Citrus Sinensis ID: 011801
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MB95 | 492 | 1-aminocyclopropane-1-car | N/A | no | 0.985 | 0.955 | 0.740 | 0.0 | |
| Q07262 | 491 | 1-aminocyclopropane-1-car | N/A | no | 0.987 | 0.959 | 0.694 | 0.0 | |
| Q06429 | 488 | 1-aminocyclopropane-1-car | yes | no | 0.968 | 0.946 | 0.695 | 0.0 | |
| P31531 | 484 | 1-aminocyclopropane-1-car | no | no | 0.981 | 0.966 | 0.681 | 0.0 | |
| Q00379 | 494 | 1-aminocyclopropane-1-car | N/A | no | 0.987 | 0.953 | 0.677 | 0.0 | |
| P18485 | 485 | 1-aminocyclopropane-1-car | N/A | no | 0.947 | 0.931 | 0.698 | 0.0 | |
| P23599 | 493 | 1-aminocyclopropane-1-car | N/A | no | 0.976 | 0.945 | 0.675 | 0.0 | |
| P23279 | 493 | 1-aminocyclopropane-1-car | N/A | no | 0.976 | 0.945 | 0.672 | 0.0 | |
| P27486 | 517 | 1-aminocyclopropane-1-car | N/A | no | 0.993 | 0.916 | 0.639 | 0.0 | |
| Q06402 | 496 | 1-aminocyclopropane-1-car | no | no | 0.974 | 0.937 | 0.672 | 0.0 |
| >sp|Q9MB95|1A11_PRUMU 1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/486 (74%), Positives = 411/486 (84%), Gaps = 16/486 (3%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSKIAT+ GHGE+S YFDGWKA+DRNPFHPT+NP GVIQ+GLAENQL FD I+DWI KN
Sbjct: 12 LLSKIATSEGHGENSPYFDGWKAYDRNPFHPTKNPEGVIQMGLAENQLSFDSIEDWIKKN 71
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICT EGVE FK++AIFQDYHG PEFR+AVA FM K RGGRVTFDP+R+VM GGATG
Sbjct: 72 PKASICTPEGVEEFKNVAIFQDYHGFPEFRKAVAMFMSKARGGRVTFDPNRVVMSGGATG 131
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANEL+MFCLA+PGDAFLVPSPYY AF RDL WRTGVQIVPV CD SNNFKIT+EALEAAY
Sbjct: 132 ANELVMFCLADPGDAFLVPSPYYPAFFRDLGWRTGVQIVPVDCDSSNNFKITKEALEAAY 191
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E+AQ+ +IN+KGLIITNPSNPLGTTLDR+TL+SLV FIN KNIHLVCDEIYAATVFSSP
Sbjct: 192 EKAQKNNINVKGLIITNPSNPLGTTLDRNTLESLVEFINQKNIHLVCDEIYAATVFSSPT 251
Query: 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSS 302
FT ++EVIQ M+CN +LIHI+YSLSKDMGLPG RVGIVYS+ND VVN GRKMSSFGLVSS
Sbjct: 252 FTCISEVIQNMNCNPNLIHIVYSLSKDMGLPGLRVGIVYSYNDDVVNIGRKMSSFGLVSS 311
Query: 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH 362
QTQ++L SML D+EFV FL + KRLAKRH FTKGLE+VGINCLKSNAGLF WMDLR
Sbjct: 312 QTQHMLPSMLLDEEFVARFLETSPKRLAKRHGVFTKGLEEVGINCLKSNAGLFCWMDLRR 371
Query: 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
LL+++T +GE+ LWR IVN+V NVSPGSSF+C EPGWFRVCFANMDD+TL+VAL RI
Sbjct: 372 LLEDQTFDGEMVLWRVIVNEVGPNVSPGSSFKCVEPGWFRVCFANMDDETLEVALKRIRT 431
Query: 423 FVQQDKESEK-----PTKKRWQQNLRVSFSSRIYEQ------GVMSPHMMSPHSPIPQSP 471
FV+Q K+++ + KRW+ NLR+SFSS + V+SPHMMSPH SP
Sbjct: 432 FVRQGKKAQDQVVQVKSPKRWKSNLRLSFSSSSTRRFDQESVNVLSPHMMSPH-----SP 486
Query: 472 LVRART 477
LVRA+T
Sbjct: 487 LVRAKT 492
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Prunus mume (taxid: 102107) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q07262|1A1C_TOBAC 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/485 (69%), Positives = 405/485 (83%), Gaps = 14/485 (2%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
ILSK+ATN GE+S YFDGWKA+D +PFHP +NP GVIQ+GLAENQLCFDLI++WI +N
Sbjct: 11 ILSKLATNEELGENSPYFDGWKAYDNDPFHPLKNPNGVIQMGLAENQLCFDLIEEWIKRN 70
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICT EG++ F+ IA FQDYHGLPEFR A+AKFM K RGGRVTFDP+R+VM GGATG
