.+ .+..+  +.+.+.+...  +|+..++.+|.||+|+|.+|.
T Consensus       215 ----------~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          215 ----------EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             ----------HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             ----------HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence                      00111223344445 777655 33333  3344555553  565578999999999999885

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.91  E-value=6.1e-05  Score=76.56  Aligned_cols=99  Identities=23%  Similarity=0.334  Sum_probs=72.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--------C-------------CCC----------------HHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P-------------SMD----------------GEI  257 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------~-------------~~~----------------~~~  257 (477)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        |             .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999876431        1             011                234


Q ss_pred             HHHHHHHHHhcC--cEEEeCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeecC--CCCC
Q 011787          258 RKQFQRSLEKQK--MKFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAGR--TPFT  318 (477)
Q Consensus       258 ~~~~~~~l~~~g--v~~~~~~~v~~i~~~~~--~~~v~~~~~~~~~~~~i~~D~vi~a~G~--~p~~  318 (477)
                      .+.+....++.+  +.+.++++|.+++.+++  ...+++.     +++++.+|.||+|+|.  .|..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~-----~G~~~~ad~vV~AtG~~s~p~~  158 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN-----HGDRIRARYLIMASGQLSVPQL  158 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET-----TCCEEEEEEEEECCCSCCCCCC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEEC-----CCCEEEeCEEEECcCCCCCCCC
Confidence            445555555554  67889999999987653  4556654     4568999999999995  4544

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.91  E-value=9.7e-05  Score=75.54  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=75.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC--------------------C--------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS--------------------M--------------------  253 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~--------------------~--------------------  253 (477)
                      ..+|+|||+|..|+.+|..+++.|.+|+++++.+.+...                    .                    
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            457999999999999999999999999999987643210                    0                    


Q ss_pred             ------------------------------------------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcC
Q 011787          254 ------------------------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG  285 (477)
Q Consensus       254 ------------------------------------------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~  285 (477)
                                                                      ...+...+.+.+++.||+++++++++++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                            01233455667778899999999999997665


Q ss_pred             -CeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          286 -DGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       286 -~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                       +++. +.+.+ .++....+.+|.||+|+|..++
T Consensus       286 ~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          286 SGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             -CCEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred             CCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence             5543 55442 2233357999999999997664

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.90  E-value=4.1e-05  Score=76.41  Aligned_cols=98  Identities=23%  Similarity=0.341  Sum_probs=66.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+.         |.                            ++  
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~d--  214 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA---------PT----------------------------LD--  214 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------TT----------------------------SC--
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc---------cc----------------------------CC--
Confidence            4689999999999999999999999999999854331         10                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhCCeEEEEe-EEEEecC--CEEEEEec--CCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKG-YGKFISP--SEVSVDTI--EGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~--~~~~v~~~--~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+ ++.+++++.+ .+..++.  +.+.+.+.  +|+..++.+|.||+|+|.+|.
T Consensus       215 ----------~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          215 ----------EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             ----------HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred             ----------HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence                      00112234455 6779998876 4444432  23555544  554467999999999999885

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.88  E-value=5.2e-05  Score=76.02  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=69.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ..+++|||||+.|+.+|..|++.   |.+|+++++.+.+.         |.                            +
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l---------~~----------------------------~  229 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------RG----------------------------F  229 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------TT----------------------------S
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc---------cc----------------------------c
Confidence            46899999999999999999999   99999999854321         10                            0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC---CEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                      +            ..+...+...+++.+++++.+ .+..+..   ..+.|.+.+|  .++.+|.||+|+|.+|..
T Consensus       230 d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          230 D------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             C------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEESC
T ss_pred             C------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCC--cEEEcCEEEEccCCCcCc
Confidence            0            001222344566789999887 3444432   2367777777  579999999999998853

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.88  E-value=4.3e-05  Score=77.33  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=68.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||..|+.+|..|++.|.+|+++++.+.+..         .                            ++   
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~---------~----------------------------~~---  254 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL---------I----------------------------KD---  254 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT---------C----------------------------CS---
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc---------c----------------------------cc---
Confidence            7899999999999999999999999999998543210         0                            00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CE----EEEEecCCceE-EEEecEEEEccCCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SE----VSVDTIEGGNT-VVKGKNIIIATGSDVKS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~----~~v~~~~g~~~-~i~~d~lvlAtG~~~~~  190 (477)
                               ..+...+...+++.+++++.+ .+..+..  +.    +.|.+.+|  . ++.+|.||+|+|.+|..
T Consensus       255 ---------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G--~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          255 ---------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG--EMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             ---------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE--EEEEECSCEEECCCCEECC
T ss_pred             ---------HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCC--cEEEEcCEEEECcCCccCC
Confidence                     001222345566779998876 4444432  33    56777776  4 89999999999998864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.88  E-value=5.3e-05  Score=76.10  Aligned_cols=97  Identities=15%  Similarity=0.138  Sum_probs=69.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      ..+++|||||+.|+.+|..|++.   |.+|+|+++.+.+-         |.                            +
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l---------~~----------------------------~  233 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL---------RG----------------------------F  233 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC---------TT----------------------------S
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc---------cc----------------------------c
Confidence            36899999999999999999999   99999999854321         00                            0


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC---CEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~---~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                      +            ..+...+.+.+++.+|+++.+ .+..+..   ....|.+.+|  .++.+|.||+|+|.+|..
T Consensus       234 d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          234 D------------ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG--KTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             C------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEECC
T ss_pred             C------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCC--cEEEcCEEEECCCCcccc
Confidence            0            001122344566789999887 3444432   2366777777  589999999999998853

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.87  E-value=5.3e-05  Score=75.79  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=67.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+.         |.                            ++  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~d--  225 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL---------RK----------------------------FD--  225 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC---------TT----------------------------SC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc---------cc----------------------------cC--
Confidence            4689999999999999999999999999999854321         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC--CE--EEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SE--VSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~--~~--~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+ .+..+..  +.  ..+.+.+|+ .++.+|.||+|+|.+|..
T Consensus       226 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~-~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          226 ----------ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSK-SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             ----------HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSC-EEEEESEEEECSCEEECC
T ss_pred             ----------HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCc-EEEEcCEEEECCCCCCcc
Confidence                      001112234455668888877 3444432  22  567776663 579999999999998864

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.85  E-value=7.5e-05  Score=72.89  Aligned_cols=96  Identities=18%  Similarity=0.239  Sum_probs=68.9

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------CCHHHH------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------MDGEIR------------------------------  258 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------~~~~~~------------------------------  258 (477)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...       +.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            6999999999999999999999999999987654211       111110                              


Q ss_pred             -----------------------------HHHHHHHHh-cCcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCE
Q 011787          259 -----------------------------KQFQRSLEK-QKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADV  307 (477)
Q Consensus       259 -----------------------------~~~~~~l~~-~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~  307 (477)
                                                   ..+.+.|.+ .+..+.+++++++++..+ +++.+++.     +++++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~-----dG~~~~adl  157 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFA-----DGSHENVDV  157 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEET-----TSCEEEESE
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEEC-----CCCEEEeeE
Confidence                                         112232322 244577889999997654 46777775     667899999


Q ss_pred             EEEeecCCC
Q 011787          308 VLVSAGRTP  316 (477)
Q Consensus       308 vi~a~G~~p  316 (477)
                      ||-|-|...
T Consensus       158 vVgADG~~S  166 (412)
T 4hb9_A          158 LVGADGSNS  166 (412)
T ss_dssp             EEECCCTTC
T ss_pred             EEECCCCCc
Confidence            999999764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.85  E-value=1.1e-05  Score=80.09  Aligned_cols=89  Identities=22%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-------CCC--CCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-------VPS--MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-------~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       .|.  ++.++.....+.+++.|+++++++.+.    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            3578999999999999999999999999999998765       232  466777778888999999999987652    


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT  315 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~  315 (477)
                        ..  +++.     + ..+.+|.|++|+|..
T Consensus       197 --~~--v~~~-----~-~~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 --RD--ASLP-----E-LRRKHVAVLVATGVY  218 (456)
T ss_dssp             --TT--BCHH-----H-HHSSCSEEEECCCCC
T ss_pred             --cE--EEhh-----H-hHhhCCEEEEecCCC
Confidence              11  1111     1 235699999999986

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.84  E-value=1e-05  Score=80.87  Aligned_cols=43  Identities=26%  Similarity=0.432  Sum_probs=38.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceeec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLN   84 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~   84 (477)
                      ..+||+|||||++|+++|..|++.|. +|+|+|+++.+||.|..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~   46 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   46 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence            35799999999999999999999998 89999999999987643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.84  E-value=6.5e-05  Score=74.85  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------------------------------CCCHH-------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------------------------------SMDGE-------  256 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------------------------------~~~~~-------  256 (477)
                      .+++|||+|+.|+.+|..+++.|.+|+++++.+.+..                               .++..       
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            3699999999999999999999999999997665411                               11110       


Q ss_pred             ----HH--HHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEE--EEcCEEEEeecCCCCCCC
Q 011787          257 ----IR--KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTI--LEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       257 ----~~--~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~--i~~D~vi~a~G~~p~~~~  320 (477)
                          +.  ..+.+.+++.|++++.+ ++..++  .+.+.+...     +++.  +.+|.+|+|+|.+|....
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~~~~~V~~~-----~g~~~~~~~d~lviAtG~~p~~p~  148 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKD--PTHVIVKTD-----EGKEIEAETRYMIIASGAETAKLR  148 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--TTEEEEEET-----TSCEEEEEEEEEEECCCEEECCCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEec--CCeEEEEcC-----CCcEEEEecCEEEECCCCCccCCC
Confidence                01  33445566779999876 566664  455555543     3445  999999999999887653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.82  E-value=0.0001  Score=73.93  Aligned_cols=97  Identities=16%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++...+          |.                            ++  
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l----------~~----------------------------~d--  224 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL----------RG----------------------------FD--  224 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS----------TT----------------------------SC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc----------cc----------------------------CC--
Confidence            357999999999999999999999999999984211          00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe---cCCEEEEEecC---CceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIE---GGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~v~~~~---g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+.+.+...+++.+|+++.+. +..+   +.....+...+   |+..++.+|.||+|+|.+|.
T Consensus       225 ----------~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          225 ----------QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence                      0012223455677899998873 3333   33445554433   53346899999999998875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.82  E-value=0.00016  Score=72.41  Aligned_cols=102  Identities=19%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--------------------------------C----CCCHH--
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------------------------------P----SMDGE--  256 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--------------------------------~----~~~~~--  256 (477)
                      .+++|||+|+.|+.+|..+++.|.+|+++++.+.+.                                +    .++..  
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   86 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            469999999999999999999999999999865431                                0    01111  


Q ss_pred             ----------HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeec-------CCCceEEEEcCEEEEeecCCCCCC
Q 011787          257 ----------IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA-------AGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       257 ----------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~-------~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                                +...+.+.+++.|++++.++.+. +  +++.+.+...+.       .+++..++.+|.+|+|+|.+|...
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~  163 (482)
T 1ojt_A           87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-L--DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL  163 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-E--ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-c--cCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCC
Confidence                      11123455677899999887654 2  445566654311       011126799999999999998764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.81  E-value=9.4e-05  Score=74.24  Aligned_cols=99  Identities=23%  Similarity=0.336  Sum_probs=68.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+...      .                               +  
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~-------------------------------d--  238 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG------M-------------------------------D--  238 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS------S-------------------------------C--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc------C-------------------------------C--
Confidence            468999999999999999999999999999985543110      0                               0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecC---CceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIE---GGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~---g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+. +..+  +.+...+...+   |+..++.+|.||+|+|.+|..
T Consensus       239 ----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          239 ----------GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence                      0012223445667789988763 3333  23455555442   544789999999999998853

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.79  E-value=1.8e-05  Score=82.49  Aligned_cols=43  Identities=30%  Similarity=0.569  Sum_probs=39.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ...+||+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~  147 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  147 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            4568999999999999999999999999999999999998653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.79  E-value=5.7e-05  Score=75.97  Aligned_cols=97  Identities=19%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+...      .+                                 
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------~d---------------------------------  222 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY------ED---------------------------------  222 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC------SS---------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------cC---------------------------------
Confidence            468999999999999999999999999999985433110      00                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCceEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+ .+..+.  .+.+.+.+.+|  .++.+|.||+|+|.+|..
T Consensus       223 ----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          223 ----------ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDG--RTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTS--CEEEESEEEECCCEEECC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCC--cEEEcCEEEECCCCCcCC
Confidence                      001122334566778888876 344443  23366666666  679999999999998853

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.79  E-value=0.00014  Score=72.49  Aligned_cols=101  Identities=19%  Similarity=0.297  Sum_probs=68.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC--------------------------cCCC----------CC-HH
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD--------------------------IVPS----------MD-GE  256 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~--------------------------~~~~----------~~-~~  256 (477)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++...                          ..+.          .+ ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK   83 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence            35799999999999999999999999999998731                          0111          11 11


Q ss_pred             HHH-------H-----HHHHHHhc-CcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          257 IRK-------Q-----FQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       257 ~~~-------~-----~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +..       .     ..+.+++. |++++.+. +..+  +.+.+.+.+.   +++...+.+|.+|+|+|.+|+...
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~---~g~~~~~~~d~lviAtGs~p~~p~  154 (467)
T 1zk7_A           84 LLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFK--DDQSLTVRLN---EGGERVVMFDRCLVATGASPAVPP  154 (467)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEE--ETTEEEEEET---TSSEEEEECSEEEECCCEEECCCC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEc--cCCEEEEEeC---CCceEEEEeCEEEEeCCCCCCCCC
Confidence            111       1     12345556 99998764 5555  3455555543   122268999999999999887653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.78  E-value=8.6e-05  Score=74.09  Aligned_cols=99  Identities=19%  Similarity=0.295  Sum_probs=69.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------------------------------------CCH-H
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------------MDG-E  256 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------------------------------------~~~-~  256 (477)
                      .+++|||+|+.|+.+|..+++.|.+|+++++.+.+...                                     ++. .
T Consensus         7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   86 (470)
T 1dxl_A            7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   86 (470)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            57999999999999999999999999999998643110                                     010 0


Q ss_pred             -----------HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          257 -----------IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       257 -----------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                                 +...+.+.+++.|++++.++.+. +  +++.+.+...   ++...++.+|.+|+|+|.+|...
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~--~~~~~~v~~~---~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           87 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SPSEISVDTI---EGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ETTEEEECCS---SSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cCCEEEEEeC---CCceEEEEcCEEEECCCCCCCCC
Confidence                       11123455667799999988654 3  3455555432   12226899999999999988754

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.78  E-value=0.00029  Score=71.69  Aligned_cols=99  Identities=13%  Similarity=0.261  Sum_probs=73.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC------------------------------C------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------S------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~------------------------------~------------  252 (477)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                              .            
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            4699999999999999999999999999997653210                              0            


Q ss_pred             -------C-------------C---------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEE
Q 011787          253 -------M-------------D---------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTIL  303 (477)
Q Consensus       253 -------~-------------~---------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i  303 (477)
                             +             .         ..+.+.+.+.+++.   +++++++++++.+++++.+++.+..++...++
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i  183 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAV  183 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEE
Confidence                   0             0         12334455555554   88899999999888888888765333444689


Q ss_pred             EcCEEEEeecCCC
Q 011787          304 EADVVLVSAGRTP  316 (477)
Q Consensus       304 ~~D~vi~a~G~~p  316 (477)
                      .+|+||.|.|...
T Consensus       184 ~a~~vVgADG~~S  196 (549)
T 2r0c_A          184 HARYLVACDGASS  196 (549)
T ss_dssp             EEEEEEECCCTTC
T ss_pred             EeCEEEECCCCCc
Confidence            9999999999653

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.76  E-value=3e-05  Score=77.84  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=73.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----------CCC---HHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------SMD---GEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------~~~---~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ..+|+|||+|+.|+.+|..|++. .+|+++++.+.+..          .++   .++...+.+.+ +.|+++++++.+.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~  185 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG  185 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence            35799999999999999999999 99999998876511          111   12233333334 56999999999999


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      +..+++.+.+...+  .++...+.+|.+|+|+|..|....
T Consensus       186 i~~~~~~~~~~~~~--~~~~~~~~~d~lvlAtGa~~~~~~  223 (493)
T 1y56_A          186 VFDKGEYFLVPVVR--GDKLIEILAKRVVLATGAIDSTML  223 (493)
T ss_dssp             CEECSSSEEEEEEE--TTEEEEEEESCEEECCCEEECCCC
T ss_pred             EEcCCcEEEEEEec--CCeEEEEECCEEEECCCCCccCCC
Confidence            88776655443321  122247999999999998887543

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.75  E-value=2.2e-05  Score=76.11  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGAL   78 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~   78 (477)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999998  9999999997765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.75  E-value=0.00022  Score=73.06  Aligned_cols=103  Identities=22%  Similarity=0.279  Sum_probs=76.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc------CCcEEEEEeCCCcCCC------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL------GSEVTVVEFAADIVPS------------------------------------  252 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~------g~~Vtli~~~~~~~~~------------------------------------  252 (477)
                      -+|+|||||+.|+.+|..|++.      |.+|+++++.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999986543100                                    


Q ss_pred             ---------C---C--------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-eEE-EEEee---cCCCc--
Q 011787          253 ---------M---D--------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEP---AAGGE--  299 (477)
Q Consensus       253 ---------~---~--------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~-v~~~~---~~~~~--  299 (477)
                               +   +              ..+.+.+.+.+++.|++++++++++++..+++ .+. +.+.+   ..++.  
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                     0   1              13456677777888999999999999987653 443 55532   01221  


Q ss_pred             -----eEEEEcCEEEEeecCCCC
Q 011787          300 -----KTILEADVVLVSAGRTPF  317 (477)
Q Consensus       300 -----~~~i~~D~vi~a~G~~p~  317 (477)
                           +.++.+|.||.|.|..+.
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCH
T ss_pred             cccCCceEEECCEEEEeeCCCch
Confidence                 368999999999997653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.75  E-value=2.7e-05  Score=82.69  Aligned_cols=42  Identities=31%  Similarity=0.592  Sum_probs=38.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ...+||+|||||++|++||..|++.|++|+|+|+.+.+||.+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  317 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence            346899999999999999999999999999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.73  E-value=2e-05  Score=79.16  Aligned_cols=97  Identities=20%  Similarity=0.384  Sum_probs=68.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC---CCCCHH--------HHHH--------------------H
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV---PSMDGE--------IRKQ--------------------F  261 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~---~~~~~~--------~~~~--------------------~  261 (477)
                      .+++|||+|+.|+.+|..|++.  +.+|+++++.+.+.   +.+.+.        ....                    +
T Consensus        12 ~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (493)
T 1m6i_A           12 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   91 (493)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHhh
Confidence            5799999999999999999877  78999999886531   000000        0000                    0


Q ss_pred             H--HH---HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          262 Q--RS---LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       262 ~--~~---l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .  +.   +.+.|++++.++++.+++..+..  +++.     +++++.+|.+|+|||.+|..
T Consensus        92 ~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~--V~~~-----~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           92 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNM--VKLN-----DGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGGTE--EEET-----TSCEEEEEEEEECCCEEECC
T ss_pred             cchhhhhhhhcCCeEEEcCCEEEEEECCCCE--EEEC-----CCCEEECCEEEECCCCCCCC
Confidence            0  00   12468999999999999766554  4443     45689999999999988865

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.73  E-value=0.0002  Score=71.45  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.         |.                            ++  
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~~--  220 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL---------PA----------------------------VD--  220 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------TT----------------------------SC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC---------cc----------------------------cC--
Confidence            4689999999999999999999999999999854331         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEec--CCEEEEEecCCc-eEEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGG-NTVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~v~~~~g~-~~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+...+.+.+++.+++++.+ .+..+.  .+...+...++. ..++.+|.||+|+|.+|..
T Consensus       221 ----------~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          221 ----------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             ----------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence                      001222344566789999877 344433  334555554432 3679999999999988753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.71  E-value=1.6e-05  Score=76.10  Aligned_cols=34  Identities=29%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC------CeEEEEecCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGA   77 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g------~~V~lie~~~~   77 (477)
                      +||+|||||++|+++|++|++.|      .+|+|+|++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            48999999999999999999997      99999999653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.70  E-value=2e-05  Score=78.25  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcC--------CCC--CHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--------PSM--DGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~--------~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      .+++++|||+|+.|+.+|..|++.|  .+|+++++.+.+.        |.+  ..++...+.+.+++.|++++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3578999999999999999999998  8999999987664        322  23566777788888999999887651 


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                           ..  +++.     + ..+.+|.||+|+|..|
T Consensus        84 -----~~--V~~~-----~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 -----RD--VTVQ-----E-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             -----TT--BCHH-----H-HHHHSSEEEECCCCCE
T ss_pred             -----eE--EEec-----c-ceEEcCEEEEecCcCC
Confidence                 11  2221     1 2468999999999885

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.70  E-value=0.00022  Score=71.28  Aligned_cols=99  Identities=20%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+.         |.     .                       +  
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~~-----~-----------------------d--  227 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL---------RS-----F-----------------------D--  227 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------TT-----S-----------------------C--
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc---------cc-----c-----------------------C--
Confidence            4689999999999999999999999999999854321         00     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CC-EEEEEecC---Cce--EEEEecEEEEccCCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PS-EVSVDTIE---GGN--TVVKGKNIIIATGSDVKS  190 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~-~~~v~~~~---g~~--~~i~~d~lvlAtG~~~~~  190 (477)
                                ..+.+.+.+.+++.+++++.+. +..+.   .. .+.+...+   |+.  ..+.+|.||+|+|.+|..
T Consensus       228 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          228 ----------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence                      0011223445667789888763 44443   22 35565554   221  679999999999988753

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.66  E-value=0.00047  Score=68.53  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=67.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.         |.                            ++  
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l---------~~----------------------------~~--  210 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL---------SR----------------------------FD--  210 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------TT----------------------------SC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------cc----------------------------cC--
Confidence            4689999999999999999999999999999854321         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecC---CEEEEE-ecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVD-TIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~---~~~~v~-~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+++++.+ .+..+..   ..+.|. +.+|  + +.+|.||+|+|.+|.
T Consensus       211 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g--~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          211 ----------QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG--E-IVADQVMLALGRMPN  269 (463)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC--E-EEESEEEECSCEEES
T ss_pred             ----------HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC--e-EEeCEEEEeeCcccC
Confidence                      001222345566789998876 3444432   235677 7777  4 999999999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.64  E-value=0.0002  Score=71.63  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=67.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.         |.                            ++  
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~~----------------------------~~--  231 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL---------RN----------------------------FD--  231 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------TT----------------------------SC--
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc---------cc----------------------------cC--
Confidence            4689999999999999999999999999999854321         00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEe--cCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+++++.+ .+..+  +.+.+.+.+.+|  .++.+|.||+|+|.+|.
T Consensus       232 ----------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          232 ----------YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNG--QTICADRVMLATGRVPN  289 (484)
T ss_dssp             ----------HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTS--CEEEESEEEECCCEEEC
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCC--cEEEcCEEEEeeCCCcC
Confidence                      001122334455668888875 34443  234467777777  68999999999998875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.63  E-value=7.5e-05  Score=72.95  Aligned_cols=33  Identities=33%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~  247 (477)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999999  99999998753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.62  E-value=0.00026  Score=70.84  Aligned_cols=97  Identities=13%  Similarity=0.139  Sum_probs=66.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++...+          |.     .                       +  
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l----------~~-----~-----------------------d--  226 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL----------RG-----F-----------------------D--  226 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS----------TT-----S-----------------------C--
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC----------cc-----c-----------------------C--
Confidence            358999999999999999999999999999873211          00     0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEecCC---ceEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEG---GNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~~~g---~~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+++++.+. +..+.   ...+.+...++   +..++.+|.||+|+|.+|.
T Consensus       227 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          227 ----------QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             ----------HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence                      0012223455667899988874 44442   23345554443   3457999999999998874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.60  E-value=0.00039  Score=70.15  Aligned_cols=97  Identities=15%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++...+          |.                            ++  
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l----------~~----------------------------~d--  249 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL----------RG----------------------------FD--  249 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS----------TT----------------------------SC--
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccc----------cc----------------------------CC--
Confidence            357999999999999999999999999999983211          00                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE----EEEecC---CEEEEE--ecCCc-eEEEEecEEEEccCCCCC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY----GKFISP---SEVSVD--TIEGG-NTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~---~~~~v~--~~~g~-~~~i~~d~lvlAtG~~~~  189 (477)
                                ..+...+.+.+++.+|+++.+.    +...+.   ..+.+.  ..++. ..++.+|.||+|+|.+|.
T Consensus       250 ----------~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~  316 (519)
T 3qfa_A          250 ----------QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC  316 (519)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEES
T ss_pred             ----------HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCccc
Confidence                      0012223345667899988773    222222   334443  34442 246789999999998884

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.58  E-value=3e-05  Score=76.86  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=67.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHH-c------CCcEEEEEeCCCcC--------CC--CCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWAR-L------GSEVTVVEFAADIV--------PS--MDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~-~------g~~Vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      +++|+|||+|+.|+.+|..|++ .      |.+|+++++.+.+.        |.  ...++...+.+.+++.|++++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999999 7      89999999987653        21  224566777788888899999875


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT  318 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~-p~~  318 (477)
                      .+      +..  +++.     ++ .+.+|.||+|+|.. |+.
T Consensus        83 ~v------~~~--v~~~-----~~-~~~~d~lViAtG~~~~~~  111 (456)
T 1lqt_A           83 VV------GEH--VQPG-----EL-SERYDAVIYAVGAQSDRM  111 (456)
T ss_dssp             CB------TTT--BCHH-----HH-HHHSSEEEECCCCCEECC
T ss_pred             EE------CCE--EEEC-----CC-eEeCCEEEEeeCCCCCCC
Confidence            43      122  2222     22 47899999999997 443

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.57  E-value=0.00043  Score=71.72  Aligned_cols=102  Identities=17%  Similarity=0.300  Sum_probs=76.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHH-cCCcEEEEEeCCCcCC------------------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR-LGSEVTVVEFAADIVP------------------------------------------  251 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~-~g~~Vtli~~~~~~~~------------------------------------------  251 (477)
                      .+|+|||+|+.|+-+|..|++ .|.+|+++++.+....                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            469999999999999999999 9999999987653210                                          


Q ss_pred             -------------------C-----CC-HHHHHHHHHHHHhcCc--EEEeCceEEEEEEcCC----eEEEEEeec---CC
Q 011787          252 -------------------S-----MD-GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSGD----GVKLTLEPA---AG  297 (477)
Q Consensus       252 -------------------~-----~~-~~~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~----~~~v~~~~~---~~  297 (477)
                                         .     ++ ..+.+.+.+.+++.|+  ++++++++++++.+++    .+.+++.+.   .+
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence                               0     00 2455566777777876  9999999999987652    577776531   13


Q ss_pred             CceEEEEcCEEEEeecCCC
Q 011787          298 GEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       298 ~~~~~i~~D~vi~a~G~~p  316 (477)
                      +...++.+|+||.|.|...
T Consensus       193 G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCcch
Confidence            4447899999999999653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.55  E-value=0.00057  Score=70.32  Aligned_cols=33  Identities=24%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999984

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.53  E-value=0.00071  Score=70.34  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHH-----cCCcEEEEEeCCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR-----LGSEVTVVEFAAD  248 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~-----~g~~Vtli~~~~~  248 (477)
                      ..|+|||+|+.|+-+|..|++     .|.+|+++++.+.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            369999999999999999999     9999999997653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.52  E-value=0.00076  Score=67.92  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcC-EEEEeecCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTP  316 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D-~vi~a~G~~p  316 (477)
                      .+...+.+.+++.|++++++++++++..+ ++++. +.+..  ++...++.+| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ--YGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE--TTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE--CCcEEEEEeCCeEEEeCCChh
Confidence            34455566677889999999999999887 45554 55443  2334579996 9999999654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.50  E-value=7.3e-05  Score=78.06  Aligned_cols=87  Identities=28%  Similarity=0.388  Sum_probs=66.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---------CCCC--HHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------PSMD--GEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---------~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      .++|+|||||+.|+.+|..+++.|.+|+++++.+.+.         +...  .+....+.+.+++.|+++++++.+..  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            4689999999999999999999999999999887542         1111  23445566777888999998875431  


Q ss_pred             EcCCeEEEEEeecCCCceEEE-EcCEEEEeecCCCCCCC
Q 011787          283 LSGDGVKLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAG  320 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i-~~D~vi~a~G~~p~~~~  320 (477)
                                        ..+ .+|.||+|||.+|+...
T Consensus       451 ------------------~~~~~~d~lviAtG~~p~~~~  471 (671)
T 1ps9_A          451 ------------------DQLQAFDETILASGIVPRTPP  471 (671)
T ss_dssp             ------------------SSSCCSSEEEECCCEEECCCC
T ss_pred             ------------------HHhhcCCEEEEccCCCcCCCC
Confidence                              113 79999999999887653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.49  E-value=0.00041  Score=75.29  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=72.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC---CC-----C----CHHHHHHHHHHHHhc-CcEEEeCceEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---PS-----M----DGEIRKQFQRSLEKQ-KMKFMLKTKVVG  280 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~---~~-----~----~~~~~~~~~~~l~~~-gv~~~~~~~v~~  280 (477)
                      ..+|+|||+|+.|+.+|..+++.|.+|+++++.+.+.   ..     +    ..+....+.+.+.+. +++++.++.|..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            3579999999999999999999999999999876542   01     1    123334445556664 999999999998


Q ss_pred             EEEcCCeEEEEEee----cC------CCceEEEEcCEEEEeecCCCCCC
Q 011787          281 VDLSGDGVKLTLEP----AA------GGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       281 i~~~~~~~~v~~~~----~~------~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      +...+....+....    ..      .+++..+.+|.+|+|||..|...
T Consensus       208 i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~  256 (965)
T 2gag_A          208 SYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPI  256 (965)
T ss_dssp             EETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCC
T ss_pred             eecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCC
Confidence            86432211121100    00      02235799999999999987654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.49  E-value=4e-05  Score=83.76  Aligned_cols=93  Identities=19%  Similarity=0.276  Sum_probs=70.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcC-------C--CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~-------~--~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      +++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.       |  .++.+..++..+.+++.||++++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            5789999999999999999999998 799999886542       2  23556666677888899999998877631   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT  318 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-~p~~  318 (477)
                        ..  +++.     ++..+.+|.||+|+|. +|..
T Consensus       264 --~~--v~~~-----~~~~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 --NE--ITLN-----TLKEEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             --TS--BCHH-----HHHHTTCCEEEECCCCCEECC
T ss_pred             --ce--EEhh-----hcCccCCCEEEEecCCCCCCC
Confidence              11  2221     2335679999999998 4764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.49  E-value=0.00068  Score=70.96  Aligned_cols=99  Identities=16%  Similarity=0.085  Sum_probs=70.6

Q ss_pred             CCcEEEEC--CChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           43 ENDVVVIG--GGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        43 ~~dvvIIG--gG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      ..+|+|||  +|..|+.+|..|++.|.+|+++++.+.+....            ...                      .
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~------------~~~----------------------~  568 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT------------NNT----------------------F  568 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG------------GGG----------------------T
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc------------ccc----------------------h
Confidence            45799999  99999999999999999999999865432100            000                      0


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEec-CCceEEEEecEEEEccCCCCC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTI-EGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~-~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                    ....+...+++.+|+++.+ .+..++.+...+... +++..++.+|.||+|+|.+|.
T Consensus       569 --------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          569 --------------EVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             --------------CHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             --------------hHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence                          0111234566789999988 466677777666532 334478999999999999875

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.45  E-value=8.3e-05  Score=77.35  Aligned_cols=36  Identities=36%  Similarity=0.566  Sum_probs=33.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHH-----CCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQ-----LGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~-----~g~~V~lie~~~~~   78 (477)
                      ++||+||||||+|+++|..|++     .|.+|+|||+.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            5899999999999999999999     99999999997543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.42  E-value=0.0013  Score=66.60  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+.+++.|++++.+ +|+++..++++  +.+.+.     +++++.+|.||.|+|..+..
T Consensus       170 ~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~-----~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          170 FLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTK-----EGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEET-----TSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEEC-----CCcEEEeCEEEECCCCchhh
Confidence            3445556679999999 89999876543  345443     34589999999999987765

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.40  E-value=0.00089  Score=66.62  Aligned_cols=99  Identities=19%  Similarity=0.300  Sum_probs=70.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC----------CC--------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------SM--------------------------------  253 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~----------~~--------------------------------  253 (477)
                      .|+|||+|..|+.+|..+++.|.+|+++++...-..          .+                                
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            489999999999999999999999999987610000          00                                


Q ss_pred             -------------------------------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeec
Q 011787          254 -------------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA  295 (477)
Q Consensus       254 -------------------------------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~  295 (477)
                                                           ...+...+.+.+++.|++++.++.+ ++..+++.+. +.+.+ 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~-  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEK-  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETT-
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEe-
Confidence                                                 0123344555566779999999999 9977766553 33321 


Q ss_pred             CCCceEEEEcCEEEEeecCCCCCC
Q 011787          296 AGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       296 ~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                         +..++.+|.||+|+|..+...
T Consensus       159 ---~~g~~~a~~VVlAtGg~~~~~  179 (472)
T 2e5v_A          159 ---RGLVEDVDKLVLATGGYSYLY  179 (472)
T ss_dssp             ---TEEECCCSEEEECCCCCGGGS
T ss_pred             ---CCCeEEeeeEEECCCCCcccC
Confidence               223577999999999877543

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.38  E-value=8.8e-05  Score=75.15  Aligned_cols=38  Identities=24%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGA   77 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~   77 (477)
                      ....||+||||||+||+.+|.+|.+ .+++|+|+|+...
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            3457999999999999999999998 5789999999643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.38  E-value=0.0013  Score=64.37  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=37.4

Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +.+++.|++++++++|++|..+++++ +. .     +++++.+|.||+|+|...
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~-----~g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINIEEKKV-YT-R-----DNEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEETTTTEE-EE-T-----TCCEEECSEEEECSCHHH
T ss_pred             HHHHHCCCEEEcCCeEEEEEEECCEE-EE-e-----CCcEEEeCEEEECCCHHH
Confidence            44566799999999999998877777 42 2     456899999999998653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.32  E-value=0.0017  Score=66.57  Aligned_cols=99  Identities=14%  Similarity=0.200  Sum_probs=70.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCC-----------CC---------------------C-------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVP-----------SM---------------------D-------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~-----------~~---------------------~-------  254 (477)
                      .|+|||+|..|+-+|..+++.|  .+|+++++.+....           .+                     +       
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~   86 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF   86 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            6999999999999999999999  99999998642100           00                     0       


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhcC-cEEEeCceEEEEEEcCC
Q 011787          255 -----------------------------------------------GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGD  286 (477)
Q Consensus       255 -----------------------------------------------~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~  286 (477)
                                                                     ..+...+.+.+++.| ++++.++.++++..+++
T Consensus        87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g  166 (602)
T 1kf6_A           87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDG  166 (602)
T ss_dssp             HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCC
Confidence                                                           122333445555667 99999999999987776


Q ss_pred             eEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          287 GVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       287 ~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ++. +.+.+..++....+.++.||+|+|.
T Consensus       167 ~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          167 HVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             EEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            543 3333223333347999999999983

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.29  E-value=0.00017  Score=73.34  Aligned_cols=36  Identities=33%  Similarity=0.666  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ..+|+||||+|++|+.+|.+|.+.|.+|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            469999999999999999999999999999999653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.24  E-value=0.0019  Score=64.70  Aligned_cols=105  Identities=14%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC--------------CcEEEEEeCCCcC-------CC--------------------C-
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG--------------SEVTVVEFAADIV-------PS--------------------M-  253 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g--------------~~Vtli~~~~~~~-------~~--------------------~-  253 (477)
                      .|+|||+|++|+-+|..|.+.|              ....++++.+.+.       |.                    + 
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            5999999999999999887653              2456777665321       10                    0 


Q ss_pred             ---------------------C--HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC--------eEEEEEeecCCCceEE
Q 011787          254 ---------------------D--GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD--------GVKLTLEPAAGGEKTI  302 (477)
Q Consensus       254 ---------------------~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~--------~~~v~~~~~~~~~~~~  302 (477)
                                           +  .++.++++...++.+..+.++++|++++..+.        ...++..+..++...+
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                                 0  23445555555555667889999999976432        3667777777778889


Q ss_pred             EEcCEEEEeecCCCCCCC
Q 011787          303 LEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       303 i~~D~vi~a~G~~p~~~~  320 (477)
                      +.++.||+|+|..|+...
T Consensus       201 ~~ar~vVlatG~~P~iP~  218 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMPS  218 (501)
T ss_dssp             EEEEEEEECCCCEECCCT
T ss_pred             EEeCEEEECcCCCCCCCC
Confidence            999999999999888764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.22  E-value=0.00011  Score=75.99  Aligned_cols=36  Identities=22%  Similarity=0.503  Sum_probs=33.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC--------CeEEEEecCC-CC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG--------LKTTCIEKRG-AL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g--------~~V~lie~~~-~~   78 (477)
                      .++|+|||||++|++||..|.+.|        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            478999999999999999999988        9999999988 88

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.19  E-value=0.00035  Score=71.30  Aligned_cols=44  Identities=25%  Similarity=0.421  Sum_probs=40.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      ..+||++|||+|..|...|..|++.|.+|++|||++..||.|..
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~   49 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   49 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence            34699999999999999999999999999999999999997643

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.17  E-value=0.00014  Score=73.64  Aligned_cols=35  Identities=26%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ..||+||||||+||+.+|.+|.+ |.+|+|+|+...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            45999999999999999999999 999999999543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.12  E-value=0.00028  Score=71.87  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGA   77 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~   77 (477)
                      ..||+||||||.||+.+|.+|.+.+ .+|+|||+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4599999999999999999999987 79999999654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.07  E-value=0.0044  Score=62.28  Aligned_cols=52  Identities=10%  Similarity=0.153  Sum_probs=38.0

Q ss_pred             HHHHHHhcCcEEEeCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          261 FQRSLEKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       261 ~~~~l~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      +.+.+++.|++++.+ +|+++..++++  +.+++.     +++++.+|.||.|+|.....
T Consensus       179 L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~-----~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          179 LSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTK-----QHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEES-----SSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEEC-----CCCEEEcCEEEECCCcchHH
Confidence            344555679999999 89999875544  345543     34589999999999987654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.07  E-value=0.00088  Score=67.42  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc-CCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~  249 (477)
                      -.|+|||||.+|+-+|..|++. |.+|+++++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            4699999999999999999874 9999999988875

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.02  E-value=0.0005  Score=69.10  Aligned_cols=38  Identities=29%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG   79 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~G   79 (477)
                      ..+|++|||+|++|+.+|.+|.+.|.+|+|+|+....+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            35899999999999999999999999999999976443

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.02  E-value=0.0017  Score=68.26  Aligned_cols=34  Identities=21%  Similarity=0.048  Sum_probs=31.1

Q ss_pred             CCcEEEEC--CChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIG--GGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIG--gG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..+|+|||  ||..|+-+|..|++.|.+|+|+++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            46899999  99999999999999999999999854

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.97  E-value=0.0069  Score=62.16  Aligned_cols=52  Identities=6%  Similarity=0.084  Sum_probs=37.3

Q ss_pred             HHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          265 LEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       265 l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      +++.|++++.++.++++..+++++. +.+.+..++....+.++.||+|+|-..
T Consensus       165 ~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          165 SLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            3456899999999999987666554 444332344445799999999999543

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.97  E-value=0.00044  Score=66.85  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcC-----------------------CC-C----------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-----------------------PS-M----------------  253 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~-----------------------~~-~----------------  253 (477)
                      +|+|||||+.|+.+|..|++.  |.+|+++++.+.+.                       .. +                
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            699999999999999999999  99999999876440                       00 0                


Q ss_pred             ---------------CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 ---------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ---------------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                                     ..++.+.+.+.+++.|++++++++|++++..                ..+.+|.||.|.|..+.
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------------CGGGCSEEEECCGGGGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------------ccccCCEEEECCCCCch
Confidence                           0245566667777778888888888776321                12468999999998775

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=96.94  E-value=0.0086  Score=60.39  Aligned_cols=51  Identities=10%  Similarity=0.142  Sum_probs=36.7

Q ss_pred             HHHHHh-cCcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          262 QRSLEK-QKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       262 ~~~l~~-~gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                      .+.+++ .|++++.+ +|++++.++++.  .+++.     ++.++.+|.||.|+|..+..
T Consensus       182 ~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~-----~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          182 TEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITK-----QNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEES-----SSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEEC-----CCCEEEcCEEEECCCcchHH
Confidence            344455 79999999 699998765443  34443     33469999999999997765

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.93  E-value=0.00048  Score=70.10  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~   76 (477)
                      ..||+||||||.||+.+|.+|.+. +.+|+|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            459999999999999999999975 79999999965

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.93  E-value=0.00067  Score=68.19  Aligned_cols=37  Identities=38%  Similarity=0.565  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ..++|++|||+|++|+.+|.+|.+.|.+|+|+|+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4569999999999999999999999999999999643

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.85  E-value=0.0039  Score=63.05  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      -.|+|||+|..|+-+|..+++ |.+|+++++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            369999999999999999999 999999998764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.75  E-value=0.00059  Score=69.26  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGAL   78 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~   78 (477)
                      .||+||||||.||+.+|.+|.+ .+.+|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 58999999996544

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.75  E-value=0.015  Score=60.02  Aligned_cols=52  Identities=10%  Similarity=0.075  Sum_probs=36.9

Q ss_pred             HHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       263 ~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +.+++.|++++.++.++++..+++++. +.+.+..++....+.++.||+|+|-
T Consensus       166 ~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          166 NECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            344556899999999999987666543 4443323444457999999999984

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.74  E-value=0.0011  Score=67.85  Aligned_cols=37  Identities=30%  Similarity=0.372  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGA   77 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~   77 (477)
                      +..+|++|||+|++|+.+|.+|.+ .+.+|+|+|+...
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            346999999999999999999999 7999999999654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.67  E-value=0.0011  Score=67.21  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~   78 (477)
                      ..+|++|||+|++|+.+|.+|.+. +.+|+|+|+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            458999999999999999999998 8999999996543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.67  E-value=0.0068  Score=60.04  Aligned_cols=40  Identities=35%  Similarity=0.410  Sum_probs=33.6

Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ++++++++|++|+.+++++.+++.     +++++.+|.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~-----~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELD-----NGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEES-----SSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEEC-----CCCEEECCEEEECCCH
Confidence            489999999999988888777764     5567999999999873

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.25  E-value=0.0034  Score=56.94  Aligned_cols=34  Identities=21%  Similarity=0.413  Sum_probs=31.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .|+|||+|++|+.+|..|++.|.+|+++++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999988754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.08  E-value=0.0072  Score=49.92  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .....+|+|||+|..|...|..|.+.|.+|+++|++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~   51 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN   51 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            344578999999999999999999999999999984

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.04  E-value=0.018  Score=59.48  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc------CCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL------GSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~------g~~Vtli~~~~  247 (477)
                      -.|+|||+|..|+-+|..+++.      |.+|.++++..
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~   61 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS   61 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence            3699999999999999999987      99999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.77  E-value=0.016  Score=46.89  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +.+++|||.|..|...|..|.+.|++|+++|++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~   39 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS   39 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence            457999999999999999999999999999983

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.65  E-value=0.0075  Score=60.36  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      |+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            67999999999999999999999999999998876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.47  E-value=0.017  Score=46.43  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++++|||+|..|...|..|.+.|.+|+++|+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~   35 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDI   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            5799999999999999999999999999998

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.35  E-value=0.021  Score=46.16  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +.+++|+|+|.-|...|..|.+.|++|+++|++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            357999999999999999999999999999983

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.32  E-value=0.022  Score=46.73  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +.+++|+|+|..|...|..|.+.|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            457999999999999999999999999999983