Sbjct: 71 PNASICTTEGIKSFRAIANFQDYHGLPEFRSAIAKFMEKTRGGRVTFDPERVVMAGGATG 130
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE I+FCLA+ GDAFLVPSPYY AF+RDL WRTGVQ++P+ CD SNNF+IT +A+ AY
Sbjct: 131 ANETIIFCLADTGDAFLVPSPYYPAFNRDLRWRTGVQLIPIPCDSSNNFQITTKAVREAY 190
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E AQ+++I +KGLI+TNPSNPLGTTLDRDTLK+L++F N NIHLVCDEIYAATVF++P+
Sbjct: 191 ENAQKSNIKVKGLILTNPSNPLGTTLDRDTLKNLLTFTNQHNIHLVCDEIYAATVFNTPQ 250
Query: 243 FTSVAEVI--QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
F S+AE++ + CN+DL+HI+YSLSKDMGLPGFRVGIVYSFND VVNC RKMSSFGLV
Sbjct: 251 FVSIAEILDDETSHCNKDLVHIVYSLSKDMGLPGFRVGIVYSFNDAVVNCARKMSSFGLV 310
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
S+QTQYLLA MLSD+ FV NFL E+SKRLAKRH +FT GLE+VGI CL+SNAGLF WMDL
Sbjct: 311 STQTQYLLAEMLSDERFVSNFLTESSKRLAKRHKHFTNGLEEVGIKCLRSNAGLFCWMDL 370
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
R LLKE T + E++LWR I+NDVKLNVSPGSSF C EPG+FRVCFANMDD+T+ +AL RI
Sbjct: 371 RPLLKESTFDSEMSLWRVIINDVKLNVSPGSSFDCQEPGFFRVCFANMDDETVDIALARI 430
Query: 421 AAFVQQDKESEKPT------KKRWQQ-NLRVSFSSRIYEQGVMSPHMMSP-HSPIPQSPL 472
+FV K ++ T K++W++ NLR+SFS R+Y++ V +SP SPIP SPL
Sbjct: 431 RSFVGVKKSGDESTPILMEKKQQWKKNNLRLSFSKRMYDESV----NLSPLSSPIPHSPL 486
Query: 473 VRART 477
VRART
Sbjct: 487 VRART 491
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Nicotiana tabacum (taxid: 4097) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q06429|1A11_ARATH 1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Arabidopsis thaliana GN=ACS1 PE=1 SV=2 | Back alignment and function description |
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Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/479 (69%), Positives = 396/479 (82%), Gaps = 17/479 (3%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSK+A ++ HGE S YF GWKA+D NPFHPT NP GVIQ+GLAENQLC DLIK+WI +N
Sbjct: 10 LLSKLALSDKHGEASPYFHGWKAYDNNPFHPTHNPQGVIQMGLAENQLCSDLIKEWIKEN 69
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICTAEG++ F DIA+FQDYHGL +FRQA+A FM + RGGRV F+ +R+VM GGATG
Sbjct: 70 PQASICTAEGIDSFSDIAVFQDYHGLKQFRQAIATFMERARGGRVRFEAERVVMSGGATG 129
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE IMFCLA+PGDAFLVP+PYYAAFDRDL WRTGV+I+PV C SNNF+IT++ALE+AY
Sbjct: 130 ANETIMFCLADPGDAFLVPTPYYAAFDRDLRWRTGVRIIPVECSSSNNFQITKQALESAY 189
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
+AQE I IKGLII SNPLGT+LDR+TL+SLVSFINDK IHLVCDEIYAATVF+ P
Sbjct: 190 LKAQETGIKIKGLII---SNPLGTSLDRETLESLVSFINDKQIHLVCDEIYAATVFAEPG 246
Query: 243 FTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVS 301
F SVAE+IQEM NRDLIHI+YSLSKDMGLPGFRVG+VYS+ND VV+C R+MSSFGLVS
Sbjct: 247 FISVAEIIQEMYYVNRDLIHIVYSLSKDMGLPGFRVGVVYSYNDVVVSCARRMSSFGLVS 306
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
SQTQ LA+MLSD FVDNFLVE SKR+AKRHH FT+GLE++GI+CL+SNAGLF MDLR
Sbjct: 307 SQTQSFLAAMLSDQSFVDNFLVEVSKRVAKRHHMFTEGLEEMGISCLRSNAGLFVLMDLR 366
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
H+LK++T + E+ALWR I+N VK+NVSPGSSF C+EPGWFRVCFANMD+DTLQ+AL RI
Sbjct: 367 HMLKDQTFDSEMALWRVIINKVKINVSPGSSFHCSEPGWFRVCFANMDEDTLQIALERIK 426
Query: 422 AFVQQDKES-------------EKPTKKRWQQNLRVSFSSRIYEQGVMSPHMMSPHSPI 467
FV D+ + E +K +Q+NL++S SS YE+ V SP +MSPHSP+