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.28  E-value=0.02  Score=44.34  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCC-CeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~   74 (477)
                      +.+++|+|+|..|...+..|.+.| ++|+++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r   37 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADH   37 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEES
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeC
Confidence            358999999999999999999999 89999998

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=94.99  E-value=0.019  Score=55.07  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4899999999999999999999999999998765

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.74  E-value=0.026  Score=55.29  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=31.6

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45789999999999999999999999999999876

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.29  E-value=0.093  Score=50.21  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||+|.+|+.+|..|+..|.+|+++|++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~  222 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVR  222 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999999999999999999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.13  E-value=0.051  Score=43.70  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .+++|+|+|..|...|..|.+.|.+|+++|+
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~   37 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI   37 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            5799999999999999999999999999998

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=94.08  E-value=0.031  Score=54.33  Aligned_cols=33  Identities=33%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999876

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.05  E-value=0.047  Score=47.79  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ...+|+|||||..|...|..|.+.|.+|+|++++
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4578999999999999999999999999999873

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.04  E-value=0.043  Score=54.78  Aligned_cols=38  Identities=39%  Similarity=0.546  Sum_probs=34.6

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      .+++|+|||+|.+|+.+|..|++.|.+|+++++++++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            36789999999999999999999999999999987763

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.00  E-value=0.023  Score=56.00  Aligned_cols=80  Identities=20%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL  292 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~  292 (477)
                      .++++.|||.|.+|+.+|..|.+.|.+|+..+.++...   +     ...+.|++.|+++..+.....            
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~---~-----~~~~~L~~~gi~~~~g~~~~~------------   67 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE---N-----PTAQSLLEEGIKVVCGSHPLE------------   67 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG---C-----HHHHHHHHTTCEEEESCCCGG------------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC---C-----hHHHHHHhCCCEEEECCChHH------------
Confidence            36899999999999999999999999999998765211   1     123467788999886643100            


Q ss_pred             eecCCCceEEEE-cCEEEEeecCCCCCCC
Q 011787          293 EPAAGGEKTILE-ADVVLVSAGRTPFTAG  320 (477)
Q Consensus       293 ~~~~~~~~~~i~-~D~vi~a~G~~p~~~~  320 (477)
                              ..-. +|.||++.|..|..+.
T Consensus        68 --------~~~~~~d~vv~spgi~~~~p~   88 (451)
T 3lk7_A           68 --------LLDEDFCYMIKNPGIPYNNPM   88 (451)
T ss_dssp             --------GGGSCEEEEEECTTSCTTSHH
T ss_pred             --------hhcCCCCEEEECCcCCCCChh
Confidence                    0011 7899999999886643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=94.00  E-value=0.047  Score=53.14  Aligned_cols=34  Identities=41%  Similarity=0.429  Sum_probs=32.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            6999999999999999999999999999998765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=93.99  E-value=0.049  Score=52.72  Aligned_cols=36  Identities=33%  Similarity=0.426  Sum_probs=33.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI   58 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            457999999999999999999999999999998755

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.93  E-value=0.061  Score=45.55  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-CCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~-g~~V~lie~~   75 (477)
                      ..+++|||+|..|...|..|.+. |++|+++|++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            45799999999999999999999 9999999983

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.85  E-value=0.039  Score=51.77  Aligned_cols=77  Identities=16%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             CCeeEEEcccHHHHH-HHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEE
Q 011787          214 PKKLVVIGAGYIGLE-MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL  292 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e-~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~  292 (477)
                      .+++.|||.|-+|+. +|..|.++|.+|++.++.+..      .    ..+.|++.|++++.+....             
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~------~----~~~~L~~~gi~v~~g~~~~-------------   60 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP------P----MSTQLEALGIDVYEGFDAA-------------   60 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------T----HHHHHHHTTCEEEESCCGG-------------
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc------H----HHHHHHhCCCEEECCCCHH-------------
Confidence            578999999999997 889999999999999876531      1    2345677899887542210             


Q ss_pred             eecCCCceEE-EEcCEEEEeecCCCCCCC
Q 011787          293 EPAAGGEKTI-LEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       293 ~~~~~~~~~~-i~~D~vi~a~G~~p~~~~  320 (477)
                             .-. ..+|.||.+.|..|..+.
T Consensus        61 -------~l~~~~~d~vV~Spgi~~~~p~   82 (326)
T 3eag_A           61 -------QLDEFKADVYVIGNVAKRGMDV   82 (326)
T ss_dssp             -------GGGSCCCSEEEECTTCCTTCHH
T ss_pred             -------HcCCCCCCEEEECCCcCCCCHH
Confidence                   000 247999999999886653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.84  E-value=0.07  Score=48.85  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ...+|.|||+|.-|...|..|++.|++|+++|++
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN   36 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3468999999999999999999999999999983

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=93.68  E-value=0.057  Score=52.66  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6899999999999999999999999999987654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.66  E-value=0.058  Score=51.16  Aligned_cols=34  Identities=41%  Similarity=0.536  Sum_probs=31.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      .+|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4699999999999999999999999999999863

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.61  E-value=0.066  Score=51.08  Aligned_cols=36  Identities=36%  Similarity=0.760  Sum_probs=33.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC-CCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~-~~~  249 (477)
                      +.+|+|||+|.+|+-+|..|.+.|.+|++++++ +++
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            578999999999999999999999999999988 543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.61  E-value=0.059  Score=47.14  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +|+|||+|..|...|..|.+.|++|+++|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            6999999999999999999999999999983

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.57  E-value=0.12  Score=48.99  Aligned_cols=33  Identities=36%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||+|..|+.+|..|+..|.+|+++|++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~  216 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVR  216 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999999984

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.54  E-value=0.057  Score=53.49  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~  249 (477)
                      ++|+|||||.+|+-+|..|++.|.  +|+++++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            579999999999999999999999  99999987765

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.52  E-value=0.046  Score=49.44  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ....|+|||||..|...+..|.+.|.+|+||+++
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            3578999999999999999999999999999983

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=93.51  E-value=0.06  Score=52.35  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||||+.|+.+|..+++.|.+|+++++.+.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~   62 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP   62 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            357999999999999999999999999999988754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.46  E-value=0.068  Score=51.50  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++.+..
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   39 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF   39 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            36999999999999999999999999999987643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=93.43  E-value=0.073  Score=51.61  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=32.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCc-EEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~-Vtli~~~~~~  249 (477)
                      .+|+|||||+.|+.+|..|++.|.+ |+++++.+.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            4799999999999999999999999 9999998765

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.33  E-value=0.07  Score=51.91  Aligned_cols=36  Identities=28%  Similarity=0.529  Sum_probs=33.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~  249 (477)
                      ..+|+|||+|..|+-+|..|++.| .+|+++++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            467999999999999999999999 899999988765

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.30  E-value=0.072  Score=50.72  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ++|+|||+|+.|++.|..+++.|.+|+++++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999999765

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.25  E-value=0.068  Score=51.11  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+|+|||||..|+.+|..|++.|.+|+++++.+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.25  E-value=0.058  Score=51.39  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~   36 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP   36 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3699999999999999999999999999998764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.25  E-value=0.097  Score=51.46  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ...+|.|||.|.+|+++|..|++.|++|++.|.+
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~   41 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGK   41 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3578999999999999999999999999999984

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.17  E-value=0.1  Score=48.17  Aligned_cols=33  Identities=33%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|.|||+|.-|...|..|++.|++|+++|++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            357999999999999999999999999999983

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.16  E-value=0.34  Score=38.79  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..++++|+|.|..|..+|..|.+.|.+|+++++++
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            35789999999999999999999999999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.13  E-value=0.11  Score=42.59  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+++++|+|+|.+|..++..|.+.|.+|+++.+++
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            46789999999999999999999999999998765

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.10  E-value=0.078  Score=53.18  Aligned_cols=35  Identities=34%  Similarity=0.571  Sum_probs=32.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~  249 (477)
                      .+|+|||+|.+|+-+|..|++.| .+|+++++++++
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            57999999999999999999999 999999987754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.06  E-value=0.085  Score=52.42  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            568999999999999999999999999999988765

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.06  E-value=0.076  Score=50.85  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      .+|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3699999999999999999999999999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.01  E-value=0.11  Score=48.72  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      .++|.|||+|..|.+.|..|++.|+ +|+|+|.+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4689999999999999999999997 99999984

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=92.98  E-value=0.089  Score=49.97  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=30.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            579999999999999999999999999999753

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=92.96  E-value=0.081  Score=53.10  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+|+|||||..|+.+|..|++.|.+|+++++++++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            57999999999999999999999999999988765

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.96  E-value=0.079  Score=52.18  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      .+|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            469999999999999999999999999999998774

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.90  E-value=0.091  Score=49.76  Aligned_cols=35  Identities=40%  Similarity=0.575  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~   76 (477)
                      ...+|||+|+|.||+.+|..|...|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35789999999999999999999998 899999953

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.79  E-value=0.081  Score=50.58  Aligned_cols=33  Identities=39%  Similarity=0.633  Sum_probs=30.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999999874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.78  E-value=0.1  Score=49.39  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      +++|.|||+|..|...|..|.+.|++|+++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r   35 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDI   35 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            46899999999999999999999999999988

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.73  E-value=0.14  Score=47.84  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ...+|.|||+|..|...|..|+..|+ +|+|+|.+
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            34689999999999999999999997 99999974

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.65  E-value=0.13  Score=44.88  Aligned_cols=75  Identities=20%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL  292 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~  292 (477)
                      .+++++|||||.+|...+..|.+.|.+|+++.+.      ..+++    .+..++.++.+.....      .        
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~------~~~~l----~~l~~~~~i~~i~~~~------~--------   85 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT------VSAEI----NEWEAKGQLRVKRKKV------G--------   85 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS------CCHHH----HHHHHTTSCEEECSCC------C--------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC------CCHHH----HHHHHcCCcEEEECCC------C--------
Confidence            4789999999999999999999999999999743      23443    3333445566543211      0        


Q ss_pred             eecCCCceEEEEcCEEEEeecCCCC
Q 011787          293 EPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       293 ~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                            ....-.+|+||.|||....
T Consensus        86 ------~~dL~~adLVIaAT~d~~~  104 (223)
T 3dfz_A           86 ------EEDLLNVFFIVVATNDQAV  104 (223)
T ss_dssp             ------GGGSSSCSEEEECCCCTHH
T ss_pred             ------HhHhCCCCEEEECCCCHHH
Confidence                  0111238999999887643

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.58  E-value=0.077  Score=52.00  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..+|+|||.|.+|+++|..|++.|++|+++|.+.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3579999999999999999999999999999854

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.57  E-value=0.12  Score=48.96  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +..++|.|||+|.-|.+.|..|++.|++|++++++
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            34578999999999999999999999999999983

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=92.51  E-value=0.11  Score=49.84  Aligned_cols=35  Identities=31%  Similarity=0.648  Sum_probs=32.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+++|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            47999999999999999999999999999988765

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=92.47  E-value=0.084  Score=50.33  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            468999999999999999999 59999999988644

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.45  E-value=0.1  Score=51.69  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            468999999999999999999999999999988764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.34  E-value=0.16  Score=47.03  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      |++...+|.|||+|..|.+.|..|+..|+ +|+++|.
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~   40 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDI   40 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            44456789999999999999999999999 9999998

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.32  E-value=0.14  Score=48.19  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .++|.|||+|.-|.+.|..|++.|.+|+++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEC
Confidence            35899999999999999999999999999987

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=92.31  E-value=0.1  Score=48.78  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHH--cCCcEEEEEeCCCcCCC-------CC-HHHHHHHHHHHHhcCcEEEeCceE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWAR--LGSEVTVVEFAADIVPS-------MD-GEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~--~g~~Vtli~~~~~~~~~-------~~-~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      ...|+|||+|+.|+.+|..|++  .|.+|+++++.+.+...       ++ ..+...+.+.+++.|+++..+...
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~~  139 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDY  139 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSSE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCcc
Confidence            4579999999999999999974  59999999988765210       11 112223445567778887765443

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=92.28  E-value=0.095  Score=53.01  Aligned_cols=34  Identities=18%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHH---cCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~---~g~~Vtli~~~~  247 (477)
                      ..+|+|||||..|+-+|..|++   .|.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   899999999865

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=92.26  E-value=0.12  Score=50.81  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+|+|||+|..|+.+|..|++.|.+|+++++++++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            47999999999999999999999999999988765

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=92.25  E-value=0.23  Score=49.32  Aligned_cols=40  Identities=40%  Similarity=0.592  Sum_probs=38.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      +||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence            8999999999999999999999999999999999999754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.22  E-value=0.13  Score=48.70  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ...+|+|+|+|.||..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45799999999999999999999997 79999995

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=92.19  E-value=0.13  Score=49.51  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++++++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            357999999999999999999999999999988765

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.19  E-value=0.15  Score=47.42  Aligned_cols=34  Identities=26%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~   75 (477)
                      .+.+|+|||+|..|.+.|..|+..+.  ++.++|.+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34789999999999999999999987  89999974

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.18  E-value=0.16  Score=48.27  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      +++|+|||||..|..++..+++.|++|+++|.++
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4679999999999999999999999999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=92.14  E-value=0.11  Score=50.11  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHH-cC-CcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR-LG-SEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~-~g-~~Vtli~~~~  247 (477)
                      .+|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 99 9999999876

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.12  E-value=0.073  Score=52.39  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .++|+|+|+|-.|.+.|..|.+.|++|++||+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999854

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=92.10  E-value=0.14  Score=50.09  Aligned_cols=35  Identities=31%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~  249 (477)
                      .+|+|||+|..|+-+|..|++.|. +|+++++.+..
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            479999999999999999999999 99999988754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=92.07  E-value=0.1  Score=53.91  Aligned_cols=35  Identities=49%  Similarity=0.685  Sum_probs=32.3

Q ss_pred             CCcEEEECCChHHHHHHHHHH---H-CCCeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAA---Q-LGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~---~-~g~~V~lie~~~~   77 (477)
                      ++||||||||+||++||+.|+   + .|.+|+||||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            589999999999999999999   6 7999999999764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.06  E-value=0.15  Score=47.54  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ..+|.|||+|..|.+.|..|++.|+ +|+++|++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4689999999999999999999998 99999984

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.92  E-value=0.13  Score=51.26  Aligned_cols=36  Identities=36%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            468999999999999999999999999999998875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=91.85  E-value=0.12  Score=49.79  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=32.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc-CCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~-g~~Vtli~~~~~~  249 (477)
                      .+++|||+|.+|+-+|..|++. |.+|+++++++++
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4799999999999999999998 9999999988755

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.82  E-value=0.12  Score=48.89  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC------CcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG------SEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g------~~Vtli~~~~  247 (477)
                      +|+|||||.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6899999999999999999998      8999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.73  E-value=0.17  Score=47.11  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|.|||+|.-|.+.|..|++.|.+|+++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r   33 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSR   33 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence            5899999999999999999999999999988

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.66  E-value=0.2  Score=46.50  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+++|.|||.|.-|...|..|++.|++|+++|++
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~   53 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRT   53 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            34578999999999999999999999999999984

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.65  E-value=0.18  Score=48.52  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||+|.+|+.+|..|+..|.+|+++|++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~  204 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTR  204 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999999999999999999984

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.63  E-value=0.15  Score=53.12  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=32.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||||..|+-+|..|++.|.+|+++++.+.+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            368999999999999999999999999999987543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.57  E-value=0.18  Score=46.75  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|.|||+|..|...|..|.+.|++|+++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEEC
Confidence            4799999999999999999999999999988

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.56  E-value=0.2  Score=47.95  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||+|.+|+.++..|+..|.+|+++|+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~  204 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVR  204 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999999984

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.54  E-value=0.16  Score=52.87  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .+|+|||||..|+-+|..|++.|.+|+++++.+.+
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  307 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAP  307 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            68999999999999999999999999999986543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=91.54  E-value=0.14  Score=51.34  Aligned_cols=33  Identities=36%  Similarity=0.395  Sum_probs=31.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            479999999999999999999999999999886

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.54  E-value=0.22  Score=43.11  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .++|.|||+|..|.+.|..|.+.|.+|++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999854

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=91.50  E-value=0.19  Score=47.57  Aligned_cols=37  Identities=14%  Similarity=0.039  Sum_probs=30.9

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        38 ~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      +.|+.+++|.|||.|.-|...|..|.+.|++|+++|+
T Consensus        17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr   53 (358)
T 4e21_A           17 NLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDL   53 (358)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             hhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeC
Confidence            3455667999999999999999999999999999998

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=91.49  E-value=0.15  Score=50.34  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=32.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~  249 (477)
                      .+|+|||+|.+|+-+|..|++.|  .+|+++++++++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            57999999999999999999999  999999987654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=91.34  E-value=0.15  Score=48.52  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            6899999999999999999999999999987654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=91.25  E-value=0.15  Score=50.87  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ..|+|||||.+|+.+|..|++.|.+|+++++.+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            369999999999999999999999999999865

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.23  E-value=0.22  Score=48.32  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+.+.+|.|||.|..|+..|..+++.|++|+.+|-+
T Consensus        17 ~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           17 RGSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             TTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            3345678999999999999999999999999999974

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.21  E-value=0.21  Score=46.41  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~   74 (477)
                      ++|+|||+|..|.+.|..|.+.|.  +|+++|+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~   40 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            589999999999999999999998  9999998

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.19  E-value=0.27  Score=40.08  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      .++++|+|+|..|..++..|.+.|.+|+++.++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            467999999999999999999999999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=91.18  E-value=0.25  Score=46.20  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             CCcEEEECCChHHHH-HHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYV-AAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~-aA~~l~~~g~~V~lie~~   75 (477)
                      +++|.|||.|.+|++ +|..|.++|++|++.|++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            368999999999997 788889999999999984

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.14  E-value=0.23  Score=45.28  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      +|.|||+|..|...|..|.+.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            69999999999999999999999999999853

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.14  E-value=0.25  Score=45.92  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ...+|.|||+|..|.+.|..|+..++ +++|+|.+
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~   40 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA   40 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            45689999999999999999999988 99999984

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.13  E-value=0.19  Score=46.58  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|.|||+|.-|.+.|..|++.|.+|+++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r   33 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLR   33 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEc
Confidence            5799999999999999999999999999988

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.08  E-value=0.18  Score=46.35  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .+.+|.|||.|.-|...|..|++.|++|+++|+++
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            35689999999999999999999999999999853

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.00  E-value=0.18  Score=45.01  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      .+|+|||+|..|..+|..|++.|. +++|+|++
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            589999999999999999999996 89999984

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.95  E-value=0.28  Score=45.53  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +...+|.|||+|.-|...|..|.+.|++|+++|++
T Consensus        28 ~~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~   62 (316)
T 2uyy_A           28 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRT   62 (316)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCC
Confidence            33468999999999999999999999999999884

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.91  E-value=0.25  Score=43.54  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+.|+|.|| |.-|...+..|.+.|++|++++++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~   54 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRN   54 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Confidence            4568999998 999999999999999999999983

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.91  E-value=0.22  Score=46.16  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .+|.|||+|.-|..-|..++..|++|+|+|.+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            57999999999999999999999999999983

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.90  E-value=0.21  Score=49.21  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-CC-eEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL-GL-KTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~-g~-~V~lie~~~~   77 (477)
                      .++|.|||.|.-|+..|..|++. |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46899999999999999999999 99 9999998643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.89  E-value=0.23  Score=47.19  Aligned_cols=31  Identities=35%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .+|+|+|+|.+|..++..|+..|.+|+++|+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr  198 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDI  198 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            6899999999999999999999999999998

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.85  E-value=0.21  Score=40.01  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      .++++|+|+|..|..++..|.+.|.+|++++++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            367999999999999999999999999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=90.66  E-value=0.18  Score=51.15  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ...|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4579999999999999999999999999999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.61  E-value=0.27  Score=45.42  Aligned_cols=33  Identities=27%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +++|.|||.|.-|...|..|.+.|++|+++|++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            468999999999999999999999999999983

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=90.50  E-value=0.26  Score=51.04  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=32.8

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      ..++|+|||+|+.|+.+|..|.+.|.+|+++++.++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~  141 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  141 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            357899999999999999999999999999998764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.45  E-value=0.26  Score=48.71  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .++|.|||.|..|+..|..|++.|++|+++|++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            478999999999999999999999999999984

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=90.44  E-value=0.32  Score=45.41  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      .+|.|||+|..|.+.|..|+..|+ +|+++|.+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998 99999984

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.44  E-value=0.12  Score=41.64  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ..+++|||+|..|...|..|.+.|.+|+++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r   52 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGR   52 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            36799999999999999999999999999988

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=90.32  E-value=0.43  Score=46.92  Aligned_cols=46  Identities=17%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      |+..+||+|||+|.+|+++|..|++.|++|+++|+++.+||.+...
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~   62 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL   62 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcccc
Confidence            5567999999999999999999999999999999999999987543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=90.30  E-value=0.18  Score=49.37  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC-CcEEEEEe
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG-SEVTVVEF  245 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~  245 (477)
                      .+|+|||+|..|+.+|..|++.| .+|+++++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 99999998

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.27  E-value=0.3  Score=47.23  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||.|..|...|..|.+.|.+|++||++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            357999999999999999999999999999985

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.23  E-value=0.29  Score=47.71  Aligned_cols=46  Identities=22%  Similarity=0.338  Sum_probs=41.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      |..++||+|||+|++|+++|..|++.|++|+|+|+++.+||.|...
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence            4456899999999999999999999999999999999999987543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=90.22  E-value=0.27  Score=52.19  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=32.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++|+|||+|+.|+.+|..|.+.|.+|+++++.+++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            578999999999999999999999999999987653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.20  E-value=0.36  Score=43.49  Aligned_cols=33  Identities=15%  Similarity=0.389  Sum_probs=30.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+++|||+|-+|.++|..|.+.|.+|+|+.|.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999999883

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.05  E-value=0.31  Score=45.03  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHCCC--eEEEEecC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR   75 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~   75 (477)
                      +|+|||+|..|.+.|..|+..|+  +|+++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            69999999999999999999998  99999983

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=90.05  E-value=0.25  Score=50.06  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .-.|+|||||..|+-+|..+++.|.+|.++++.+
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4579999999999999999999999999999874

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=90.04  E-value=0.29  Score=48.57  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~  249 (477)
                      ..+++|||+|.+|+-+|..|++.| .+|+++++++.+
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            467999999999999999999998 799999988765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.98  E-value=0.28  Score=45.64  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~   74 (477)
                      ...+|.|||+|..|.+.|..|+..|.  +++++|.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~   38 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDV   38 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEec
Confidence            35689999999999999999999886  8999997

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.98  E-value=0.3  Score=37.42  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=29.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFA  246 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~  246 (477)
                      .++++|+|+|.+|..++..|.+.| .+|+++.|+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 788888775

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.96  E-value=0.37  Score=38.24  Aligned_cols=32  Identities=13%  Similarity=0.485  Sum_probs=29.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      .+++|+|+|..|..++..|.+.|.+|+++.++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            57999999999999999999999999998764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.94  E-value=0.19  Score=46.54  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-----C-CeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL-----G-LKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~-----g-~~V~lie~   74 (477)
                      +++|.|||+|.-|...|..|.+.     | ++|+++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            35899999999999999999998     9 99999976

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.88  E-value=0.27  Score=44.42  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+++|+|||+|.+|...+..|.+.|.+|+++....
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            47899999999999999999999999999998643

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=89.83  E-value=0.45  Score=43.95  Aligned_cols=34  Identities=29%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ...+|.|||.|.-|...|..|.+.|++|+++|++
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~   41 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRS   41 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3468999999999999999999999999999983

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=89.83  E-value=0.29  Score=47.25  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=32.0

Q ss_pred             CCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEe
Q 011787           37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE   73 (477)
Q Consensus        37 ~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie   73 (477)
                      ...|+...+|+|+|||..|...+..+++.|++|.++|
T Consensus        18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           18 QGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             ---CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             eccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4556667899999999999999999999999999999

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.81  E-value=0.41  Score=43.52  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      +++|+|.|+|.-|...+..|.+.|++|++++++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3579999999999999999999999999999853

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.71  E-value=0.29  Score=48.07  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||||..|...+..|.+.|.+|+|++++
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            468999999999999999999999999999984

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=89.68  E-value=0.5  Score=45.28  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ....|+|||+|..|...+..+++.|++|+++|...
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            45689999999999999999999999999999743

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.67  E-value=0.38  Score=45.81  Aligned_cols=32  Identities=34%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ...|+|+|+|..|..+|..|+..|.+|+++|+
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~  197 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDV  197 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            36899999999999999999999999999998

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.66  E-value=0.17  Score=44.33  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEE-Eec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTC-IEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~l-ie~   74 (477)
                      .+++|.|||+|.-|.+.|..|.+.|++|++ +++
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r   55 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSR   55 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            356899999999999999999999999998 776

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.62  E-value=0.39  Score=43.51  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ...++|+|+|-+|.++|..|.+.|.+|+++++
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R  150 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNR  150 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEEC
Confidence            46899999999999999999999999999988

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=89.49  E-value=0.33  Score=47.52  Aligned_cols=32  Identities=38%  Similarity=0.559  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|||.|..|+..|..|++.|++|+++|++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECC
Confidence            58999999999999999999999999999984

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=89.49  E-value=0.43  Score=44.30  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ..+|.|||+|..|.+.|..|+..+. ++.++|.+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~   38 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA   38 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4689999999999999999999887 99999984

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.43  E-value=0.42  Score=41.55  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .++.|||+|..|...|..|.+.|++|+++++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r   59 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSR   59 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeC
Confidence            5799999999999999999999999999988

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.38  E-value=0.25  Score=45.33  Aligned_cols=32  Identities=31%  Similarity=0.279  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|||+|.-|.+.|..|.+.|.+|++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEec
Confidence            57999999999999999999999999999984

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.37  E-value=0.36  Score=44.34  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      +++|.|||.|..|...|..|.+.|++|+++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~   35 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDL   35 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence            46899999999999999999999999999987

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.36  E-value=0.66  Score=45.29  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ...+|.|||+|.-|...|..|++.|++|+++|++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~   86 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRN   86 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECc
Confidence            3468999999999999999999999999999984

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.36  E-value=0.41  Score=45.68  Aligned_cols=32  Identities=44%  Similarity=0.627  Sum_probs=30.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ..+|+|||+|..|..+|..|+..|.+|+++|+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~  199 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDI  199 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            46899999999999999999999999999998

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=89.15  E-value=0.32  Score=47.99  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC--CCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~   75 (477)
                      +++|.|||.|..|...|..|++.  |++|+++|++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            46899999999999999999998  8999999983

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.13  E-value=0.32  Score=42.41  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             CCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +++|+|.|| |..|...+..|.+.|++|++++++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~   37 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRH   37 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            468999996 999999999999999999999984

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.06  E-value=0.36  Score=46.76  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +..++|.|||.|..|+..|..|++ |++|+++|++
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~   67 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIV   67 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecC
Confidence            345689999999999999999998 9999999984

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.94  E-value=0.42  Score=47.21  Aligned_cols=33  Identities=30%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|.|||+|.-|...|..|++.|++|+++|++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECC
Confidence            458999999999999999999999999999984

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.83  E-value=0.45  Score=46.79  Aligned_cols=33  Identities=30%  Similarity=0.388  Sum_probs=30.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|.|||+|.-|...|..|++.|++|+++|++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~   69 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESD   69 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999999999999999999999999999983

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=88.82  E-value=0.41  Score=38.13  Aligned_cols=33  Identities=33%  Similarity=0.499  Sum_probs=29.8

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      .++++|+|+|.+|..++..|.+.|.+|+++.++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467999999999999999999999999998764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.79  E-value=0.45  Score=46.37  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=31.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..++.|||.|.-|+..|..|++.|++|+++|+++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~   41 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDA   41 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-40
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-19
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-39
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-31
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	8e-35
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-28
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	2e-33
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	2e-33
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-17
d1dxla3	123	d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas	1e-32
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-31
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	7e-26
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	6e-31
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	4e-22
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	8e-05
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	3e-29
d3lada3	124	d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas	9e-28
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	9e-28
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	1e-27
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-15
d1v59a3	123	d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas	1e-27
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-27
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-27
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	2e-26
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	5e-22
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	5e-26
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-25
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-23
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	4e-25
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	1e-21
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	3e-24
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	3e-23
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	6e-12
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-22
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	2e-20
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	3e-22
d1mo9a3	140	d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c	7e-22
d1ojta3	128	d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas	2e-21
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	2e-21
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	2e-14
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-21
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	1e-20
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	3e-20
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-12
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-05
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-19
d1ebda3	115	d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas	9e-19
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	1e-18
d1gesa3	115	d.87.1.1 (A:336-450) Glutathione reductase {Escher	9e-18
d1feca3	128	d.87.1.1 (A:358-485) Trypanothione reductase {Crit	9e-18
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	1e-17
d1h6va3	133	d.87.1.1 (A:367-499) Mammalian thioredoxin reducta	2e-17
d1xdia2	118	d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas	2e-17
d1onfa3	119	d.87.1.1 (A:377-495) Glutathione reductase {Plasmo	3e-17
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	4e-17
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	4e-17
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-16
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	1e-16
d3grsa3	115	d.87.1.1 (A:364-478) Glutathione reductase {Human	4e-16
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-16
d1lvla3	123	d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas	4e-15
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-15
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	1e-14
d1nhpa3	126	d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus	2e-14
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	2e-14
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-13
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	1e-13
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	3e-05
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	5e-13
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-12
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	4e-12
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.001
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-11
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	8e-11
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	2e-10
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	2e-10
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-10
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	6e-10
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	7e-10
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	2e-09
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-09
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-09
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	6e-08
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-09
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-09
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	4e-09
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-09
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	3e-05
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-09
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	9e-09
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	1e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-08
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	4e-08
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	1e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-07
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	5e-07
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	3e-06
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-07
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	9e-07
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	4e-06
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	4e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	6e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	7e-06
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	7e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	1e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-05
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-05
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-05
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	3e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-05
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	2e-04
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	5e-04
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	6e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	6e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.002
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.002
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	0.003
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	0.003
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	0.004
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.004

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score =  142 bits (359), Expect = 2e-40
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D + IGGG GG  +  +AA  G K   IE    LGGTC+NVGC+P K + H++ +     
Sbjct: 4   DYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIH 62

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
                +G   +  + +   ++A +   +  +    E +  KN V  +KG+ +F+      
Sbjct: 63  MYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA---- 118

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL-----------ALNEV 213
             T+E     +   +I+IATG    S P    ++   + + G               N  
Sbjct: 119 -KTLEVNGETITADHILIATGG-RPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTN 176

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
            + +  +G     +E+  V    G  ++   F       +D
Sbjct: 177 IEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 217

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 83.4 bits (205), Expect = 5e-19
 Identities = 38/213 (17%), Positives = 60/213 (28%), Gaps = 43/213 (20%)

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE------------FAADIVPSMDGEIRKQFQRS 264
            + IG G  G+   +  A  G +  ++E                 V     +IR+     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 265 LEK---------------------------QKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
                                            + +L    V V                
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124

Query: 298 GEKTILEADVVLVSA----GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
           GE    +  ++         R P    + L+  GV+T++ G I V++   TNI G+YA+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184

Query: 354 DVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYD 386
           D      L   A   G    E L         D
Sbjct: 185 DNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 217

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  140 bits (354), Expect = 1e-39
 Identities = 136/149 (91%), Positives = 143/149 (95%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
           SDENDVV+IGGGPGGYVAAIKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY
Sbjct: 1   SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
           HEA HSFA+HGVK S+VE+DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF+SP
Sbjct: 61  HEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP 120

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVK 189
           SE+SVDTIEG NTVVKGK+IIIATGSDVK
Sbjct: 121 SEISVDTIEGENTVVKGKHIIIATGSDVK 149

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  118 bits (295), Expect = 3e-31
 Identities = 63/72 (87%), Positives = 68/72 (94%)

Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
           GRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVAC
Sbjct: 150 GRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVAC 209

Query: 373 VEFLAGKHGHVD 384
           VE+LAGK GHVD
Sbjct: 210 VEYLAGKVGHVD 221

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE 244
           +V+IG G  G       A+LG + T +E
Sbjct: 6   VVIIGGGPGGYVAAIKAAQLGFKTTCIE 33

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (321), Expect = 8e-35
 Identities = 91/235 (38%), Positives = 124/235 (52%), Gaps = 21/235 (8%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           + +  +DVV+IGGGP GYVAAIKAAQLG  T C+EKRG LGGTCLNVGCIPSKALL++SH
Sbjct: 1   TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSH 60

Query: 99  MYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
           ++H+        G+     +++++      KD AV  LT GIE LFKKNKVTY KG G F
Sbjct: 61  LFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF 120

Query: 158 ISPSEVSVDTIEGGNTVV------KGKNIIIATGSDVKSLPGITIDEKRI--------VS 203
              +++ V  ++G    V        KNII+ATGS+V    G       +        V 
Sbjct: 121 EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVD 180

Query: 204 STGALALNEV----PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
             G L +++        + V+G    G  +       G  +  VE        ++
Sbjct: 181 KRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEG--IAAVEMLKTGHGHVN 233

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 1e-28
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
           +     V    GR P+ AGLG +KIG+E DK GR+ ++++F +  P +  +GDV  GPML
Sbjct: 151 VATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPML 210

Query: 362 AHKAEEDGVACVEFLAGKHGHVD 384
           AHKAEE+G+A VE L   HGHV+
Sbjct: 211 AHKAEEEGIAAVEMLKTGHGHVN 233

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  120 bits (302), Expect = 2e-33
 Identities = 106/123 (86%), Positives = 118/123 (95%)

Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249
           SLPG+TIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW R+GSEVTVVEFA++I
Sbjct: 1   SLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60

Query: 250 VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309
           VP+MD EIRKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLT+EP+AGGE+TI+EADVVL
Sbjct: 61  VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120

Query: 310 VSA 312
           VSA
Sbjct: 121 VSA 123

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score =  124 bits (312), Expect = 2e-33
 Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 44/286 (15%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D++VIGGG GG  AA +AA+   K   +EK   LGGTC+NVGC+P K + +++ ++   +
Sbjct: 3   DLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVNVGCVPKKIMFNAASVHD--I 59

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE-- 162
              + H    +    +LP ++ ++DK +  L         K+KV   +G   F+S +   
Sbjct: 60  LENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRIL 119

Query: 163 -------VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---VSSTGALALNE 212
                   + D       +++G+NI+IA G+        T + K     V +     + +
Sbjct: 120 IKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVD 179

Query: 213 VPKKLVVIGAGYIG--LEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270
             ++  V     +G    +          +  +      +   +      F         
Sbjct: 180 ENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN------- 232

Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
                            V+LT      G    L AD + +   R  
Sbjct: 233 -----------------VQLTPVAINAGR---LLADRLFLKKTRKT 258

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 79.3 bits (194), Expect = 3e-17
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD----KMGRIPVNERFATNIPGVYAIG 353
             + ILE   +L++ G  P       + + +E          I V+E   T++  +YA+G
Sbjct: 134 LNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVG 193

Query: 354 DVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGV 413
           D     M+    E + +  ++    +      + V   ++ + ++  V     ++    +
Sbjct: 194 DCC---MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRL 250

Query: 414 EYRVGKFP 421
             +  +  
Sbjct: 251 FLKKTRKT 258

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  118 bits (297), Expect = 1e-32
 Identities = 85/123 (69%), Positives = 91/123 (73%), Gaps = 30/123 (24%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEK 444
           YDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGKFPF+ANSRAKAID+AEG+VKI+AEK
Sbjct: 1   YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEK 60

Query: 445 ETDKILGVHIMAPNAGEL------------------------------IHEAAMATHDKP 474
           ETDKILGVHIMAPNAGEL                              I EAAMAT+DKP
Sbjct: 61  ETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP 120

Query: 475 IHI 477
           IHI
Sbjct: 121 IHI 123

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  118 bits (295), Expect = 3e-31
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 48/217 (22%)

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE-----------------------FAADIVPSM 253
            +V+GAG  G       A+LG +VT+VE                          +     
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65

Query: 254 DGEIRKQFQRSLEKQKMKFMLK------TKVVGVDLSGDGV-----------KLTLEPAA 296
           +    K    +++  K++          T  V   L G+ V             T+    
Sbjct: 66  EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVN 125

Query: 297 GGEKTILEADVVLVSAGRTPF--------TAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
           G           +++ G  P         T  LGL++IG++    G I V+++  T++P 
Sbjct: 126 GDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPN 185

Query: 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDY 385
           ++AIGD++PGP LAHKA  +G    E +AG    VDY
Sbjct: 186 IFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDY 222

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  103 bits (256), Expect = 7e-26
 Identities = 73/155 (47%), Positives = 90/155 (58%), Gaps = 3/155 (1%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
           + E + +V+G GPGGYVAAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y
Sbjct: 1   AIETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRY 59

Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
            +        G+K  +V +D   +   K   V  LT G+EGL K NKV  VKG   F+  
Sbjct: 60  EQ-AKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA 118

Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT 195
           + V V   +   T    KN IIATGS    L G  
Sbjct: 119 NTVRVVNGDSAQT-YTFKNAIIATGSRPIELVGRR 152

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score =  117 bits (293), Expect = 6e-31
 Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)

Query: 39  SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           SA  E DVVV+GGGPGGY AA  AA  GLK   +E+   LGG CLNVGCIPSKALLH++ 
Sbjct: 2   SADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAA 61

Query: 99  MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
           +  E +   A++G+K+   E+D+  + A KD  VS LT G+ G+ K  KV  ++G G+F+
Sbjct: 62  VIDE-VRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL 120

Query: 159 SPSE 162
            P  
Sbjct: 121 DPHH 124

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 92.7 bits (229), Expect = 4e-22
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHK 364
            + ++ +  R P    +  +K GV     G I V+++  TN+P +YAIGD++  PMLAHK
Sbjct: 150 KNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHK 209

Query: 365 AEEDGVACVEFLAGKHGHVD 384
           A  +G    E  AG   + D
Sbjct: 210 AVHEGHVAAENCAGHKAYFD 229

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE 244
           +VV+G G  G       A  G +V +VE
Sbjct: 9   VVVLGGGPGGYSAAFAAADEGLKVAIVE 36

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (272), Expect = 3e-29
 Identities = 65/122 (53%), Positives = 88/122 (72%), Gaps = 2/122 (1%)

Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
           PGI IDE++IVSSTGAL+L E+PK+L +IG G IGLEMGSV++RLGS+VTVVEF   I  
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 60

Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVL 309
           SMDGE+ K  Q+ L+KQ + F L TKV+    + D   V++ +E     ++  LEA+V+L
Sbjct: 61  SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 120

Query: 310 VS 311
           V+
Sbjct: 121 VA 122

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  104 bits (262), Expect = 9e-28
 Identities = 44/85 (51%), Positives = 63/85 (74%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEK 444
           YD +P V+YTHPE+A VGKTE+ +K  GV   VG FPF A+ RA A +D  G VK++A+ 
Sbjct: 1   YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADA 60

Query: 445 ETDKILGVHIMAPNAGELIHEAAMA 469
           +TD++LGVH++ P+A EL+ + A+A
Sbjct: 61  KTDRVLGVHVIGPSAAELVQQGAIA 85

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score =  104 bits (261), Expect = 9e-28
 Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 2/127 (1%)

Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
           V  LP I  D  RI+ S+GALAL EVP KL++IG G IGLEMG+V++ LGS + VVE   
Sbjct: 1   VTKLPFIPEDP-RIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59

Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307
            ++   D ++ K +Q+  E +    M+ TK V V+   DGV +T E  A   K     D 
Sbjct: 60  GLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFE-GANAPKEPQRYDA 118

Query: 308 VLVSAGR 314
           VLV+AGR
Sbjct: 119 VLVAAGR 125

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score =  108 bits (269), Expect = 1e-27
 Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 16/220 (7%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
            +++IGGGPGGYVAAI+A QLG+ T  +E   ALGGTCLN+GCIPSKAL+H +  +H+A 
Sbjct: 7   TLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQAS 65

Query: 105 HSFASHG--VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
                    +  +S  +D+   +A KD  V  LT G+  L KK+ V  V G+ K +    
Sbjct: 66  RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG-- 123

Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSST------GALALNEVPKK 216
                +E     ++ +++++ATGS    LP     +   +          A+A++E  + 
Sbjct: 124 ---KQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQT 180

Query: 217 LV--VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
            +  V   G +  E       +     V E  A      +
Sbjct: 181 SMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFE 220

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 72.3 bits (176), Expect = 4e-15
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 314 RTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACV 373
           R P T G  L+ + ++ +    I ++ER  T++  V+AIGDV   PMLAH+A   G    
Sbjct: 151 RRPRTKGFNLECLDLKMNG-AAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVA 209

Query: 374 EFLAGKHGHVD 384
           E +AGK    +
Sbjct: 210 EIIAGKARRFE 220

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (261), Expect = 1e-27
 Identities = 53/85 (62%), Positives = 69/85 (81%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEK 444
           Y+ +P V+Y+HPEVA VGKTEEQ+KE G++Y++GKFPF ANSRAK   D EG VKIL + 
Sbjct: 1   YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDS 60

Query: 445 ETDKILGVHIMAPNAGELIHEAAMA 469
           +T++ILG HI+ PNAGE+I EA +A
Sbjct: 61  KTERILGAHIIGPNAGEMIAEAGLA 85

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (273), Expect = 1e-27
 Identities = 41/251 (16%), Positives = 91/251 (36%), Gaps = 20/251 (7%)

Query: 43  ENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY- 100
           E DVVV+G G  G  AA + ++   ++   IE+  + GG     G + S  ++       
Sbjct: 33  ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF 92

Query: 101 -------HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
                  ++   ++             +  ++A+ +  + N     + + K N+V  V  
Sbjct: 93  LDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVT 152

Query: 154 YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV 213
               ++ +  +   ++    V++ K ++ + G D    P      KR+ S      +  +
Sbjct: 153 NWALVAQNHHTQSCMDP--NVMEAKIVVSSCGHDG---PFGATGVKRLKSIGMIDHVPGM 207

Query: 214 PKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVP---SMDGEIRKQFQRSLEK 267
               +      I      V   +   G EV  ++ A  + P   +M    +K  Q +L+ 
Sbjct: 208 KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKA 267

Query: 268 QKMKFMLKTKV 278
             +   +   +
Sbjct: 268 LGLPNAIDGTL 278

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  110 bits (275), Expect = 2e-27
 Identities = 49/343 (14%), Positives = 102/343 (29%), Gaps = 13/343 (3%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKT-TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
            V+V+G G  G  AA + ++ G+     +E    +GG            +   ++     
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGV 60

Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
                +      +  + L    +  D    N+ +   G++ ++ V         +   E+
Sbjct: 61  NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV--EEM 118

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
                   +   +    I+A     +  P        +V               V     
Sbjct: 119 GEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQN 178

Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
            + L   S +      V        +V  + G+  K   +S +    +  L   V  +  
Sbjct: 179 TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKY 238

Query: 284 SGDGVKLTLE--PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN-- 339
           S  GV +  E       +  ++ A + ++ +    F   L   K+     +   + VN  
Sbjct: 239 SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRA-IYQFWPVGVNRY 297

Query: 340 --ERFATNIPGVYAIGDVI--PGPMLAHKAEEDGVACVEFLAG 378
             ++    +  VY  G+          H A   G+   E L  
Sbjct: 298 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  105 bits (261), Expect = 2e-26
 Identities = 95/232 (40%), Positives = 131/232 (56%), Gaps = 21/232 (9%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALL 94
           S + DV+VIG GPGGYVAAIK+AQLGLKT  IEK      + ALGGTCLNVGCIPSKALL
Sbjct: 1   SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60

Query: 95  HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
            SS+ +HEA  SF  HG+    V +D+P M+A+KD+ V NLT G+  L K N VT  +G+
Sbjct: 61  DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120

Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV- 213
           GK ++  +V V   +G + V+  +N+I+A+GS    +P   +    + + +G + L+E  
Sbjct: 121 GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSG-VTLDERG 179

Query: 214 -----------PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
                         +  IG    G  +    +  G  V V E  A     M+
Sbjct: 180 FIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEG--VVVAERIAGHKAQMN 229