Sbjct: 427 DFVVGDRANKNKNCNCICNNKRENKKRKSFQKNLKLSLSSMRYEEHVRSPKLMSPHSPL 485
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P31531|1A1C_SOYBN 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1 | Back alignment and function description |
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Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/477 (68%), Positives = 396/477 (83%), Gaps = 9/477 (1%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSK+ +GHGE S YFDGWKA+D NPFHP +NP GVIQ+GLAENQL DL++DWI N
Sbjct: 11 LLSKMVIGDGHGEASPYFDGWKAYDENPFHPKENPNGVIQMGLAENQLTSDLVEDWILNN 70
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICT EG+ F+ IA FQDYHGLPEFR AVAKFMG+ RG RVTFDPDRIVM GGATG
Sbjct: 71 PEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPDRIVMSGGATG 130
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
A+E+ FCLA+PGDAFLVP PYY FDRDL WRTG+++VPV CD SNNFK+T++ALE AY
Sbjct: 131 AHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFKLTKQALEDAY 190
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E+A+E +I +KGL+ITNPSNPLGT +DR+TL++++SFIN+K IHLV DEIY+ATVFS P
Sbjct: 191 EKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEIYSATVFSHPS 250
Query: 243 FTSVAEVIQE---MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
F S+AE+++E ++C+R+L+HI+YSLSKDMG PGFRVGI+YS+ND VV+C RKMSSFGL
Sbjct: 251 FISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGL 310
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VS+QTQYLLASML+DDEFV++FLVE++KRLA+RH FT GL +VGI CL+SNAGLF WMD
Sbjct: 311 VSTQTQYLLASMLNDDEFVESFLVESAKRLAQRHRVFTGGLAKVGIKCLQSNAGLFVWMD 370
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
LR LLK+ TL+ E+ LWR I+++VK+NVSPGSSF CTEPGWFRVC+ANMDD +Q+AL R
Sbjct: 371 LRQLLKKPTLDSEMELWRVIIDEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQR 430
Query: 420 IAAFVQQDKESEKPTKKR-WQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRA 475
I FV Q+KE P KK W NLR+S +R ++ MMSPHSPIPQSPLV+A
Sbjct: 431 IRNFVLQNKEIMVPNKKHCWHSNLRLSLKTRRFDD-----IMMSPHSPIPQSPLVKA 482
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Glycine max (taxid: 3847) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00379|1A12_CUCPE 1-aminocyclopropane-1-carboxylate synthase 2 OS=Cucurbita pepo GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/487 (67%), Positives = 399/487 (81%), Gaps = 16/487 (3%)
Query: 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITK 61
+LSKIA ++GHGE+SAYFDGWKA+D NPFHP NP GVIQ+GLAENQL F +I DWI K
Sbjct: 12 ALLSKIAIDDGHGENSAYFDGWKAYDNNPFHPENNPLGVIQMGLAENQLSFGMIVDWIRK 71
Query: 62 NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121
+P ASICT EG+E FK IA FQDYHGL EFR+A+A FMGK RGGRV FDP RIVMGGGAT
Sbjct: 72 HPEASICTPEGLEKFKSIANFQDYHGLQEFRKAMASFMGKVRGGRVKFDPSRIVMGGGAT 131
Query: 122 GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA 181
GA+E ++FCLA+PGDAFLVPSPYYAAFDRDL WRT QI+PVHC+ SNNF++T ALE A
Sbjct: 132 GASETVIFCLADPGDAFLVPSPYYAAFDRDLKWRTRAQIIPVHCNSSNNFQVTEAALEIA 191
Query: 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241
Y++AQEA++ +KG+IITNPSNPLGTT DRDTLK+LV+F+N +IHL+CDEIY+ATVF +P
Sbjct: 192 YKKAQEANMKVKGVIITNPSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVFKAP 251
Query: 242 KFTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
FTS+AE++++M+ C ++LIHI+YSLSKDMGLPGFRVGI+YS+ND VV R+MSSFGLV