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 92.0 bits (227), Expect = 5e-22
 Identities = 34/71 (47%), Positives = 44/71 (61%)

Query: 314 RTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACV 373
           R P T  L     GV  D+ G I V++  AT++PGVYAIGDV+ G MLAHKA E+GV   
Sbjct: 159 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVA 218

Query: 374 EFLAGKHGHVD 384
           E +AG    ++
Sbjct: 219 ERIAGHKAQMN 229

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  100 bits (249), Expect = 5e-26
 Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
             +D+  IV STGAL    VP KL VIGAG IGLE+GSVWARLG+EVTV+E     +P++
Sbjct: 2   APVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV 61

Query: 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
           D ++ K+ Q+ L KQ +K +L  +V G ++    V +    A G +      D ++V+ G
Sbjct: 62  DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKS--QAFDKLIVAVG 119

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score =  101 bits (253), Expect = 4e-25
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D + IGGG  G   +     +G +   +++   LGG+C +  C+P       +     A 
Sbjct: 44  DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR 103

Query: 105 HSFASHGVK-FSSVEVDLPAMMAQKDKAVSNLTRG--IEGLFKKNKVTYVKGYGKF 157
                +     +   V +  ++       +        +   + N    +    K 
Sbjct: 104 TFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKV 159

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 97.7 bits (242), Expect = 1e-23
 Identities = 44/242 (18%), Positives = 76/242 (31%), Gaps = 57/242 (23%)

Query: 195 TIDEKRIVSSTGALALNEVPKK--LVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--- 249
             D   ++ +         P++   + IG G  G    +    +G    +V+    +   
Sbjct: 25  APDGGEVIYNVD----ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80

Query: 250 ------VPSMD---GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK 300
                 VP              R+   Q     +  KVVG+    D  +       G   
Sbjct: 81  CPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMN 140

Query: 301 -----------------------------TILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
                                         + +A  ++++ G  P T  +       E  
Sbjct: 141 FQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELA 200

Query: 332 KM--------GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV 383
           K+        G + VNE   T++P VYA+GD+I GPM   KA + G      + G+   +
Sbjct: 201 KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE--KI 258

Query: 384 DY 385
            Y
Sbjct: 259 SY 260

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 4e-25
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 20/235 (8%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           D +VIGGG GG  +A +AA+LG +   +E    LGGTC+NVGC+P K + +++      M
Sbjct: 5   DYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSE-FM 62

Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
           H  A +G      + +   +  ++D  VS L    +    K+ +  ++G+  F S  +  
Sbjct: 63  HDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKP- 121

Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
             TIE         +I+IATG    +           V +T  L+LN++  +      G+
Sbjct: 122 --TIEVSGKKYTAPHILIATGGMPSTPHE-------RVPNTKDLSLNKLGIQTD--DKGH 170

Query: 225 IGLEMGSVWARLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
           I      V     + V  +    D+   ++   +     R L  +  ++   +K+
Sbjct: 171 I-----IVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKL 220

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (225), Expect = 1e-21
 Identities = 27/85 (31%), Positives = 37/85 (43%)

Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
           I    +      R P T  L L+K+G++TD  G I V+E   TN+ G+YA+GDV    +L
Sbjct: 137 IATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 196

Query: 362 AHKAEEDGVACVEFLAGKHGHVDYD 386
              A   G      L         D
Sbjct: 197 TPVAIAAGRKLAHRLFEYKEDSKLD 221

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 95.3 bits (236), Expect = 3e-24
 Identities = 47/120 (39%), Positives = 73/120 (60%), Gaps = 3/120 (2%)

Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
           P       RI+ STGAL L EVPK LVVIG GYIG+E+G+ +A  G++VT++E A +I+ 
Sbjct: 1   PNFKFSN-RILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS 59

Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
             + ++    ++ L+K+ ++ +      G +   DGV +T E  A GE   ++AD VLV+
Sbjct: 60  GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE--ANGETKTIDADYVLVT 117

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 95.9 bits (237), Expect = 3e-23
 Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 22/215 (10%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK--RGALGGTCLNVGCIPSKALLHSSHMYHE 102
            +V++GGGP GY AA+ AA    +TT +       +GG  +   C+PSK  + S+ +  E
Sbjct: 3   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTE 62

Query: 103 -AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161
                     + F   ++ LP + A+     +  +  I        V  + G G+ I  +
Sbjct: 63  LRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDST 122

Query: 162 E------VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---------VSSTG 206
                  +     +G  +  +   +++ATG+  + LP  ++              +    
Sbjct: 123 PGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGN 182

Query: 207 ALALNEVPKKLV--VIGAGYI--GLEMGSVWARLG 237
            L ++ V + L   +  AG     L + SV A  G
Sbjct: 183 YLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQG 217

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.2 bits (152), Expect = 6e-12
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH 382
           +++G++  +   + V+    T   G+YA GD      LA  A   G   +    G+   
Sbjct: 172 ERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVS 230

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 94.6 bits (234), Expect = 1e-22
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCI---------EKRGALGGTCLNVGCIPSK 91
           S   D+VVIG G GG  A   AA L  K   +             ALGGTC+NVGC+P K
Sbjct: 1   SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60

Query: 92  ALLHSS-HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEG-LFKKNKVT 149
            ++  + +M      +     +   SV  +  A++A K+KAVS +    EG       +T
Sbjct: 61  LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120

Query: 150 YVKGYGKF----ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSST 205
           + +G+G            S D        +  + I++ATGS  +   GI +   +     
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEVPRSQ----- 174

Query: 206 GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--VPSMDGEIRKQFQR 263
             L L +    + V   G I ++  S    + +   + +    +   P    E       
Sbjct: 175 -TLQLEKAG--VEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDT 230

Query: 264 SLEKQKMK 271
               +   
Sbjct: 231 VFANKPRA 238

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 88.5 bits (218), Expect = 2e-20
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 297 GGEKTILEADVVLVSAGRTP--------FTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
                 L+ + +L++ G  P         +  L L+K GVE  K G I V+    TN+  
Sbjct: 144 SAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDN 203

Query: 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
           +YAIGDV    ML   A  +G A V+ +    
Sbjct: 204 IYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 235

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.8 bits (222), Expect = 3e-22
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
           PG   D++  +SS    +L   P K +V+GA Y+ LE     A +G +VTV+   + ++ 
Sbjct: 1   PG---DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR 56

Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKTILEADV 307
             D ++  +    +E+  +KF+ +     ++    G    +K+T +     E    E + 
Sbjct: 57  GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNT 116

Query: 308 VLVSAG 313
           VL++ G
Sbjct: 117 VLLAVG 122

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 89.4 bits (221), Expect = 7e-22
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP----------------FLANSRAKAI 431
            P  ++TH EV+ +G  EE+ +  G E    K P                 +  +  K  
Sbjct: 4   YPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGT 63

Query: 432 DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAAMA 469
               G  KI+ + +T K+LG H +   A +      + 
Sbjct: 64  AHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVL 101

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 87.7 bits (217), Expect = 2e-21
 Identities = 32/82 (39%), Positives = 47/82 (57%)

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           +PGV YT PEVA VG+TE   K    +     FP+ A+ RA A    +   K++ + ET 
Sbjct: 4   IPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETG 63

Query: 448 KILGVHIMAPNAGELIHEAAMA 469
           +I+G  I+ PN G++I E  +A
Sbjct: 64  RIIGGGIVGPNGGDMIGEVCLA 85

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 90.9 bits (224), Expect = 2e-21
 Identities = 45/243 (18%), Positives = 77/243 (31%), Gaps = 18/243 (7%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT---------CLNVGCIPSK 91
           S   D+VVIG G GG  AA  AA L  K   +     + G          C+NVGC+P K
Sbjct: 1   SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKK 60

Query: 92  ALLHSSHMYHEAMHSFASHGVKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLF-KKNKV 148
            ++  +          A  G +F       +   ++A KD+AV N+ +  + +F     +
Sbjct: 61  LMVTGAQYMEHLRE-SAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGL 119

Query: 149 TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
            +  G+G   S      + +    +      +     ++   L   +        S    
Sbjct: 120 EFFLGWGSLESK-----NVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTK 174

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
            L      +++   G    E           +  V     + P    E            
Sbjct: 175 DLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT 234

Query: 269 KMK 271
             K
Sbjct: 235 PRK 237

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 70.5 bits (171), Expect = 2e-14
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
           GR+P T  L L   GV     G + V+E   TN+  +YAIGDV    ML   A  +  A 
Sbjct: 168 GRSPRTKDLQLQNAGVMIKN-GGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAAL 226

Query: 373 VEFLAGKHGH 382
           V+ + G    
Sbjct: 227 VDTVFGTTPR 236

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.4 bits (225), Expect = 6e-21
 Identities = 30/334 (8%), Positives = 71/334 (21%), Gaps = 34/334 (10%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC---------LNVGCIPSK 91
            +E DV+V+G G    + +   +  G K   +++    GG                +   
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 92  ALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYV 151
                               +  +   V +             +  G             
Sbjct: 64  PPETMGRGRDW-NVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 152 KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
               + ++      + +         K ++     D          + +  S        
Sbjct: 123 STETEALAS-----NLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKF 177

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-------------DIVPSMDGEIR 258
           ++ + ++      + L     +       T+                         GE+ 
Sbjct: 178 DLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELP 237

Query: 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318
           + F R        +ML   V  + +    V          E  +     ++      P  
Sbjct: 238 QGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-----EGEVARCKQLICDPSYVPDR 292

Query: 319 AGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
             +                    F T    +  I
Sbjct: 293 VPIDDGSESQVFCSCSYD-ATTHFETTCNDIKDI 325

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 85.2 bits (210), Expect = 1e-20
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256
               ++SST ALA   +P+ LVV+G GYIGLE+G  + +LG++V+VVE    I+P+ D E
Sbjct: 4   LGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSE 63

Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
           +      SL+K  +   L   V G +   +G  L  +    G +  LEAD VLV+ G
Sbjct: 64  LTAPVAESLKKLGIALHLGHSVEGYE---NGCLLAND--GKGGQLRLEADRVLVAVG 115

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.5 bits (215), Expect = 3e-20
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK--------RGALGGTCLNVGCIPSKALLHS 96
           D+++IGGG GG  AA +AA+   K   ++            LGGTC+NVGCIP K +  +
Sbjct: 5   DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQA 64

Query: 97  SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
           + +      S         +V+ D   M       + +L  G     ++ KV Y   YGK
Sbjct: 65  ALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK 124

Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190
           FI P ++     +G   V   +  +IATG   + 
Sbjct: 125 FIGPHKIMATNNKGKEKVYSAERFLIATGERPRY 158

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.7 bits (156), Expect = 2e-12
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAGK 379
            +K G+IPV +   TN+P +YAIGD++ G + L   A + G    + L G 
Sbjct: 179 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGG 229

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 11/57 (19%), Positives = 19/57 (33%)

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
           L++IG G  GL      A+   +V V++F        +  +           K    
Sbjct: 6   LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMH 62

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 87.6 bits (215), Expect = 2e-19
 Identities = 43/363 (11%), Positives = 98/363 (26%), Gaps = 37/363 (10%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH----MYH 101
           V VIG G  G  AA K    GL  T  E  G  GG   +V           ++       
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEG 62

Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-- 159
           +      S G++                     L         K+         + +   
Sbjct: 63  DVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEP 122

Query: 160 -PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLV 218
              +    +    +            G +V                  +L+++    +L 
Sbjct: 123 ILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELW 182

Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ---------- 268
            +   +  + +G++ ++L  +    +       +   +          +           
Sbjct: 183 NLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR 242

Query: 269 KMKFMLKTKVVGVDLSGDGV------KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322
           + +  L ++V+ +  S           +        +      D V+++A      + + 
Sbjct: 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKS-MK 301

Query: 323 LDKIG-----------VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVA 371
           + K G              +    +   ++   N+PG++  G+   G  +  KA   G  
Sbjct: 302 IAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSV-GKALSSGCN 360

Query: 372 CVE 374
             +
Sbjct: 361 AAD 363

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.7 bits (196), Expect = 9e-19
 Identities = 36/82 (43%), Positives = 54/82 (65%)

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           +P VV++ PE ASVG  E+Q K+ G++    KFPF AN RA A++D +G +K++  KE  
Sbjct: 2   IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDG 61

Query: 448 KILGVHIMAPNAGELIHEAAMA 469
            I+G  I+ PNA ++I E  +A
Sbjct: 62  VIIGAQIIGPNASDMIAELGLA 83

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250
           +PG        ++S G   L E+P + V++GAGYI +EM  + + LGS+ +++     ++
Sbjct: 3   IPGA----SLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 58

Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK----TILEAD 306
            S D  I       LE   ++ +  ++V  V  +  G+++++  A  G       I + D
Sbjct: 59  RSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118

Query: 307 VVLVSAG 313
            +L + G
Sbjct: 119 CLLWAIG 125

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 76.8 bits (188), Expect = 9e-18
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKAIDDAEGIVKILA 442
           Y  +P VV++HP + +VG TE Q +E   +   +V K  F A   A         +K++ 
Sbjct: 1   YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 60

Query: 443 EKETDKILGVHIMAPNAGELIHEAAM 468
               +KI+G+H +     E++   A+
Sbjct: 61  VGSEEKIVGIHGIGFGMDEMLQGFAV 86

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 77.1 bits (189), Expect = 9e-18
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRA-KAIDDAEGIVKILAE 443
           + KV   V++ P +   G  EE   +   +  V +  F             + +V+I+  
Sbjct: 1   HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTN 60

Query: 444 KETDKILGVHIMAPNAGELIHEAAM 468
               ++LGVH++  ++ E+I   A+
Sbjct: 61  HADGEVLGVHMLGDSSPEIIQSVAI 85

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 77.6 bits (190), Expect = 1e-17
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 20/152 (13%)

Query: 183 ATGSD---VKSLPGITIDEKRIVSSTGALALNEVPKKLVVI---GAGYIGLEMGSVWARL 236
             G++      +PG        ++    +   +   K VVI      ++   +    A  
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATA 63

Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK------- 289
           G EVT+V                   R L +  ++ +       ++     +        
Sbjct: 64  GHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGS 123

Query: 290 -------LTLEPAAGGEKTILEADVVLVSAGR 314
                        A      +E D +++  GR
Sbjct: 124 KRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.7 bits (188), Expect = 2e-17
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYR---VGKFPFLANSRAKAIDDAEGIVK-I 440
           YD VP  V+T  E    G +EE+  E   E        F +       + D+ +   K I
Sbjct: 1   YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60

Query: 441 LAEKETDKILGVHIMAPNAGELIHEAAM 468
              K+ ++++G H++ PNAGE+    A 
Sbjct: 61  CNLKDNERVVGFHVLGPNAGEVTQGFAA 88

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 29/82 (35%), Positives = 42/82 (51%)

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           V   V+T PE+A+VG  +  +    V  R    P   N+RAK  +   G VKI   + T 
Sbjct: 4   VAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTG 63

Query: 448 KILGVHIMAPNAGELIHEAAMA 469
            ++G  ++AP A ELI   A+A
Sbjct: 64  VVIGGVVVAPIASELILPIAVA 85

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVG------KFPFLANSRAKAIDDAEGIV 438
           Y  +P V+++HP + ++G +EE   ++  +  V          F +    +     +  +
Sbjct: 1   YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60

Query: 439 KILAEKETDKILGVHIMAPNAGELIHEAAM 468
           K++   + + I G+HI+  NA E++   A+
Sbjct: 61  KLVCVGKDELIKGLHIIGLNADEIVQGFAV 90

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 75.2 bits (184), Expect = 4e-17
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA---RLGSEVTVVEFAADIVPSMDGE 256
             ++S  A  L+E PK+ + +G GYI +E   ++      G +V +      I+   D E
Sbjct: 4   LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE 63

Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314
           +RKQ    L    +          V  + DG +  +     G +   + DVV+++ GR
Sbjct: 64  LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVF--ESGAE--ADYDVVMLAIGR 117

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 74.8 bits (183), Expect = 4e-17
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 8/123 (6%)

Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250
           +PG+    +  + S G  AL  +P+++ V+GAGYIG+E+G V   LG++  + E     +
Sbjct: 2   IPGV----EYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL 57

Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
           PS D  I +     +  +  +         V  + DG  LTLE   G        D ++ 
Sbjct: 58  PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDG-SLTLELEDGRS---ETVDCLIW 113

Query: 311 SAG 313
           + G
Sbjct: 114 AIG 116

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 76.0 bits (185), Expect = 1e-16
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 19/184 (10%)

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
              +V++G G  G+E+       G E  +       V         +   + +       
Sbjct: 3   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62

Query: 274 LK--------TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDK 325
           L+           +        +    +     +   L+ D ++++ G  P      L  
Sbjct: 63  LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 326 IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM----------LAHKAEEDGVACVEF 375
                     I +NE   T+ P + A+GD                    A E        
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181

Query: 376 LAGK 379
           L GK
Sbjct: 182 LCGK 185

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 73.3 bits (179), Expect = 1e-16
 Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 13/125 (10%)

Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW---ARLGSEVTVVEFAA 247
           +PGI    +  +SS  A  L E P++++ +G G+I +E   ++        +VT+     
Sbjct: 1   IPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56

Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD 306
            I+   D  +R++  + L    ++ + K     V+L+ DG K +T E    G+K  ++ D
Sbjct: 57  MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE---SGKK--MDFD 111

Query: 307 VVLVS 311
           +V+++
Sbjct: 112 LVMMA 116

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 4e-16
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILA 442
           Y+ +P VV++HP + +VG TE++          +     F     A      + ++K++ 
Sbjct: 1   YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60

Query: 443 EKETDKILGVHIMAPNAGELIHEAAM 468
             + +K++G+H+      E++   A+
Sbjct: 61  ANKEEKVVGIHMQGLGCDEMLQGFAV 86

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 75.7 bits (185), Expect = 4e-16
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 31/178 (17%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL----------NVGCIPS 90
           S  ++ ++IG G  G   A + A+LG   T  +    +G   L          N+   P+
Sbjct: 2   SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPA 61

Query: 91  KALLHSSHMYHEAMHSF---------ASHGVKFSSVEVDLPAMMAQKDKAVSNLTR---- 137
             L  + H    A+  +         A  G+ +   E+         ++ V  L      
Sbjct: 62  HYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDK 121

Query: 138 -GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI 194
            G + L +    + V    +  +  +V    ++  +T  + KN+I+ATG    S+PG+
Sbjct: 122 YGAKILLR----SEVSQVERIQNDEKV-RFVLQVNSTQWQCKNLIVATGG--LSMPGL 172

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.4 bits (169), Expect = 4e-15
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
           +  V +T PEV  VGKT EQ  + G++  V +FPF AN RA +++   G V+++A ++  
Sbjct: 4   IAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNH 63

Query: 448 KILGVHIMAPNAGELIHEAAMA 469
            ILG   +     EL    A +
Sbjct: 64  LILGWQAVGVAVSELSTAFAQS 85

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 5e-15
 Identities = 38/295 (12%), Positives = 75/295 (25%), Gaps = 22/295 (7%)

Query: 41  SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC---------LNVGCIPSK 91
             + DV+V+G G    + +   +  G K   I+K+   GG                 P  
Sbjct: 3   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62

Query: 92  ALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYV 151
                S    +   +         +       ++        +  +       K    Y 
Sbjct: 63  KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYK 122

Query: 152 KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
               +  + S   +   E        + I      D+ +  G+ +D+  +        L 
Sbjct: 123 VPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLG 182

Query: 212 EVPKKLVVIGAGYIGLE----------MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF 261
              K+ +         +             +     S     +          GE+ + F
Sbjct: 183 NSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGF 242

Query: 262 QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
            R        +ML T +  V    D  K        G     +A +V+      P
Sbjct: 243 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGT---FKAPLVIADPTYFP 294

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250
           + GI    +  +SS     + E  KK+ ++G+GYI +E+ +V  RLG +  +      I+
Sbjct: 4   VKGI----ENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL 58

Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
              D  +    +  ++K  +  +    VV +    D   L++  + G  +     D V+ 
Sbjct: 59  RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK-NLSIHLSDG--RIYEHFDHVIY 115

Query: 311 S 311
            
Sbjct: 116 C 116

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 396 PEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIM 455
            + AS G  E   ++LG E +               D  +   K++ + ET +ILG  +M
Sbjct: 13  YKFASTGINEVMAQKLGKETKAVTVVE-DYLMDFNPDKQKAWFKLVYDPETTQILGAQLM 71

Query: 456 APN-AGELIHEAAMA 469
           +       I+  ++A
Sbjct: 72  SKADLTANINAISLA 86

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 67.3 bits (163), Expect = 2e-14
 Identities = 18/102 (17%), Positives = 38/102 (37%)

Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
           E    +VV+G     +E G  +   G    ++     +    D E R      +++Q M+
Sbjct: 20  EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGME 79

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
            +  + V  ++   +G    +       +  +E D V +  G
Sbjct: 80  IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 69.4 bits (168), Expect = 1e-13
 Identities = 48/345 (13%), Positives = 94/345 (27%), Gaps = 18/345 (5%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC--LNVGCIPSKALLHSSHMYHE 102
           +V V+GGG  G   A      G     +E    LGG      +     +   +S      
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREP 61

Query: 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
           A  + A+       +    PA   +       L               +    +     E
Sbjct: 62  ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGE 121

Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
           +       G             G     +    +           L++      LV +  
Sbjct: 122 LFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMER 181

Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVP-----SMDGEIRKQFQRSLEKQKMKFMLKTK 277
            +  L +G++ A+       +             + DG ++               +  +
Sbjct: 182 EHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGAR 241

Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-------TPFTAGLGLDKIGVET 330
           V G+     G +L +E    G +  L    V+++A          P    L     G+  
Sbjct: 242 VEGLAREDGGWRLIIE--EHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYN 299

Query: 331 DK-MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE 374
              + R+   +     +PG++ IG+   G  L      +     +
Sbjct: 300 LGHLERVAAIDAALQRLPGLHLIGNAYKGVGLND-CIRNAAQLAD 343

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 66.7 bits (161), Expect = 1e-13
 Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 15/176 (8%)

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
              +VV+GAG   +   +   + G +  +     +     D     +   +    +   +
Sbjct: 3   KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62

Query: 274 LKTKVVGVDL----SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL-DKIGV 328
              +   V+     +           A  +   L    ++++ G  P             
Sbjct: 63  DCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122

Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPM----------LAHKAEEDGVACVE 374
                  I V+    T  P VYA+GDV                   A+  G+A   
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVAR 178

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 24/195 (12%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           VVV+G G        +  Q G +                                     
Sbjct: 6   VVVLGAGLASVSFVAELRQAGYQGLITVV----------------------GDEAERPYD 43

Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
                    +  + +   +  ++   V  L       F     T     G+ +    + +
Sbjct: 44  RPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVL 103

Query: 166 DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYI 225
            T      V+    +  A G       GI +D     +     AL +V ++   +   + 
Sbjct: 104 ATGAAPRAVLANDALARAAGLACDD--GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFE 161

Query: 226 GLEMGSVWARLGSEV 240
            +E  S     G  V
Sbjct: 162 RIETWSNAQNQGIAV 176

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 5e-13
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 214 PKKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQ 268
            K + +IG G++G E+     R    LG+EV  +      +   +   +       + ++
Sbjct: 37  VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 96

Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
            +K M    V  V +S   + + L+     +   +E D ++ + G
Sbjct: 97  GVKVMPNAIVQSVGVSSGKLLIKLK-----DGRKVETDHIVAAVG 136

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 45/350 (12%), Positives = 89/350 (25%), Gaps = 23/350 (6%)

Query: 33  LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
              G  + S+   VV++G G  G  AA   A  G + T +E     GG         +  
Sbjct: 20  ARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGW 79

Query: 93  LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
             +   M     H              +       +    S          K  +    +
Sbjct: 80  YANLGPMRLPEKHRIV----------REYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGE 129

Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
                         +  G +     +  +     ++K      I  K    ST    + E
Sbjct: 130 VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKE 189

Query: 213 V---PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269
               P  + +IG          V      +   +         +   + K         +
Sbjct: 190 GDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQ 249

Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV-----SAGRTPFTAGLGLD 324
            K     +V+ +  +   V +  E  +    ++  AD V+V     +     F   L   
Sbjct: 250 DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSV-TADYVIVCTTSRAVRLIKFNPPLLPK 308

Query: 325 K---IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGV 370
           K   +            ++    +   +Y  G+             + G+
Sbjct: 309 KAHALRSVFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGL 358

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.0 bits (157), Expect = 4e-12
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 12/194 (6%)

Query: 43  ENDVVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
            +DV+++G G  G  AA   A+    LK   IE   A GG     G + S  ++      
Sbjct: 50  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL 109

Query: 101 HEAMHSF----ASHGVKFSSVEVDLPAMMAQKDKA----VSNLTRGIEGLFKKNKVTYVK 152
                          V      + +  ++++  +     + N T   + + +        
Sbjct: 110 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEV 169

Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
                +  +  ++ T   G       N+I   G        ++     I+S+TG      
Sbjct: 170 TVAGVV--TNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFG 227

Query: 213 VPKKLVVIGAGYIG 226
                 ++      
Sbjct: 228 AFCAKRIVDIDQNQ 241

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 12/141 (8%), Positives = 28/141 (19%), Gaps = 3/141 (2%)

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
            K L +                           A +V +     +    +      +  +
Sbjct: 139 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIEL 198

Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
              K  G         + L                +V   +     G+   K        
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGM---KGLDMNHAE 255

Query: 334 GRIPVNERFATNIPGVYAIGD 354
             + ++      +  +Y  G 
Sbjct: 256 HDVVIHSGAYAGVDNMYFAGM 276

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 60.2 bits (144), Expect = 3e-11
 Identities = 26/179 (14%), Positives = 47/179 (26%), Gaps = 14/179 (7%)

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
            +K+VV+G G  G              EVT++E   D              R LE  K  
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 272 FMLKTKVVGVDLSGDGVKLTL--EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
           +          +      +    +            D  +V+ G       +      + 
Sbjct: 62  YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121

Query: 330 -------TDKMGRIPVNERFATNIPGVYAIGDVI---PGPMLAHKAEEDGVACVEFLAG 378
                        + +    ++   G++ IGD     P P   + A   G      +  
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVV 180

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 58.6 bits (140), Expect = 8e-11
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 14/172 (8%)

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVE----FAADIVPSMDGEIRKQFQRSLEKQKMK 271
           K+V++G G  G E+    ++   EVTV++                     +  L    + 
Sbjct: 2   KVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
           +  K  +         +          EK  +  D ++++ G           + G+ T 
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVD---LARRSGIHTG 117

Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPM----LAHKAEEDGVACVEFLAGK 379
           +   I +++ F T+   VYAIGD           A  A E      + L G+
Sbjct: 118 RG--ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 167

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query: 190 SLPGI--TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
            + G    +  + I  +       E   + ++IG G+IGLE+    A  G  V ++    
Sbjct: 6   QIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLI-HRG 64

Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307
            +   +D E+    +  LE+  +KF L ++++  +   +GV              +E  V
Sbjct: 65  AMFLGLDEELSNMIKDMLEETGVKFFLNSELLEAN--EEGVLT--------NSGFIEGKV 114

Query: 308 VLVSAG 313
            + + G
Sbjct: 115 KICAIG 120

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 188 VKSLPGITIDEKRIVSSTGALALNEV---PKKLVVIGAGYIGLEMGSVWARLGSEVTVVE 244
           + +L G T+    + +   A  +        +L+++G G IGLE+ +     G  V++VE
Sbjct: 1   LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 245 FAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTIL 303
               ++  +    +     R    Q +    +  V G       V L        + T +
Sbjct: 61  TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV--DGVVLLD-------DGTRI 111

Query: 304 EADVVLVSAG 313
            AD+V+V  G
Sbjct: 112 AADMVVVGIG 121

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 58.5 bits (140), Expect = 2e-10
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 20/177 (11%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL----------- 93
           DV+VIGGGP G +AAI AA+ G     ++K   LG      G                  
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 94  LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
           +  +  +  +  S  ++    +  E     +  +    +  ++   + +           
Sbjct: 64  IPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDL 123

Query: 154 YGKFISPSEVSVDTIEGGNTVV---------KGKNIIIATGSDVKSLPGITIDEKRI 201
             K  + + V     E G T           +  +++IA G       G T D    
Sbjct: 124 GVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAW 180

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE-IRKQFQRSLEKQKMKF 272
             +LVVIG GYIGLE+ +   +    VT+++ AA ++  +    +   ++    +  +  
Sbjct: 35  DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDI 94

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
              T+V G ++S D  K+T      G +  L AD+V+   G
Sbjct: 95  RTGTQVCGFEMSTDQQKVTAVLCEDGTR--LPADLVIAGIG 133

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 56.4 bits (134), Expect = 7e-10
 Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 32/194 (16%)

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM---------------DGEIRKQ 260
           K++V+G+ + G E       L  +  +  +      S                   +R  
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320
               +E + +     T++  +      V +       GE+ +   D +++S G  PF   
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVK--DLVSGEERVENYDKLIISPGAVPFELD 119

Query: 321 LGLDKIGVETDKM-----GRIPVNERFATNIPGVYAIGDVIPGP----------MLAHKA 365
                       +     G I  +E   T+ P V+A+GD                LA  A
Sbjct: 120 GVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNA 179

Query: 366 EEDGVACVEFLAGK 379
            + G   V+ L   
Sbjct: 180 RKQGRFAVKNLEEP 193

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 46/221 (20%)

Query: 37  FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHS 96
           F    +++ V+++G GP G  AA    + G      +    +GG    V  +P       
Sbjct: 43  FRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSY 102

Query: 97  SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
              Y E                                    I  L KKNK + +    K
Sbjct: 103 HRDYRETQ----------------------------------ITKLLKKNKESQLALGQK 128

Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGA---LALNEV 213
            ++  +                 +IIATG+   +L       +   +         + + 
Sbjct: 129 PMTADD---------VLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDA 179

Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
               ++  A + G  +         ++ +      I     
Sbjct: 180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWGTP 220

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 38 ASASDEN-DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82
          ASA  +  DVVV+G G  G+ AAI A   G K   IEK   +GG  
Sbjct: 10 ASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA 55

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 10/153 (6%)

Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE----------FAADIVPSMDGEIRKQFQRSLE 266
           ++++G+G  G       AR G    ++              +   S+     ++   +L+
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 267 KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI 326
               ++ +               +          +        +              + 
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123

Query: 327 GVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
            VE ++MG I ++ +  TN+ GV+A GD    P
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP 156

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 6e-08
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEA 103
           DV+++G GP G  AAI +A+ G++T  + +R G      +++    S        +    
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 104 MHSFASHGVKF 114
                 + V  
Sbjct: 63  KVHVDEYDVDV 73

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          A  S+   V+V+G G  G+ A++ A + G     ++K    GG 
Sbjct: 14 AGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV---GCIPSKALLHSSHMYH 101
           D +++G G  G V A +  +L  K   IEKR  +GG        G    K   H  H   
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKN 146
           + +  + +  V+F+       A+   K   +         ++   
Sbjct: 63  KYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVK 107

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DV+V+G G  G  A  +  +LG     IE  G +GG        P       S  Y  + 
Sbjct: 9   DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW-YWNRYPGARCDIESIEYCYSF 67

Query: 105 H 105
            
Sbjct: 68  S 68

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 54.0 bits (128), Expect = 4e-09
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 3/164 (1%)

Query: 213 VPKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
              K+ ++GAG   +   S  ARLG S++T+ E   + V  +      QF+   +    +
Sbjct: 3   YSAKIALLGAGPASISCASFLARLGYSDITIFE-KQEYVGGLSTSEIPQFRLPYDVVNFE 61

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
             L   +    + G  +          ++   +A  + +          +      ++ +
Sbjct: 62  IELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFN 121

Query: 332 KMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE 374
           +     V+     T+ P V+A GD++       ++  DG     
Sbjct: 122 RWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASW 165

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 26/84 (30%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
           + ++G GP     A   A+LG     I ++    G          +      +   E M 
Sbjct: 7   IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMK 66

Query: 106 SFASHGVKFSSVEVDLPAMMAQKD 129
                 +   S+  +   +   K+
Sbjct: 67  DLGVKIICGKSLSENEITLNTLKE 90

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 17/63 (26%), Positives = 23/63 (36%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
           DVVV+GGG  G  AA      GL    +E R  +GG    +     K +           
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 60

Query: 105 HSF 107
           +  
Sbjct: 61  NRI 63

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.0 bits (126), Expect = 9e-09
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 1/151 (0%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
            + ++G GP  + AAI AA+  LK    E   A            +              
Sbjct: 7   RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 66

Query: 105 HSFASHGVK-FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
                   K        +      K    S   +             +   G      E 
Sbjct: 67  VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEP 126

Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGI 194
           +   ++GG  +     ++   G+   S+PG+
Sbjct: 127 ATKFLDGGVELDSDGYVVTKPGTTQTSVPGV 157

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 19/164 (11%)

Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD--------------- 254
           L     +L ++G+G          AR   +  + E       +                 
Sbjct: 1   LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGF 60

Query: 255 --GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312
             G +  +      KQ  +F        V       K              +A ++ + A
Sbjct: 61  PEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILA-DAVILAIGA 119

Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNE-RFATNIPGVYAIGDV 355
                         GVE D  G +        T++PGV+A GDV
Sbjct: 120 VAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDV 163

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 17/44 (38%), Positives = 21/44 (47%)

Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
          A   +  DVV+IG G  G  AA+ A   G K   +EK    GG 
Sbjct: 18 AGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK-RGALGGTCLNVGCIPSKALLHSSHMYHEA 103
            V+++G G  G   A   AQ G++   + +   A+          P       S +    
Sbjct: 4   QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPF----LPPKPPFPPGSLLERAY 59

Query: 104 MHSF 107
               
Sbjct: 60  DPKD 63

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE-IRKQFQRSL 265
              ++     +VVIG+GYIG+E    +A+ G +VTV++     +     +         +
Sbjct: 23  QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 82

Query: 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
           E   +       V   +  G   K+        +K   +AD+V+V+
Sbjct: 83  EANNITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVA 122

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          D +VIGGG  G  AA+   Q GL T  +        
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 21/159 (13%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVE------------FAADIVPSMDGEIRKQFQ 262
            KL+++G+G  G       AR   +  ++                +     +        
Sbjct: 6   SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLM 65

Query: 263 RSLEKQKMKF---MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE---ADVVLVSAGRTP 316
             + +   KF   ++   +  VDL     +L  +        ++    A     S     
Sbjct: 66  ERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAI 125

Query: 317 FTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
           F   L L+   ++              T+IPGV+A GDV
Sbjct: 126 FEGQLELENGYIKVQS---GIHGNATQTSIPGVFAAGDV 161

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
            ++++G GP GY AA+ AA+  L+   I      GG       + +     +       M
Sbjct: 7   KLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVENWPGDPNDLTGPLLM 65

Query: 105 HSFASHGVKF 114
                H  KF
Sbjct: 66  ERMHEHATKF 75

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 49.0 bits (116), Expect = 5e-07
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC-----LNVGCIPSKALLHSSHMY 100
           ++++G G  G V   + A+ G +   I++R  +GG            +      H  H  
Sbjct: 5   ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTD 64

Query: 101 HEAMHSFASHGVKF 114
           +E + ++ +   + 
Sbjct: 65  NETVWNYVNKHAEM 78

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 41 SDENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLNVGCIPSKAL 93
          ++E DVV++G GP G  AA +  QL       L+   +EK   +G   L+  C+  +A 
Sbjct: 30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF 88

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCL 83
          E D+++IGGG  G  AA +AA      GLK T +EK        +
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV 65

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
           V++IG G  G  AA +    G+  T +E R  +GG
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (107), Expect = 6e-06
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIPSKALLHSSHMYHEA 103
           DV++IG G  G   A++ A    +   + K     G T    G I +      S   H  
Sbjct: 9   DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVE 67

Query: 104 MHSFASHG 111
               A  G
Sbjct: 68  DTLIAGAG 75

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86
          DV+V+G G  G  A  + A+ G+KT  ++          + G
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHG 46

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
          E D VVIG G  G  AA++ +Q G     + K      
Sbjct: 7  EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIPSKALLHSSHMYHEA 103
           + VVIGGG  G   A   A+    T   E     G  T    G + + A       + + 
Sbjct: 6   EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDF 65

Query: 104 MHSFASH 110
                  
Sbjct: 66  AMHSQRL 72

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG 80
          + D+ ++G G  G  AAI AAQ     K   I K   +  
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS 44

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 46 VVVIGGGPGGYVAAI--KAAQLGLKTTCIEKRGALGGT 81
          + +IG GP G V A    A +   + T  E+RG+ GG 
Sbjct: 7  IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 44

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
           V +IG GP G +      + G+    +E++
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 4/146 (2%)

Query: 33  LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
                  A  + ++ V+G GP G   AI AA  G + T  +    +GG       IP K 
Sbjct: 33  TKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE 92

Query: 93  LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKD---KAVSNLTRGIEGLFKKNKVT 149
             + +  Y+  M       +K +            +      + N       +     V 
Sbjct: 93  EFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIPNRALAQPLIDSGKTVH 152

Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVV 175
            + G        +      +G    +
Sbjct: 153 LI-GGCDVAMELDARRAIAQGTRLAL 177

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
          + + V+GG   G  AA+     G+     E+ 
Sbjct: 5  DRIAVVGGSISGLTAALMLRDAGVDVDVYERS 36

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
            L  +   ++V+GAG    +  +   R G+    + F      ++     +      EK 
Sbjct: 40  PLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF-VNIRAVPEEVELAKEEKC 98

Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAG---------GEKTILEADVVLVSAG 313
           +    L  + V V          +               +   L+ADVV+ + G
Sbjct: 99  EFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 6/148 (4%)

Query: 46  VVVIGGGPGGYVAA--IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
           + V+G GP G+  A  +            EK+    G            + +  + + + 
Sbjct: 4   ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQT 63

Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT----YVKGYGKFIS 159
             S          V  D+     Q       L+ G E   +    +       G    + 
Sbjct: 64  ARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNME 123

Query: 160 PSEVSVDTIEGGNTVVKGKNIIIATGSD 187
              V V  +     V +G   +I T   
Sbjct: 124 GRVVDVPGLYCSGWVKRGPTGVITTTMT 151

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 46  VVVIGGGPGGYVAAIKAAQLGLKT-------TCIEKRGALGGTCLNVGCIPSKALLHSSH 98
           + ++G GP  + AA    +    T         +E      G  +  G  P    + S  
Sbjct: 5   IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG-LVRSGVAPDHPKIKSIS 63

Query: 99  MYHEAMH 105
              E   
Sbjct: 64  KQFEKTA 70

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 47/162 (29%)

Query: 191 LPGITIDEKRIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV------ 243
           + GI  D  +++S    L     V  K+ +IG G IG +     ++ G   +        
Sbjct: 7   IDGI--DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCN 64

Query: 244 --------------------------------EFAADIVPSMDGEIRKQFQRSLEKQKMK 271
                                             A+     +        + +L  + +K
Sbjct: 65  EWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVK 124

Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
            +       +D   DG+ + +     GE  +L  D V++ AG
Sbjct: 125 MIPGVSYQKID--DDGLHVVIN----GETQVLAVDNVVICAG 160

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
          +  D    +VIG G GG VAA++  Q G+ T  +E 
Sbjct: 3  ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 38

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
          D+++ G G GG   A+   Q G+    + + 
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLES 33

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 45  DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL----GGTCLNVGCI----PSKALLHS 96
            +V+IG G  G   A +    G     +  +G L    G T    G +    PSK +   
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASF 62

Query: 97  SHMYHEAMHSFASHG 111
           +    E + S    G
Sbjct: 63  AKYTVEKLLSLTEDG 77

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 45 DVVVIGGGPGGYVAAIKAAQL-----GLKTTCIEKR 75
          DV+++G GP G +AA   ++       LK   I+KR
Sbjct: 9  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 44

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
            VVIG G G  V+A++  + G++T  +E 
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 15/104 (14%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVV--EFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
           K++++IG G +GL         G ++T+V  +    I+P     I+ + Q    +   +F
Sbjct: 14  KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRF 73

Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
           +        +   + ++   +      +   +A  ++++     
Sbjct: 74  INPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDH 117

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 10/58 (17%), Positives = 23/58 (39%)

Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
           ++ + G GY+G       +  G EV  V+ ++  +  ++       +  LE    +  
Sbjct: 2   RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
             +  VVV+G G  G  +A+  A+ G     + +      +
Sbjct: 3  MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	100.0
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	100.0
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	100.0
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.98
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.97
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.97
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.97
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.97
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.96
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.96
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.96
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.95
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.94
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.87
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.85
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.84
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.84
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.84
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.83
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.82
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.81
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.8
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.8
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.79
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.79
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.79
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.79
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.79
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.78
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	99.78
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.77
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.77
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.77
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.76
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	99.76
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.75
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.75
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.73
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.72
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	99.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.71
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.71
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.7
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	99.68
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.64
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.63
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.63
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.63
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.62
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.62
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.59
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	99.54
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.54
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.52
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.51
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.51
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.46
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.42
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.39
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.36
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.35
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.31
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.3
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.28
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.27
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.26
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.25
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.25
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.24
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.24
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.21
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.21
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.18
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.17
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.16
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.16
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.12
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.07
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.07
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.07
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.07
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.06
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.05
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.05
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.03
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.03
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.02
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.0
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.99
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.94
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.93
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.93
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.92
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.89
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.86
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.84
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.82
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.82
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.81
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.79
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.76
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.75
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.75
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.73
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.71
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.71
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.68
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.66
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.65
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.64
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.64
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.63
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.62
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.57
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.57
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.56
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.52
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.48
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.47
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.39
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.36
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.32
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.29
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.28
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.2
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.16
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.09
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.07
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.07
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.96
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.94
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.92
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.92
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.86
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.84
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.81
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.75
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.7
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.69
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.68
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.61
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.61
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.54
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.53
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.52
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.5
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.48
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.45
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.44
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.37
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.33
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.33
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.33
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.31
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.19
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.11
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.11
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.89
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.83
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.81
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.76
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.57
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.47
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.46
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.42
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.41
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.34
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.34
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.3
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.22
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.19
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.17
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.99
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.95
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.94
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.92
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.68
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.61
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.59
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.56
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.51
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.5
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.42
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.37
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.27
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.27
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.26
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.24
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.24
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.17
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.16
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.12
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.08
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.07
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.06
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.03
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.9
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.82
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	94.81
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.67
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.6
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.48
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.48
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.42
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.42
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.4
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.32
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.03
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.02
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.72
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.67
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.4
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.37
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.29
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.08
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.82
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.77
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	92.64
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.52
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.5
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.44
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	92.41
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.4
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.22
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.2
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	91.97
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.87
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	91.8
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.77
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.77
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	91.72
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.71
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.7
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.66
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.65
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.61
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	91.61
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.59
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.55
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.47
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.42
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.12
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.03
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.94
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.64
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.6
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.36
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.3
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.27
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.25
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.25
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.16
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.93
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.83
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.32
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	89.26
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.08
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.92
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.7
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.64
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.49
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.45
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.42
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.41
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.35
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.31
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.28
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.24
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.17
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.13
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.11
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.84
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.77
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	87.71
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.63
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.23
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.05
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.74
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.14
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.05
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.6
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	85.59
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.55
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.28
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.04
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	84.84
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.6
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	84.43
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	84.34
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.01
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	83.79
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.6
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.53
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.52
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	83.38
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	83.3
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.79
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	82.65
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.45
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.29
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	82.21
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	82.07
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	81.85
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.69
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.52
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.48
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	81.46
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.13
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.02
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.79
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	80.62
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.54
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	80.39
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	80.35
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.28
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	80.14

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.7e-34  Score=259.32  Aligned_cols=219  Identities=89%  Similarity=1.363  Sum_probs=195.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+|||+||||||||++||..+++.|.+|+|||+++.+||+|.+.+|+|++.+.............+...++......+.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   81 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecH
Confidence            57999999999999999999999999999999999999999999999999988888887777777777888777777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      .....+.......+...+...+...+++++.+...+.++..............+.+|++|||||++|             
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~-------------  148 (221)
T d1dxla1          82 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV-------------  148 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE-------------
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc-------------
Confidence            8888888777777888888888889999999999999888887776666668899999999999753             


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (221)
T d1dxla1         149 --------------------------------------------------------------------------------  148 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCc
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML  361 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~  361 (477)
                                                    .|+.|+++.+.++++|++++++|+|.||+++||++|+|||+|||+++|.+
T Consensus       149 ------------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~l  198 (221)
T d1dxla1         149 ------------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPML  198 (221)
T ss_dssp             ------------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCCC
T ss_pred             ------------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCccc
Confidence                                          16678998888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCC
Q 011787          362 AHKAEEDGVACVEFLAGKHGHV  383 (477)
Q Consensus       362 ~~~A~~~g~~aa~~i~~~~~~~  383 (477)
                      ++.|..+|+.||++|+++..++
T Consensus       199 ~~~A~~~g~~aa~~i~g~~~~~  220 (221)
T d1dxla1         199 AHKAEEDGVACVEYLAGKVGHV  220 (221)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999887543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.3e-33  Score=251.28  Aligned_cols=220  Identities=47%  Similarity=0.767  Sum_probs=189.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +||++||||||||++||.++++.|++|+|||+ ..+||+|.+.+|.|++.+.......... .....+........+++.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk-~~~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQA-KHSEEMGIKAENVTIDFA   80 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHTSHHHHHHHHHHHHHHHHH-HTCGGGTEECCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-CCCCcceeccccccccccccccchhhhh-hhhhhhcccchhheeeHH
Confidence            58999999999999999999999999999999 6789999999999998887666554433 333445555556678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+.......+...+...+...+++++.+++.+.+.....+....+ ...+..+.+|||+|..|..            
T Consensus        81 ~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~-~~~~~~~~iiIa~g~~p~~------------  147 (223)
T d1ebda1          81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPIE------------  147 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEECC------------
T ss_pred             HHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceecccc-ceEEecccEEEEcCCCccc------------
Confidence            999998888888888888889999999999999999988888776543 4678999999999887631            


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (223)
T d1ebda1         148 --------------------------------------------------------------------------------  147 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                                                  .+|++||++.+.++++|++++++|+|.||+++|||+|+|||+|||++.+.++
T Consensus       148 ----------------------------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~~~  199 (223)
T d1ebda1         148 ----------------------------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALA  199 (223)
T ss_dssp             ----------------------------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCH
T ss_pred             ----------------------------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcccH
Confidence                                        1478899998888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCC
Q 011787          363 HKAEEDGVACVEFLAGKHGHVDY  385 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~~~~~~~  385 (477)
                      +.|..||+.||++|++++.+++|
T Consensus       200 ~~A~~~g~~aa~~i~g~~~~~dy  222 (223)
T d1ebda1         200 HKASYEGKVAAEAIAGHPSAVDY  222 (223)
T ss_dssp             HHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999998766665

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-33  Score=250.84  Aligned_cols=216  Identities=26%  Similarity=0.466  Sum_probs=178.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC---CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc--ccccc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG---LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK--FSSVE  118 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g---~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~--~~~~~  118 (477)
                      .+|+||||||||++||.++++.+   ++|+|+|+ ..+||+|++++|+|+|.++.....++... ....+|+.  ..+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~GciPsK~ll~~a~~~~~~~-~~~~~G~~i~~~~~~   79 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLDDCVPSKTFIASTGLRTELR-RAPHLGFHIDFDDAK   79 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHTSHHHHHHHHHHHHHHHHHT-TTTTTTBC------C
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecccccccEEEEeecchhhhhh-hhhhcCCcccccCce
Confidence            68999999999999999988764   67999998 78999999999999999988888777654 34556654  34567


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC------CEEEEEecCCceEEEEecEEEEccCCCCCCCC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP------SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP  192 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~  192 (477)
                      ++|..+..+.+.........+...+...+++++.+...+++.      +.+.+...+|...++++|.+++|||..|..+|
T Consensus        80 ~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~  159 (233)
T d1xdia1          80 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  159 (233)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             eeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCccccccc
Confidence            899999998888888777788888999999999998888765      34666677787788999999999998775432


Q ss_pred             CCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          193 GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       193 g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      .                                                                               
T Consensus       160 ~-------------------------------------------------------------------------------  160 (233)
T d1xdia1         160 S-------------------------------------------------------------------------------  160 (233)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEe
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI  352 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~  352 (477)
                                                              |..|+.+.+.++..|++++++|+|.||++|||++|+|||+
T Consensus       161 ----------------------------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~  200 (233)
T d1xdia1         161 ----------------------------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAA  200 (233)
T ss_dssp             ----------------------------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEEC
T ss_pred             ----------------------------------------cccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEE
Confidence                                                    2334444455778889999999999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          353 GDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       353 GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      |||++.+++++.|..+|++||.||+++.
T Consensus       201 GDv~~~~~l~~~A~~~g~~aa~~~~g~~  228 (233)
T d1xdia1         201 GDCTGLLPLASVAAMQGRIAMYHALGEG  228 (233)
T ss_dssp             SGGGTSCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCchhHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.5e-32  Score=242.85  Aligned_cols=214  Identities=30%  Similarity=0.475  Sum_probs=184.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +||++||||||||++||.++++.|++|+|||+ ..+||.|.+.+|+|++.++.....++..... ...........+++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~-~~~~~~~~~~~~~~~   80 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH-ADYGFPSCEGKFNWR   80 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHTT-GGGTSCCCCCCCCHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccccchhhhhhhhhhHHHHHHHHhhh-hhccccccccchhhh
Confidence            59999999999999999999999999999998 7899999999999999998888776655443 344444455678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      ......+..+..+.......++..+++++.+...+...+..++....   ..+.++.+++|||+.|..++          
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~---~~~~~~~~~iatG~~p~vp~----------  147 (221)
T d3grsa1          81 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPSTPH----------  147 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETT---EEEECSCEEECCCEEECCCC----------
T ss_pred             hhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeec---cccccceeEEecCccccCCC----------
Confidence            88888888888888888888999999999999888777766655433   68899999999999876442          


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (221)
T d3grsa1         148 --------------------------------------------------------------------------------  147 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                                                    |+.||++.|.++..|++++++|+|.||+++|||+|+|||+|||++.+.++
T Consensus       148 ------------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~l~  197 (221)
T d3grsa1         148 ------------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLT  197 (221)
T ss_dssp             ------------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSCCH
T ss_pred             ------------------------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcCcH
Confidence                                          24578888888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCC
Q 011787          363 HKAEEDGVACVEFLAGKHG  381 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~~~  381 (477)
                      +.|..+|+.||++|++...
T Consensus       198 ~~A~~~G~~aa~~~~~~~~  216 (221)
T d3grsa1         198 PVAIAAGRKLAHRLFEYKE  216 (221)
T ss_dssp             HHHHHHHHHHHHHHHSCCT
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            9999999999999997653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.1e-31  Score=239.38  Aligned_cols=218  Identities=32%  Similarity=0.538  Sum_probs=182.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK  113 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~  113 (477)
                      .+|||+||||||||++||.++++.|++|+|||+.        ..+||+|++.+|+|++.+.......+.... ...+++.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~-~~~~gi~   80 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWK   80 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-TTTTTBC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhh-hhccccc
Confidence            4699999999999999999999999999999964        357899999999999998877766655443 4667776


Q ss_pred             ccc-cccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCC
Q 011787          114 FSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP  192 (477)
Q Consensus       114 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~  192 (477)
                      ... ...++..+..+....+..+...+...+++.+|+++.+...+.+.+...+....+....+.++.+++++|++|..++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~  160 (235)
T d1h6va1          81 LEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG  160 (235)
T ss_dssp             CCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred             cccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEE
Confidence            643 5789999999999988888888888899999999999999999999999988887788999999999999986543


Q ss_pred             CCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          193 GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       193 g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      .                                                                               
T Consensus       161 i-------------------------------------------------------------------------------  161 (235)
T d1h6va1         161 I-------------------------------------------------------------------------------  161 (235)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             E-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecC-CCCeecCCCCCCCCCCeEE
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATNIPGVYA  351 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~g~i~vd~~l~t~~~~vya  351 (477)
                                                               ..+++..+.++..|+.++. .|+|.||++||||+|+|||
T Consensus       162 -----------------------------------------~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA  200 (235)
T d1h6va1         162 -----------------------------------------RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYA  200 (235)
T ss_dssp             -----------------------------------------EEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEE
T ss_pred             -----------------------------------------eeccceeeccccceeeeccccCccccCCccccCCCCEEE
Confidence                                                     0111122235566777776 5899999999999999999


Q ss_pred             ecccCC-CCCchhHHHHHHHHHHHHHcCCC
Q 011787          352 IGDVIP-GPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       352 ~GD~~~-~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      +|||+. .+.+++.|+.||+.||++|++..
T Consensus       201 ~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         201 IGDILEGKLELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             CGGGBTTSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            999985 56799999999999999999654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=234.93  Aligned_cols=229  Identities=49%  Similarity=0.869  Sum_probs=183.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccc-ccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVE  118 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~-~~~  118 (477)
                      |..+|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+................+|+... ...
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~   81 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK   81 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeecee
Confidence            4567999999999999999999999999999999999999999999999999998888888887777788888654 356


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCC
Q 011787          119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE  198 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~  198 (477)
                      ..+.............+......+.++.+++++.+++.+++++...+....+               ......      .
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~---------------~~~~~~------~  140 (233)
T d1v59a1          82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDG---------------LEGTVK------E  140 (233)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTT---------------CTTCCS------S
T ss_pred             cchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEeccc---------------ccceee------e
Confidence            7788888888888888888888888899999999999988877766654332               000000      0


Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .....          .++++                                                            
T Consensus       141 ~~~~~----------~~~i~------------------------------------------------------------  150 (233)
T d1v59a1         141 DHILD----------VKNII------------------------------------------------------------  150 (233)
T ss_dssp             CEEEE----------EEEEE------------------------------------------------------------
T ss_pred             eeecc----------CCeEE------------------------------------------------------------
Confidence            00000          00000                                                            


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                                             ....+..+.++|++|+++.+.++.+|++++++|+|.||++++|+.|+|||+||++.+
T Consensus       151 -----------------------i~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g  207 (233)
T d1v59a1         151 -----------------------VATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFG  207 (233)
T ss_dssp             -----------------------ECCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSS
T ss_pred             -----------------------EecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCccc
Confidence                                   011123345679999999888899999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCCCC
Q 011787          359 PMLAHKAEEDGVACVEFLAGKHGH  382 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~~~~  382 (477)
                      |.+++.|..+|+.||++|++...+
T Consensus       208 ~~l~~~a~~~G~~aa~~i~~~~~~  231 (233)
T d1v59a1         208 PMLAHKAEEEGIAAVEMLKTGHGH  231 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCC
Confidence            999999999999999999876544

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=2.2e-30  Score=232.05  Aligned_cols=214  Identities=41%  Similarity=0.695  Sum_probs=174.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhh--hhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSF--ASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~  119 (477)
                      .+||++||||||||++||..++++|.+|+|||+ +.+||+|++.+|+|++.++.....++...+..  ...++.......
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~-~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL   82 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEecccee
Confidence            469999999999999999999999999999998 57999999999999999988887777665432  334556666778


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCc
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK  199 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~  199 (477)
                      .+.....+....+..............+++++.++..+.+.......   +  ..+.+|++++|||++|..+|...    
T Consensus        83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~---~--~~i~a~~viiAtG~~p~~lp~~~----  153 (220)
T d1lvla1          83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD---G--QRIQCEHLLLATGSSSVELPRRP----  153 (220)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEET---T--EEEECSEEEECCCEEECCBTEEE----
T ss_pred             hHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccccccc---c--eeEeeceeeEcCCCCcccccccc----
Confidence            89999888888888888888888889999999999988887765542   2  78999999999999987655110    


Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (220)
T d1lvla1         154 --------------------------------------------------------------------------------  153 (220)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                                                           ......+...++.++ +|+|.||+++||++|+|||+|||++.|
T Consensus       154 -------------------------------------~~~~~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~~~~  195 (220)
T d1lvla1         154 -------------------------------------RTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP  195 (220)
T ss_dssp             -------------------------------------CCSSSSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGGCSS
T ss_pred             -------------------------------------cccCCcceeeehhhc-CCcccccchhhcCCCCEEEEEEeCCcc
Confidence                                                 000011222333333 478999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCCCCC
Q 011787          360 MLAHKAEEDGVACVEFLAGKHGHV  383 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~~~~~~~  383 (477)
                      .+++.|..+|++||++|+|+..++
T Consensus       196 ~l~~~a~~~g~~~a~~i~G~~~~~  219 (220)
T d1lvla1         196 MLAHRAMAQGEMVAEIIAGKARRF  219 (220)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             cchhhhhhhHHHHHHHHcCCCCCC
Confidence            999999999999999999987644

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.97  E-value=3.4e-30  Score=232.22  Aligned_cols=222  Identities=52%  Similarity=0.818  Sum_probs=187.1

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC------CCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF  114 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~------~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~  114 (477)
                      +++|||+||||||||++||.+|++.|++|+|||+..      .+||.|.+.+|.|++.+.................++..
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~   80 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIST   80 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEEC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhccccc
Confidence            357999999999999999999999999999999843      46899999999999888877777777766666778877


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCC
Q 011787          115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI  194 (477)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~  194 (477)
                      ....+++..+..+.......+...+...+...+|+++.+...+.+.....+.........+.++.+++|||++|..+|..
T Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~  160 (229)
T d3lada1          81 GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRR  160 (229)
T ss_dssp             SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEE
T ss_pred             CcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCccccccccc
Confidence            77889999999888888888888888888889999999999998888887777776678899999999999987543310


Q ss_pred             ccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          195 TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (229)
T d3lada1         161 --------------------------------------------------------------------------------  160 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787          275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD  354 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD  354 (477)
                                                               +++..+.++..|+.++++|+|.||+++||++|+|||+||
T Consensus       161 -----------------------------------------~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GD  199 (229)
T d3lada1         161 -----------------------------------------PVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGD  199 (229)
T ss_dssp             -----------------------------------------ECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGG
T ss_pred             -----------------------------------------ccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeC
Confidence                                                     000111255667888999999999999999999999999


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 011787          355 VIPGPMLAHKAEEDGVACVEFLAGKHGHV  383 (477)
Q Consensus       355 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  383 (477)
                      |+++|.+.+.|..+|+.||++|++++.++
T Consensus       200 v~~g~~l~~~A~~~G~~aa~~i~g~~~~~  228 (229)
T d3lada1         200 VVRGAMLAHKASEEGVVVAERIAGHKAQM  228 (229)
T ss_dssp             GSSSCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999887654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.96  E-value=3.5e-29  Score=227.29  Aligned_cols=219  Identities=35%  Similarity=0.518  Sum_probs=177.7

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCC--------CCceeeccCccCchhhhhhhHHHHHHHhhhhhCC
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGA--------LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG  111 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~--------~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g  111 (477)
                      +.+||++||||||||++||.++++.|. +|+|+|+...        +||+|.+.+|+|++.++......+... .+..+|
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~-~~~~~G   79 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR-ESAGFG   79 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGT
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhcccccccccccc-cccccc
Confidence            357999999999999999999999975 6999998653        799999999999999998887776554 456777


Q ss_pred             cccc--ccccChHHHHHHHHHHHHHHHHHHHHHhhhC-CeEEEEeEEEEecCCEEEEEec----CCceEEEEecEEEEcc
Q 011787          112 VKFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTI----EGGNTVVKGKNIIIAT  184 (477)
Q Consensus       112 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~----~g~~~~i~~d~lvlAt  184 (477)
                      +...  ...++|+.+..+.+..+..+...++..+.+. +++++.+...+.+.........    .+..+.+.+|.+++||
T Consensus        80 i~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~  159 (240)
T d1feca1          80 WELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLAT  159 (240)
T ss_dssp             EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred             ccccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEec
Confidence            7643  4568999999999988888877777666544 6999999998888777655432    3345679999999999


Q ss_pred             CCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHH
Q 011787          185 GSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRS  264 (477)
Q Consensus       185 G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      |++|.....                                             .                         
T Consensus       160 G~~p~~~~~---------------------------------------------~-------------------------  169 (240)
T d1feca1         160 GSWPQHLGI---------------------------------------------E-------------------------  169 (240)
T ss_dssp             CEEECCCCS---------------------------------------------B-------------------------
T ss_pred             CCceeEccc---------------------------------------------c-------------------------
Confidence            998743110                                             0                         


Q ss_pred             HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCC
Q 011787          265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT  344 (477)
Q Consensus       265 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t  344 (477)
                                                                        .|+...+.++.+|++++++|+|.||+++||
T Consensus       170 --------------------------------------------------~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T  199 (240)
T d1feca1         170 --------------------------------------------------VPRSQTLQLEKAGVEVAKNGAIKVDAYSKT  199 (240)
T ss_dssp             --------------------------------------------------EESCTTSCGGGGTCCBCTTSCBCCCTTCBC
T ss_pred             --------------------------------------------------ccccCCCCccccCeEECCCCcEEcCcccCc
Confidence                                                              023333447788999999999999999999


Q ss_pred             CCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       345 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      |+|+|||+|||++.+.+++.|..||+.||+++++..
T Consensus       200 s~~~iyA~GDv~~~~~~~~~A~~eg~~aa~~~~~~~  235 (240)
T d1feca1         200 NVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK  235 (240)
T ss_dssp             SSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCEEEEEECCCCccchhhHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.96  E-value=3.5e-28  Score=218.84  Aligned_cols=223  Identities=41%  Similarity=0.657  Sum_probs=167.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .+|||+||||||||++||.+|++.|++|+|||+.+.+||+|.+.+|+|++.+........... ....+|.......+.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~-~~~~~G~~~~~~~~~~   83 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR-HLAANGIKYPEPELDI   83 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTCCCCCCCCCH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhh-hHhhcCCcccCCcccH
Confidence            369999999999999999999999999999999999999999999999998877766655443 3466777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceE
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI  201 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~  201 (477)
                      ..+..+++.....+............++++.+...+.++.........                                
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~--------------------------------  131 (229)
T d1ojta1          84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTA--------------------------------  131 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEE--------------------------------
T ss_pred             HHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccc--------------------------------
Confidence            888888887777777777777777888887776554433222111000                                


Q ss_pred             ecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                                                                                                     .
T Consensus       132 -------------------------------------------------------------------------------~  132 (229)
T d1ojta1         132 -------------------------------------------------------------------------------G  132 (229)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEE-EEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVV-LVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~v-i~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                       ..........      ......++.+ +.+.++.|+...+.++..|++++++|+|.||+++|||+|+|||+|||++.|.
T Consensus       133 -~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~  205 (229)
T d1ojta1         133 -DAYEQAAPTG------EKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM  205 (229)
T ss_dssp             -EETTEEEEEE------EEEEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC
T ss_pred             -cccccccccc------cccceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc
Confidence             0000000000      1122333333 4444456776666689999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCCCCC
Q 011787          361 LAHKAEEDGVACVEFLAGKHGHV  383 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~~~~~  383 (477)
                      +++.|..||++||++|+|+...+
T Consensus       206 l~~~A~~eG~~Aa~~i~G~~~~~  228 (229)
T d1ojta1         206 LAHKAVHEGHVAAENCAGHKAYF  228 (229)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999876543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.96  E-value=1e-28  Score=226.81  Aligned_cols=216  Identities=23%  Similarity=0.327  Sum_probs=157.7

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcc-ccccc
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK-FSSVE  118 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~-~~~~~  118 (477)
                      .+.+||+|||||||+|+.+|..+++.|.+|++||+.+.+||+|.+.+|+|++.+.................+.. .....
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~  118 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKV  118 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCC
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhcccccccccc
Confidence            34579999999999999999999999999999999999999999999999999888877766554433223322 23345


Q ss_pred             cChHHHHHHHHHHHHHHHHHH-HHHhhhC-CeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCcc
Q 011787          119 VDLPAMMAQKDKAVSNLTRGI-EGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI  196 (477)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~  196 (477)
                      .++.................. ....... ...++.+.+.+++.+.+.+   ++  +.+.+|++++|||++|..++....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~---~g--~~i~ad~viiAtG~~P~~~~i~~~  193 (261)
T d1mo9a1         119 VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA---AG--KVFKAKNLILAVGAGPGTLDVPEQ  193 (261)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE---TT--EEEEBSCEEECCCEECCCCCSTCE
T ss_pred             ccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccc---cc--ceEeeeeeeeccCCCCCcCccccc
Confidence            666666655444443332221 1222333 4455667777777776654   34  678899999999988864331100


Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      .                           ...+++                                              
T Consensus       194 ~---------------------------~~~~l~----------------------------------------------  200 (261)
T d1mo9a1         194 P---------------------------RSAELA----------------------------------------------  200 (261)
T ss_dssp             E---------------------------CCHHHH----------------------------------------------
T ss_pred             c---------------------------cccccc----------------------------------------------
Confidence            0                           001111                                              


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                                                                     +..|++++++|+|.||++|||++|+|||+|||+
T Consensus       201 -----------------------------------------------~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~  233 (261)
T d1mo9a1         201 -----------------------------------------------KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLI  233 (261)
T ss_dssp             -----------------------------------------------HHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGG
T ss_pred             -----------------------------------------------cceeeeeccCCEEEeCCCcccCCCCEEEEEEeC
Confidence                                                           223577888999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHcCCC
Q 011787          357 PGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       357 ~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      ++|.+++.|..||++||+||+|+.
T Consensus       234 ~~~~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         234 GGPMEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             CSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcccHHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999875

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.95  E-value=6.4e-27  Score=211.91  Aligned_cols=217  Identities=32%  Similarity=0.520  Sum_probs=165.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC--------CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV  112 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~--------~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~  112 (477)
                      .+||++||||||||++||.++++.|. +|+|+|+.        +.+||+|.+.+|+|++.++..+..++.... ...+|.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~-~~~~G~   80 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRE-SAGFGW   80 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHH-HHhcCC
Confidence            57999999999999999999999875 68899874        368999999999999999888877665543 455665


Q ss_pred             cc--cccccChHHHHHHHHHHHHHHHHHHHHHh-hhCCeEEEEeEEEEecCCEEEEEecC----CceEEEEecEEEEccC
Q 011787          113 KF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKGYGKFISPSEVSVDTIE----GGNTVVKGKNIIIATG  185 (477)
Q Consensus       113 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~v~~~~----g~~~~i~~d~lvlAtG  185 (477)
                      ..  .....+|..+..+.+..+..........+ ...+++++.+...+............    .....+.++.+++++|
T Consensus        81 ~~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~  160 (238)
T d1aoga1          81 EFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASG  160 (238)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCC
T ss_pred             cccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeecc
Confidence            44  34567899999998888887777776666 47789999998877766655444221    1223455555555555


Q ss_pred             CCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHH
Q 011787          186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL  265 (477)
Q Consensus       186 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l  265 (477)
                      ..|..                                                                           
T Consensus       161 ~~~~~---------------------------------------------------------------------------  165 (238)
T d1aoga1         161 SWPHM---------------------------------------------------------------------------  165 (238)
T ss_dssp             EEECC---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            44321                                                                           


Q ss_pred             HhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCC
Q 011787          266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATN  345 (477)
Q Consensus       266 ~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~  345 (477)
                                                                   ..|..|++..+.++..++.++ +|+|.||+++||+
T Consensus       166 ---------------------------------------------~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~  199 (238)
T d1aoga1         166 ---------------------------------------------PNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTN  199 (238)
T ss_dssp             ---------------------------------------------CCCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCS
T ss_pred             ---------------------------------------------ccccccceeeecccccEEEEc-CCeEEecCCeeec
Confidence                                                         123344444444566677776 6899999999999


Q ss_pred             CCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          346 IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       346 ~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      +|+|||+|||.+.+.+.+.|..||+.||++|++..
T Consensus       200 ~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~  234 (238)
T d1aoga1         200 VSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT  234 (238)
T ss_dssp             STTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSS
T ss_pred             cCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999865

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.9e-27  Score=211.07  Aligned_cols=210  Identities=30%  Similarity=0.518  Sum_probs=179.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      +|||+||||||||++||.+|++.|.+|+|||+ +.+||+|.+.+|+|++.+...+..++........+++......+++.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   80 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE   80 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence            59999999999999999999999999999999 57999999999999999999888888777666777887777789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCCCCccCCceEe
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV  202 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~  202 (477)
                      .+..+.+..+..+...+...+.+.+|++..+............   ++  ..+.++++++|||+.|..            
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~---~~--~~~~~~~~iiatG~~p~i------------  143 (217)
T d1gesa1          81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPSH------------  143 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEECC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecC---CC--ceeeeeeeeeecCccccC------------
Confidence            9999999988888888888899999999888766665555433   33  789999999999986631            


Q ss_pred             cchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       203 ~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (217)
T d1gesa1         144 --------------------------------------------------------------------------------  143 (217)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCch
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA  362 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~  362 (477)
                                                    +..|+.+.+.++..++.++++|++.+|+.++|+.|+||++||+..++.++
T Consensus       144 ------------------------------p~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela  193 (217)
T d1gesa1         144 ------------------------------PREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELT  193 (217)
T ss_dssp             ------------------------------CEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCH
T ss_pred             ------------------------------CCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHH
Confidence                                          12244444446666788888999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCC
Q 011787          363 HKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       363 ~~A~~~g~~aa~~i~~~~  380 (477)
                      +.+..+|+.++.++++..
T Consensus       194 ~~~~~~G~~v~~~~~~~~  211 (217)
T d1gesa1         194 PVAVAAGRRLSERLFNNK  211 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            999999999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.94  E-value=1.1e-29  Score=233.09  Aligned_cols=179  Identities=26%  Similarity=0.501  Sum_probs=141.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      ||++||||||||++||.++++.|++|+|||+ ..+||+|++.+|+|+|.++.....+.... ....+|+... ..++|..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc~n~gciPsK~l~~~~~~~~~~~-~~~~~G~~~~-~~~~~~~   78 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVNVGCVPKKIMFNAASVHDILE-NSRHYGFDTK-FSFNLPL   78 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHHHHTSHHHHHHHHHHHHHHHHHH-HGGGGTCCCC-CCCCHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeEEeeCCcchHHHHhhhhcccchh-ccccccccch-hhhhhhh
Confidence            8999999999999999999999999999998 57999999999999999998887776554 3567787643 6789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCC---------ceEEEEecEEEEccCCCC----CC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG---------GNTVVKGKNIIIATGSDV----KS  190 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g---------~~~~i~~d~lvlAtG~~~----~~  190 (477)
                      +..+....+..+...+...+++.+++++.|.+.+++.+.+.+...++         ..+.+++|++|||||++|    +.
T Consensus        79 ~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~  158 (259)
T d1onfa1          79 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPD  158 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCT
T ss_pred             HHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccc
Confidence            99999999999988888999999999999999998888777653221         235799999999999999    36


Q ss_pred             CCCCccCCceEecchhhhcccCCCCeeEEEcccHHH
Q 011787          191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG  226 (477)
Q Consensus       191 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g  226 (477)
                      +|+++.+...+++++.+..++..+++ .|+|+|.+|
T Consensus       159 ~~~~~l~~~~i~ts~~~~~~d~~~~t-~Vig~gaiG  193 (259)
T d1onfa1         159 TENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVG  193 (259)
T ss_dssp             TTTSSCTTTTCCBSSSCEEECTTCBC-SSSSEEECS
T ss_pred             ccccccccceeeecccccccccCCce-eEeeEEEEE
Confidence            77777777788899888888776654 677777665

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.87  E-value=1.9e-21  Score=170.19  Aligned_cols=163  Identities=23%  Similarity=0.269  Sum_probs=125.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCCCCCHH--------------HHHHHHHHHHhcCcEEEeCceEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVPSMDGE--------------IRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~~~~~~--------------~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      +|+|||||++|+|+|..|++.+  .+|+++++.+.+ +..+..              +.....+.++++||+++++++|+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-SFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-SBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-cccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            6999999999999999999885  478999987654 122211              22223467888999999999999


Q ss_pred             EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-----ccccceeecCCCCeecCCCCCCCCCCeEEecc
Q 011787          280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-----LDKIGVETDKMGRIPVNERFATNIPGVYAIGD  354 (477)
Q Consensus       280 ~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~-----~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD  354 (477)
                      +++.+++.+.+.  +..+++...+++|.+++++|..|+.....     .-..++.++++|+|.||+++||+.|+|||+||
T Consensus        81 ~i~~~~~~v~~~--~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD  158 (198)
T d1nhpa1          81 AIQPKEHQVTVK--DLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGD  158 (198)
T ss_dssp             EEETTTTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred             eEeeccccceee--ecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecc
Confidence            998777765544  34556677899999999999876532100     11225777889999999999999999999999


Q ss_pred             cCCC----------CCchhHHHHHHHHHHHHHcCCCC
Q 011787          355 VIPG----------PMLAHKAEEDGVACVEFLAGKHG  381 (477)
Q Consensus       355 ~~~~----------~~~~~~A~~~g~~aa~~i~~~~~  381 (477)
                      |+..          ..++..|.+||+.||+||.+...
T Consensus       159 ~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~  195 (198)
T d1nhpa1         159 ATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK  195 (198)
T ss_dssp             GSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred             eeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence            9843          23688899999999999987654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.85  E-value=2.9e-22  Score=173.15  Aligned_cols=156  Identities=20%  Similarity=0.275  Sum_probs=118.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC-HHHHHHHH----------HHHHhcCcEEEeCceEEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQ----------RSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-~~~~~~~~----------~~l~~~gv~~~~~~~v~~i~  282 (477)
                      ..+|+|||||++|+|+|..|++.|.+++++.+.++.++.++ +.+...+.          ..+...+++++++.+++++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   82 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   82 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence            35699999999999999999999998888877766654332 22222111          23345689999999999997


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCc---cccceeecCCCCeecCCCCCCCCCCeEEecccCCCC
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL---DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~---~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~  359 (477)
                      .+...+  .+.     +++++++|.+++|+|..|+...+..   ...++..  +++|.||+++||+.|+|||+|||+..+
T Consensus        83 ~~~~~~--~~~-----~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~ts~~~IyA~GD~a~~~  153 (183)
T d1d7ya1          83 PQAHTV--ALS-----DGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRTTCPDVYALGDVTRQR  153 (183)
T ss_dssp             TTTTEE--EET-----TSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBCSSTTEEECGGGEEEE
T ss_pred             ccccee--Eec-----CCcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceeccccccchhhhhhccc
Confidence            655443  333     6789999999999999998764322   2334543  357999999999999999999998422


Q ss_pred             ----------CchhHHHHHHHHHHHHHcC
Q 011787          360 ----------MLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       360 ----------~~~~~A~~~g~~aa~~i~~  378 (477)
                                .++..|..||+.||+||+.
T Consensus       154 ~~~~g~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         154 NPLSGRFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             CTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             eeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence                      3688999999999999974

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.84  E-value=1.1e-20  Score=150.69  Aligned_cols=122  Identities=86%  Similarity=1.256  Sum_probs=112.9

Q ss_pred             CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787          191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       191 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                      +||++.++..++++++++.+++.|++++|||||++|+|+|..++++|.+||+++++++++|.+|+++.+.+.+.|+++||
T Consensus         2 iPgi~~d~~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI   81 (123)
T d1dxla2           2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM   81 (123)
T ss_dssp             BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred             CCCCcCCCCeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccc
Confidence            57777778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 011787          271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                      ++++++++++++..++++.+++...++++.+.++||.|++|.
T Consensus        82 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          82 KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             eEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            999999999999888888888776666677889999999873

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.84  E-value=3.4e-20  Score=146.86  Aligned_cols=116  Identities=42%  Similarity=0.687  Sum_probs=107.5

Q ss_pred             cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      .++..++++++++.+++.|++++|||||++|+|+|..|+++|++||++++.++++|.+|+++.+.+++.++++||+++++
T Consensus         4 ~d~~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~   83 (119)
T d3lada2           4 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG   83 (119)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred             CCCCEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +++++++.+++++.+++.+  .++++++.||.|++|+|
T Consensus        84 ~~v~~i~~~~~~v~v~~~~--~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          84 ARVTGTEVKNKQVTVKFVD--AEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CEEEEEEECSSCEEEEEES--SSEEEEEEESEEEECSC
T ss_pred             cEEEEEEEeCCEEEEEEEE--CCCCEEEECCEEEEeeC
Confidence            9999999998888888763  23457899999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.8e-20  Score=146.58  Aligned_cols=120  Identities=53%  Similarity=0.816  Sum_probs=107.9

Q ss_pred             CCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcE
Q 011787          192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK  271 (477)
Q Consensus       192 ~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~  271 (477)
                      ||++.++.+++++++++.+.+.|++++|||+|++|+|+|..|+++|.+||+++++++++|.+|+++.+.+++.++++||+
T Consensus         1 Pgi~~d~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~   80 (122)
T d1v59a2           1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD   80 (122)
T ss_dssp             TTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCccCCCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccce
Confidence            55666678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEe
Q 011787          272 FMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       272 ~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                      +++++++++++..+++.  .+++.+..++..+++++|.|++|
T Consensus        81 i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          81 FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            99999999998876543  45555556667788999999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.83  E-value=3.9e-20  Score=147.30  Aligned_cols=123  Identities=45%  Similarity=0.657  Sum_probs=110.1

Q ss_pred             CCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                      .+|+.+. ..+++++++++.+.+.|++++|||||++|+|+|..++++|.+||++++.++++|.+|+++.+.+++.++++|
T Consensus         3 ~lP~ip~-~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~g   81 (125)
T d1ojta2           3 KLPFIPE-DPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF   81 (125)
T ss_dssp             CCSSCCC-CTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCC-CCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcC
Confidence            3555543 456899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      |++++++.+++++.+++++.+++.. .++..+++++|.|++|+|+
T Consensus        82 v~~~~~~~v~~v~~~~~g~~v~~~~-~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          82 DNIMVNTKTVAVEPKEDGVYVTFEG-ANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEECSCEEEEEEEETTEEEEEEES-SSCCSSCEEESCEEECCCE
T ss_pred             cccccCcEEEEEEEcCCcEEEEEEe-CCCCeEEEEcCEEEEecCC
Confidence            9999999999999998888887763 2334468999999999996

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.83  E-value=3.2e-20  Score=157.65  Aligned_cols=149  Identities=23%  Similarity=0.288  Sum_probs=115.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHH-------------HHHHHHHHhcCcEEEeCceEEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR-------------KQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~-------------~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      +|+|||||++|+|+|..|++ +.+||++++.+.+. ..++.+.             ....+.+++.++++++++.++.++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   79 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY-YSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID   79 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC-CCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc-ccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence            79999999999999999965 67999998876432 1111111             222456778899999999999986


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC----
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG----  358 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~----  358 (477)
                      ... .+ +. .     ++.++++|.+++|+|..|+. +  ++..|++.+.  .+.||+++||+.|+|||+|||+..    
T Consensus        80 ~~~-~~-~~-~-----~~~~i~~D~li~a~G~~~~~-~--~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~  146 (167)
T d1xhca1          80 RGR-KV-VI-T-----EKGEVPYDTLVLATGAPNVD-L--ARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGII  146 (167)
T ss_dssp             TTT-TE-EE-E-----SSCEEECSEEEECCCEECCH-H--HHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBC
T ss_pred             ccc-cc-cc-c-----cccccccceeEEEEEecCCc-h--hhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeE
Confidence            433 22 22 2     45689999999999997753 2  5667787654  599999999999999999999854    


Q ss_pred             CCchhHHHHHHHHHHHHHcCC
Q 011787          359 PMLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       359 ~~~~~~A~~~g~~aa~~i~~~  379 (477)
                      +..++.|+.||+.+|+||+|+
T Consensus       147 ~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTC
T ss_pred             EChHHHHHHHHHHHHHHcCCC
Confidence            346789999999999999874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=7.3e-21  Score=164.54  Aligned_cols=157  Identities=20%  Similarity=0.260  Sum_probs=117.8

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCC--------------HHHHHHHHHHHHhcCcEEEeCceE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMD--------------GEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~--------------~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .++|+|||||++|+|+|..|+++|.+++++.+.+.... ...              ..............+..+..+..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   82 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence            57899999999999999999999999988877765421 111              111112234456677888888888


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-ccccceeecCCCCeecCCCCCCCCCCeEEecccCC
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-LDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP  357 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~-~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~  357 (477)
                      ..++.+...+  ...     ++.++++|.+++++|.+|+.+.+. ++..++..  +|++.||+++||+.|+|||+|||+.
T Consensus        83 ~~~~~~~~~v--~~~-----~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~~  153 (185)
T d1q1ra1          83 TAINRDRQQV--ILS-----DGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCAR  153 (185)
T ss_dssp             EEEETTTTEE--EET-----TSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGEE
T ss_pred             eeecccccEE--Eee-----ceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhhc
Confidence            8875544333  332     667999999999999988665432 24445544  4689999999999999999999985


Q ss_pred             CC----------CchhHHHHHHHHHHHHHcCC
Q 011787          358 GP----------MLAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       358 ~~----------~~~~~A~~~g~~aa~~i~~~  379 (477)
                      .+          .+++.|.+||+.||+||+|+
T Consensus       154 ~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         154 FHSQLYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             EEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             cccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            32          37899999999999999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=3.6e-19  Score=140.83  Aligned_cols=111  Identities=41%  Similarity=0.712  Sum_probs=102.2

Q ss_pred             ceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceE
Q 011787          199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  278 (477)
                      .+++++++++.+.+.|++++|||||++|+|+|..|+++|.+||++++.+++++.+|+++.+.+.+.|+++||++++++++
T Consensus         7 ~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v   86 (117)
T d1ebda2           7 NRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA   86 (117)
T ss_dssp             SSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred             CCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 011787          279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS  311 (477)
Q Consensus       279 ~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a  311 (477)
                      ++++..++++.+.+..  +++.+++++|.|+++
T Consensus        87 ~~i~~~~~~~~v~~~~--~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          87 KGAEEREDGVTVTYEA--NGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEEEETTEEEEEEEE--TTEEEEEEESEEEEC
T ss_pred             EEEEEcCCEEEEEEEe--CCCEEEEEeEEEEEC
Confidence            9999888888777652  345578999999974

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.1e-21  Score=167.97  Aligned_cols=157  Identities=20%  Similarity=0.263  Sum_probs=120.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCCCC-----------------------------------HH-
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSMD-----------------------------------GE-  256 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~~-----------------------------------~~-  256 (477)
                      .+++|||||++|+++|..|++.+.  +|+++.+.+.+ |+.-                                   ++ 
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            468999999999999999998875  58998765432 1110                                   00 


Q ss_pred             -HHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeec-CCC
Q 011787          257 -IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMG  334 (477)
Q Consensus       257 -~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~g  334 (477)
                       ........+++.||+++++++|++|+.+++.+  ++.     +++++++|.+|+|+|..|+...+ .+..|+.++ ..|
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V--~l~-----dG~~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~~  155 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMV--KLN-----DGSQITYEKCLIATGGTEPNVEL-AKTGGLEIDSDFG  155 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEE--EET-----TSCEEEEEEEEECCCEEEECCTT-HHHHTCCBCTTTC
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeeccCcee--eec-----cceeeccceEEEeeeeecchhhh-hhccchhhhhhhh
Confidence             01111234567899999999999998776654  443     67899999999999987766544 566778774 458


Q ss_pred             CeecCCCCCCCCCCeEEecccCCC---------CCchhHHHHHHHHHHHHHcCCCC
Q 011787          335 RIPVNERFATNIPGVYAIGDVIPG---------PMLAHKAEEDGVACVEFLAGKHG  381 (477)
Q Consensus       335 ~i~vd~~l~t~~~~vya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~  381 (477)
                      .|.||++|||+ |+|||+|||+..         +.++..|..||+.||+||+|...
T Consensus       156 ~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~  210 (213)
T d1m6ia1         156 GFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK  210 (213)
T ss_dssp             SEECCTTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             hhhhhHhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence            99999999998 999999999842         34788999999999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.8e-19  Score=142.00  Aligned_cols=114  Identities=27%  Similarity=0.474  Sum_probs=103.3

Q ss_pred             CCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCc
Q 011787          191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM  270 (477)
Q Consensus       191 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv  270 (477)
                      +||.+    ..+++++++.+++.|++++|||+|++|+|+|..|+++|.+||++++.++++|.+|+++.+.+++.++++||
T Consensus         2 iPG~e----~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV   77 (116)
T d1gesa2           2 IPGVE----YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP   77 (116)
T ss_dssp             STTGG----GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred             cCCcc----ccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCC
Confidence            56643    45789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          271 KFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      ++++++.++++..+++ .+.++++     +++++++|.|++|+|
T Consensus        78 ~~~~~~~v~~i~~~~~~~~~v~~~-----~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          78 QLHTNAIPKAVVKNTDGSLTLELE-----DGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEECSCCEEEEEECTTSCEEEEET-----TSCEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEEcCCcEEEEEEC-----CCCEEEcCEEEEecC
Confidence            9999999999987654 4667665     667999999999998

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.80  E-value=1.3e-19  Score=143.51  Aligned_cols=89  Identities=88%  Similarity=1.259  Sum_probs=85.1

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH  464 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~  464 (477)
                      |+.+|+++|++|+++++|+||++|++.|+++++..+++....++...++++||+|+++|+++++|||+|++|++|+|+||
T Consensus         1 Y~~iP~~vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~elI~   80 (123)
T d1dxla3           1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIH   80 (123)
T ss_dssp             TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred             CCCCCEEeecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHHHH
Confidence            57799999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 011787          465 EAAMATHDK  473 (477)
Q Consensus       465 ~~~~~~~~~  473 (477)
                      .+++||.++
T Consensus        81 ~~~~ai~~~   89 (123)
T d1dxla3          81 EAAIALQYD   89 (123)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999864

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.4e-19  Score=143.29  Aligned_cols=89  Identities=60%  Similarity=1.008  Sum_probs=85.3

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH  464 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~  464 (477)
                      |+.+|+++|++|++++||+||+||++.++++++..+++....++...++++||+|+++|++|++|||++++|++|+|+||
T Consensus         1 Y~~iP~~vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~elI~   80 (123)
T d1v59a3           1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIA   80 (123)
T ss_dssp             TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred             CCCCCEEeecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHHHH
Confidence            67899999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 011787          465 EAAMATHDK  473 (477)
Q Consensus       465 ~~~~~~~~~  473 (477)
                      .+++||.++
T Consensus        81 ~~alai~~~   89 (123)
T d1v59a3          81 EAGLALEYG   89 (123)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-18  Score=138.70  Aligned_cols=120  Identities=27%  Similarity=0.471  Sum_probs=105.2

Q ss_pred             CCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcC
Q 011787          190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK  269 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~g  269 (477)
                      .+||.+    ..+++++++.+++.|++++|||||++|+|+|..|+++|.+||+++++++++|.+|+++.+.+.+.++++|
T Consensus         2 ~IPG~e----~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~G   77 (125)
T d3grsa2           2 QIPGAS----LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAG   77 (125)
T ss_dssp             TSTTGG----GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCCCcc----ccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCC
Confidence            356643    3588999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeCceEEEEEEcCCeEEEEEeecCCC----ceEEEEcCEEEEeec
Q 011787          270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGG----EKTILEADVVLVSAG  313 (477)
Q Consensus       270 v~~~~~~~v~~i~~~~~~~~v~~~~~~~~----~~~~i~~D~vi~a~G  313 (477)
                      |++++++++++++.+++++.+.+.....+    ....+++|.|++|+|
T Consensus        78 v~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          78 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            99999999999999888877665433322    234678999999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.79  E-value=1.5e-21  Score=175.36  Aligned_cols=191  Identities=14%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             hhhhcccCCCcceeccccccCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhh
Q 011787           14 LSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL   93 (477)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l   93 (477)
                      +..|..|+..+++......+++. ++.....+|+||||||||++||..|++.|++|+|+|+++.+||+|.....+|....
T Consensus        21 ~~~c~~n~~~~~e~~~~~~p~~~-~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~   99 (233)
T d1djqa3          21 PMICTQNATAGEEYRRGWHPEKF-RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE   99 (233)
T ss_dssp             CCCCSSCTTTTTHHHHCCCSSCC-CCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGG
T ss_pred             eeeeecCcccChHHhcCCCCCcc-CcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeec
Confidence            45689999999988877766553 44567789999999999999999999999999999999999998876655543221