Sbjct: 252 TFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQ+LLA+MLSD++FVD FL E SKRL +RH FTK L+++GI CL SNAG+F WMDL
Sbjct: 312 SSQTQHLLAAMLSDEDFVDKFLAENSKRLGERHARFTKELDKMGITCLNSNAGVFVWMDL 371
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
R LLK++T + E+ LWR I+N+VKLNVSPGSSF TEPGWFRVCFANMDD+T+ VALNRI
Sbjct: 372 RRLLKDQTFKAEMELWRVIINEVKLNVSPGSSFHVTEPGWFRVCFANMDDNTVDVALNRI 431
Query: 421 AAFVQ-----QDKESEKPTKKRWQQN---LRVSFSSRIYEQG--VMSPHMMSPHSPIPQS 470
+FV+ +D P+K R + N L SFS R Y++G + SPH MSPH S
Sbjct: 432 HSFVENIDKKEDNTVAMPSKTRHRDNKLRLSFSFSGRRYDKGNVLNSPHTMSPH-----S 486
Query: 471 PLVRART 477
PLVRART
Sbjct: 487 PLVRART 493
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Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita pepo (taxid: 3663) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P18485|1A12_SOLLC 1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/461 (69%), Positives = 389/461 (84%), Gaps = 9/461 (1%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
ILSK+ATN HGE+S YFDGWKA+D +PFHP +NP GVIQ+GLAENQLC DLI+DWI +N
Sbjct: 11 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 70
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P SIC+ EG++ FK IA FQDYHGLPEFR+A+AKFM K RGGRV FDP+R+VM GGATG
Sbjct: 71 PKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 129
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE I+FCLA+PGDAFLVPSPYY AF+RDL WRTGVQ++P+HC+ SNNFKIT +A++ AY
Sbjct: 130 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 189
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E AQ+++I +KGLI+TNPSNPLGTTLD+DTLKS++SF N NIHLVCDEIYAATVF +P+
Sbjct: 190 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 249
Query: 243 FTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
F S+AE++ E + CN+DL+HI+YSLSKDMGLPGFRVGI+YSFND VVNC RKMSSFGL
Sbjct: 250 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGL 309
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VS+QTQY LA+MLSD++FVDNFL E++ RL KRH +FT GLE VGI CLK+NAGLF WMD
Sbjct: 310 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMD 369
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
LR LL+E T + E++LWR I+NDVKLNVSPGSSF+C EPGWFRVCFANMDD T+ +AL R
Sbjct: 370 LRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALAR 429
Query: 420 IAAFV----QQDKESEKPTKKRWQQ-NLRVSFSSRIYEQGV 455
I FV DK S K++W++ NLR+SFS R+Y++ V
Sbjct: 430 IRRFVGVEKSGDKSSSMEKKQQWKKNNLRLSFSKRMYDESV 470
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1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P23599|1A11_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMW33 OS=Cucurbita maxima GN=ACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/477 (67%), Positives = 394/477 (82%), Gaps = 11/477 (2%)
Query: 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITK 61
+LSKIA ++GHGE+S YFDGWKA+D +PFHP NP GVIQ+GLAENQL FD+I DWI K
Sbjct: 12 ALLSKIAVDDGHGENSPYFDGWKAYDNDPFHPEDNPLGVIQMGLAENQLSFDMIVDWIRK 71
Query: 62 NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121
+P ASICT +G+E FK IA FQDYHGLPEFR +A FMGK RGGRV FDP RIVMGGGAT
Sbjct: 72 HPEASICTPKGLERFKSIANFQDYHGLPEFRNGIASFMGKVRGGRVQFDPSRIVMGGGAT 131
Query: 122 GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA 181