Q ss_pred             hhhhHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceE
Q 011787           94 LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNT  173 (477)
Q Consensus        94 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~  173 (477)
                      +....                           .+.       ...+.... ...+....      +.....+...+.  .
T Consensus       100 ~~~~~---------------------------~~~-------~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~--~  136 (233)
T d1djqa3         100 WSYHR---------------------------DYR-------ETQITKLL-KKNKESQL------ALGQKPMTADDV--L  136 (233)
T ss_dssp             GGHHH---------------------------HHH-------HHHHHHHH-TTCTTCEE------ECSCCCCCHHHH--H
T ss_pred             ccccc---------------------------hhH-------HHHHHHHh-hcceeeee------ecccccccchhh--h
Confidence            11100                           000       00011111 11111100      001111111111  3


Q ss_pred             EEEecEEEEccCCCCCCCC--CCccCCceEecc---hhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          174 VVKGKNIIIATGSDVKSLP--GITIDEKRIVSS---TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       174 ~i~~d~lvlAtG~~~~~~~--g~~~~~~~~~~~---~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      ++.||++|+|||+.+..++  +.+  .......   .+.......+++++|+|+|++|+|+|..|++.|.+|+++++++.
T Consensus       137 ~~~~d~vviAtG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         137 QYGADKVIIATGASECTLWNELKA--RESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             TSCCSEEEECCCEECCHHHHHHHH--TTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             hhccceeeeccCCCcccccccccc--cccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence            4689999999999874321  111  1111111   11112223478999999999999999999999999999999987


Q ss_pred             cC
Q 011787          249 IV  250 (477)
Q Consensus       249 ~~  250 (477)
                      ++
T Consensus       215 ~~  216 (233)
T d1djqa3         215 IA  216 (233)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.79  E-value=2.3e-19  Score=140.28  Aligned_cols=87  Identities=41%  Similarity=0.733  Sum_probs=83.1

Q ss_pred             CCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHHH
Q 011787          387 KVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEA  466 (477)
Q Consensus       387 ~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~~  466 (477)
                      .+|+++|++|++++||+||+||++.|+++++..++++...++...++++||+|+++|+++++|||++++|++|+|+||.+
T Consensus         1 AvP~~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~   80 (115)
T d1ebda3           1 AIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAEL   80 (115)
T ss_dssp             CCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHH
T ss_pred             CcCeEecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 011787          467 AMATHDK  473 (477)
Q Consensus       467 ~~~~~~~  473 (477)
                      ++||.++
T Consensus        81 ~~ai~~~   87 (115)
T d1ebda3          81 GLAIEAG   87 (115)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcC
Confidence            9999854

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=1.9e-19  Score=141.26  Aligned_cols=87  Identities=33%  Similarity=0.495  Sum_probs=83.1

Q ss_pred             CCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHH
Q 011787          386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHE  465 (477)
Q Consensus       386 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~  465 (477)
                      ..+|+++|++|+++++|+||++|++.|++|.+..++++...++...+++.||+|+++|++|++|||+|++|++|+|+||.
T Consensus         2 r~iP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~   81 (118)
T d1xdia2           2 RTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILP   81 (118)
T ss_dssp             GGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHH
T ss_pred             CCCCEEecCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHHH
Confidence            35899999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 011787          466 AAMATHD  472 (477)
Q Consensus       466 ~~~~~~~  472 (477)
                      +++||..
T Consensus        82 ~~~ai~~   88 (118)
T d1xdia2          82 IAVAVQN   88 (118)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999974

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=2.3e-19  Score=142.38  Aligned_cols=88  Identities=50%  Similarity=0.888  Sum_probs=84.2

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH  464 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~  464 (477)
                      |..+|+++|++|++++||+||++|++.++++++..+++....++...+++.||+|+++|++|++|||++++|++|+|+||
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~elI~   80 (124)
T d3lada3           1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQ   80 (124)
T ss_dssp             TTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred             CCcCCeEecCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHHHH
Confidence            57899999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 011787          465 EAAMATHD  472 (477)
Q Consensus       465 ~~~~~~~~  472 (477)
                      .+++||.+
T Consensus        81 ~~~~ai~~   88 (124)
T d3lada3          81 QGAIAMEF   88 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.78  E-value=1e-18  Score=138.14  Aligned_cols=110  Identities=26%  Similarity=0.475  Sum_probs=98.8

Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHc---CCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~---g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      ...++++++.+++.|++++|||||++|+|+|..+.++   |.+|+++++.++++|.+|+++.+.+++.++++||++++++
T Consensus         4 ~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~   83 (117)
T d1feca2           4 LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHE   83 (117)
T ss_dssp             GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETC
T ss_pred             EEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCC
Confidence            4678999999999999999999999999999887665   7899999999999999999999999999999999999999


Q ss_pred             eEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          277 KVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       277 ~v~~i~~~~~~-~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      .+++++..+++ ..+.++     ++++++||.|++|+|+
T Consensus        84 ~v~~i~~~~~g~~~v~~~-----~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          84 NPAKVTKNADGTRHVVFE-----SGAEADYDVVMLAIGR  117 (117)
T ss_dssp             CEEEEEECTTSCEEEEET-----TSCEEEESEEEECSCE
T ss_pred             EEEEEEECCCCEEEEEEC-----CCCEEEcCEEEEecCC
Confidence            99999876544 456655     6779999999999996

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.7e-19  Score=137.58  Aligned_cols=89  Identities=21%  Similarity=0.416  Sum_probs=83.0

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHc--CCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL  462 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~  462 (477)
                      |..+|+++|++|++++||+||+||++.  +.++++..+++....++...++++||+|+++|+++++|||++++|++|+||
T Consensus         1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~El   80 (115)
T d3grsa3           1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEM   80 (115)
T ss_dssp             CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred             CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHHHH
Confidence            567999999999999999999999776  567999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC
Q 011787          463 IHEAAMATHDK  473 (477)
Q Consensus       463 ~~~~~~~~~~~  473 (477)
                      ||.+++||.++
T Consensus        81 I~~~~~ai~~~   91 (115)
T d3grsa3          81 LQGFAVAVKMG   91 (115)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999864

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.77  E-value=7.3e-19  Score=139.89  Aligned_cols=88  Identities=36%  Similarity=0.545  Sum_probs=83.9

Q ss_pred             CCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHH
Q 011787          386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHE  465 (477)
Q Consensus       386 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~  465 (477)
                      ..+|+++|++|++++||+|+++|++.++++.+..+++....++...+++.||+|+++|++||+|||+|++|++|+|+||.
T Consensus         2 r~IP~~vft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~   81 (128)
T d1ojta3           2 RVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGE   81 (128)
T ss_dssp             CCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHH
T ss_pred             CcCCEeecCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHHH
Confidence            35899999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 011787          466 AAMATHDK  473 (477)
Q Consensus       466 ~~~~~~~~  473 (477)
                      +++||.++
T Consensus        82 ~~lai~~~   89 (128)
T d1ojta3          82 VCLAIEMG   89 (128)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99999854

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=4.6e-19  Score=140.15  Aligned_cols=87  Identities=33%  Similarity=0.551  Sum_probs=83.3

Q ss_pred             CCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHHHHH
Q 011787          386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHE  465 (477)
Q Consensus       386 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~~~  465 (477)
                      ..+|+++|++|++++||+||+||++.|+++++..+++....++...+++.||+|+++|++|++|||++++|++|+|+||.
T Consensus         2 ~~iP~vvft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~~   81 (123)
T d1lvla3           2 AAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTA   81 (123)
T ss_dssp             SCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHH
T ss_pred             CCCCEEEeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 011787          466 AAMATHD  472 (477)
Q Consensus       466 ~~~~~~~  472 (477)
                      +++||.+
T Consensus        82 ~~lai~~   88 (123)
T d1lvla3          82 FAQSLEM   88 (123)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999874

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=2.5e-18  Score=135.14  Aligned_cols=114  Identities=22%  Similarity=0.401  Sum_probs=99.3

Q ss_pred             CCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787          189 KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       189 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~  268 (477)
                      |++||.+    .+++++++..++. |++++|||||++|+|+|..|++.|.+||++++.+++++.+|+++++.+++.|+++
T Consensus         2 P~IpG~e----~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~   76 (117)
T d1onfa2           2 PPVKGIE----NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKN   76 (117)
T ss_dssp             CSCTTGG----GCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT
T ss_pred             cccCCHh----HcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhC
Confidence            3567653    4688999988877 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEeCceEEEEEEcC-CeEEEEEeecCCCceEEE-EcCEEEEee
Q 011787          269 KMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTIL-EADVVLVSA  312 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~~i-~~D~vi~a~  312 (477)
                      ||++++++.+++++..+ +.+.+++.     +++.+ .+|.|++|+
T Consensus        77 gV~i~~~~~v~~i~~~~~~~~~v~~~-----~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKKVSDKNLSIHLS-----DGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEESSTTCEEEEET-----TSCEEEEESEEEECC
T ss_pred             CCEEEECCEEEEEEEcCCCeEEEEEC-----CCCEEEeCCEEEEeC
Confidence            99999999999998664 45667665     45555 579999985

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=5.8e-18  Score=134.22  Aligned_cols=113  Identities=24%  Similarity=0.370  Sum_probs=98.9

Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEE
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV  279 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  279 (477)
                      ..+++++++.+.+.|++++|||||++|+|+|..|+++|.+||++.+ +++++.+|+++.+.+.+.|+++||+++++++++
T Consensus         6 ~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~-~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~   84 (122)
T d1h6va2           6 YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDMANKIGEHMEEHGIKFIRQFVPT   84 (122)
T ss_dssp             HCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEE
T ss_pred             eeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEe-chhhccCCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence            4578999999999999999999999999999999999999999986 478999999999999999999999999999999


Q ss_pred             EEEEcC----CeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          280 GVDLSG----DGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       280 ~i~~~~----~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +++..+    ..+.+++....+++...+++|.|++|+|
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          85 KIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            997542    3456666655555556788999999998

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.2e-18  Score=136.03  Aligned_cols=89  Identities=28%  Similarity=0.411  Sum_probs=82.2

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHc--CCCEEEEEEecCccccchhcCCCceEEEEEEECCCCeEEEEEEEcCChHHH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL  462 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~  462 (477)
                      |+.+|+++|++|++++||+||+||++.  +.++++..+++....++...++++|++|+++|+++++|||++++|++|+||
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~El   80 (115)
T d1gesa3           1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEM   80 (115)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred             CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHHHH
Confidence            568999999999999999999999987  456888888999988998888899999999999999999999999999999


Q ss_pred             HHHHHHHhcCC
Q 011787          463 IHEAAMATHDK  473 (477)
Q Consensus       463 ~~~~~~~~~~~  473 (477)
                      ||.+++||.++
T Consensus        81 I~~~~~ai~~~   91 (115)
T d1gesa3          81 LQGFAVALKMG   91 (115)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=4.5e-18  Score=133.85  Aligned_cols=111  Identities=39%  Similarity=0.595  Sum_probs=97.9

Q ss_pred             CceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      +.++++++++..+...|++++|||||++|+|+|..|+++|++||++++.++++|.+|+++.+.+++.|+++||+++++++
T Consensus         5 g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~   84 (115)
T d1lvla2           5 GGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHS   84 (115)
T ss_dssp             BTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCE
T ss_pred             CCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcE
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      |++++  ++......   ..++++++++|.|++|+|
T Consensus        85 V~~i~--~~~~~~~~---~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          85 VEGYE--NGCLLAND---GKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEEE--TTEEEEEC---SSSCCCEECCSCEEECCC
T ss_pred             EEEEc--CCeEEEEE---cCCCeEEEEcCEEEEecC
Confidence            99984  33332222   234557899999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.75  E-value=1e-17  Score=132.05  Aligned_cols=108  Identities=21%  Similarity=0.439  Sum_probs=96.9

Q ss_pred             eEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      .++++++++.+.+.|++++|||||++|+|+|..+..++   .+||++++.++++|.+|+++.+.+++.|+++||++++++
T Consensus         6 ~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~   85 (117)
T d1aoga2           6 HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE   85 (117)
T ss_dssp             GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred             ceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence            47899999999999999999999999999998888765   469999999999999999999999999999999999999


Q ss_pred             eEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEee
Q 011787          277 KVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       277 ~v~~i~~~~-~~~~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                      ++++++..+ +.+.++++     ++++++||.|++|+
T Consensus        86 ~v~~ie~~~~~~~~v~~~-----~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          86 NPAKVELNADGSKSVTFE-----SGKKMDFDLVMMAI  117 (117)
T ss_dssp             CEEEEEECTTSCEEEEET-----TSCEEEESEEEECS
T ss_pred             EEEEEEEcCCCeEEEEEC-----CCcEEEeCEEEEeC
Confidence            999998654 45667765     66789999999984

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.1e-19  Score=153.60  Aligned_cols=155  Identities=21%  Similarity=0.279  Sum_probs=105.4

Q ss_pred             hhhhhcccCCCcceeccccccCCCCCCCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchh
Q 011787           13 VLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA   92 (477)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~   92 (477)
                      .+..|..|+..+++.+++.      .+....++|+|||||||||+||..|+++|++|+|+|+.+.+||+......+|.+.
T Consensus        19 ~~~~C~~Np~~g~e~~~~~------~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~   92 (179)
T d1ps9a3          19 KVTSCLVNPRACHETKMPI------LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE   92 (179)
T ss_dssp             CCCCCSSCTTTTCTTTSCC------CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCT
T ss_pred             CeeEEeeCccccCcccccc------CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccc
Confidence            4778999999998876653      3344568999999999999999999999999999999999999754322232211


Q ss_pred             hhhhhHHHHHHHhhhhhCCccccccccChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCce
Q 011787           93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGN  172 (477)
Q Consensus        93 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~  172 (477)
                                                 .+           ..+.+++...+++.++++..++..         . .+   
T Consensus        93 ---------------------------~~-----------~~~~~~~~~~~~~~gV~i~l~~~V---------t-~~---  121 (179)
T d1ps9a3          93 ---------------------------EF-----------YETLRYYRRMIEVTGVTLKLNHTV---------T-AD---  121 (179)
T ss_dssp             ---------------------------TH-----------HHHHHHHHHHHHHHTCEEEESCCC---------C-SS---
T ss_pred             ---------------------------hH-----------HHHHHHHHHhhhcCCeEEEeCCEE---------c-cc---
Confidence                                       11           112233445556678888766421         1 11   


Q ss_pred             EEEEecEEEEccCCCCCCCCCCccCCceEecchhhhcccCCCCeeEEEcccHHHHHH-HHHHHHcCCc
Q 011787          173 TVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEM-GSVWARLGSE  239 (477)
Q Consensus       173 ~~i~~d~lvlAtG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~-a~~l~~~g~~  239 (477)
                      ....||++|+|||+.|+.++..               ....+++++|+|+|.+++++ +....+.|.+
T Consensus       122 ~~~~~d~vilAtG~~~~~~~~p---------------g~~~g~~v~vigggd~a~~~~~~~Av~~G~~  174 (179)
T d1ps9a3         122 QLQAFDETILASGIPNRALAQP---------------LIDSGKTVHLIGGCDVAMELDARRAIAQGTR  174 (179)
T ss_dssp             SSCCSSEEEECCCEECCTTHHH---------------HHTTTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred             ccccceeEEEeecCCCcccccc---------------hhccCCEEEEECCcHhhhhccchhhhhccCE
Confidence            2357899999999977543211               11247899999999988876 3333344433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.72  E-value=1.4e-17  Score=131.65  Aligned_cols=116  Identities=22%  Similarity=0.367  Sum_probs=93.5

Q ss_pred             CCCCCCccCCceEecchhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHH
Q 011787          189 KSLPGITIDEKRIVSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRS  264 (477)
Q Consensus       189 ~~~~g~~~~~~~~~~~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~  264 (477)
                      |++||.+.+-..+.+.+|+..++   ..+++++|||||++|+|+|..|+++|.+||++++.+++++ .+|+++.+.+++.
T Consensus         2 P~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~   81 (121)
T d1d7ya2           2 PTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARY   81 (121)
T ss_dssp             GGGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH
T ss_pred             ccCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHH
Confidence            34667553212223445555443   3479999999999999999999999999999999999987 7899999999999


Q ss_pred             HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       265 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      ++++||++++++.++++.  ++.  +++.     ++++++||.|++|+|
T Consensus        82 l~~~GV~i~~~~~v~~~~--~~~--v~l~-----dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          82 HAAQGVDLRFERSVTGSV--DGV--VLLD-----DGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHTTTCEEEESCCEEEEE--TTE--EEET-----TSCEEECSEEEECSC
T ss_pred             HHHCCcEEEeCCEEEEEe--CCE--EEEC-----CCCEEECCEEEEeeC
Confidence            999999999999999884  333  3443     678999999999998

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.71  E-value=2.3e-17  Score=131.11  Aligned_cols=89  Identities=20%  Similarity=0.264  Sum_probs=79.7

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchhcC-CCceEEEEEEECCCCeEEEEEEEcCChHHHH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAID-DAEGIVKILAEKETDKILGVHIMAPNAGELI  463 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~i~G~~~~g~~~~~~~  463 (477)
                      |..+|+++|++|++++||+||+||+..+.++++...++....++.... ...+++|+++|++|++|||++++|++|+|||
T Consensus         1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~ElI   80 (128)
T d1feca3           1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII   80 (128)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred             CCCCCEEecCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHHH
Confidence            567999999999999999999999999999999998887777766544 4457899999999999999999999999999


Q ss_pred             HHHHHHhcCC
Q 011787          464 HEAAMATHDK  473 (477)
Q Consensus       464 ~~~~~~~~~~  473 (477)
                      +.+++||.++
T Consensus        81 ~~~~~ai~~~   90 (128)
T d1feca3          81 QSVAICLKMG   90 (128)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999999854

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.71  E-value=9.8e-17  Score=127.61  Aligned_cols=116  Identities=16%  Similarity=0.267  Sum_probs=96.3

Q ss_pred             CceEecchhhhc-ccC-CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          198 EKRIVSSTGALA-LNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       198 ~~~~~~~~~~~~-~~~-~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      ...+++...+.+ +.. .+++++|||||++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+++.++++||+++++
T Consensus         4 ~~gv~~~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~   83 (121)
T d1mo9a2           4 AKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISG   83 (121)
T ss_dssp             SBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESS
T ss_pred             CCCEEeHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcC
Confidence            455666665543 222 369999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       276 ~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +.+++++.++++....+.....++++++++|.|++|+|
T Consensus        84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          84 SNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             CEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            99999998765443332222345678899999999998

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.71  E-value=2.1e-17  Score=134.15  Aligned_cols=88  Identities=25%  Similarity=0.319  Sum_probs=76.9

Q ss_pred             CCCceEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccc----------------cchhcCCCceEEEEEEECCCCeE
Q 011787          386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANS----------------RAKAIDDAEGIVKILAEKETDKI  449 (477)
Q Consensus       386 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~k~~~~~~~~~i  449 (477)
                      ..+|+++|++|++++||+||+||++.|+++++..+++....                ++...+++.|++|+++|++|++|
T Consensus         2 ~~iP~vvfT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~I   81 (140)
T d1mo9a3           2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKV   81 (140)
T ss_dssp             CSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBE
T ss_pred             CCCCcEeccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCcE
Confidence            45799999999999999999999999999999998754321                12345677899999999999999


Q ss_pred             EEEEEEcCChHHHHHHHHHHhcCC
Q 011787          450 LGVHIMAPNAGELIHEAAMATHDK  473 (477)
Q Consensus       450 ~G~~~~g~~~~~~~~~~~~~~~~~  473 (477)
                      ||++++|++|+||||.+++||.++
T Consensus        82 lGa~ivG~~A~ElI~~~~~ai~~~  105 (140)
T d1mo9a3          82 LGAHHVGYGAKDAFQYLNVLIKQG  105 (140)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999854

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=1.5e-16  Score=137.64  Aligned_cols=154  Identities=25%  Similarity=0.273  Sum_probs=122.2

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC----------------C-----CCCHHHHHHHHHHHHhcCcEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV----------------P-----SMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~----------------~-----~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      .++|+|||||++|+++|..+++.|.++.++++.....                +     ...+++...+.+.+++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            5789999999999999999999999999998654321                1     113567777777788889998


Q ss_pred             EeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC-----CCCCCCCCccccceeecCCCCeecCC-CCCCCC
Q 011787          273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-----TPFTAGLGLDKIGVETDKMGRIPVNE-RFATNI  346 (477)
Q Consensus       273 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~-----~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~  346 (477)
                      ... .|.+++..++...+..      +.....+|.+++++|.     .|++.+   ...+++++++|+|.+|+ .++|+.
T Consensus        85 ~~~-~V~~~~~~~~~~~v~~------~~~~~~~~~~~~a~g~~~~g~~p~~~~---~~~~veld~~G~i~~~~~~~~Ts~  154 (192)
T d1vdca1          85 FTE-TVTKVDFSSKPFKLFT------DSKAILADAVILAIGAVAKGHEPATKF---LDGGVELDSDGYVVTKPGTTQTSV  154 (192)
T ss_dssp             ECC-CCCEEECSSSSEEEEC------SSEEEEEEEEEECCCEEECCEEESCGG---GTTSSCBCTTSCBCCCTTSCBCSS
T ss_pred             eee-eEEecccccCcEEecc------cceeeeeeeEEEEeeeeecccCchHHH---hcCceeecCCCeEEeCCCceEecC
Confidence            755 6888876666655553      4568889999999984     477664   23468999999999996 689999


Q ss_pred             CCeEEecccCCCCC-chhHHHHHHHHHHHHHc
Q 011787          347 PGVYAIGDVIPGPM-LAHKAEEDGVACVEFLA  377 (477)
Q Consensus       347 ~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~  377 (477)
                      |+|||+|||.+.+. ....|..+|..||..+.
T Consensus       155 ~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~~  186 (192)
T d1vdca1         155 PGVFAAGDVQDKKYRQAITAAGTGCMAALDAE  186 (192)
T ss_dssp             TTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeeecCCcccceEEEEEechHHHHHHHH
Confidence            99999999997764 78889999999998764

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=6.1e-17  Score=127.31  Aligned_cols=89  Identities=21%  Similarity=0.377  Sum_probs=72.7

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCc----cccchhcCCCceEEEEEEECCCCeEEEEEEEcCC
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLA----NSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN  458 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~k~~~~~~~~~i~G~~~~g~~  458 (477)
                      |+.+|+++|++|++++||+||+||++.+.+  +.+....+..    ..+....++.+|++|+++|+++++|||++++|++
T Consensus         1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~   80 (119)
T d1onfa3           1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLN   80 (119)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred             CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCC
Confidence            568999999999999999999999988754  3333333332    2344445567799999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCC
Q 011787          459 AGELIHEAAMATHDK  473 (477)
Q Consensus       459 ~~~~~~~~~~~~~~~  473 (477)
                      |+||||.+++||.++
T Consensus        81 A~ElI~~~~~ai~~~   95 (119)
T d1onfa3          81 ADEIVQGFAVALKMN   95 (119)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.64  E-value=6.8e-16  Score=132.47  Aligned_cols=156  Identities=20%  Similarity=0.229  Sum_probs=108.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC--cEEEEEeCCCcCCCCCHHHH----------HHHHHHHHhcCcEEEeCceEEEE
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSMDGEIR----------KQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~--~Vtli~~~~~~~~~~~~~~~----------~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      +|+|+|||||++|+|+|..|++.+.  +||++++.+.++........          ......+...++.+..+ .+..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECC-CEEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeee-eeEee
Confidence            6899999999999999999999874  78999988876443221111          11123445567777654 34444


Q ss_pred             EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCcccc------ceeecCCCCeecCCC-CC-CCCCCeEEec
Q 011787          282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI------GVETDKMGRIPVNER-FA-TNIPGVYAIG  353 (477)
Q Consensus       282 ~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~------gl~~~~~g~i~vd~~-l~-t~~~~vya~G  353 (477)
                      +...  ..+.+.     +++++++|.+++|+|.+|+...+.....      ++..+ .+++.++.. ++ ++.++||++|
T Consensus        81 ~~~~--~~~~~~-----~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~iG  152 (186)
T d1fcda1          81 DPDK--KLVKTA-----GGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIHVIG  152 (186)
T ss_dssp             CTTT--TEEEET-----TSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEEECT
T ss_pred             eecc--ceeecc-----cceeeccceEEEEeccccchhhhhhhhhhheeccCcccc-cccccceeeeeecccccCceEec
Confidence            2222  223332     6689999999999999999876532211      22233 345555554 43 8899999999


Q ss_pred             ccCCC---CCchhHHHHHHHHHHHHHcC
Q 011787          354 DVIPG---PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       354 D~~~~---~~~~~~A~~~g~~aa~~i~~  378 (477)
                      |++..   |..+..|..||+.+|+||..
T Consensus       153 d~~~~~~~p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         153 DASIANPMPKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             TSEECTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCchHhHHHHHHHHHHHHHHH
Confidence            99844   56789999999999999963

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.63  E-value=1.2e-15  Score=121.02  Aligned_cols=94  Identities=27%  Similarity=0.465  Sum_probs=83.4

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT  291 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~  291 (477)
                      .+++++|||||++|+|+|..|++.|.+||++++.+++++ .+|+++.+.+++.++++||++++++.+++++.++ .+...
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v  107 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKV  107 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS-BCCEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-CEEEE
Confidence            478999999999999999999999999999999999987 6899999999999999999999999999998654 44333


Q ss_pred             EeecCCCceEEEEcCEEEEee
Q 011787          292 LEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       292 ~~~~~~~~~~~i~~D~vi~a~  312 (477)
                      +.     ++++++||.|++|+
T Consensus       108 ~~-----dg~~i~~D~vi~aI  123 (123)
T d1nhpa2         108 VT-----DKNAYDADLVVVAV  123 (123)
T ss_dssp             EE-----SSCEEECSEEEECS
T ss_pred             Ee-----CCCEEECCEEEEEC
Confidence            43     56789999999974

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.7e-15  Score=130.69  Aligned_cols=156  Identities=19%  Similarity=0.239  Sum_probs=116.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-----------C-----CCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----------P-----SMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-----------~-----~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      .++|+|||||++|++.|..+++.|.+|+++++.+...           +     ....++.+.....+.+.++++.. ..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   83 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF-DH   83 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC-CC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec-ce
Confidence            4689999999999999999999999999998765311           1     11345667777788888998875 46


Q ss_pred             EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC--ccccceeecCCCCeecCC-----CCCCCCCCeE
Q 011787          278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETDKMGRIPVNE-----RFATNIPGVY  350 (477)
Q Consensus       278 v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~--~~~~gl~~~~~g~i~vd~-----~l~t~~~~vy  350 (477)
                      |+++...++...++.      ....+.++.+++++|..|......  +-...++++ +|+|.+|+     .++|++|+||
T Consensus        84 V~~~~~~~~~~~v~~------~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~gV~  156 (190)
T d1trba1          84 INKVDLQNRPFRLNG------DNGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVF  156 (190)
T ss_dssp             EEEEECSSSSEEEEE------SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEE
T ss_pred             eEEEecCCCcEEEEE------eeeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccCeEE
Confidence            888887776666654      346899999999999776432100  111124444 48899985     4579999999


Q ss_pred             EecccCCCC-CchhHHHHHHHHHHHHHc
Q 011787          351 AIGDVIPGP-MLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       351 a~GD~~~~~-~~~~~A~~~g~~aa~~i~  377 (477)
                      |+|||++.+ ..+..|+.+|..||.++.
T Consensus       157 aaGDv~~~~~~q~i~Aag~G~~AA~~a~  184 (190)
T d1trba1         157 AAGDVMDHIYRQAITSAGTGCMAALDAE  184 (190)
T ss_dssp             ECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             EeEEecCcceeEEEEEeccHHHHHHHHH
Confidence            999999754 578889999999997653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-15  Score=123.87  Aligned_cols=107  Identities=19%  Similarity=0.288  Sum_probs=93.8

Q ss_pred             cchhhhcccC---CCCeeEEEcccHHHHHHHHHHH----HcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEe
Q 011787          203 SSTGALALNE---VPKKLVVIGAGYIGLEMGSVWA----RLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       203 ~~~~~~~~~~---~~~~v~IiG~G~~g~e~a~~l~----~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      +.+|+..+.+   .+++++|||||++|+|+|..|+    ..|.+|+++++.+++++ .+|+++.+.+.+.++++||++++
T Consensus        23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~  102 (137)
T d1m6ia2          23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  102 (137)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence            5555554433   3889999999999999999985    46899999999999987 58999999999999999999999


Q ss_pred             CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 011787          275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       275 ~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ++.|++++.+++++.+++.     +++++++|.|++|+|.
T Consensus       103 ~~~V~~i~~~~~~~~v~l~-----~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         103 NAIVQSVGVSSGKLLIKLK-----DGRKVETDHIVAAVGL  137 (137)
T ss_dssp             SCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCE
T ss_pred             CCEEEEEEecCCEEEEEEC-----CCCEEECCEEEEeecC
Confidence            9999999998888888876     6789999999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.62  E-value=7e-16  Score=122.35  Aligned_cols=91  Identities=26%  Similarity=0.502  Sum_probs=81.1

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL  292 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~  292 (477)
                      .+++++|||||++|+|+|..|+++|.+||++++.+.+++ +|+++.+.+.+.|+++||++++++++++++.  +++   +
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~v---~  104 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE--EGV---L  104 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--SEE---E
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CEE---E
Confidence            368999999999999999999999999999999998876 8999999999999999999999999999843  332   2


Q ss_pred             eecCCCceEEEEcCEEEEeecC
Q 011787          293 EPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       293 ~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      .     +++.+++|.|++|+|.
T Consensus       105 ~-----~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         105 T-----NSGFIEGKVKICAIGI  121 (122)
T ss_dssp             E-----TTEEEECSCEEEECCE
T ss_pred             e-----CCCEEECCEEEEEEEe
Confidence            2     5678999999999995

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=1.9e-15  Score=121.57  Aligned_cols=107  Identities=27%  Similarity=0.405  Sum_probs=90.1

Q ss_pred             ecchhhhccc---CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-CCCHHHHHHHHHHHHhcCcEEEeCce
Q 011787          202 VSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTK  277 (477)
Q Consensus       202 ~~~~~~~~~~---~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gv~~~~~~~  277 (477)
                      .+.+|...++   ..+++++|||||++|+|+|..|++.|.+||++++.+++++ .+++++.+.+++.++++||++++++.
T Consensus        20 r~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~   99 (133)
T d1q1ra2          20 RTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQ   99 (133)
T ss_dssp             SSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             CCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCe
Confidence            3444544432   3489999999999999999999999999999999999987 57999999999999999999999999


Q ss_pred             EEEEEEcCC--eEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          278 VVGVDLSGD--GVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       278 v~~i~~~~~--~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      +++++...+  .+. +.+.     +++++++|.||+|+|
T Consensus       100 v~~i~~~~~~~~v~~v~~~-----~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         100 VCGFEMSTDQQKVTAVLCE-----DGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEEEEECTTTCCEEEEEET-----TSCEEECSEEEECCC
T ss_pred             EEEEEEeCCCceEEEEECC-----CCCEEECCEEEEeeC
Confidence            999987543  333 4443     667899999999998

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.59  E-value=7.5e-16  Score=128.34  Aligned_cols=145  Identities=14%  Similarity=0.069  Sum_probs=113.4

Q ss_pred             EccCCCCC---CCCCCccCCceEecchhhhcccCCCCeeEEE---cccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCH
Q 011787          182 IATGSDVK---SLPGITIDEKRIVSSTGALALNEVPKKLVVI---GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDG  255 (477)
Q Consensus       182 lAtG~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~v~Ii---G~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~  255 (477)
                      -|||+.|.   ++||.+.+..+++++++++..+..+++.+||   |||++|+|+|..|+++|++||++++.+.+++.+++
T Consensus         3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~   82 (156)
T d1djqa2           3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFT   82 (156)
T ss_dssp             CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHT
T ss_pred             cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccch
Confidence            38998873   5788887777899999999888776655555   99999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCC
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR  335 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~  335 (477)
                      .....+.+.|+++||++++++.+.+++  ++.+.+...       ....++.+...+|..|+...  .+..+++.|.  .
T Consensus        83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~--~~~v~l~~~-------~~~~~~~v~~~~g~~~~~~~--~~~~~le~D~--v  149 (156)
T d1djqa2          83 LEYPNMMRRLHELHVEELGDHFCSRIE--PGRMEIYNI-------WGDGSKRTYRGPGVSPRDAN--TSHRWIEFDS--L  149 (156)
T ss_dssp             TCHHHHHHHHHHTTCEEEETEEEEEEE--TTEEEEEET-------TCSCSCCCCCCTTSCSSCCC--CCCEEEECSE--E
T ss_pred             hHHHHHHHHHhhccceEEeccEEEEec--CcceEEEee-------eccccceeeeeeEEEecccC--CccCcEecce--E
Confidence            888899999999999999999999995  344444421       22345677777888888775  4555565542  4


Q ss_pred             eecC
Q 011787          336 IPVN  339 (477)
Q Consensus       336 i~vd  339 (477)
                      +.++
T Consensus       150 ilvt  153 (156)
T d1djqa2         150 VLVT  153 (156)
T ss_dssp             EEES
T ss_pred             EEEe
Confidence            4444

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=6.2e-15  Score=117.80  Aligned_cols=89  Identities=29%  Similarity=0.412  Sum_probs=67.3

Q ss_pred             CCCCceEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCccccchh-cCCCceEEEEEEE-CCCCeEEEEEEEcCChH
Q 011787          385 YDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKA-IDDAEGIVKILAE-KETDKILGVHIMAPNAG  460 (477)
Q Consensus       385 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~-~~~~~i~G~~~~g~~~~  460 (477)
                      |+.+|+++|++|++++||+||+||++.+.+  +.+....+....+... ..+..++.+++++ +++++|||+|++|++|+
T Consensus         1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~   80 (133)
T d1h6va3           1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAG   80 (133)
T ss_dssp             CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHH
T ss_pred             CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHH
Confidence            678999999999999999999999987654  3333333333223222 2344566666665 57899999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 011787          461 ELIHEAAMATHDK  473 (477)
Q Consensus       461 ~~~~~~~~~~~~~  473 (477)
                      ||||.+++||.++
T Consensus        81 ElI~~~~~ai~~~   93 (133)
T d1h6va3          81 EVTQGFAAALKCG   93 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=4.1e-14  Score=127.79  Aligned_cols=120  Identities=18%  Similarity=0.287  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCCCCC-------Cccc
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-------GLDK  325 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~--~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l-------~~~~  325 (477)
                      .++.+.+.+.+++.||+++++++|++++..++..  ...+..    ++.++.||.||+|+|-.+....-       .+++
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~----~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~  184 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV----NSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQ  184 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE----TTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec----CCEEEEeCEEEEcCCcccccccCCCchHHHHHHh
Confidence            4567778888899999999999999998765532  222221    56789999999999966433210       0122


Q ss_pred             cceeec-----CCCCee---cCC-CCCC-CCCCeEEecccCCC-----CCchhHHHHHHHHHHHHHcC
Q 011787          326 IGVETD-----KMGRIP---VNE-RFAT-NIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       326 ~gl~~~-----~~g~i~---vd~-~l~t-~~~~vya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~  378 (477)
                      .++.+-     ..|++.   +|. .|++ .+|++|.+|.+...     -..-++|...|..|++.|..
T Consensus       185 ~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         185 FGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             TTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence            232221     113343   443 3653 68999999976621     12456788999999998864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=9.3e-14  Score=125.26  Aligned_cols=117  Identities=18%  Similarity=0.229  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCC--C-----Cccccc
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAG--L-----GLDKIG  327 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~--l-----~~~~~g  327 (477)
                      ++.+.+.+.+++.|++++++++|+++..+++.+. +.++     +++.+.+|.||+|+|-......  -     .+++.+
T Consensus       111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~-----~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~  185 (251)
T d2i0za1         111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ-----TGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAG  185 (251)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC-----CCCeEecCeEEEccCCccccccCCCcccchhcccce
Confidence            4456677788889999999999999998887765 4443     5678999999999996543321  0     023333


Q ss_pred             eeecCC--CCeec-----CCCCCCCCCCeEEecccCCCC-----CchhHHHHHHHHHHHHHc
Q 011787          328 VETDKM--GRIPV-----NERFATNIPGVYAIGDVIPGP-----MLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       328 l~~~~~--g~i~v-----d~~l~t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~~i~  377 (477)
                      ..+.+.  +.+.+     +....+..|++|++|++....     .....|...|+.|+..+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~  247 (251)
T d2i0za1         186 HTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG  247 (251)
T ss_dssp             CCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHH
Confidence            333210  11111     122236789999999987211     134678889999988764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.1e-14  Score=119.69  Aligned_cols=155  Identities=17%  Similarity=0.225  Sum_probs=117.9

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC--c--------CCC----CCHHHHHHHHHHHHhcCcEEEeCceEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD--I--------VPS----MDGEIRKQFQRSLEKQKMKFMLKTKVVGV  281 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~--~--------~~~----~~~~~~~~~~~~l~~~gv~~~~~~~v~~i  281 (477)
                      .|+|||||++|+++|..+++.|.+|++++++..  +        .+.    ..+.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            589999999999999999999999999986421  1        011    12566667777788888998888888777


Q ss_pred             EEcCCeE---EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC
Q 011787          282 DLSGDGV---KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG  358 (477)
Q Consensus       282 ~~~~~~~---~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~  358 (477)
                      .......   ....     .+...+.++.++.++|..++...  ....++.....|.|.+|..++|+.|+||++|||.+.
T Consensus        83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~  155 (184)
T d1fl2a1          83 IPAAVEGGLHQIET-----ASGAVLKARSIIVATGAKLPNTN--WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTV  155 (184)
T ss_dssp             ECCSSTTCCEEEEE-----TTSCEEEEEEEEECCCEEEESCG--GGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSC
T ss_pred             cccccccceeeeee-----ecceeeecccccccccccccccc--cccccccccccceeccCCceeeeCCCEEEEeeecCc
Confidence            6543221   2222     14568999999999998776654  344567777789999999999999999999999976


Q ss_pred             C-CchhHHHHHHHHHHHHHc
Q 011787          359 P-MLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       359 ~-~~~~~A~~~g~~aa~~i~  377 (477)
                      + .....|..+|..||..+.
T Consensus       156 ~~~~~vva~g~G~~aA~~~~  175 (184)
T d1fl2a1         156 PYKQIIIATGEGAKASLSAF  175 (184)
T ss_dssp             SSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECcHHHHHHHH
Confidence            6 457788888888877664

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.51  E-value=1.5e-14  Score=114.80  Aligned_cols=79  Identities=23%  Similarity=0.221  Sum_probs=67.7

Q ss_pred             EcCCCeeeecCCHHHHHHcCCCEEEEEEecCccccchh-cCCCceEEEEEEECCCCeEEEEEEEcCC-hHHHHHHHHHHh
Q 011787          393 YTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA-IDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAAMAT  470 (477)
Q Consensus       393 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~~~~i~G~~~~g~~-~~~~~~~~~~~~  470 (477)
                      .++|+++++|+||+||++.|+++.+..++...  ++.. .+.+++|+|+++|++|++|||+|++|++ +.|+|+.+++||
T Consensus        10 vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~--~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai   87 (126)
T d1nhpa3          10 VFDYKFASTGINEVMAQKLGKETKAVTVVEDY--LMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAI   87 (126)
T ss_dssp             ETTEEEEEEECCHHHHHHHTCCCEEEEEEEES--SCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHH
T ss_pred             EcCccEEEecccHHHHHHCCCCEEEEEEecCc--chhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHH
Confidence            34999999999999999999999998876543  3333 3556899999999999999999999965 999999999999


Q ss_pred             cCC
Q 011787          471 HDK  473 (477)
Q Consensus       471 ~~~  473 (477)
                      .++
T Consensus        88 ~~~   90 (126)
T d1nhpa3          88 QAK   90 (126)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            854

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.47  E-value=5.7e-12  Score=118.46  Aligned_cols=122  Identities=13%  Similarity=0.104  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCC-----C-------
Q 011787          256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-----G-------  322 (477)
Q Consensus       256 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l-----~-------  322 (477)
                      .+...+.+..++.|++++.++++.++..+++++. +.+.+..+++...+.++.||+|||--......     .       
T Consensus       159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            4555667777888999999999999888877765 55556667777789999999999843221100     0       


Q ss_pred             -ccccc-eeecCCCCeecCCCCCCCCCCeEEecccCCC-----CC----chhHHHHHHHHHHHHHc
Q 011787          323 -LDKIG-VETDKMGRIPVNERFATNIPGVYAIGDVIPG-----PM----LAHKAEEDGVACVEFLA  377 (477)
Q Consensus       323 -~~~~g-l~~~~~g~i~vd~~l~t~~~~vya~GD~~~~-----~~----~~~~A~~~g~~aa~~i~  377 (477)
                       ....| ..+.+.++|.+|+..+|+.|++|++||+...     ..    +...+...+..+++.+.
T Consensus       239 ~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         239 IALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHH
Confidence             01223 2345667899999999999999999998631     22    23344445555665554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.46  E-value=9.1e-14  Score=130.12  Aligned_cols=109  Identities=16%  Similarity=0.201  Sum_probs=69.9

Q ss_pred             CcEEEeCceEEEEEEcCCe------EEEEEeecCCCceEEEEcCEEEEeecCCCCCC--------CCCcccc-cee-ecC
Q 011787          269 KMKFMLKTKVVGVDLSGDG------VKLTLEPAAGGEKTILEADVVLVSAGRTPFTA--------GLGLDKI-GVE-TDK  332 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~------~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~--------~l~~~~~-gl~-~~~  332 (477)
                      +.+++++++|++|..++++      ..+.......++++.+++|.||+|++..+...        .+..... .+. .+.
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            6778899999999876543      22333333445677899999999986322110        0000000 000 001


Q ss_pred             CCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcC
Q 011787          333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       333 ~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~  378 (477)
                      ++.+.+++.++|+.|+||++||+.+++ ....|+.+|+.||+.|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-hHHHHHHHHHHHHHHHHH
Confidence            122334556788999999999999766 467899999999999864

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.42  E-value=5.7e-13  Score=124.70  Aligned_cols=40  Identities=40%  Similarity=0.606  Sum_probs=37.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      .+||+|||+|+||++||++|++.|++|+||||.+..||..
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            5899999999999999999999999999999988888754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.39  E-value=3.2e-13  Score=127.61  Aligned_cols=115  Identities=12%  Similarity=0.135  Sum_probs=72.5

Q ss_pred             HHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC-----CCCcccc-ceeecCCCC
Q 011787          262 QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA-----GLGLDKI-GVETDKMGR  335 (477)
Q Consensus       262 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~-----~l~~~~~-gl~~~~~g~  335 (477)
                      ...+++.|++++++++|++|+.+++++.+.+.. .++++++++||.||+|++......     .+..... .+......+
T Consensus       242 ~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~-~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~  320 (370)
T d2iida1         242 TAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYET-LSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY  320 (370)
T ss_dssp             HHHHHHTGGGEESSCEEEEEEECSSCEEEEEEC-SSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred             HHHHHhcCCccccCceEEEEEEeCCeEEEEEEe-cCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcc
Confidence            344567799999999999999999988877653 345667899999999986321100     0000000 000000001


Q ss_pred             --eecCCCCCCCCCCeEEecccCCCCC-chhHHHHHHHHHHHHHc
Q 011787          336 --IPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLA  377 (477)
Q Consensus       336 --i~vd~~l~t~~~~vya~GD~~~~~~-~~~~A~~~g~~aa~~i~  377 (477)
                        ...++.+.+...+||++||++..+. ....|+..|..||.+|.
T Consensus       321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHH
Confidence              1111223344567999999886665 45779999999999874

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.36  E-value=1.3e-13  Score=128.42  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=70.9

Q ss_pred             HHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccce-------eec
Q 011787          259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV-------ETD  331 (477)
Q Consensus       259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl-------~~~  331 (477)
                      ..+.+..++.|++++++++|++|+.+++++.+++.+  +++.++++||.||+|++.......  +.....       ...
T Consensus       223 ~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~--~~~~~~~~ad~VV~a~p~~~~~~L--l~~~~~~~~~~~~~~~  298 (347)
T d2ivda1         223 VLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEE--HGRRAELSVAQVVLAAPAHATAKL--LRPLDDALAALVAGIY  298 (347)
T ss_dssp             HHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEE--TTEEEEEECSEEEECSCHHHHHHH--HTTTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEc--CCeEEEEECCEEEECCCHHHHHHh--ccCCCHHHHHHhhcce
Confidence            334444555689999999999999888887776653  345578999999999984321111  010000       000


Q ss_pred             CCCCe---ecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHc
Q 011787          332 KMGRI---PVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       332 ~~g~i---~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  377 (477)
                      ..|..   ...+...++.|++|++||...+.. ...|..+|+.+|+.|.
T Consensus       299 ~~~~~~~~~~~~~~~~~~p~~~~~G~~~~g~~-~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         299 NLGHLERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCIRNAAQLADALV  346 (347)
T ss_dssp             BTTHHHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHHHHHHHHHHHHC
T ss_pred             ecCcccceecccccccCCCCEEEecccccCCC-HHHHHHHHHHHHHHhh
Confidence            11111   111122367899999999876654 4568899999998875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.31  E-value=7.7e-12  Score=116.07  Aligned_cols=41  Identities=46%  Similarity=0.712  Sum_probs=37.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ..+||+|||||+||++||++|++.|++|+||||.+..||..
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            35899999999999999999999999999999988887753

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.1e-11  Score=112.92  Aligned_cols=95  Identities=19%  Similarity=0.271  Sum_probs=69.4

Q ss_pred             HHHHHhcCcEEEeCceEEEEEEcCC-------eEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-----------
Q 011787          262 QRSLEKQKMKFMLKTKVVGVDLSGD-------GVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-----------  322 (477)
Q Consensus       262 ~~~l~~~gv~~~~~~~v~~i~~~~~-------~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~-----------  322 (477)
                      .+.++..+++++.++.+.++..+++       ++. +...+..++....+.++.||+|+|-........           
T Consensus       145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~  224 (305)
T d1chua2         145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGI  224 (305)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHH
T ss_pred             HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccE
Confidence            4556778999999999998876643       333 444444555667789999999998433221110           


Q ss_pred             --ccccceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          323 --LDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       323 --~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                        ..++|..+.+.++|.+|++.+|+.|++||+|+++
T Consensus       225 ~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~  260 (305)
T d1chua2         225 AMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVS  260 (305)
T ss_dssp             HHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGE
T ss_pred             eeccccceeeEecceeEECCcccCCCCCceecccEE
Confidence              1346777888889999999999999999999975

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.8e-11  Score=94.65  Aligned_cols=120  Identities=22%  Similarity=0.298  Sum_probs=91.9

Q ss_pred             CCCCCc-cCCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhc
Q 011787          190 SLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ  268 (477)
Q Consensus       190 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~  268 (477)
                      .+||.+ ..+..+..+..+......+|+|+|||+|.+|++.|..|++...+|++++|++.+..  ++...   ++.....
T Consensus         5 ~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~--~~~~~---~~~~~~~   79 (126)
T d1fl2a2           5 NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--DQVLQ---DKLRSLK   79 (126)
T ss_dssp             CCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--CHHHH---HHHHTCT
T ss_pred             CCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc--ccccc---ccccccc
Confidence            456654 34556666555444555689999999999999999999999999999999986532  33322   2333445


Q ss_pred             CcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          269 KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       269 gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +|++++++++.++..+++.+. +++.+..+++.+++++|.+++++|.
T Consensus        80 ~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          80 NVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             TEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            799999999999998766554 7787777788889999999999883

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=3.2e-11  Score=95.19  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=91.7

Q ss_pred             CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      .+..+..+.........+|+|+|||+|.+|+|.|..|++...+|++++|++.+.  .++.+.+.+.+..+..++.+++++
T Consensus        10 ~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~   87 (126)
T d1trba2          10 KGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNR   87 (126)
T ss_dssp             BTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSC
T ss_pred             cCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecce
Confidence            345565544444444568999999999999999999999999999999998753  367778888888888899999999


Q ss_pred             eEEEEEEcCCeEE-EEEeecCCCc-eEEEEcCEEEEeec
Q 011787          277 KVVGVDLSGDGVK-LTLEPAAGGE-KTILEADVVLVSAG  313 (477)
Q Consensus       277 ~v~~i~~~~~~~~-v~~~~~~~~~-~~~i~~D~vi~a~G  313 (477)
                      .+.++..++.++. +++.+..+++ .+++++|-+++++|
T Consensus        88 ~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          88 TLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9999998876554 7776544443 36799999999887

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.26  E-value=5.7e-13  Score=122.10  Aligned_cols=108  Identities=22%  Similarity=0.242  Sum_probs=72.8

Q ss_pred             HhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-----c-cccceeecCCCCeecC
Q 011787          266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-----L-DKIGVETDKMGRIPVN  339 (477)
Q Consensus       266 ~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~-----~-~~~gl~~~~~g~i~vd  339 (477)
                      +..+..+..++.+..+...++.+.+++.     +++.+.+|.++.+.........+.     + ......++..+...++
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~  295 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTE-----DNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVN  295 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEET-----TSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCC
T ss_pred             hhcccccccccccccccccCccEEEEEC-----CCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCcccc
Confidence            4457788999999999988888888765     667899999999876332111100     0 0000001122333333


Q ss_pred             ----CCCCCCCCCeEEecccCC--CCCchhHHHHHHHHHHHHHcC
Q 011787          340 ----ERFATNIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLAG  378 (477)
Q Consensus       340 ----~~l~t~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~~  378 (477)
                          +.++++.++||++||++.  .|...+.|+.+|+.||+.|++
T Consensus       296 ~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         296 RYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence                234678899999999985  366788899999999998864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.25  E-value=2.3e-10  Score=104.38  Aligned_cols=112  Identities=19%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM  333 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~  333 (477)
                      +..+...+.+.+++.|++++++++|++++.+++++.|.+.     + .++.||.||+|+|...+.-   +..+|+.....
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~-----~-g~i~a~~VViAaG~~s~~l---~~~lg~~~~~~  219 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETA-----N-GSYTADKLIVSMGAWNSKL---LSKLNLDIPDE  219 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEET-----T-EEEEEEEEEECCGGGHHHH---GGGGTEECCTS
T ss_pred             ccccccccccccccccccccCCcEEEEEEEECCEEEEEEC-----C-cEEEcCEEEECCCCcchhh---HHhcCCccccc
Confidence            3467777888899999999999999999999888877753     3 4799999999999655432   55566655332


Q ss_pred             CCeecCCCCCCCCCCeE-EecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          334 GRIPVNERFATNIPGVY-AIGDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       334 g~i~vd~~l~t~~~~vy-a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      .. .+.  .....++++ +.|-.-.+..   .+-..|+..++.+....
T Consensus       220 ~~-~~~--~~P~~~~~~~~~g~~g~g~~---~~p~~G~~~~~~~~~~~  261 (281)
T d2gf3a1         220 HF-IID--LHPEHSNVVIAAGFSGHGFK---FSSGVGEVLSQLALTGK  261 (281)
T ss_dssp             CC-EEE--EETTEEEEEEEECCTTCCGG---GHHHHHHHHHHHHHHSC
T ss_pred             cc-eec--cccCCCCEEEEeccCCcccc---cChhHHHHHHHHHhcCC
Confidence            21 111  112334544 4443322222   23346777777666443

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.25  E-value=2.4e-11  Score=113.06  Aligned_cols=41  Identities=27%  Similarity=0.556  Sum_probs=37.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCcee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC   82 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~   82 (477)
                      ..+||||||+|+||++||++|++.|.+|+||||.+..||..
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            46899999999999999999999999999999988777653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.6e-12  Score=119.68  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC-----CCc--cccceeec
Q 011787          259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG-----LGL--DKIGVETD  331 (477)
Q Consensus       259 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~-----l~~--~~~gl~~~  331 (477)
                      ....+.+++.|++++++++|++|..+++++.+++.     +++++++|.||+|++..--...     +..  .+..-...
T Consensus       211 ~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~-----~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~  285 (383)
T d2v5za1         211 QVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL-----NHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVF  285 (383)
T ss_dssp             HHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEET-----TSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCC
T ss_pred             HHHHHHHHHcCCeEEecCcceEEEecCCeEEEEEC-----CCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhc
Confidence            33445556779999999999999988888888765     6778999999999863211100     000  00000000


Q ss_pred             CCCC-eecCCCCCCCCCCeEEecccCC--CCCchhHHHHHHHHHHHHHc
Q 011787          332 KMGR-IPVNERFATNIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       332 ~~g~-i~vd~~l~t~~~~vya~GD~~~--~~~~~~~A~~~g~~aa~~i~  377 (477)
                      ..+. -.....+.....+++.+|+...  .+.....|+.+|+.+|..|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~  334 (383)
T d2v5za1         286 PPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL  334 (383)
T ss_dssp             CTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCccchhhhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence            0111 1122233455677999997653  34466779999998988875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=2.4e-11  Score=105.09  Aligned_cols=119  Identities=20%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC-CCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      .||||||||||||+.||..++|.|.+++||+++ +.+|+++.+    |............    .....+.       ..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cn----p~~gg~~kg~l~r----eid~kG~-------av   66 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLP----PKPPFPPGSLLER----AYDPKDE-------RV   66 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC----CCSCCCTTCHHHH----HCCTTCC-------CH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccC----CccccCCCcceee----eeeccch-------hh
Confidence            599999999999999999999999999999986 345554322    2211101111110    0000110       00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEe--cCC-EEEEEecCCceEEEEecEEEEccCCCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPS-EVSVDTIEGGNTVVKGKNIIIATGSDV  188 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~-~~~v~~~~g~~~~i~~d~lvlAtG~~~  188 (477)
                      ..+.   .       +.-.......+++++.+.+..+  +.+ -..|.+.+|  .++.++.||||||+-.
T Consensus        67 ~a~r---a-------Q~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G--~~~~AkaVILtTGTFL  124 (230)
T d2cula1          67 WAFH---A-------RAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHH---H-------HHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCS
T ss_pred             hhHH---H-------HHHHHHhhhcCHHHHhccceeeEecccceeeEEeccc--cEEEEeEEEEccCcce
Confidence            0000   0       0011233456899999987654  333 455888888  7899999999999854

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.21  E-value=2.9e-11  Score=110.89  Aligned_cols=42  Identities=36%  Similarity=0.596  Sum_probs=39.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ..+||+|||||++||++|.+|++.|.+|+|+|+++.+||+|.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~   47 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   47 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccc
Confidence            468999999999999999999999999999999999999984

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.21  E-value=3.1e-11  Score=109.88  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG  334 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g  334 (477)
                      ..+...+.+.+++.|++++.+++|++|+.+++.+.+++.     + .++.||.||+|+|.....-   ++.+|+.... +
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~-----~-g~i~a~~vV~AaG~~s~~l---~~~~G~~~~~-~  220 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTP-----S-GDVWANHVVVASGVWSGMF---FKQLGLNNAD-G  220 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEET-----T-EEEEEEEEEECCGGGTHHH---HHHTTCCCCS-S
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecC-----C-eEEEcCEEEECCCccHHHH---HhhcCCCccc-c
Confidence            456777888889999999999999999988777777653     3 4799999999999754321   4455554322 2


Q ss_pred             CeecCCCCCCCCCCeE-EecccCCCCCchhHHHHHHHHHHHHHcCCC
Q 011787          335 RIPVNERFATNIPGVY-AIGDVIPGPMLAHKAEEDGVACVEFLAGKH  380 (477)
Q Consensus       335 ~i~vd~~l~t~~~~vy-a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  380 (477)
                      ...+..+  ...+++| +.|..-.+..+   +-..|...++.+.+..
T Consensus       221 ~p~~~~~--p~~~~~~~~~g~~~~gi~~---~p~~g~~i~~~~~~~~  262 (276)
T d1ryia1         221 KPYIGRH--PEDSRILFAAGHFRNGILL---APATGALISDLIMNKE  262 (276)
T ss_dssp             CCEEEEE--TTEEEEEEEECCSSCTTTT---HHHHHHHHHHHHTTCC
T ss_pred             cceeccc--cCCCCEEECCCCCCCeEEE---CccHHHHHHHHHhcCC
Confidence            2211111  1123444 55543322222   2334666677666543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=9.6e-11  Score=97.45  Aligned_cols=117  Identities=21%  Similarity=0.388  Sum_probs=86.6

Q ss_pred             CCCCCccCCceEecchhhhc-ccCCCCeeEEEcccHHHHHHHHHHHHcCCc-----------------------------
Q 011787          190 SLPGITIDEKRIVSSTGALA-LNEVPKKLVVIGAGYIGLEMGSVWARLGSE-----------------------------  239 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~-----------------------------  239 (477)
                      ++||.  +..++++..+++. ....+++++|||||++|+|+|..+.+.|.+                             
T Consensus         6 ~IpG~--d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T d1ps9a2           6 PIDGI--DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGM   83 (162)
T ss_dssp             CCBTT--TSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCC
T ss_pred             CCCCC--CCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccc
Confidence            45664  4667888877764 345689999999999999999999998864                             


Q ss_pred             --------EEEEEeC-CCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 011787          240 --------VTVVEFA-ADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV  310 (477)
Q Consensus       240 --------Vtli~~~-~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~  310 (477)
                              ++.+... ......++..........++..|+.+++++.+.+++  ++++.+..    +++...++||.||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~----~g~e~~i~aD~Vv~  157 (162)
T d1ps9a2          84 QIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVI----NGETQVLAVDNVVI  157 (162)
T ss_dssp             CCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEE----TTEEEEECCSEEEE
T ss_pred             eeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEec----CCeEEEEECCEEEE
Confidence                    2333322 223334555666777888999999999999999984  55555543    34556799999999


Q ss_pred             eecC
Q 011787          311 SAGR  314 (477)
Q Consensus       311 a~G~  314 (477)
                      |+|.
T Consensus       158 A~Gq  161 (162)
T d1ps9a2         158 CAGQ  161 (162)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            9994

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.17  E-value=5.9e-11  Score=106.95  Aligned_cols=184  Identities=21%  Similarity=0.279  Sum_probs=101.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC-----------------------------------CCCC------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----------------------------------PSMD------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~-----------------------------------~~~~------  254 (477)
                      .++|||+|+.|+.+|..+++.|.+|.++++.. +.                                   +.++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            48999999999999999999999999999753 11                                   0111      


Q ss_pred             ------HHHHHHHHHHHHhcCcEEEeCce-EEEEEEcCCeEEEEEe------ecCCCceEEEEcCEEEEeecCCC-----
Q 011787          255 ------GEIRKQFQRSLEKQKMKFMLKTK-VVGVDLSGDGVKLTLE------PAAGGEKTILEADVVLVSAGRTP-----  316 (477)
Q Consensus       255 ------~~~~~~~~~~l~~~gv~~~~~~~-v~~i~~~~~~~~v~~~------~~~~~~~~~i~~D~vi~a~G~~p-----  316 (477)
                            ..+.+.+...+++.||+++.+.- +.+    +..+.+...      .....+.+.+++|.|++|||.+|     
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~----~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~  157 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLS----ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSP  157 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------CBSSEEECCCCCBCCBCC
T ss_pred             hhheeeeccccchhhhcccccceEEeeeccccc----ccccccccceeccccccCccceEEEeeeeEEEecCCCCccccc
Confidence                  11223345667888999987642 111    111111100      01112456799999999999999     


Q ss_pred             CCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCCceEEEcCC
Q 011787          317 FTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHP  396 (477)
Q Consensus       317 ~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~  396 (477)
                      +.+.+.++..++..+ ++.+.+|+..+|.+.++|++||++........+..+...+..+-.   ........+..+++++
T Consensus       158 ~~~~~~l~~~~i~ts-~~~~~~d~~~~t~Vig~gaiGdv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  233 (259)
T d1onfa1         158 DTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEER---YLNKKENVTEDIFYNV  233 (259)
T ss_dssp             TTTTSSCTTTTCCBS-SSCEEECTTCBCSSSSEEECSTTEEEC---------------------------------CBCC
T ss_pred             cccccccccceeeec-ccccccccCCceeEeeEEEEEEeeehhhhhhhcchhhHhhhcCCc---cccccCCcceEEecCc
Confidence            556656677777655 578899998899999999999998544433332222211111111   1123344555667777


Q ss_pred             CeeeecCCHHHH
Q 011787          397 EVASVGKTEEQV  408 (477)
Q Consensus       397 ~~~~~G~~~~~~  408 (477)
                      ++..++.++.+.
T Consensus       234 ~~~~V~~~~G~~  245 (259)
T d1onfa1         234 QLTPVAINAGRL  245 (259)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             EEEEEEccccee
Confidence            777777666554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=2e-12  Score=115.29  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-------CeEEEEecCCCCCcee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG-------LKTTCIEKRGALGGTC   82 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g-------~~V~lie~~~~~GG~~   82 (477)
                      ++|+|||||||||+||.+|++.|       ++|+|+|+.+.+||++
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~   48 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV   48 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee
Confidence            68999999999999999999986       5899999999999975

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.3e-09  Score=100.76  Aligned_cols=97  Identities=24%  Similarity=0.303  Sum_probs=70.1

Q ss_pred             HHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC-----CCCCCCCC--------ccc
Q 011787          260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR-----TPFTAGLG--------LDK  325 (477)
Q Consensus       260 ~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~-----~p~~~~l~--------~~~  325 (477)
                      .+.+..+..+|+++.++.++++..+++++. +...+..+++-..+.++.||+|||-     ..++....        ...
T Consensus       140 ~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~  219 (311)
T d1kf6a2         140 LFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALS  219 (311)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred             HHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHh
Confidence            345555667899999999999988888776 4444445566667899999999983     22221100        124


Q ss_pred             cceeecCCCCeecCCCCCCCCCCeEEecccC
Q 011787          326 IGVETDKMGRIPVNERFATNIPGVYAIGDVI  356 (477)
Q Consensus       326 ~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~  356 (477)
                      +|.++.+..+|.+++...+..+++|+.|++.
T Consensus       220 aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~  250 (311)
T d1kf6a2         220 HGVPLRDMGGIETDQNCETRIKGLFAVGECS  250 (311)
T ss_dssp             TTCCEESCCEEECCTTSBCSSBTEEECGGGE
T ss_pred             cccceeecccccccccchhcccCCCcCccee
Confidence            5666666678899999889999999999987

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.12  E-value=4.1e-11  Score=103.08  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCC---------CCCHHHHHHHHHHHHhcCcEEEeCceEEEEE
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVP---------SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD  282 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~---------~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~  282 (477)
                      ++++|+|||||++|+++|..|+++|. +|+++++++.+..         .................+..+.....+... 
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-   81 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSEN-   81 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTT-
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccc-
Confidence            57999999999999999999999998 5999999988743         233444555555666667777766554211 


Q ss_pred             EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC--ccccceeecCCCCeecCC-CCCCCCCCeEEecccCCCC
Q 011787          283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGP  359 (477)
Q Consensus       283 ~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~--~~~~gl~~~~~g~i~vd~-~l~t~~~~vya~GD~~~~~  359 (477)
                          ..  ...     ...+..+|.+++++|..+......  ...........+....+. .++|+.+.+|++||+++++
T Consensus        82 ----~~--~~~-----~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~  150 (196)
T d1gtea4          82 ----EI--TLN-----TLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA  150 (196)
T ss_dssp             ----SB--CHH-----HHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC
T ss_pred             ----ee--eee-----hhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCc
Confidence                00  000     123345788899998655433211  111122233344555554 4789999999999999998


Q ss_pred             CchhHHHHHHHHHHHHHc
Q 011787          360 MLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       360 ~~~~~A~~~g~~aa~~i~  377 (477)
                      .++..|..+|+.+|..+.
T Consensus       151 ~~av~a~~~g~~~a~~v~  168 (196)
T d1gtea4         151 NTTVESVNDGKQASWYIH  168 (196)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhhhehhHh
Confidence            888889999988887764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=8.5e-10  Score=102.95  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhcCcEEEeCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       255 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      ..+...+.+..++.+++++..+.+..+... ++.+. .......+++-..+.++.||+|+|-
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG  204 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCC
Confidence            346666677778889999999988887654 34332 3333445666778999999999993

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.07  E-value=2.5e-10  Score=106.98  Aligned_cols=44  Identities=30%  Similarity=0.442  Sum_probs=39.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeec
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~   84 (477)
                      ...++|+|||||+|||+||..|++.+  .+|+|+||++.+||+|..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            34578999999999999999998875  699999999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.07  E-value=4.6e-10  Score=87.15  Aligned_cols=93  Identities=25%  Similarity=0.363  Sum_probs=69.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.         |.                            ++   
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il---------~~----------------------------~d---   61 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL---------PT----------------------------YD---   61 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------TT----------------------------SC---
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc---------cc----------------------------cc---
Confidence            589999999999999999999999999999965441         10                            00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                               ..+.+.+...+++.+++++.+ ++..++.....+...++...++.+|.|++|+|
T Consensus        62 ---------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          62 ---------SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ---------HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ---------chhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                     011222345566778998877 46667777766666566557899999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4.9e-10  Score=87.02  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+.+.+...                                     ++   
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-------------------------------------~d---   61 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------------------------------------FD---   61 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC---
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-------------------------------------cc---
Confidence            57999999999999999999999999999996543110                                     00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe---cCCEEEEEecCCceEEEEecEEEEccC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                               ..+.+.+.+.+++.+++++.+. +..+   +...+.+.+++|  +++.+|.||+|||
T Consensus        62 ---------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~D~vi~a~G  116 (116)
T d1gesa2          62 ---------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIG  116 (116)
T ss_dssp             ---------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             ---------hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCC--CEEEcCEEEEecC
Confidence                     0122334456667799988874 3333   234577888888  7899999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.1e-10  Score=99.97  Aligned_cols=112  Identities=20%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      +++||+||||||+|++||..|+|.|++|+|||+ ...||.+.....+....                  +++ .  ...-
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~-~~~~g~~~~~~~i~~~~------------------~~~-~--~~~~   61 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVENWP------------------GDP-N--DLTG   61 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBCCCST------------------TCC-S--SCBH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEe-ecccccccccchhhhhh------------------ccc-c--ccch
Confidence            357999999999999999999999999999998 45567665543332110                  000 0  0011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecC--CEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                      .           .+.+.......+.++++..+.+..++.  ..+.+....   ..+.++.+++|+|..++
T Consensus        62 ~-----------~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~---~~~~~~~viva~G~~~~  117 (190)
T d1trba1          62 P-----------LLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDN---GEYTCDALIIATGASAR  117 (190)
T ss_dssp             H-----------HHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEESS---CEEEEEEEEECCCEEEC
T ss_pred             H-----------HHHHHHHHHHHhcCcEEecceeEEEecCCCcEEEEEee---eeEeeeeeeeecceeee
Confidence            1           112222334455677777776655443  334555443   47899999999998664

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.5e-11  Score=107.32  Aligned_cols=136  Identities=17%  Similarity=0.157  Sum_probs=75.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      +++++||||||+||+.+|..|++.+  .+|++|+++...--    ..+.-++.+.............+...........+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py----~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY----MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYF   78 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB----CSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCc----cccccceecccccCchhhhhhhhhhcccchhhhhc
Confidence            4588999999999999999999876  46999998654311    00000111111110000000000000000000000


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCCC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP  192 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~~  192 (477)
                      ...++.         ........+++.+|+++.+ ++..++.+..+|.+.+|  +++.||+||+|||+.|+.++
T Consensus        79 ~~~~~~---------~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG--~~i~~d~lViAtG~~~~~~~  141 (213)
T d1m6ia1          79 QPPSFY---------VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTEPNVE  141 (213)
T ss_dssp             SCGGGS---------BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEEECCT
T ss_pred             CChhhh---------hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccc--eeeccceEEEeeeeecchhh
Confidence            000000         0000112345678999887 47788877778888898  78999999999998876443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.7e-10  Score=98.09  Aligned_cols=42  Identities=38%  Similarity=0.692  Sum_probs=36.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG   86 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~   86 (477)
                      .|||+||||||+|++||..+++.|++|+|||++  .||++.+..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~   42 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTV   42 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccc
Confidence            389999999999999999999999999999974  688766543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.03  E-value=1.6e-09  Score=84.62  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+-..              .                      ++  
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~--------------~----------------------~~--   71 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------A----------------------AP--   71 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------T----------------------SC--
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc--------------c----------------------CC--
Confidence            468999999999999999999999999999996543110              0                      00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecCCEEEEEecCCceEEEEecEEEEccC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                                ....+.+.+.+++.||+++.+. +..+....  +.+.+|  +++.+|.+|+|+|
T Consensus        72 ----------~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~--v~l~dg--~~i~~D~vi~a~G  121 (121)
T d1d7ya2          72 ----------ATLADFVARYHAAQGVDLRFERSVTGSVDGV--VLLDDG--TRIAADMVVVGIG  121 (121)
T ss_dssp             ----------HHHHHHHHHHHHTTTCEEEESCCEEEEETTE--EEETTS--CEEECSEEEECSC
T ss_pred             ----------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE--EEECCC--CEEECCEEEEeeC
Confidence                      1122334466778899998774 44455554  456677  7899999999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=1.6e-11  Score=108.71  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCcee
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC   82 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~   82 (477)
                      .+|+||||||||++||.+|++.  |++|+|+|+.+.+||.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~   42 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV   42 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcee
Confidence            4899999999999999999876  78999999999999964

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=1.7e-09  Score=102.56  Aligned_cols=42  Identities=36%  Similarity=0.629  Sum_probs=37.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHH------CCCeEEEEecCCCCCce
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQ------LGLKTTCIEKRGALGGT   81 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~------~g~~V~lie~~~~~GG~   81 (477)
                      ++.+||||||||||||++||+.|++      .|++|+||||...+|..
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            3446999999999999999999997      79999999998888754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=3.9e-10  Score=102.58  Aligned_cols=50  Identities=32%  Similarity=0.434  Sum_probs=44.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH-CCCeEEEEecCCCCCceeeccCccCch
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALGGTCLNVGCIPSK   91 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~GG~~~~~~~~p~~   91 (477)
                      .++||+||||||||++||++|++ .|++|+|+|+++.+||.|.+.+|.+++
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~   82 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSA   82 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCH
Confidence            35899999999999999999987 599999999999999999888876544

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=2.9e-09  Score=83.76  Aligned_cols=109  Identities=19%  Similarity=0.238  Sum_probs=84.2

Q ss_pred             ceEecchhhhc--ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          199 KRIVSSTGALA--LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       199 ~~~~~~~~~~~--~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      +.+..+..+..  ....+|+|+|||+|.+|++.|..|++...+||+++|++.+-.  ++..   +.+.+...+|++++++
T Consensus        17 kGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra--~~~~---~~~l~~~~nI~v~~~~   91 (130)
T d1vdca2          17 RGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALSNPKIDVIWNS   91 (130)
T ss_dssp             TTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSE
T ss_pred             CcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc--chhh---hhccccCCceEEEecc
Confidence            45555444432  244689999999999999999999999999999999987643  3333   3344456679999999


Q ss_pred             eEEEEEEcCC--eE-EEEEeecCCCceEEEEcCEEEEee
Q 011787          277 KVVGVDLSGD--GV-KLTLEPAAGGEKTILEADVVLVSA  312 (477)
Q Consensus       277 ~v~~i~~~~~--~~-~v~~~~~~~~~~~~i~~D~vi~a~  312 (477)
                      ++.++..++.  .+ .+.+.+..+++..++++|.+++++
T Consensus        92 ~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          92 SVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            9999998753  34 477777778888999999999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.94  E-value=2.5e-09  Score=85.07  Aligned_cols=93  Identities=22%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+-...             ..                         
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~-------------~~-------------------------   76 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-------------TA-------------------------   76 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-------------SC-------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc-------------cc-------------------------
Confidence            4689999999999999999999999999999965441100             00                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec----CCE-EEEEecCCceEEEEecEEEEccC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS----PSE-VSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~----~~~-~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                                ......+.+.+++.+|+++.+. +..++    ... ..+.+++|  .++.+|.||+|+|
T Consensus        77 ----------~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G--~~i~~D~vi~a~G  133 (133)
T d1q1ra2          77 ----------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG--TRLPADLVIAGIG  133 (133)
T ss_dssp             ----------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS--CEEECSEEEECCC
T ss_pred             ----------hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC--CEEECCEEEEeeC
Confidence                      0012223445667789988773 34332    222 34778888  7899999999998

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=3.3e-10  Score=101.76  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=41.6

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      |++.|||||||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence            66789999999999999999999999999999999999999764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.93  E-value=1.7e-08  Score=92.81  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       254 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                      +..+...+.+.+++.|++++.+++|+++..+++++. |.+      +..+++||.||+|+|....
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T------~~g~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQT------ADGVIPADIVVSCAGFWGA  205 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE------TTEEEECSEEEECCGGGHH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEec------cceeEECCEEEEecchhHH
Confidence            456777788888999999999999999999988876 443      3347999999999997543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.92  E-value=7e-10  Score=93.95  Aligned_cols=105  Identities=23%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ++|||||||++|+.+|..|++.+  .+|+|+|+++.....      ...       ....  .     ........... 
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~------~~~-------~~~~--~-----~~~~~~~~~~~-   61 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTC------YLS-------NEVI--G-----GDRKLESIKHG-   61 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECS------TTH-------HHHH--H-----TSSCGGGGEEC-
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccc------ccc-------cccc--c-----hhhhhhhhhhh-
Confidence            58999999999999999999986  589999996542111      000       0000  0     00000000000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeEEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                        .......++++..+.....+.....+.+.++  +.+.||+||+|||.++.
T Consensus        62 ------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~li~atG~~~~  109 (186)
T d1fcda1          62 ------------------YDGLRAHGIQVVHDSATGIDPDKKLVKTAGG--AEFGYDRCVVAPGIELI  109 (186)
T ss_dssp             ------------------SHHHHTTTEEEECCCEEECCTTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             ------------------hhhccccceeEeeeeeEeeeeccceeecccc--eeeccceEEEEeccccc
Confidence                              1223456788888888777777666777776  78999999999998874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=2.4e-09  Score=89.33  Aligned_cols=89  Identities=22%  Similarity=0.263  Sum_probs=71.7

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----------CCCHHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------SMDGEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----------~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ..+|+|+|||+|+.|+++|..|+++|.+|+++++.+.+..           ....++.+++.+.+++.||++++++.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            3479999999999999999999999999999999887632           12246677888888999999999987641


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                                         .....+|.||+|+|..|+..
T Consensus       121 -------------------~~~~~~d~vilAtG~~~~~~  140 (179)
T d1ps9a3         121 -------------------DQLQAFDETILASGIPNRAL  140 (179)
T ss_dssp             -------------------SSSCCSSEEEECCCEECCTT
T ss_pred             -------------------cccccceeEEEeecCCCccc
Confidence                               11346899999999987653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.89  E-value=2.9e-08  Score=77.10  Aligned_cols=94  Identities=22%  Similarity=0.316  Sum_probs=67.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+-+|..|++.|.+|+++++.+.+-         |.                            ++  
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll---------~~----------------------------~d--   62 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL---------PA----------------------------VD--   62 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------TT----------------------------SC--
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC---------Cc----------------------------cc--
Confidence            3689999999999999999999999999999865431         10                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCC-ceEEEEecEEEEccC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEG-GNTVVKGKNIIIATG  185 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g-~~~~i~~d~lvlAtG  185 (477)
                                ..+...+...+++.+++++.+. +..+  +.+...+...++ ..+++.+|+|++|+|
T Consensus        63 ----------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          63 ----------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ----------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ----------chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                      1123334566778899999884 3433  344555554433 346899999999998

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.86  E-value=1.3e-08  Score=82.60  Aligned_cols=99  Identities=18%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEE-
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-  289 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~-  289 (477)
                      ..+++|+|||||.+|+|+|..+.++|. +|++++|++..-....+    .....+...++.++.+..+.++...++... 
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~----~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~  118 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP----EEVELAKEEKCEFLPFLSPRKVIVKGGRIVA  118 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH----HHHHHHHHTTCEEECSEEEEEEEEETTEEEE
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccch----hheeecccccceeEeccccEEEEecCCceEE
Confidence            347899999999999999999999986 48899888755222121    222334567899999999888887666443 


Q ss_pred             EEEe---ec-------CCCceEEEEcCEEEEeecC
Q 011787          290 LTLE---PA-------AGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       290 v~~~---~~-------~~~~~~~i~~D~vi~a~G~  314 (477)
                      +...   ..       .+++..+++||.|++|+|.
T Consensus       119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            2221   11       1234567999999999983

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.84  E-value=1.1e-08  Score=80.10  Aligned_cols=88  Identities=22%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+.+.+-+       .+                                  
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-------~d----------------------------------   71 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------LD----------------------------------   71 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------CC----------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-------CC----------------------------------
Confidence            5799999999999999999999999999998654311       00                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS  186 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~  186 (477)
                               ..+.+.+...+++.+++++.+ .+..++.+.+   ..++  ..+.+|.+|+|+|.
T Consensus        72 ---------~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v---~~~~--~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 ---------EELSNMIKDMLEETGVKFFLNSELLEANEEGV---LTNS--GFIEGKVKICAIGI  121 (122)
T ss_dssp             ---------HHHHHHHHHHHHHTTEEEECSCCEEEECSSEE---EETT--EEEECSCEEEECCE
T ss_pred             ---------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEE---EeCC--CEEECCEEEEEEEe
Confidence                     011222345567789999887 4555665543   2344  68999999999994

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.83  E-value=3.7e-08  Score=91.74  Aligned_cols=165  Identities=18%  Similarity=0.133  Sum_probs=106.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC--CcEEEEEeCCCcCC----------------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVP----------------------------------------  251 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g--~~Vtli~~~~~~~~----------------------------------------  251 (477)
                      -|+|+|||||++|+-+|..|++.+  .+|+++++++.+..                                        
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            378999999999999999998876  48999999976410                                        


Q ss_pred             ------------------------CC--CHHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCce-EEEE
Q 011787          252 ------------------------SM--DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK-TILE  304 (477)
Q Consensus       252 ------------------------~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~-~~i~  304 (477)
                                              .+  -.++.+.+....+..+..+.++++|++++.++++..|++.+...++. ....
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                    00  02456666666666788899999999999999998888876554433 4567


Q ss_pred             cCEEEEeecCC--CCCCCCC---------ccccceeecCCCCeecCCC---CCCCCCCeEEecccCCCCCchhHHHHHHH
Q 011787          305 ADVVLVSAGRT--PFTAGLG---------LDKIGVETDKMGRIPVNER---FATNIPGVYAIGDVIPGPMLAHKAEEDGV  370 (477)
Q Consensus       305 ~D~vi~a~G~~--p~~~~l~---------~~~~gl~~~~~g~i~vd~~---l~t~~~~vya~GD~~~~~~~~~~A~~~g~  370 (477)
                      +|.||+|+|..  |+...+.         ++.....+-.+|.-..+-+   +....|.+..+|=...... ......|+.
T Consensus       164 ~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~-~~~~e~Qa~  242 (335)
T d2gv8a1         164 FDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVP-FPTSQAQAA  242 (335)
T ss_dssp             ESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCH-HHHHHHHHH
T ss_pred             eeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEEec-CCchHHHHH
Confidence            99999999954  4433210         0000000000111111111   1235678888885443332 344677888


Q ss_pred             HHHHHHcCC
Q 011787          371 ACVEFLAGK  379 (477)
Q Consensus       371 ~aa~~i~~~  379 (477)
                      .+++-+.++
T Consensus       243 ~~a~~~~g~  251 (335)
T d2gv8a1         243 FLARVWSGR  251 (335)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            888888775

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=7e-09  Score=86.24  Aligned_cols=149  Identities=21%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHHH
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM  124 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  124 (477)
                      +|+|||||++|+.+|..|++ +.+|+|+++++.+.-.      .|        .........     .......      
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~------~~--------~~~~~~~~~-----~~~~~~~------   55 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS------KP--------MLSHYIAGF-----IPRNRLF------   55 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCC------ST--------THHHHHTTS-----SCGGGGC------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccc------cc--------chhhhhhhh-----hhhhhhh------
Confidence            69999999999999999975 6799999986533110      00        000000000     0000000      


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCCCC---CCCccCCce
Q 011787          125 MAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL---PGITIDEKR  200 (477)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~~~---~g~~~~~~~  200 (477)
                                  ......+.+.+++++.+ .+..++.....+.. ++  .++.||++|+|+|..|..+   .++..+. .
T Consensus        56 ------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~-~~--~~i~~D~li~a~G~~~~~~~~~~gl~~~~-~  119 (167)
T d1xhca1          56 ------------PYSLDWYRKRGIEIRLAEEAKLIDRGRKVVIT-EK--GEVPYDTLVLATGAPNVDLARRSGIHTGR-G  119 (167)
T ss_dssp             ------------SSCHHHHHHHTEEEECSCCEEEEETTTTEEEE-SS--CEEECSEEEECCCEECCHHHHHTTCCBSS-S
T ss_pred             ------------HHHHHHHHhccceeeeeccccccccccccccc-cc--cccccceeEEEEEecCCchhhhcCceeCC-c
Confidence                        00123445568888766 35566655444443 33  4799999999999876422   1222211 1


Q ss_pred             Eecchhhhc----ccCC----CCeeEEEcccHHHHHHHHHHHH
Q 011787          201 IVSSTGALA----LNEV----PKKLVVIGAGYIGLEMGSVWAR  235 (477)
Q Consensus       201 ~~~~~~~~~----~~~~----~~~v~IiG~G~~g~e~a~~l~~  235 (477)
                      +...+.+..    ....    ..+..++|++..|++.|..+++
T Consensus       120 i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~  162 (167)
T d1xhca1         120 ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD  162 (167)
T ss_dssp             EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred             eeeccccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence            221111110    0000    1123467889999998887765

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.82  E-value=9.1e-09  Score=88.21  Aligned_cols=114  Identities=22%  Similarity=0.235  Sum_probs=70.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccCh
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL  121 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  121 (477)
                      ++|+|||||++|+.+|..|++.  +.+|+++|+++.+.    +..|.          ........+..    ......  
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~----~~~~~----------~~~~l~~~~~~----~~~~~~--   60 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS----FLSAG----------MQLYLEGKVKD----VNSVRY--   60 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS----BCGGG----------HHHHHTTSSCC----GGGSBS--
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc----ccccC----------cchhhcccccc----hHHHHH--
Confidence            4799999999999999999987  56899999965441    00000          00000000000    000000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCC--EEEEE-ecCCceEEEEecEEEEccCCCCCCCCC
Q 011787          122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS--EVSVD-TIEGGNTVVKGKNIIIATGSDVKSLPG  193 (477)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~--~~~v~-~~~g~~~~i~~d~lvlAtG~~~~~~~g  193 (477)
                                      .....+++.+++++.+ .+..++.+  .+++. ..+|+...+.||++|+|+|+.+..+++
T Consensus        61 ----------------~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g  120 (198)
T d1nhpa1          61 ----------------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDG  120 (198)
T ss_dssp             ----------------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC
T ss_pred             ----------------hhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccc
Confidence                            0123456679998776 46667654  44444 456667789999999999988755443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=1.5e-09  Score=92.67  Aligned_cols=35  Identities=34%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ++||+||||||||++||..|+|.|++|+|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            58999999999999999999999999999998543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.79  E-value=5.4e-08  Score=75.35  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=65.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+++|||||+.|+.+|..+.++   |.+|+++++.+.+.         |.                            ++
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il---------~~----------------------------~d   61 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------RG----------------------------FD   61 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------TT----------------------------SC
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc---------cc----------------------------cc
Confidence            5899999999999999876654   88999999854431         00                            00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe---cCCEEEEEecCCceEEEEecEEEEccC
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                                  ..+...+...+++.+++++.+. +..+   +.....+.+.+|  .++.+|.+|+|||
T Consensus        62 ------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g--~~i~~D~Vi~a~G  116 (117)
T d1feca2          62 ------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIG  116 (117)
T ss_dssp             ------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             ------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC--CEEEcCEEEEecC
Confidence                        1122334566788899999884 4444   234567888888  6899999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.76  E-value=7e-08  Score=74.70  Aligned_cols=91  Identities=24%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+|+.+.+...                                     ++   
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-------------------------------------~d---   62 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-------------------------------------FE---   62 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------------------------------------SC---
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc-------------------------------------cc---
Confidence            68999999999999999999999999999996654110                                     00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEe-cCCceEEEEecEEEEc
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDT-IEGGNTVVKGKNIIIA  183 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~-~~g~~~~i~~d~lvlA  183 (477)
                               ..+...+.+.+++.+++++.+. +..+  +.+...+.. .+|+.+++.+|.|++.
T Consensus        63 ---------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 ---------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             ---------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             ---------chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence                     0122334456778899999884 4444  344555543 4555678999999973

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.3e-08  Score=78.25  Aligned_cols=92  Identities=20%  Similarity=0.270  Sum_probs=66.9

Q ss_pred             CcEEEECCChHHHHHHHHHHH----CCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCcccccccc
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQ----LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV  119 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~----~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  119 (477)
                      .+++|||||+.|+.+|..|++    .|.+|+++++++.+-..     ..|                              
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~-----~~~------------------------------   82 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK-----ILP------------------------------   82 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-----TSC------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc-----cCC------------------------------
Confidence            589999999999999998864    48999999996543110     000                              


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEecCCceEEEEecEEEEccC
Q 011787          120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                                   ..+...+.+.+++.||+++.++ +..+  +.....+.+.+|  +++.+|.+|+|+|
T Consensus        83 -------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G--~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          83 -------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVG  136 (137)
T ss_dssp             -------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCC
T ss_pred             -------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEEeec
Confidence                         0122234456778899998874 3333  466778888898  7899999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.75  E-value=6.5e-08  Score=74.66  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=65.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.+-         |.                            ++  
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il---------~~----------------------------~d--   62 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL---------RK----------------------------FD--   62 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC---------TT----------------------------SC--
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc---------cc----------------------------cc--
Confidence            3689999999999999999999999999999965431         10                            00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe---cCCEEEEEecCCceEEE-EecEEEEcc
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIEGGNTVV-KGKNIIIAT  184 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~v~~~~g~~~~i-~~d~lvlAt  184 (477)
                                ..+.+.+.+.+++.+|+++.+. +..+   +...+.+.+.+|  +.+ .+|.||+|.
T Consensus        63 ----------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ----------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG--RIYEHFDHVIYCV  117 (117)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS--CEEEEESEEEECC
T ss_pred             ----------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCC--CEEEeCCEEEEeC
Confidence                      1123334556777899998873 3333   345678888888  444 589999983

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.5e-09  Score=98.01  Aligned_cols=42  Identities=33%  Similarity=0.488  Sum_probs=39.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN   84 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   84 (477)
                      |+|++|||||++|++||..|++.|.+|+|+|+++.+||.|..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence            589999999999999999999999999999999999998743

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.71  E-value=3.2e-08  Score=90.19  Aligned_cols=156  Identities=17%  Similarity=0.247  Sum_probs=102.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---------------------CCC----------------HHH
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------------------SMD----------------GEI  257 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------------------~~~----------------~~~  257 (477)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                     ...                +++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            4699999999999999999999999999998765410                     000                356


Q ss_pred             HHHHHHHHHhcCc--EEEeCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCC
Q 011787          258 RKQFQRSLEKQKM--KFMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM  333 (477)
Q Consensus       258 ~~~~~~~l~~~gv--~~~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~  333 (477)
                      .+.+++..++.++  .+.++++|+++..++  +...+++.     ++.++.+|.+|.|+|.......  ..-.++++...
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~-----~~~~~~~~~~i~atG~ls~~~~--p~~~~~~i~g~  160 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN-----HGDRIRARYLIMASGQLSDALT--GALFKIDIRGV  160 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET-----TCCEEEEEEEEECCCSCCCCTT--HHHHTSEEECG
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccc-----cccccccceEEEeecccccccC--CcccccccccC
Confidence            7777888888888  589999999997543  44566654     5678999999999996433321  11223332222


Q ss_pred             CCeecC----CCCC-------CCCCCeEEec-ccCCC--CCchhHHHHHHHHHHHHHc
Q 011787          334 GRIPVN----ERFA-------TNIPGVYAIG-DVIPG--PMLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       334 g~i~vd----~~l~-------t~~~~vya~G-D~~~~--~~~~~~A~~~g~~aa~~i~  377 (477)
                      +++...    +..+       ...||.|.++ --+..  ......+..|+..+++.|.
T Consensus       161 ~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~  218 (298)
T d1w4xa1         161 GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA  218 (298)
T ss_dssp             GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHH
Confidence            222211    1111       3689999974 33321  1234456667777777664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.71  E-value=3e-08  Score=77.47  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+-+|..+++.|.+|+++|+.+.+-..              .                       +  
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~--------------~-----------------------d--   66 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG--------------A-----------------------D--   66 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT--------------S-----------------------C--
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc--------------c-----------------------h--
Confidence            468999999999999999999999999999996543110              0                       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEE--ecCCceEEEEecEEEEccC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVD--TIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~--~~~g~~~~i~~d~lvlAtG  185 (477)
                                ..+.+.+...+++.+++++.++ +..+  +.+...+.  ..+|..+++.+|+|++|+|
T Consensus        67 ----------~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          67 ----------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             ----------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             ----------hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence                      1122334556777889888774 3333  34444444  3445456799999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=1.7e-07  Score=72.80  Aligned_cols=92  Identities=17%  Similarity=0.293  Sum_probs=62.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|++++..+.+                                      ++   
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~--------------------------------------~D---   59 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------------------------------------FD---   59 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTT--------------------------------------SC---
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhcc--------------------------------------CC---
Confidence            5799999999999999999999999999987422110                                      00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe---c---CCEEEEEecC---CceEEEEecEEEEccC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---S---PSEVSVDTIE---GGNTVVKGKNIIIATG  185 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~---~~~~~v~~~~---g~~~~i~~d~lvlAtG  185 (477)
                               ..+.+.+...+++.+|+++.+. +..+   +   .....+....   ++...+.+|.|++|+|
T Consensus        60 ---------~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          60 ---------QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             ---------HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             ---------HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                     1123334566788899998883 3322   2   2234444322   2234578999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.71  E-value=9.3e-08  Score=74.58  Aligned_cols=92  Identities=25%  Similarity=0.241  Sum_probs=63.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+.+|..|+++|.+|+++|+.+.+-+         ..                           ++  
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~---------~~---------------------------~d--   71 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG---------VY---------------------------LD--   71 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT---------TT---------------------------CC--
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc---------cc---------------------------cc--
Confidence            36899999999999999999999999999999654310         00                           00  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC-CEEEEEecCCceEEEEecEEEEcc
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP-SEVSVDTIEGGNTVVKGKNIIIAT  184 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~-~~~~v~~~~g~~~~i~~d~lvlAt  184 (477)
                                ......+.+.+++.+++++.++ +..+.. ........+|  .++.+|.||+|.
T Consensus        72 ----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg--~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 ----------KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDK--NAYDADLVVVAV  123 (123)
T ss_dssp             ----------HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESS--CEEECSEEEECS
T ss_pred             ----------hhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCC--CEEECCEEEEEC
Confidence                      0122334556778899999884 444543 3333334566  689999999983

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.68  E-value=2.3e-08  Score=93.95  Aligned_cols=39  Identities=44%  Similarity=0.549  Sum_probs=34.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHH----CCCeEEEEecCCCCCce
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQ----LGLKTTCIEKRGALGGT   81 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~----~g~~V~lie~~~~~GG~   81 (477)
                      ++||||||+|+||++||++|++    .|++|+||||....||.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            5899999999999999999975    58999999997766544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.4e-07  Score=72.40  Aligned_cols=93  Identities=20%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+-         |.                            ++   
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l---------~~----------------------------~d---   62 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL---------RS----------------------------FD---   62 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------TT----------------------------SC---
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc---------cc----------------------------hh---
Confidence            689999999999999999999999999999965431         10                            00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe--cCCEEEEEe---cCCc----eEEEEecEEEEccC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDT---IEGG----NTVVKGKNIIIATG  185 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~~v~~---~~g~----~~~i~~d~lvlAtG  185 (477)
                               ..+.+.+...+++.+++++.+. +..+  +.+.+.+..   ..|.    ...+.+|.|++|+|
T Consensus        63 ---------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          63 ---------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ---------HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             ---------hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence                     1122334556677899988774 3334  334443332   2331    24578999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.65  E-value=2e-07  Score=72.59  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=63.3

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChH
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP  122 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  122 (477)
                      ..+++|||||+.|+-.|..|++.|.+|+++++.+.+.         |.                     +       +  
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l---------~~---------------------~-------d--   62 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK---------LI---------------------K-------D--   62 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------TC---------------------C-------S--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh---------cc---------------------c-------c--
Confidence            3689999999999999999999999999999865431         00                     0       0  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEecC---CEE-EE-EecCCceEEEEecEEEEccC
Q 011787          123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEV-SV-DTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~-~v-~~~~g~~~~i~~d~lvlAtG  185 (477)
                                ....+.+...+++.+++++.++ +..+..   ... .+ ....+..+++.+|.||+|+|
T Consensus        63 ----------~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          63 ----------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ----------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ----------cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                      0122234456677889988774 333422   111 12 22233347899999999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.64  E-value=1.5e-08  Score=85.68  Aligned_cols=106  Identities=15%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+|+|||||++|+.+|..|++.|.++.|++..+.....+.       ...+...  +..   ......+.          
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~-------~~~l~~~--~~~---~~~~~~~~----------   61 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD-------RPPLSKD--FMA---HGDAEKIR----------   61 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC-------SGGGGTT--HHH---HCCGGGSB----------
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchh-------hHHHhhh--hhh---hhhhhhHH----------
Confidence            4699999999999999999999877666554332211100       0000000  000   00000000          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccCCCCC
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK  189 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG~~~~  189 (477)
                                      .......+++++.+ .+..++.....+.+.+|  +++.||.+|+|+|..|.
T Consensus        62 ----------------~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~~g--~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          62 ----------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             ----------------CCGGGSTTCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred             ----------------HHHhhcCCeEEEEeccccccccccceeEecCC--cEeeeeeEEEEEEEEcc
Confidence                            01233457888877 46667766667777888  78999999999998875

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.64  E-value=2.6e-07  Score=71.34  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHC---CCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD  120 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  120 (477)
                      .+++|||||+.|+.+|..+.++   +.+|+|+|+.+.+         .|.                            ++
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i---------L~~----------------------------~d   63 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI---------LRG----------------------------FD   63 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS---------STT----------------------------SC
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh---------hcc----------------------------cc
Confidence            5899999999999999877765   4679999985543         010                            00


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec---CCEEEEEecCCceEEEEecEEEEcc
Q 011787          121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIAT  184 (477)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~v~~~~g~~~~i~~d~lvlAt  184 (477)
                                  ....+.+...+++.||+++.+. +..++   ...+.+.+++|  +++.+|.||+|.
T Consensus        64 ------------~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G--~~i~~D~Vi~AI  117 (117)
T d1aoga2          64 ------------HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESG--KKMDFDLVMMAI  117 (117)
T ss_dssp             ------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS--CEEEESEEEECS
T ss_pred             ------------hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCC--cEEEeCEEEEeC
Confidence                        1123334566788899999884 44443   44678888888  679999999983

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1e-08  Score=96.43  Aligned_cols=43  Identities=30%  Similarity=0.569  Sum_probs=39.2

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      ..+.||+|||||+|||+||+.|++.|++|+|+|+++.+||.+.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence            3457899999999999999999999999999999999999653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.62  E-value=1.3e-08  Score=91.36  Aligned_cols=37  Identities=22%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      +..+|+||||||||+++|..|++.|++|+|+||++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3468999999999999999999999999999997654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=3e-08  Score=90.37  Aligned_cols=34  Identities=24%  Similarity=0.547  Sum_probs=32.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ++||+||||||+|+++|..|++.|.+|+|+||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3699999999999999999999999999999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.57  E-value=2e-08  Score=92.53  Aligned_cols=41  Identities=24%  Similarity=0.520  Sum_probs=38.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL   83 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~   83 (477)
                      +++|+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~   42 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY   42 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeee
Confidence            47899999999999999999999999999999999999763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=6e-07  Score=69.69  Aligned_cols=91  Identities=19%  Similarity=0.304  Sum_probs=62.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+.+|..|+++|.+|+|+|+.+.+-         |.                            ++   
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l---------~~----------------------------~d---   63 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG---------AS----------------------------MD---   63 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------SS----------------------------SC---
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc---------hh----------------------------hh---
Confidence            689999999999999999999999999999965441         10                            00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEe----cCCEEEEEecC---CceEEEEecEEEEc
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI----SPSEVSVDTIE---GGNTVVKGKNIIIA  183 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~~~~~v~~~~---g~~~~i~~d~lvlA  183 (477)
                               ..+...+...+++.+|+++.+. +..+    +...+.+...+   ++..++.+|.|++|
T Consensus        64 ---------~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 ---------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ---------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ---------hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence                     1122334556777899998874 3333    22234444332   34568999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.52  E-value=5.2e-07  Score=70.17  Aligned_cols=92  Identities=17%  Similarity=0.318  Sum_probs=64.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeeccCccCchhhhhhhHHHHHHHhhhhhCCccccccccChHH
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA  123 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  123 (477)
                      .+++|||||+.|+-+|..+++.|.+|+|+++.+.+-         |.                            ++   
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l---------~~----------------------------~d---   65 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV---------PT----------------------------MD---   65 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------TT----------------------------SC---
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC---------ch----------------------------hh---
Confidence            689999999999999999999999999999965431         10                            00   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCeEEEEeE-EEEec--CCEE--EEEe-cCCceEEEEecEEEEcc
Q 011787          124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEV--SVDT-IEGGNTVVKGKNIIIAT  184 (477)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~~--~v~~-~~g~~~~i~~d~lvlAt  184 (477)
                               ..+...+...+++.+++++.+. +..++  .+.+  .+.. .+|+.+.+.+|+|++|.
T Consensus        66 ---------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 ---------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             ---------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ---------hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                     1122334566778899998875 44453  3333  3443 34555779999999983

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.48  E-value=7e-08  Score=86.20  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=36.5

Q ss_pred             CCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCc
Q 011787           39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG   80 (477)
Q Consensus        39 ~~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG   80 (477)
                      ||.+.+||+|||||++|+++|++|+++|.+|+|+||+...+|
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            456678999999999999999999999999999999654333

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.47  E-value=5.2e-08  Score=83.06  Aligned_cols=41  Identities=29%  Similarity=0.488  Sum_probs=37.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCCceee
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCL   83 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~GG~~~   83 (477)
                      ..+|+||||||+||+||.+|+++|+ +|+|+||.+.+||.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            3689999999999999999999998 5999999999988643

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=1.1e-06  Score=76.31  Aligned_cols=124  Identities=19%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             CCCCCCccCCceEecchhhhccc------------CCCCeeEEEcccHHHHHHHHHHHHc--------------------
Q 011787          189 KSLPGITIDEKRIVSSTGALALN------------EVPKKLVVIGAGYIGLEMGSVWARL--------------------  236 (477)
Q Consensus       189 ~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~v~IiG~G~~g~e~a~~l~~~--------------------  236 (477)
                      ..+||.  +...+++..++..+.            ..+++|+|||+|.+|+++|..+.+.                    
T Consensus         4 L~IPGe--dl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~   81 (225)
T d1cjca1           4 LDIPGE--ELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS   81 (225)
T ss_dssp             CCCTTT--TSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC
T ss_pred             CCCCCC--CCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhcc
Confidence            356774  356688877776431            1279999999999999999999873                    


Q ss_pred             C-CcEEEEEeCCCc-CCCCCHHHHHHH-----------------------------------HHH--------------H
Q 011787          237 G-SEVTVVEFAADI-VPSMDGEIRKQF-----------------------------------QRS--------------L  265 (477)
Q Consensus       237 g-~~Vtli~~~~~~-~~~~~~~~~~~~-----------------------------------~~~--------------l  265 (477)
                      | .+|+++.|++.. ++.-++++.+..                                   .+.              -
T Consensus        82 g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
T d1cjca1          82 RVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRAS  161 (225)
T ss_dssp             CCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred             CCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccc
Confidence            4 479999988765 333233332211                                   111              1


Q ss_pred             HhcCcEEEeCceEEEEEEcCC--eEE-EEEeec------------CCCceEEEEcCEEEEeecC
Q 011787          266 EKQKMKFMLKTKVVGVDLSGD--GVK-LTLEPA------------AGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       266 ~~~gv~~~~~~~v~~i~~~~~--~~~-v~~~~~------------~~~~~~~i~~D~vi~a~G~  314 (477)
                      ..+++.+.+.....++..+++  .+. +++...            .+|+...++||+||.|+|+
T Consensus       162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            235688999999999988754  233 333210            1244567999999999995

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.36  E-value=1.4e-06  Score=77.56  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=75.5

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC------CCHHHHH----------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRK----------------------------  259 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~------~~~~~~~----------------------------  259 (477)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++++.....      +.+....                            
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   83 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence            578999999999999999999999999999987654221      1111111                            


Q ss_pred             ----------------HHHHH-HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          260 ----------------QFQRS-LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       260 ----------------~~~~~-l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                                      .+... -...++.+.++..+.++...++++.+++.     ++.++.+|++|.|.|..+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~-----dG~~~~~d~~v~adG~~s~~  154 (265)
T d2voua1          84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS-----DGTKAEANWVIGADGGASVV  154 (265)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET-----TSCEEEESEEEECCCTTCHH
T ss_pred             eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEEC-----CCCEEEEEEEeccccccccc
Confidence                            11111 12346788899999999988888888876     56789999999999976643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=1e-07  Score=87.65  Aligned_cols=50  Identities=34%  Similarity=0.394  Sum_probs=43.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEecCCCCCceeeccCccCch
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSK   91 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~   91 (477)
                      ..+||+||||||||++||.+|+++  |++|+|+|+++.+||.+...++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  100 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSA  100 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEecCEeCCH
Confidence            468999999999999999999964  89999999999999987766665543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=1.2e-06  Score=78.92  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=33.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecCCCCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALG   79 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~G   79 (477)
                      .||+||||||||+++|..|++.|. +|+|+||.+.++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            689999999999999999999995 999999987764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.29  E-value=7.5e-07  Score=67.34  Aligned_cols=99  Identities=11%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             CCCCCcc-----CCceEecchhhhcccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHH
Q 011787          190 SLPGITI-----DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRS  264 (477)
Q Consensus       190 ~~~g~~~-----~~~~~~~~~~~~~~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~  264 (477)
                      .+||++.     .+..+++...-......+|+|+|||+|.+|+++|..|++.+.+++++.+++.....            
T Consensus         3 ~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~------------   70 (107)
T d2gv8a2           3 NIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ------------   70 (107)
T ss_dssp             CCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB------------
T ss_pred             CCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc------------
Confidence            4566542     13444443333333446899999999999999999999999999888877654221            


Q ss_pred             HHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEE-cCEEEEe
Q 011787          265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE-ADVVLVS  311 (477)
Q Consensus       265 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~-~D~vi~a  311 (477)
                        ..++..  ...+.+++.++..  +.+.     ++..++ .|.||+|
T Consensus        71 --~~~~~~--~~~i~~~~~~~~~--v~~~-----dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          71 --NESLQQ--VPEITKFDPTTRE--IYLK-----GGKVLSNIDRVIYC  107 (107)
T ss_dssp             --CSSEEE--ECCEEEEETTTTE--EEET-----TTEEECCCSEEEEC
T ss_pred             --ccccee--cCCeeEEecCCCE--EEEc-----CCCEEeCCCEEEEC
Confidence              112222  2345666544443  4443     566765 7999987

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.28  E-value=1.6e-05  Score=71.17  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcCCC-----CCHH-------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPS-----MDGE-------------------------------  256 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~~~-----~~~~-------------------------------  256 (477)
                      |-+|+|||||++|+-+|..|++.|. +|+++++++.+...     +.+.                               
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3479999999999999999999995 89999998865321     1111                               


Q ss_pred             -------------------------HHHHHHH--HHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 011787          257 -------------------------IRKQFQR--SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL  309 (477)
Q Consensus       257 -------------------------~~~~~~~--~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi  309 (477)
                                               .......  .....++.+.++++++.+...++++.+.+.+. +++.+++.+|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g-~~~~~~~~ad~vi  159 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDG-HGKPQALGADVLV  159 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEET-TSCEEEEEESEEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcC-CCCeEEEeeceee
Confidence                                     0111111  12235788888999999998889998888753 3345789999999


Q ss_pred             EeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCC--C---CchhHHHHHHHHHHHHHc
Q 011787          310 VSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG--P---MLAHKAEEDGVACVEFLA  377 (477)
Q Consensus       310 ~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~--~---~~~~~A~~~g~~aa~~i~  377 (477)
                      .|-|........    .    .................++..+||++..  |   .-...|+.++...+..+.
T Consensus       160 ~ADG~~S~vr~~----~----~~~~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         160 GADGIHSAVRAH----L----HPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA  224 (288)
T ss_dssp             ECCCTTCHHHHH----H----CTTCCCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred             ccCCccceeeee----e----ccccccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence            999977543210    0    0000000111112345678899999831  2   235567777777777764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.20  E-value=9e-07  Score=74.25  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..||+|||||++|+.+|..|++.|.++++++..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            3589999999999999999999998887777644

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.16  E-value=6.8e-07  Score=84.16  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      |..+|||||||+|+||+.+|.+|++.|++|+|+|+....
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            345799999999999999999999999999999995543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=6.5e-06  Score=70.70  Aligned_cols=58  Identities=22%  Similarity=0.355  Sum_probs=43.1

Q ss_pred             CCCCCccCCceEecchhhhccc------------CCCCeeEEEcccHHHHHHHHHHH--------------------HcC
Q 011787          190 SLPGITIDEKRIVSSTGALALN------------EVPKKLVVIGAGYIGLEMGSVWA--------------------RLG  237 (477)
Q Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~------------~~~~~v~IiG~G~~g~e~a~~l~--------------------~~g  237 (477)
                      .+||.  +...+++..++..+.            ..+++|+|||+|.+|+++|..+.                    +.|
T Consensus         5 ~IPGe--dl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~   82 (216)
T d1lqta1           5 NIPGE--DLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG   82 (216)
T ss_dssp             CCTTT--TSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC
T ss_pred             CCCCC--CCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcC
Confidence            46764  455688877776421            23789999999999999998876                    445


Q ss_pred             C-cEEEEEeCCCc
Q 011787          238 S-EVTVVEFAADI  249 (477)
Q Consensus       238 ~-~Vtli~~~~~~  249 (477)
                      . +|+++.|+...
T Consensus        83 ~~~V~iv~RRg~~   95 (216)
T d1lqta1          83 IQEVVIVGRRGPL   95 (216)
T ss_dssp             CCEEEEECSSCGG
T ss_pred             CceEEEEEECChH
Confidence            4 69999988754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.07  E-value=7.4e-06  Score=72.73  Aligned_cols=117  Identities=14%  Similarity=0.159  Sum_probs=71.4

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--------------------------------------CCCH-
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--------------------------------------SMDG-  255 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------------------------------------~~~~-  255 (477)
                      -.++|||+|+.|+++|..++++|.+|+++++.+.+..                                      ..+. 
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  122 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHH
Confidence            3599999999999999999999999999998765411                                      0110 


Q ss_pred             HHHHH------------HHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCc
Q 011787          256 EIRKQ------------FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL  323 (477)
Q Consensus       256 ~~~~~------------~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~  323 (477)
                      .....            ..+.+...++....+....-+  ++..  +..      ++++++||.|++|+|.+|++..+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--d~~~--v~~------~g~~i~ad~viiAtG~~P~~~~i~~  192 (261)
T d1mo9a1         123 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVI--DNHT--VEA------AGKVFKAKNLILAVGAGPGTLDVPE  192 (261)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEE--ETTE--EEE------TTEEEEBSCEEECCCEECCCCCSTC
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEe--eecc--ccc------ccceEeeeeeeeccCCCCCcCcccc
Confidence            01100            111223333333333322211  1111  222      5679999999999999999987655


Q ss_pred             cccceeecCCCCeecCCC
Q 011787          324 DKIGVETDKMGRIPVNER  341 (477)
Q Consensus       324 ~~~gl~~~~~g~i~vd~~  341 (477)
                      +...+++++.-++.+|+.
T Consensus       193 ~~~~~~l~~~~Gl~~~~~  210 (261)
T d1mo9a1         193 QPRSAELAKILGLDLGPK  210 (261)
T ss_dssp             EECCHHHHHHHTCCBCTT
T ss_pred             cccccccccceeeeeccC
Confidence            544444444334666654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.07  E-value=3.4e-05  Score=62.33  Aligned_cols=35  Identities=20%  Similarity=0.032  Sum_probs=30.0

Q ss_pred             CCcEEEE--CCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           43 ENDVVVI--GGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvII--GgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ...++|+  |||+.|+.+|..|+++|.+|+||++.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            3456665  9999999999999999999999998543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.96  E-value=2.2e-06  Score=79.78  Aligned_cols=37  Identities=35%  Similarity=0.554  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHH-----HCCCeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAA-----QLGLKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~-----~~g~~V~lie~~~~~   78 (477)
                      ..|||+||||||+|+++|..|+     +.|++|+|+||.+.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            3599999999999999999996     469999999997654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=5.2e-05  Score=64.71  Aligned_cols=95  Identities=20%  Similarity=0.320  Sum_probs=65.9

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC-Cc--C---C----CC--------C------HHHHHHHHHHHHh-cCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-DI--V---P----SM--------D------GEIRKQFQRSLEK-QKM  270 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~-~~--~---~----~~--------~------~~~~~~~~~~l~~-~gv  270 (477)
                      .|+|||||+.|+|.|...++.|.++.+++.+. .+  +   |    ..        +      ......+++.+++ .++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999999999998642 11  0   0    00        0      1122334444443 378


Q ss_pred             EEEeCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 011787          271 KFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP  316 (477)
Q Consensus       271 ~~~~~~~v~~i~~~~~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p  316 (477)
                      .++ ..+|.++..+++.+. +.+.     ++.++.+..||+++|.-.
T Consensus        84 ~i~-q~~V~dli~e~~~v~gV~t~-----~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          84 HLF-QATATGLLLEGNRVVGVRTW-----EGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             EEE-ECCEEEEEEETTEEEEEEET-----TSCCEECSEEEECCTTCS
T ss_pred             HHH-hccceeeEecccceeeEEec-----cccEEEEeEEEEccCcce
Confidence            877 456777766666665 5554     667899999999999543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.92  E-value=2.4e-05  Score=70.47  Aligned_cols=103  Identities=21%  Similarity=0.328  Sum_probs=73.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC--C-----CCC---------------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-----SMD---------------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~--~-----~~~---------------------------------  254 (477)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+...  +     .+.                                 
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            379999999999999999999999999999876321  0     011                                 


Q ss_pred             --------------------HHHHHHHHHHHHhcCcEEEeCceEEE-EEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 011787          255 --------------------GEIRKQFQRSLEKQKMKFMLKTKVVG-VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       255 --------------------~~~~~~~~~~l~~~gv~~~~~~~v~~-i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                                          ..+.+.+.+.+++.+..+........ +..+++.+.+++..  +++..++.+|+||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~g~~~~i~a~~vVgADG  160 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER--DGERLRLDCDYIAGCDG  160 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE--TTEEEEEECSEEEECCC
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEec--CCcEEEEEeCEEEECCC
Confidence                                23455556666667776776665544 44455666676653  33445789999999999


Q ss_pred             CCCCCC
Q 011787          314 RTPFTA  319 (477)
Q Consensus       314 ~~p~~~  319 (477)
                      .+...-
T Consensus       161 ~~S~vR  166 (292)
T d1k0ia1         161 FHGISR  166 (292)
T ss_dssp             TTCSTG
T ss_pred             CCCccc
Confidence            887543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=2.3e-05  Score=68.92  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            4899999999999999999999999999997643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=9.7e-06  Score=70.41  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=64.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCcCC----------CCCHHHHHHHHHHHHhcCcEEEeCceEEEEEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP----------SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL  283 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~~~----------~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  283 (477)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+..          .....+.......+++.|++++.++.|..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            799999999999999999775  679999999987631          12234556667778888999998876521   


Q ss_pred             cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       284 ~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                        + +.  +      ....-.+|.+++|+|..+...
T Consensus        80 --~-~~--~------~~l~~~~d~v~~a~Ga~~~~~  104 (230)
T d1cjca2          80 --D-VT--V------QELQDAYHAVVLSYGAEDKSR  104 (230)
T ss_dssp             --T-BC--H------HHHHHHSSEEEECCCCCEECC
T ss_pred             --c-cc--H------HHHHhhhceEEEEeecccccc
Confidence              1 10  0      001124799999999876544

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=3.6e-05  Score=62.62  Aligned_cols=44  Identities=20%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             HHhhhCCeEEEEe-EEEEecCCEEEEEecCCceEEEEecEEEEccC
Q 011787          141 GLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATG  185 (477)
Q Consensus       141 ~~~~~~~v~~~~~-~~~~~~~~~~~v~~~~g~~~~i~~d~lvlAtG  185 (477)
                      ..++..+++++.+ .+..++.+.+.+.. +|..+.+.+|.||+|+|
T Consensus       116 ~~~~~~gv~~~~~~~v~~i~~~gv~~~~-~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         116 TTLLSRGVKMIPGVSYQKIDDDGLHVVI-NGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHTTCEEECSCEEEEEETTEEEEEE-TTEEEEECCSEEEECCC
T ss_pred             HHHhhCCeEEEeeeEEEEEcCCCCEEec-CCeEEEEECCEEEECCC
Confidence            4566778988876 45667888777654 45567799999999999

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.81  E-value=8.4e-05  Score=64.25  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=45.3

Q ss_pred             CCCCCCccCCceEecchhhh-c-ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          189 KSLPGITIDEKRIVSSTGAL-A-LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       189 ~~~~g~~~~~~~~~~~~~~~-~-~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +.+||.+.....++++.+.. . ....+|+|+|||+|.+|+++|..+++.+.+++++.+.+..
T Consensus         5 P~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2           5 PNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccce
Confidence            35677764444555555442 2 2345899999999999999999999999999888777643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.75  E-value=8.3e-06  Score=76.39  Aligned_cols=34  Identities=41%  Similarity=0.609  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .++||||||+|++|+.+|.+|++.|++|+|+|+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999999999999999999999999999984

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.70  E-value=1.3e-05  Score=74.72  Aligned_cols=34  Identities=35%  Similarity=0.702  Sum_probs=32.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .||+||||+|+||+.+|.+|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5999999999999999999999999999999953

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.69  E-value=9.5e-05  Score=63.31  Aligned_cols=96  Identities=20%  Similarity=0.327  Sum_probs=64.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCC-------------------------------------CC----
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------------MD----  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~-------------------------------------~~----  254 (477)
                      .++|||+|+.|+++|..+++.|.+|+++++.+.+...                                     ..    
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM   84 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence            5899999999999999999999999999987654210                                     00    


Q ss_pred             --------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 --------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 --------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                              ..+.+.+...++..+++++...... .  .+.......   .......+.+|.||+|||.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~--~~~~~~~~~---~~~~~~~~~a~~VIiATGs~~~  149 (221)
T d1dxla1          85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SPSEISVDT---IEGENTVVKGKHIIIATGSDVK  149 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ETTEEEECC---SSSCCEEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhhHHHHhhhcCCeEEEEecccc-c--ccccccccc---ccccccccccceEEEeECCCcc
Confidence                    1123334456667788877543221 1  122222211   2235678999999999998874

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.68  E-value=1.6e-05  Score=74.33  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      .||||||+|++|+.+|.+|++.|++|+|+|+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            589999999999999999999999999999953

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.6e-05  Score=72.44  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=32.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~~~  249 (477)
                      ...|+|||+|+.|+.+|..|++.  |.+|+++++++.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            56799999999999999999865  8999999998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.61  E-value=7.7e-06  Score=71.25  Aligned_cols=145  Identities=21%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCC-----------HHHHHHHHHHHHhcCcEEEeCceEEE
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-----------GEIRKQFQRSLEKQKMKFMLKTKVVG  280 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~-----------~~~~~~~~~~l~~~gv~~~~~~~v~~  280 (477)
                      ..+++|+|||||+.|+.+|..|+++|.+|+++++.+.+...+.           ..........+.+.+..... .   .
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~  122 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE-S---Q  122 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT-C---E
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee-e---e
Confidence            4579999999999999999999999999999999887743111           11222223333322111110 0   0


Q ss_pred             EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCccccceeecCCCCeecCCCCCCCCCCeEEecccCCCCC
Q 011787          281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM  360 (477)
Q Consensus       281 i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~vya~GD~~~~~~  360 (477)
                      +......  +..     .+..++.+|.+|+|+|..+.........      .. ....    .....+++..++. +.+-
T Consensus       123 ~~~~~~~--~~~-----~~~~~~~~d~vviAtG~~~~~~~~~~~~------~~-~~~~----~~~~~~~~~~~~~-~~~v  183 (233)
T d1djqa3         123 LALGQKP--MTA-----DDVLQYGADKVIIATGASECTLWNELKA------RE-SEWA----ENDIKGIYLIGDA-EAPR  183 (233)
T ss_dssp             EECSCCC--CCH-----HHHHTSCCSEEEECCCEECCHHHHHHHH------TT-HHHH----HTTCCEEEECGGG-TSCC
T ss_pred             eeccccc--ccc-----hhhhhhccceeeeccCCCcccccccccc------cc-cccc----hhhhhhhhhcccc-CCce
Confidence            1111111  110     1234567999999999887553211110      00 0111    1234566666654 3344


Q ss_pred             chhHHHHHHHHHHHHHcCC
Q 011787          361 LAHKAEEDGVACVEFLAGK  379 (477)
Q Consensus       361 ~~~~A~~~g~~aa~~i~~~  379 (477)
                      ....+-..|..+|..+...
T Consensus       184 vViGgG~~g~e~A~~l~~~  202 (233)
T d1djqa3         184 LIADATFTGHRVAREIEEA  202 (233)
T ss_dssp             CHHHHHHHHHHHHHTTTSS
T ss_pred             eEecCchHHHHHHHHHHhc
Confidence            5666777787788877643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00029  Score=59.96  Aligned_cols=93  Identities=17%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-------------------------------------CCC----
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------------------------------------SMD----  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-------------------------------------~~~----  254 (477)
                      .++|||+|+.|+++|..+++.|.+|.++++.. +..                                     .++    
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            48999999999999999999999999999753 110                                     000    


Q ss_pred             --------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          255 --------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       255 --------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                              ..+...++..+++.||++.........   ...  ...      ++..+.++.+++|+|.+|....
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~--~~~------~~~~~~~~~~iiatG~~p~ip~  145 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKT--LEV------NGETITADHILIATGGRPSHPR  145 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTE--EEE------TTEEEEEEEEEECCCEEECCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eee--ecC------CCceeeeeeeeeecCccccCCC
Confidence                    012223344567778887765443322   111  111      5578999999999999987754

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.53  E-value=0.0021  Score=58.97  Aligned_cols=33  Identities=36%  Similarity=0.446  Sum_probs=27.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHH----cCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~----~g~~Vtli~~~~  247 (477)
                      -.|+|||+|..|+-.|..+++    .|.+|.++++.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            469999999999998888764    688999999754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=8.6e-06  Score=71.05  Aligned_cols=92  Identities=18%  Similarity=0.250  Sum_probs=66.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcC-------CcEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhcCcEEEeCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLG-------SEVTVVEFAADIV--------P--SMDGEIRKQFQRSLEKQKMKFMLKT  276 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g-------~~Vtli~~~~~~~--------~--~~~~~~~~~~~~~l~~~gv~~~~~~  276 (477)
                      |.+|+|||+|++|+.+|..|++.|       .+|+++++.+.+.        |  .....+.+.....+...|++++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            678999999999999999999987       4799999988663        2  1234556666777888899999887


Q ss_pred             eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       277 ~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                      .+...      ..+        +.....+|.+++|+|..+...
T Consensus        82 ~v~~~------~~~--------~~~~~~~~~v~~atGa~~~~~  110 (239)
T d1lqta2          82 VVGEH------VQP--------GELSERYDAVIYAVGAQSRGV  110 (239)
T ss_dssp             CBTTT------BCH--------HHHHHHSSEEEECCCCCEECC
T ss_pred             Eeccc------cch--------hhhhccccceeeecCCCcccc
Confidence            65210      000        112245899999999876543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.50  E-value=0.0005  Score=58.62  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      ...++|||+|+.|+++|..+++.|.+|+++++.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            357999999999999999999999999999865

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.00058  Score=58.79  Aligned_cols=99  Identities=21%  Similarity=0.337  Sum_probs=67.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--------------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--------------------------------------------  251 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--------------------------------------------  251 (477)
                      .++|||+|+.|+.+|..+++.|.+|.++++.+....                                            
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            589999999999999999999999999996543210                                            


Q ss_pred             -CCC------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          252 -SMD------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       252 -~~~------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                       ..+            ..+.+.+...+++.+|.++.+.....   .++...+..   ..+....+.++.+++++|.+|..
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~---~~~~~~v~~---~~~~~~~i~a~~ivi~~G~~p~~  158 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFI---GPHKIMATN---NKGKEKVYSAERFLIATGERPRY  158 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEE---ETTEEEEEC---TTSCEEEEEEEEEEECCCEEECC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeec---cccceeccc---ccccccccccccceeecCCCcee
Confidence             011            01222344566778999886654321   233444432   23455679999999999999976


Q ss_pred             CC
Q 011787          319 AG  320 (477)
Q Consensus       319 ~~  320 (477)
                      ..
T Consensus       159 ~~  160 (235)
T d1h6va1         159 LG  160 (235)
T ss_dssp             CS
T ss_pred             EE
Confidence            54

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.45  E-value=4.7e-05  Score=71.66  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~   76 (477)
                      +.||+||||||+||+.+|.+|.+.+ .+|+|+|+..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4599999999999999999999987 7999999964

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.44  E-value=0.00056  Score=54.48  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=29.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ..+|+|||||-.|+-+|..|.+.|. +|+++.++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            4579999999999999999999986 58899874

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.37  E-value=4.9e-05  Score=71.38  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~   76 (477)
                      +.||+||||||+||+..|.+|.+.+ .+|+|+|+..
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            3599999999999999999999875 8999999964

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=0.00058  Score=58.83  Aligned_cols=104  Identities=24%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC---CcEEEEEeCCCc--------------------------CC-----------CCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADI--------------------------VP-----------SMD  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g---~~Vtli~~~~~~--------------------------~~-----------~~~  254 (477)
                      .+|+|||+|+.|+.+|...++.+   .+|+++++...-                          .+           .++
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d   81 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS   81 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceee
Confidence            37999999999999998887766   468899864310                          00           011


Q ss_pred             H------------HHHHHHHHHHHhcCcEEEeCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 011787          255 G------------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG  320 (477)
Q Consensus       255 ~------------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  320 (477)
                      .            .....+...++..||+++.+.... +....  ....+.+. ..+++..++++|.+++++|.+|+...
T Consensus        82 ~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~-~~dg~~~~i~ad~viiAtG~~p~~~~  159 (233)
T d1xdia1          82 LPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKAT-AADGSTSEHEADVVLVATGASPRILP  159 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEE-CTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             eeeeccccceeeeeeecceehhhcccceeEEECcccc-cccccccccceEEEE-ecCCceeeeecceeeeecCccccccc
Confidence            0            111234556778899998764322 11111  11223322 23456678999999999999998753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.33  E-value=4.5e-05  Score=70.62  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..||+||||||+||+.+|.+|++. .+|+|+|+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG   57 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERG   57 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSS
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecC
Confidence            459999999999999999999986 999999995

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.33  E-value=1.3e-05  Score=69.95  Aligned_cols=31  Identities=26%  Similarity=0.123  Sum_probs=26.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|+|||||++|+++|++|+++|.+|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            4699999999999999999999876555544

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.31  E-value=0.00051  Score=58.69  Aligned_cols=98  Identities=19%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC--CCC---------------------------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--SMD---------------------------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~--~~~---------------------------------------  254 (477)
                      .++|||+|+.|+.+|..+++.|.+|.++++......  .+.                                       
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            489999999999999999999999999987542210  000                                       


Q ss_pred             --------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          255 --------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       255 --------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                                    ..+...+...++..||+++.+.....   .........   ...+...+.++.+++++|.+|...
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~---~~~~~~~~~---~~~~~~~~~~~~~i~atG~~~~~~  157 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL---AGKKVEVTA---ADGSSQVLDTENVILASGSKPVEI  157 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC---STTCEEEEC---TTSCEEEECCSCEEECCCEEECCC
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc---ccceeeccc---cCccceeeecccccccCCcccccc
Confidence                          01223345566778898886644331   122222221   223556788999999999998764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.19  E-value=0.0031  Score=55.64  Aligned_cols=104  Identities=17%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             CCeeEEEcccHHHHHHHHHHHH-cCCcEEEEEeCCCcCC-------CCC-------------------------------
Q 011787          214 PKKLVVIGAGYIGLEMGSVWAR-LGSEVTVVEFAADIVP-------SMD-------------------------------  254 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~-~g~~Vtli~~~~~~~~-------~~~-------------------------------  254 (477)
                      ...|+|||+|+.|+.+|..|++ .|.+|+++++++.+..       .++                               
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  112 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence            4579999999999999999987 5999999999875421       000                               


Q ss_pred             -HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEe----------ecCCCceEEEEcCEEEEeecCCCC
Q 011787          255 -GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE----------PAAGGEKTILEADVVLVSAGRTPF  317 (477)
Q Consensus       255 -~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~----------~~~~~~~~~i~~D~vi~a~G~~p~  317 (477)
                       ..+...+.+.++..++.+..++.+..+...++++.-...          .....+...+.++.++.++|....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence             122333445556678888888888887776665542211          011224568999999999996543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.0023  Score=54.22  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc-----------------------------------CCCCCH----
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------------------------------VPSMDG----  255 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~-----------------------------------~~~~~~----  255 (477)
                      ..++|||+|+.|+++|..+++.|.+|+++++...-                                   ...++.    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            45899999999999999999999999999875410                                   001111    


Q ss_pred             --------HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 011787          256 --------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT  318 (477)
Q Consensus       256 --------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~  318 (477)
                              .+...+...++..+|+++.+..  .+. .+....+...    .+...+.+|.+++++|..|..
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~-~~~~~~v~~~----~~~~~~~~~~iiIa~g~~p~~  147 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFV-DANTVRVVNG----DSAQTYTFKNAIIATGSRPIE  147 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEE-ETTEEEEEET----TEEEEEECSEEEECCCEEECC
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEc-cCcccceecc----ccceEEecccEEEEcCCCccc
Confidence                    1223334556778999887642  122 2333333332    256789999999999998854

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.002  Score=54.59  Aligned_cols=95  Identities=22%  Similarity=0.288  Sum_probs=64.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC------------------------------c-C----CCCCH-----
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD------------------------------I-V----PSMDG-----  255 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~------------------------------~-~----~~~~~-----  255 (477)
                      .++|||+|+.|+++|..+++.|.+|.++++...                              . .    +.++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            489999999999999999999999999986531                              0 0    01111     


Q ss_pred             -------HHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 011787          256 -------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA  319 (477)
Q Consensus       256 -------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  319 (477)
                             .+.....+.+++.||+++.+.-...   .........      ....+.++.+++++|.+|...
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~---~~~~~~~~~------~~~~~~~~~~~iatG~~p~vp  146 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT---SDPKPTIEV------SGKKYTAPHILIATGGMPSTP  146 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC---SCSSCEEEE------TTEEEECSCEEECCCEEECCC
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeec---cccceeeee------eccccccceeEEecCccccCC
Confidence                   1222334567788999886643221   122222222      346889999999999999765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.89  E-value=0.00037  Score=63.62  Aligned_cols=40  Identities=38%  Similarity=0.542  Sum_probs=36.2

Q ss_pred             ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       210 ~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      -...||+|+|||+|++|+.+|..|++.|.+|+++++++++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3456899999999999999999999999999999988765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.011  Score=44.93  Aligned_cols=36  Identities=36%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ...+|+|||||.+.+-.|..|.+...+|+|+-+.+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            357999999999999999999999889999987543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.81  E-value=0.00043  Score=62.34  Aligned_cols=36  Identities=36%  Similarity=0.426  Sum_probs=33.8

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +|+|+|||+|+.|+.+|..|++.|.+|+++++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            589999999999999999999999999999998765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00087  Score=48.33  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..+|+|+|.|-+|+++|..|.+.|.+|+++|.+.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            4679999999999999999999999999999854

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.022  Score=43.18  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=31.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA   77 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~   77 (477)
                      ..+|+|||||-+++-.|..|.+...+|+++-|.+.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            57999999999999999999999999999988543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.54  E-value=0.001  Score=54.39  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .++|+|||+|..|..+|.+|.+.|++|+|+||+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            368999999999999999999999999999984

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.47  E-value=0.0017  Score=51.63  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||+|.+|+.|+..+++.|.+|+++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            368999999999999999999999999999983

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.46  E-value=0.0012  Score=59.70  Aligned_cols=37  Identities=30%  Similarity=0.587  Sum_probs=34.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      .|+|+|||||++|+-+|..|++.|.+|+++++++++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            4789999999999999999999999999999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.42  E-value=0.0019  Score=52.18  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..+|+|||+|.+|+.||..+.+.|..|+++|.+
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~   61 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVR   61 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEecc
Confidence            368999999999999999999999999999984

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.41  E-value=0.0015  Score=53.62  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +++.|||+|..|++.|..|++.|++|.+++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999999999999999999983

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.34  E-value=0.028  Score=42.79  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL   78 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~   78 (477)
                      ...+|+|||||-+++-.|..|.+.-.+|+||-|++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            4689999999999999999999999999999886543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0016  Score=59.44  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=33.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            467999999999999999999999999999998876

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.30  E-value=0.011  Score=54.28  Aligned_cols=31  Identities=29%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      .++|||+|..|+-+|..|++.|.+|.++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999985

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.23  E-value=0.0016  Score=58.18  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=32.1

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      +|+|||+|+.|+.+|..|++.|.+|+++++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            5899999999999999999999999999998776

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.22  E-value=0.0025  Score=49.19  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|+|+|+|.-|...|..|.+.|++|+++|++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            47999999999999999999999999999984

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.19  E-value=0.0018  Score=56.65  Aligned_cols=35  Identities=23%  Similarity=0.481  Sum_probs=31.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCCCcC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIV  250 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~~~~  250 (477)
                      +|+|||||++|+.+|..|++.|. +|+++++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            49999999999999999999995 799999988763

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.17  E-value=0.0021  Score=55.76  Aligned_cols=34  Identities=35%  Similarity=0.566  Sum_probs=31.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0037  Score=50.26  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ++|+|||+|.-|...|..|.+.|++|++++|++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence            479999999999999999999999999999854

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.94  E-value=0.097  Score=43.87  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..++|+|||+|..|+-+|..|++.+.+++++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999998888876643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0026  Score=56.81  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=32.9

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      .++|||||++|+-+|..|++.|.+|+++++++++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            58999999999999999999999999999998874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.68  E-value=0.0049  Score=47.55  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++++|||.|..|...|..|.+.|.+|+++|++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            36899999999999999999999999999984

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.61  E-value=0.017  Score=42.35  Aligned_cols=34  Identities=12%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ..++|+|||+|.+|+-.|..|++...+++++.++
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            3579999999999999999999988887777653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0038  Score=49.35  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ...+++|||||..|+.-|..|.+.|.+|+||.+
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            457899999999999999999999999999976

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.56  E-value=0.052  Score=45.35  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             CCCcEEEECCChHHHHHHHHHH--------------------HCCC-eEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAA--------------------QLGL-KTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~--------------------~~g~-~V~lie~~~   76 (477)
                      ...+|+|||+|-.++=+|..|.                    +.|. +|.++-|+.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            3478999999999999998876                    4564 699998853

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.51  E-value=0.0071  Score=45.05  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ...+|+|||+|..|..-|..|.+.|.+|+++++
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            357899999999999999999999999999987

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0056  Score=55.67  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=31.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .|+|||+|.+|+-+|..|++.|.+|+++++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            3899999999999999999999999999988765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.42  E-value=0.017  Score=42.93  Aligned_cols=33  Identities=15%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEe
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEF  245 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~  245 (477)
                      .+++++|||+|.+|..-|..|.+.|.+|+++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            379999999999999999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0069  Score=47.74  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=31.7

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      -.+++++|||||.+|.+-+..|.+.|.+|+++...
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34799999999999999999999999999999643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.27  E-value=0.007  Score=52.38  Aligned_cols=35  Identities=37%  Similarity=0.533  Sum_probs=32.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..|+|||+|++|+-+|..+++.|.+|+++++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46999999999999999999999999999998754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.27  E-value=0.007  Score=52.11  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .|+|||+|++|+.+|..|++.|.+|+++++++.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            5899999999999999999999999999988754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.26  E-value=0.011  Score=46.67  Aligned_cols=38  Identities=21%  Similarity=0.151  Sum_probs=32.4

Q ss_pred             CCCCCCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           38 ASASDENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        38 ~~~~~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      +++..+.+|.|||+|..|.++|+.|...+. +++|+|.+
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence            356677899999999999999998888774 89999974

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.24  E-value=0.009  Score=50.75  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4899999999999999999999999999987653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.24  E-value=0.0081  Score=46.97  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCC--CeEEEEecC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKR   75 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~   75 (477)
                      |..+.+|.|||+|..|.++|..|+..+  .++.|+|.+
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            445679999999999999999999987  589999973

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.17  E-value=0.006  Score=50.19  Aligned_cols=36  Identities=19%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        40 ~~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++.+.+|+|||+|.-|.+.|..|++.|.+|+|+.++
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            344568999999999999999999999999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.16  E-value=0.0077  Score=52.68  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999865

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.12  E-value=0.057  Score=49.08  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=29.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .++|||+|..|+-+|..|++.|.+|.++++.+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            58999999999999999999999999999873

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.08  E-value=0.0097  Score=49.50  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|||.|..|+..|..|++.|++|+.+|.+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            46999999999999999999999999999984

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.013  Score=41.69  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      .+|+++|+|.|.+|+.+|..|.+.|.+|++++.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            478999999999999999999999999999987653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.016  Score=43.43  Aligned_cols=39  Identities=18%  Similarity=0.405  Sum_probs=32.7

Q ss_pred             CCCCCCCcEEEECCCh-----------HHHHHHHHHHHCCCeEEEEecCC
Q 011787           38 ASASDENDVVVIGGGP-----------GGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        38 ~~~~~~~dvvIIGgG~-----------AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      |..+...+|+|||+||           ++..|+..|++.|++++++..++
T Consensus         2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            3345567899999996           78899999999999999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.011  Score=50.06  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++|||+|+.|+.+|..+++.|.+|.++++.+.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            5899999999999999999999999999987664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.016  Score=47.63  Aligned_cols=32  Identities=34%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .+|.|||+|.-|...|..+++.|++|+++|++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   36 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            58999999999999999999999999999984

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.82  E-value=0.02  Score=45.00  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             CCCCCCcEEEEC-CChHHHHHHHHHHHCCCeEEEEecC
Q 011787           39 SASDENDVVVIG-GGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        39 ~~~~~~dvvIIG-gG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++....+|.||| .|.-|.+.|..|++.|++|.++|++
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~   42 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE   42 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccc
Confidence            344567999999 6999999999999999999999984

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.81  E-value=0.068  Score=45.25  Aligned_cols=32  Identities=47%  Similarity=0.578  Sum_probs=27.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~  247 (477)
                      .++|||+|+.|+.+|..+++.|. .|.+++...
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            58999999999999999999884 688887654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.67  E-value=0.011  Score=47.85  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .|+|+|+|+|.+|..+|..|.+.|.+|+++.|+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            4899999999999999999999999999999874

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.60  E-value=0.019  Score=53.99  Aligned_cols=45  Identities=24%  Similarity=0.412  Sum_probs=40.9

Q ss_pred             CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCCCCCceeecc
Q 011787           41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV   85 (477)
Q Consensus        41 ~~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   85 (477)
                      ...+||||+|-|..=.-.|..|.+.|.+|+=+|+++.-||.|...
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl   48 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF   48 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccce
Confidence            356999999999999999999999999999999999999987543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.48  E-value=0.014  Score=52.93  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CeeEEEcccHHHHHHHHHHH-----HcCCcEEEEEeCCCcC
Q 011787          215 KKLVVIGAGYIGLEMGSVWA-----RLGSEVTVVEFAADIV  250 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~-----~~g~~Vtli~~~~~~~  250 (477)
                      -.|+|||||++|+-+|..|+     +.|.+|+++++.+.+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            36999999999999999996     5699999999987663

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.48  E-value=0.016  Score=50.68  Aligned_cols=33  Identities=27%  Similarity=0.512  Sum_probs=30.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            589999999999999999999999999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.0085  Score=49.39  Aligned_cols=35  Identities=34%  Similarity=0.532  Sum_probs=32.0

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      -++|.|||+|..|..+|..++..|.+|+++++++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            47999999999999999999999999999987653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.42  E-value=0.016  Score=47.41  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .+|.|||+|..|...|..+++.|++|+++|++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            57999999999999999999999999999984

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.40  E-value=0.015  Score=51.65  Aligned_cols=32  Identities=28%  Similarity=0.574  Sum_probs=29.4

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~  247 (477)
                      +|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            59999999999999999999995 799999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.041  Score=40.47  Aligned_cols=35  Identities=23%  Similarity=0.487  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ..++|.|||||.=|...|..+++.|+++.++|+++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            44689999999999999999999999999999854

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.03  E-value=0.018  Score=46.73  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      |++.|||+|..|.-+|..|++.|.+|+++.|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999999999999999999999998753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.02  E-value=0.054  Score=42.66  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~   75 (477)
                      .+.+|.|||+|..|.++|+.|...|.  ++.|+|.+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            45799999999999999999999985  89999973

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.00  E-value=0.01  Score=48.57  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      -++|.|||+|..|..+|..++..|.+|+++++++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            47899999999999999999999999999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.94  E-value=0.022  Score=46.29  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|.|||+|.-|.+.|..|.+.|.+|.|+.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            4799999999999999999999999999976

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.92  E-value=0.03  Score=44.64  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=29.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|||.|.-|.+.|..|++.|++|+++|++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            36999999999999999999999999999983

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.72  E-value=0.077  Score=40.28  Aligned_cols=31  Identities=13%  Similarity=0.516  Sum_probs=29.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      +|+|+|+|..|..++..|.+.|.+|++++.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            5899999999999999999999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.031  Score=44.41  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            689999999999999999999999999988653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.0052  Score=45.57  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             CCeeEEEcccH-----------HHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          214 PKKLVVIGAGY-----------IGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       214 ~~~v~IiG~G~-----------~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++++|+|+|+           .++.++..|++.|.++.++..++.-
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            47899999984           6778889999999999999887754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.072  Score=39.24  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCh-----------HHHHHHHHHHHCCCeEEEEecCC
Q 011787           42 DENDVVVIGGGP-----------GGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~-----------AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      ...+|+|||+||           ++..|+..|++.|++++++..++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            346899999995           78899999999999999998754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.29  E-value=0.033  Score=49.37  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----------CC----------C--------------------
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------SM----------D--------------------  254 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----------~~----------~--------------------  254 (477)
                      .|+|||+|..|+-+|..+++.|.+|.++++.+....           ..          +                    
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   97 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA   97 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence            699999999999999999999999999998764310           00          0                    


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCC-
Q 011787          255 -----------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-  286 (477)
Q Consensus       255 -----------------------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-  286 (477)
                                                                     ..+...+.+.+++.|++++++++++++..+++ 
T Consensus        98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G  177 (308)
T d1y0pa2          98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG  177 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence                                                           11223334556678999999999999876554 


Q ss_pred             eEE-EEEeecCCCceEEEEcCEEEEeec
Q 011787          287 GVK-LTLEPAAGGEKTILEADVVLVSAG  313 (477)
Q Consensus       287 ~~~-v~~~~~~~~~~~~i~~D~vi~a~G  313 (477)
                      .+. +.+.+. .+....+.++.||+|+|
T Consensus       178 ~V~Gv~~~~~-~~~~~~i~Ak~VVlAtG  204 (308)
T d1y0pa2         178 TVKGILVKGM-YKGYYWVKADAVILATG  204 (308)
T ss_dssp             CEEEEEEEET-TTEEEEEECSEEEECCC
T ss_pred             cccccccccc-ccceeEeecCeEEEccC
Confidence            554 555432 23346799999999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.052  Score=43.40  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ..+|+|+|+|-|+-+++..|.+.|.+|+|+.|
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nR   49 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNR   49 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence            46899999999999999999999999999988

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.82  E-value=0.017  Score=44.77  Aligned_cols=80  Identities=11%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHcCC--cEEEEEeCCCcC--CCCCHHHHHHHHHHHHhcCcEEEeCc--eEEEEEEcCCeEEEEEeecCCC
Q 011787          225 IGLEMGSVWARLGS--EVTVVEFAADIV--PSMDGEIRKQFQRSLEKQKMKFMLKT--KVVGVDLSGDGVKLTLEPAAGG  298 (477)
Q Consensus       225 ~g~e~a~~l~~~g~--~Vtli~~~~~~~--~~~~~~~~~~~~~~l~~~gv~~~~~~--~v~~i~~~~~~~~v~~~~~~~~  298 (477)
                      .++-++..|++.|.  ++.++...+...  +.+.+...+.+.+.++++||+++.+.  .+.+++.....  +++.     
T Consensus        54 ~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~--~~~~-----  126 (141)
T d1fcda2          54 RASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMM--VETA-----  126 (141)
T ss_dssp             HHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTE--EEET-----
T ss_pred             HHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEE--EEeC-----
Confidence            34455566777775  577766554321  11223455666777788999999876  46666555443  3333     


Q ss_pred             ceEEEEcCEEEEe
Q 011787          299 EKTILEADVVLVS  311 (477)
Q Consensus       299 ~~~~i~~D~vi~a  311 (477)
                      +++++++|++.+.
T Consensus       127 ~Ge~v~yD~l~vv  139 (141)
T d1fcda2         127 FGDEFKADVINLI  139 (141)
T ss_dssp             TCCEEECSEEEEC
T ss_pred             CCcEEeeeEEEeC
Confidence            6679999998863

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.77  E-value=0.06  Score=41.89  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=29.2

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~   74 (477)
                      ...+|.|||+|..|.++|+.|...+.  ++.|+|.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di   39 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA   39 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee
Confidence            34689999999999999999998764  7999997

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.64  E-value=0.045  Score=50.18  Aligned_cols=161  Identities=20%  Similarity=0.203  Sum_probs=101.9

Q ss_pred             CeeEEEcccHHHHHHHHHHHH------cCCcEEEEEeCCCcCCC------CC----------------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWAR------LGSEVTVVEFAADIVPS------MD----------------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~------~g~~Vtli~~~~~~~~~------~~----------------------------  254 (477)
                      -.|+|||||+.|+-+|..|++      .|.+|.++++...+...      ++                            
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~  112 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  112 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEE
Confidence            369999999999999999987      79999999998765210      11                            


Q ss_pred             ----------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcCCeEEEEEee-----cCCC---
Q 011787          255 ----------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEP-----AAGG---  298 (477)
Q Consensus       255 ----------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~-----~~~~---  298 (477)
                                                  .....++.+..+..|+.+..+..+.++..+++++......     ....   
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  192 (380)
T d2gmha1         113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  192 (380)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             EeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccccccccccc
Confidence                                        3455666777788899999999999987766543322110     0000   


Q ss_pred             ----ceEEEEcCEEEEeecCCCCCCCCCcccccee--ecCCCCeecCCCCCCCCCCeEEecccCCCC-----CchhHHHH
Q 011787          299 ----EKTILEADVVLVSAGRTPFTAGLGLDKIGVE--TDKMGRIPVNERFATNIPGVYAIGDVIPGP-----MLAHKAEE  367 (477)
Q Consensus       299 ----~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~--~~~~g~i~vd~~l~t~~~~vya~GD~~~~~-----~~~~~A~~  367 (477)
                          ......++..+++.|.+.......++...+.  ....+++.  ..-+...+++..+||+++.-     .-.+.|+.
T Consensus       193 ~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~  270 (380)
T d2gmha1         193 TTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMK  270 (380)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHH
T ss_pred             ccccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc--cccccccCCeeEEeccccccchhhcCCeeeeec
Confidence                1234567788888886543311001111000  01111111  01123568999999999742     24678999


Q ss_pred             HHHHHHHHHc
Q 011787          368 DGVACVEFLA  377 (477)
Q Consensus       368 ~g~~aa~~i~  377 (477)
                      .|+.||+.+.
T Consensus       271 SG~lAAeai~  280 (380)
T d2gmha1         271 SGTLAAESIF  280 (380)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999999885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.52  E-value=0.046  Score=41.69  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=29.7

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      |+++|+|.|..|..+|..|.+.|.+|++++.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            57899999999999999999999999999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.50  E-value=0.058  Score=49.03  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      .|+|||+|..|.-+|..|++.|.+|.++++..+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            589999999999999999999999999999743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.44  E-value=0.069  Score=42.56  Aligned_cols=32  Identities=34%  Similarity=0.634  Sum_probs=29.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      -.|+|+|+|+.|+.++.-++..|.+|+++|++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            46999999999999999999999999999983

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=92.41  E-value=0.048  Score=48.66  Aligned_cols=161  Identities=22%  Similarity=0.267  Sum_probs=101.8

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC---------------------CCC-------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------------------SMD-------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~---------------------~~~-------------------  254 (477)
                      ..|+|||+|..|+-+|..+++.|.+|.++++.+....                     ..|                   
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            3699999999999999999999999999998764310                     000                   


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEcC-
Q 011787          255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-  285 (477)
Q Consensus       255 ------------------------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-  285 (477)
                                                                      ..+...+.+.+.++|++++++++++++..++ 
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~  183 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS  183 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccccc
Confidence                                                            1233344556677899999999999987654 


Q ss_pred             CeEE-EEEeecCCCceEEEEcCEEEEeecCCCC-----------CCCC------------------------Ccccccee
Q 011787          286 DGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF-----------TAGL------------------------GLDKIGVE  329 (477)
Q Consensus       286 ~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~~p~-----------~~~l------------------------~~~~~gl~  329 (477)
                      +++. +.+.+. .+....+.++.||+|+|--..           ...+                        ..+..++.
T Consensus       184 G~V~Gv~~~~~-~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~  262 (322)
T d1d4ca2         184 GKVTGVLVKGE-YTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLV  262 (322)
T ss_dssp             SCCCEEEEEET-TTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEEC
T ss_pred             ccccceEEEee-cccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEE
Confidence            3443 444432 233457999999999982211           1000                        01111222


Q ss_pred             ecCCCCeecCCCCCCCCCCeEEecccCCC----CCchhHH----HHHHHHHHHHHc
Q 011787          330 TDKMGRIPVNERFATNIPGVYAIGDVIPG----PMLAHKA----EEDGVACVEFLA  377 (477)
Q Consensus       330 ~~~~g~i~vd~~l~t~~~~vya~GD~~~~----~~~~~~A----~~~g~~aa~~i~  377 (477)
                      ++..+.+ +++..+|.+|+|||+|+|+++    ..+..++    .--|++|+++.+
T Consensus       263 ~~~~~~~-~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g~~ag~~aa  317 (322)
T d1d4ca2         263 IDTKAEV-KSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAA  317 (322)
T ss_dssp             CCTTCEE-EBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ecCceEE-EECCCCCEeCceEEchhhcCCccccccchhhHHHHHHHHHHHHHHHHH
Confidence            2333322 234446789999999999853    2234333    444777777664

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.40  E-value=0.061  Score=43.85  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             CcEEEE-CCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVI-GGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvII-GgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|| |+|.-|.+.|..|++.|++|++.+|+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            368999 66999999999999999999999984

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.38  E-value=0.091  Score=41.26  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~   74 (477)
                      +..+|.|||+|..|.++|+.|...+.  ++.|+|.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            34589999999999999999999874  7999997

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.22  E-value=0.065  Score=42.69  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .-.|+|+|+|+.|+.++..++..|.+|++++++
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~   60 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRS   60 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccc
Confidence            357999999999999988888889999999984

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.20  E-value=0.091  Score=40.45  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRG   76 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~   76 (477)
                      .+|.|||+|..|.++|+.|...+.  ++.|+|..+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            479999999999999999999874  799999743

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.97  E-value=0.057  Score=44.30  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=27.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|||.|..|+..|..++ .|++|+.+|.+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din   31 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDIL   31 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSC
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECC
Confidence            46999999999999998886 59999999973

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.097  Score=40.83  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        45 dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +++|+|.|.-|...+..|.+.|.+|++||.+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d   35 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEecc
Confidence            6999999999999999999999999999983

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.80  E-value=0.066  Score=47.61  Aligned_cols=99  Identities=20%  Similarity=0.281  Sum_probs=73.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCC-----------C----------CC-------------------
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------S----------MD-------------------  254 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~-----------~----------~~-------------------  254 (477)
                      ..|+|||+|..|+-.|..+++.|.+|.++++.+....           .          .|                   
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~   99 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI   99 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence            4699999999999999999999999999998764310           0          00                   


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhcCcEEEeCceEEEEEEc-C
Q 011787          255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-G  285 (477)
Q Consensus       255 ------------------------------------------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~  285 (477)
                                                                      ..+...+.+.+++.|++++++++++++..+ +
T Consensus       100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~  179 (317)
T d1qo8a2         100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  179 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeeccc
Confidence                                                            124445566677889999999999998664 4


Q ss_pred             CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 011787          286 DGVK-LTLEPAAGGEKTILEADVVLVSAGR  314 (477)
Q Consensus       286 ~~~~-v~~~~~~~~~~~~i~~D~vi~a~G~  314 (477)
                      +++. +.+.. .++....+.++.||+|+|-
T Consensus       180 g~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         180 HSVVGAVVHG-KHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             SBEEEEEEEE-TTTEEEEEEEEEEEECCCC
T ss_pred             ccceeeEeec-ccceEEEEeccceEEeccc
Confidence            4554 44443 3344567899999999983

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.77  E-value=0.069  Score=48.44  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      .++|||+|..|+-+|..|++.|.+|.++++.+..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            5899999999999999999999999999987543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.076  Score=35.92  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecCC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG   76 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~~   76 (477)
                      +.|.|||||-=|...+....+.|.++.++|+..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            579999999999999999999999999999853

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=91.72  E-value=0.1  Score=40.16  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~   75 (477)
                      ++|.|||+|..|.++|..|...+  .++.|+|.+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            37999999999999999999987  489999974

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.71  E-value=0.083  Score=40.91  Aligned_cols=31  Identities=23%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~   74 (477)
                      .+|.|||+|..|.++|+.|...+  .++.|+|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   34 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEec
Confidence            57999999999999999999876  37999997

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.13  Score=40.98  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      -.|+|+|+|+.|+.++.-++..|. +|+++|++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            469999999999999999999998 79999883

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.66  E-value=0.091  Score=40.47  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=28.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      .+|.|||+|..|.++|+.|...+. ++.++|..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            479999999999999999988764 89999974

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.65  E-value=0.1  Score=41.44  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      ...+|+|+|+|-++-+++..|.+.|. +|.|+.|
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            34789999999999999999999996 7999987

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.61  E-value=0.13  Score=40.60  Aligned_cols=32  Identities=31%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .-+|+|+|+|+.|+.++.-++..|.+|+.+|+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~   59 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDI   59 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecc
Confidence            34799999999999999988889999999987

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=91.61  E-value=0.062  Score=48.08  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            49999999999999999999999999998754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.59  E-value=0.12  Score=36.73  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=34.4

Q ss_pred             CCCCCCCCcEEEECCChHHHHH-HHHHHHCCCeEEEEecC
Q 011787           37 FASASDENDVVVIGGGPGGYVA-AIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        37 ~~~~~~~~dvvIIGgG~AGl~a-A~~l~~~g~~V~lie~~   75 (477)
                      .|+|....++-+||-|=+|+++ |..|.+.|++|+--|..
T Consensus         2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           2 IPEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CCCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             CccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4667778899999999999999 88899999999999973

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.11  Score=42.85  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .+.+|+|+|| |..|...+.+|.+.|++|+++.|+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            4578999996 999999999999999999999884

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.47  E-value=0.12  Score=39.76  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=28.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~   74 (477)
                      .+|.|||+|..|.++|+.|...+.  ++.|+|.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~   34 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI   34 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            479999999999999999998874  7999997

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.33  Score=37.54  Aligned_cols=53  Identities=13%  Similarity=0.108  Sum_probs=40.1

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK  275 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  275 (477)
                      .+++|+|.|..|..++..|.+.|.+|+++...+        +......+.+...|+.++.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP--------EDDIKQLEQRLGDNADVIPG   56 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC--------HHHHHHHHHHHCTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEc
Confidence            469999999999999999999999999997643        32333344445567877654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.12  E-value=0.16  Score=39.44  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=28.5

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      +.+|.|||+|..|.++|..|...+. ++.|+|.+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~   36 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   36 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4689999999999999998888763 79999974

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.03  E-value=0.024  Score=48.20  Aligned_cols=26  Identities=38%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEE
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVT  241 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vt  241 (477)
                      +|+|||+|.+|+-.|..|++.|.+|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCce
Confidence            69999999999999999999987543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.94  E-value=0.52  Score=39.18  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             CCCcEEEECCChHHHHHHHHHHH--------------------CC-CeEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQ--------------------LG-LKTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~--------------------~g-~~V~lie~~~   76 (477)
                      ...+|+|||+|-.++=+|..|.+                    .| .+|.++.|+.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            35799999999999999999988                    35 4799998864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.099  Score=35.33  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      |+|.|+|||..|-.++..-.++|.++.++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            689999999999999999999999999987654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.60  E-value=0.13  Score=41.32  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      -.|+|+|+|+.|+.++.-++..|. +|+++|++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CEEEEECCCccchhheecccccccccccccccc
Confidence            579999999999999999999997 79999873

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.14  Score=40.50  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=28.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .-.|+|+|+|+.|+.++.-++..|.++++++.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~   62 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhcc
Confidence            35799999999999999888889999989987

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.30  E-value=0.15  Score=39.33  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCC--CeEEEEec
Q 011787           44 NDVVVIGG-GPGGYVAAIKAAQLG--LKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGg-G~AGl~aA~~l~~~g--~~V~lie~   74 (477)
                      ++|.|||+ |..|.++|..|...+  .++.|+|.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~   34 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccc
Confidence            36999996 999999999999987  48999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.27  E-value=0.13  Score=39.60  Aligned_cols=32  Identities=13%  Similarity=0.085  Sum_probs=28.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~~   75 (477)
                      ++|.|||+|..|.++|+.|+..+  .++.|+|.+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            47999999999999999999876  379999973

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.25  E-value=0.16  Score=40.06  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .+|-+||-|-.|...|.+|.+.|++|.++|++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            46999999999999999999999999999983

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.25  E-value=0.23  Score=36.20  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=31.8

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      ..+|.|+|||..|..++....++|.++.++..++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46799999999999999999999999999987654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.16  E-value=0.18  Score=39.59  Aligned_cols=34  Identities=29%  Similarity=0.646  Sum_probs=31.4

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      |.+++|+|+|..|...+....+.|.+|++++.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            7899999999999999999999999999998653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.93  E-value=0.16  Score=39.91  Aligned_cols=31  Identities=19%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|-|||-|..|...|.+|.+.|++|.++|+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~   31 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDR   31 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeC
Confidence            3689999999999999999999999999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.83  E-value=0.15  Score=39.09  Aligned_cols=31  Identities=19%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC--CeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g--~~V~lie~   74 (477)
                      ++|.|||+|..|.++|..|...+  .++.|+|.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            47999999999999999998876  47999997

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.71  E-value=0.17  Score=38.94  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=27.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHHCCC--eEEEEecC
Q 011787           45 DVVVIGG-GPGGYVAAIKAAQLGL--KTTCIEKR   75 (477)
Q Consensus        45 dvvIIGg-G~AGl~aA~~l~~~g~--~V~lie~~   75 (477)
                      +|.|||| |..|.++|+.|...+.  ++.|+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6999996 9999999999998874  69999873

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.32  E-value=0.21  Score=39.79  Aligned_cols=34  Identities=32%  Similarity=0.545  Sum_probs=31.6

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      |-+|+|+|+|..|...+....++|..|++++.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            6799999999999999999999999999998665

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=89.26  E-value=0.12  Score=46.21  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .|+|||+|..|+-+|..+++.|.+|+++++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            59999999999999999999999999998765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.08  E-value=0.2  Score=38.90  Aligned_cols=32  Identities=19%  Similarity=0.074  Sum_probs=29.4

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|.|||.|..|...|..|.+.|++|+++++.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~   32 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEG   32 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence            36899999999999999999999999999873

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.92  E-value=0.19  Score=40.04  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      -.|+|+|+|+.|+.++..++..|. +|+++|+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~   60 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS   60 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECC
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccc
Confidence            469999999999999999998896 6999987

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.70  E-value=0.19  Score=39.90  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ...+|+|+|+|-++-+++..|.+.+.+|+|+.|
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR   49 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANR   49 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccc
Confidence            346899999999999999999988889999988

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.64  E-value=0.51  Score=40.92  Aligned_cols=57  Identities=18%  Similarity=0.294  Sum_probs=41.7

Q ss_pred             CCeeEEEcc-cHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEEe
Q 011787          214 PKKLVVIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML  274 (477)
Q Consensus       214 ~~~v~IiG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  274 (477)
                      -++|+|+|| |.+|-.++..|.+.|.+|+.+.|.+...   +.. .......+...+++++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~---~~~-~~~~~~~~~~~~v~~v~   60 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS---NID-KVQMLLYFKQLGAKLIE   60 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS---CHH-HHHHHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc---chh-HHHHHhhhccCCcEEEE
Confidence            357999996 9999999999999999999998865432   222 22334456667788763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.49  E-value=0.23  Score=39.61  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=27.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      -.|+|+|+|+-|+.++..++..|. +|++.|.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~   61 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDI   61 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeecc
Confidence            469999999999999999999997 5777776

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.45  E-value=0.23  Score=39.71  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~   75 (477)
                      -.|+|+|+|+.|+.++..++..| .+|+++|.+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            35999999999999999999998 579999973

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.42  E-value=0.26  Score=38.93  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=28.2

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC--eEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~--~V~lie~~   75 (477)
                      .+|.|||.|.-|.+.|..|++.|.  +|..+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            469999999999999999999985  68888883

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.41  E-value=0.26  Score=39.28  Aligned_cols=32  Identities=31%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|-|||-|.-|...|.+|.+.|++|.++|++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            47999999999999999999999999999983

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.35  E-value=0.29  Score=44.04  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           40 ASDENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        40 ~~~~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      |++.++|+|.|| |+-|...+..|.+.|++|+++|+.
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            446678999996 999999999999999999999874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.31  E-value=0.29  Score=39.03  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .+|-|||-|..|...|.+|.+.|++|.++|+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~   34 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT   34 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCC
Confidence            57999999999999999999999999999983

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.28  E-value=0.25  Score=42.79  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++++|+|+|| |.-|-..+..|.+.|++|++++|+
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence            4678999998 999999999999999999999984

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.24  E-value=0.14  Score=38.45  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHC-CCe-EEEEecCCCCCce
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQL-GLK-TTCIEKRGALGGT   81 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~-g~~-V~lie~~~~~GG~   81 (477)
                      +++|+|+|+|-+|.+.+.++... +++ |..+|.++..-|.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~   43 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR   43 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC
Confidence            46899999999999988876543 566 7788876654443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.17  E-value=0.24  Score=39.01  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=28.3

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      -.|+|+|+|+.|+.++..++..|.+|++++.
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~   59 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDI   59 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCC
Confidence            4699999999999999999999999999986

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.13  E-value=0.34  Score=38.79  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.4

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ..+|+|||+|-+|-+++..|.+.|. +++|+.|.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~   51 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR   51 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence            4689999999999999999999986 69999884

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.11  E-value=0.41  Score=36.96  Aligned_cols=32  Identities=13%  Similarity=0.296  Sum_probs=26.7

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~  247 (477)
                      +|.+||+|..|.-++..|.+.| .++.++.|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5889999999999999888777 7888776653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.84  E-value=0.29  Score=39.78  Aligned_cols=32  Identities=34%  Similarity=0.389  Sum_probs=27.6

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      .-+|+|+|+|+.|+.++..++..|. +|+++|.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            3579999999999999999988876 6888887

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.77  E-value=0.33  Score=39.66  Aligned_cols=52  Identities=19%  Similarity=0.402  Sum_probs=38.0

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCCc--------CCCCCHHHHHHHHHHHHh
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--------VPSMDGEIRKQFQRSLEK  267 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~~--------~~~~~~~~~~~~~~~l~~  267 (477)
                      +|.|||.|+.|+-+|..|++.|.+|+.++.+...        .|..++...+.+.+....
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~   61 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT   61 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcc
Confidence            5899999999999999999999999988765422        234445555555544443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=87.71  E-value=0.26  Score=38.61  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      ...+++|||+|..|...|.+|...|. +++++.|
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR   56 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR   56 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence            45789999999999999999999997 5899877

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.68  E-value=0.39  Score=38.53  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=28.7

Q ss_pred             eeEEE-cccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          216 KLVVI-GAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       216 ~v~Ii-G~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      +|.|+ |+|..|..+|..|++.|.+|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57888 679999999999999999999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.63  E-value=0.12  Score=41.96  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      ++|+|+|+|..|.-+|..|++.|.+|+++.|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            47999999999999999999999999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.23  E-value=0.33  Score=42.23  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++.+|+|+|| |..|...+.+|.+.|++|+++.|+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3567999997 999999999999999999999884

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.05  E-value=0.27  Score=38.05  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             CCCeeEEEc-ccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG-~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .-++|.||| .|..|.-+|..|.+.|.+|+++.+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            357999999 69999999999999999999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.74  E-value=0.63  Score=39.97  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             CCeeEEEcc-cHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEEE
Q 011787          214 PKKLVVIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM  273 (477)
Q Consensus       214 ~~~v~IiG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~  273 (477)
                      -++|+|+|| |.+|-.++..|.+.|.+|+.+.|.+....  +.+.. .....+...+++++
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~--~~~~~-~~~~~~~~~~~~~~   60 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS--NSEKA-QLLESFKASGANIV   60 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT--THHHH-HHHHHHHTTTCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc--chhHH-HHHHhhccCCcEEE
Confidence            368999996 99999999999999999999998764432  22222 23345566677765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.14  E-value=0.3  Score=38.95  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ..+|+|||+|-++-+++..|.+.+ +|.|+.|
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR   48 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANR   48 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehh
Confidence            468999999999999999998776 8999987

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.05  E-value=0.47  Score=38.26  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             CCCcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      +.+.++|.|| |-.|..+|..|++.|.+|++++++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            4578999994 889999999999999999999984

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.89  E-value=0.36  Score=37.89  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=28.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      +|.|||.|..|.-+|..|.+.|.+|+.++|+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999988664

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.4  Score=37.35  Aligned_cols=33  Identities=24%  Similarity=0.168  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      .-+.++|||-|..|-.+|..|+..|.+|+++|.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~   55 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEI   55 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeec
Confidence            346799999999999999999999999999998

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.59  E-value=0.47  Score=36.18  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=26.7

Q ss_pred             cEEEEC-CChHHHHHHHHHHHCCC--eEEEEec
Q 011787           45 DVVVIG-GGPGGYVAAIKAAQLGL--KTTCIEK   74 (477)
Q Consensus        45 dvvIIG-gG~AGl~aA~~l~~~g~--~V~lie~   74 (477)
                      +|.||| +|..|.++|+.|...+.  ++.|+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999999874  7999984

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.55  E-value=0.36  Score=37.64  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      .+|+++|+|-|.+|-.+|..++.+|.+|++.+..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            4899999999999999999999999999998764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.28  E-value=0.44  Score=37.64  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             ccCCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       210 ~~~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ....+++++|+|+|-++--++..|.+.|.+++++.|+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            33457999999999999999999999999999887753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.04  E-value=0.37  Score=38.51  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=28.5

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCCcEEEEEeC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA  246 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~  246 (477)
                      +|.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5899999999999999999999999998664

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.84  E-value=0.57  Score=36.78  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+++++|+|+|.+|.-.+..++..|.+|..+.+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            47899999999999998888889999999888765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.60  E-value=0.38  Score=40.69  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCC-eEEEEecC
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR   75 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~   75 (477)
                      ..+|+|||+|--|..+|..|++.|. +++|+|.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            3689999999999999999999996 79999973

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=84.43  E-value=0.44  Score=43.42  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCCc
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI  249 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~~  249 (477)
                      -.++|||+|..|+-+|..|++.+ .+|.++++.+..
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            36899999999999999999988 599999998753

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.34  E-value=0.49  Score=36.23  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             CcEEEEC-CChHHHHHHHHHHH-C--CCeEEEEecC
Q 011787           44 NDVVVIG-GGPGGYVAAIKAAQ-L--GLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIG-gG~AGl~aA~~l~~-~--g~~V~lie~~   75 (477)
                      ++|.||| +|..|.++|+.|.. .  ..++.|+|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            4799999 59999999998864 3  4689999863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.01  E-value=0.41  Score=37.97  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      -.|+|+|+|+.|+.++..++..|. +|+++|.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~   60 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGT   60 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCC
Confidence            469999999999999999999986 6888887

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=83.79  E-value=0.53  Score=36.69  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFA  246 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~  246 (477)
                      ..++++|||+|.+|..++..|...|. +++++.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            36899999999999999999999997 58888765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.60  E-value=0.56  Score=36.81  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      +.+++++|+|+|.+|+-++..++..|.+|..+.+++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            347899999999999999999999999998887653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.53  E-value=0.65  Score=37.72  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             CCeeEEEc-ccHHHHHHHHHHHHcCCcEEEEEeCCCcC
Q 011787          214 PKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAADIV  250 (477)
Q Consensus       214 ~~~v~IiG-~G~~g~e~a~~l~~~g~~Vtli~~~~~~~  250 (477)
                      -++|+|+| .|.+|-.++..|.+.|.+|+.+.|++.-+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            37899999 59999999999999999999999876543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.52  E-value=0.44  Score=36.98  Aligned_cols=34  Identities=26%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      .-+.++|+|=|..|-.+|.+|+..|.+|+++|.+
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence            4578999999999999999999999999999983

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.38  E-value=0.53  Score=36.32  Aligned_cols=31  Identities=13%  Similarity=-0.031  Sum_probs=28.8

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      +++.|||.|--|.+.|..|.+.++++++.++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r   31 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGS   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcC
Confidence            3689999999999999999999999999987

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.30  E-value=0.37  Score=41.27  Aligned_cols=32  Identities=9%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEecC
Q 011787           44 NDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ++|+|.|| |..|-..+.+|.+.|++|+.++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            57999998 999999999999999999999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.79  E-value=0.62  Score=36.80  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=26.2

Q ss_pred             CCcEEEECCChHHHHHHHHHHHCCCeE-EEEec
Q 011787           43 ENDVVVIGGGPGGYVAAIKAAQLGLKT-TCIEK   74 (477)
Q Consensus        43 ~~dvvIIGgG~AGl~aA~~l~~~g~~V-~lie~   74 (477)
                      .-+|+|+|+|+.|+.++.-++..|.++ ++.|+
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            457999999999999999988888765 45554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=82.65  E-value=0.64  Score=36.69  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCCC-eEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~   74 (477)
                      -.|+|+|+|+.|+.++..++..+. +|+.+|+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~   61 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL   61 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecc
Confidence            459999999999999999999875 6888887

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.45  E-value=0.62  Score=41.25  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=28.7

Q ss_pred             CcEEEECC-ChHHHHHHHHHHHCCCeEEEEec
Q 011787           44 NDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGg-G~AGl~aA~~l~~~g~~V~lie~   74 (477)
                      ++|+|+|| |+-|-..+..|.+.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            36999998 89999999999999999999986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.29  E-value=1.5  Score=34.79  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCCeEEEEecC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR   75 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~~V~lie~~   75 (477)
                      ....+.|||.|..|-..|..|...|.+|..+|+.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~   74 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT   74 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCceEEEeccccccccceeeeecccccccccccc
Confidence            3578999999999999999999999999999984

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.21  E-value=0.76  Score=36.92  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             CCCeeEEEc-ccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          213 VPKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG-~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      .+|+++|.| +|-+|.++|..|++.|.+|+++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            479999998 68999999999999999999998875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=82.07  E-value=0.41  Score=41.80  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD  248 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~~  248 (477)
                      -.|+|||+|..|+-.|..+++.| +|.++++.+.
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~   40 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV   40 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence            36999999999999998888877 8999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=81.85  E-value=0.66  Score=35.71  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEec
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEK   74 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~   74 (477)
                      ++|.+||+|.-|-+.|..|.+.| .+|.+++|
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r   32 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence            36899999999999999988876 89999988

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.69  E-value=0.57  Score=38.81  Aligned_cols=31  Identities=45%  Similarity=0.487  Sum_probs=26.3

Q ss_pred             eeEEEcccHHHHHHHHHHHHcCC-cEEEEEeC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFA  246 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~  246 (477)
                      .++|||+|+.|+.+|..+++.|. .|.+++..
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            58999999999999999999885 57777653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.52  E-value=0.74  Score=36.34  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=27.9

Q ss_pred             CcEEEECCChHHHHHHHHHHHCC-CeEEEEecC
Q 011787           44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKR   75 (477)
Q Consensus        44 ~dvvIIGgG~AGl~aA~~l~~~g-~~V~lie~~   75 (477)
                      -.|+|+|+|..|+.++..++..| .+|+.++.+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            45999999999999999999997 578888873

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.48  E-value=0.76  Score=35.83  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             CCCCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       212 ~~~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      +.+++|+|+|+|.+|+-.+..++..|.+|..+.+++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            347899999999999999999999999988887553

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.46  E-value=0.87  Score=34.72  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=27.0

Q ss_pred             eeEEEcc-cHHHHHHHHHHHHcC--CcEEEEEeCC
Q 011787          216 KLVVIGA-GYIGLEMGSVWARLG--SEVTVVEFAA  247 (477)
Q Consensus       216 ~v~IiG~-G~~g~e~a~~l~~~g--~~Vtli~~~~  247 (477)
                      +|.|||+ |.+|..+|..+...+  .++.++...+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5899995 999999999999887  4888887653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=1.3  Score=37.14  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             CCeeEEEcccH-HHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          214 PKKLVVIGAGY-IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       214 ~~~v~IiG~G~-~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      +|.++|.|++- +|.++|..|++.|.+|.+..|+.        +-.+.+.+.++..|.++
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~--------~~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK--------HGLEETAAKCKGLGAKV   58 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCcE
Confidence            67777777664 99999999999999999988754        33345555566665443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.02  E-value=0.75  Score=36.65  Aligned_cols=34  Identities=32%  Similarity=0.527  Sum_probs=31.3

Q ss_pred             CCeeEEEcccHHHHHHHHHHHHcCCcEEEEEeCC
Q 011787          214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA  247 (477)
Q Consensus       214 ~~~v~IiG~G~~g~e~a~~l~~~g~~Vtli~~~~  247 (477)
                      ++++.|||.|.+|-++|..+..+|.+|..+.+.+
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CceEEEeccccccccceeeeeccccccccccccc
Confidence            6899999999999999999999999999987654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.79  E-value=0.8  Score=37.60  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=30.3

Q ss_pred             CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEecCC
Q 011787           42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRG   76 (477)
Q Consensus        42 ~~~dvvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~   76 (477)
                      .+.++++.|+|.||+..|..+.+.+. ++.++|+..
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            45789999999999999999998874 699999854

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=1.2  Score=32.93  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             CCCeeEEEcccH-----------HHHHHHHHHHHcCCcEEEEEeCCCc
Q 011787          213 VPKKLVVIGAGY-----------IGLEMGSVWARLGSEVTVVEFAADI  249 (477)
Q Consensus       213 ~~~~v~IiG~G~-----------~g~e~a~~l~~~g~~Vtli~~~~~~  249 (477)
                      ..++|+|+|+|+           .++.++..|++.|.++.++..++.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            358999999985           6778889999999999999877754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.54  E-value=1.3  Score=37.50  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=38.9

Q ss_pred             CCeeEEEccc-HHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          214 PKKLVVIGAG-YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       214 ~~~v~IiG~G-~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      +|.++|.|++ -+|..+|..|++.|.+|.+..|+.        +-.+.+.+.+++.|.++
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--------~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR--------EALEKAEASVREKGVEA   56 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHTTTSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCcE
Confidence            6778888764 589999999999999999988643        44556667777776543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=80.39  E-value=0.71  Score=36.70  Aligned_cols=35  Identities=31%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CCCeeEEEcccHHHHHHHHHHHHcCC-cEEEEEeCC
Q 011787          213 VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA  247 (477)
Q Consensus       213 ~~~~v~IiG~G~~g~e~a~~l~~~g~-~Vtli~~~~  247 (477)
                      .+++|+|+|+|.+|.-++..+..+|. +|+.+.+++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccc
Confidence            37899999999999999999999997 678877653

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=80.35  E-value=0.71  Score=40.38  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             CeeEEEcccHHHHHHHHHHHHc--CCcEEEEEeCC
Q 011787          215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAA  247 (477)
Q Consensus       215 ~~v~IiG~G~~g~e~a~~l~~~--g~~Vtli~~~~  247 (477)
                      -.|+|||+|..|+-.|..+++.  |.+|.++++..
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            4689999999999999999887  56899998765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.28  E-value=1.6  Score=36.77  Aligned_cols=50  Identities=20%  Similarity=0.263  Sum_probs=35.7

Q ss_pred             CeeE-EEcc-cHHHHHHHHHHHHcCCcEEEEEeCCCcCCCCCHHHHHHHHHHHHhcCcEE
Q 011787          215 KKLV-VIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF  272 (477)
Q Consensus       215 ~~v~-IiG~-G~~g~e~a~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~l~~~gv~~  272 (477)
                      |+|+ |.|+ +-+|..+|..|++.|.+|.+..|++        +-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~--------~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND--------ATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCcE
Confidence            4564 4454 4589999999999999999988753        44455666677766543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=80.14  E-value=0.69  Score=41.87  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             eeEEEcccHHHHHHHHHHHHcC-CcEEEEEeCCC
Q 011787          216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAAD  248 (477)
Q Consensus       216 ~v~IiG~G~~g~e~a~~l~~~g-~~Vtli~~~~~  248 (477)
                      .++|||+|..|+-+|..|++.+ .+|.++++.+.
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            6899999999999999999876 69999999864