GA+E ++FCLA+PGDAFLVPSPYYAAFDRDL WRT QI+ VHC+ SNNF++T+ ALE A
Sbjct: 132 GASETVIFCLADPGDAFLVPSPYYAAFDRDLKWRTRAQIIRVHCNSSNNFQVTKAALEIA 191
Query: 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241
Y++AQEA+I +KG+IITNPSNPLGTT DRDTLK+LV+F+N +IHL+CDEIY+ATVF +P
Sbjct: 192 YKKAQEANIKVKGVIITNPSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVFKAP 251
Query: 242 KFTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
F S+A++++EM+ C ++LIHI+YSLSKDMGLPGFRVGI+YS+ND VV R+MSSFGLV
Sbjct: 252 TFISIAQIVEEMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQ+LLA+MLSD++FVD FL E SKRLA+RH FTK L+++GI CL SNAG+F WMDL
Sbjct: 312 SSQTQHLLAAMLSDEDFVDKFLAENSKRLAERHARFTKELDKMGITCLNSNAGVFVWMDL 371
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
R LLK++T + E+ LWR I+N+VKLNVSPGSSF TEPGWFRVCFANMDD+T+ VALNRI
Sbjct: 372 RRLLKDQTFKAEMELWRVIINEVKLNVSPGSSFHVTEPGWFRVCFANMDDNTVDVALNRI 431
Query: 421 AAFVQ-----QDKESEKPTKKRWQQN---LRVSFSSRIYEQG--VMSPHMMSPHSPI 467
+FV+ +D P+K R ++N L SFS R Y++G + SPH MSPHSP+
Sbjct: 432 HSFVENIDKKEDNTVAMPSKTRRRENKLRLSFSFSGRRYDEGNVLNSPHTMSPHSPL 488
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P23279|1A11_CUCPE 1-aminocyclopropane-1-carboxylate synthase 1 OS=Cucurbita pepo GN=ACC1A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/477 (67%), Positives = 393/477 (82%), Gaps = 11/477 (2%)
Query: 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITK 61
+LSKIA ++GHGE+S YFDGWKA+D +PFHP NP GVIQ+GLAENQL FD+I DWI K
Sbjct: 12 ALLSKIALDDGHGENSPYFDGWKAYDNDPFHPENNPLGVIQMGLAENQLSFDMIVDWIRK 71
Query: 62 NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121
+P ASICT EG+E FK IA FQDYHGLPEFR A+A FMGK RGGRV FDP RIVMGGGAT
Sbjct: 72 HPEASICTPEGLERFKSIANFQDYHGLPEFRNAIANFMGKVRGGRVKFDPSRIVMGGGAT 131
Query: 122 GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA 181
GA+E ++FCLA+PGDAFLVPSPYYA FDRDL WRT QI+ VHC+ SNNF++T+ ALE A
Sbjct: 132 GASETVIFCLADPGDAFLVPSPYYAGFDRDLKWRTRAQIIRVHCNGSNNFQVTKAALEIA 191
Query: 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241
Y++AQEA++ +KG+IITNPSNPLGTT DRDTLK+LV+F+N +IHL+CDEIY+ATVF +P
Sbjct: 192 YKKAQEANMKVKGVIITNPSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVFKAP 251
Query: 242 KFTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
FTS+AE++++M+ C ++LIHI+YSLSKDMGLPGFRVGI+YS+ND VV R+MSSFGLV
Sbjct: 252 TFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQ+LLA+MLSD++FVD FL E SKR+ +RH FTK L+++GI CL SNAG+F WMDL
Sbjct: 312 SSQTQHLLAAMLSDEDFVDKFLAENSKRVGERHARFTKELDKMGITCLNSNAGVFVWMDL 371
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
R LLK++T + E+ LWR I+N+VKLNVSPGSSF TEPGWFRVCFANMDD+T+ VALNRI
Sbjct: 372 RRLLKDQTFKAEMELWRVIINEVKLNVSPGSSFHVTEPGWFRVCFANMDDNTVDVALNRI 431
Query: 421 AAFVQ-----QDKESEKPTKKRWQQN---LRVSFSSRIYEQG--VMSPHMMSPHSPI 467
+FV+ +D P+K R + N L SFS R Y++G + SPH MSPHSP+
Sbjct: 432 HSFVENIDKKEDNTVAMPSKTRHRDNKLRLSFSFSGRRYDEGNVLNSPHTMSPHSPL 488
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita pepo (taxid: 3663) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P27486|1A1C_DIACA 1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/507 (63%), Positives = 398/507 (78%), Gaps = 33/507 (6%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
ILSKIATN+GHGE+ YFDGWKA+DR+P+H T+N GVIQ+GLAENQLCFDL+ +W+ KN
Sbjct: 12 ILSKIATNDGHGENLEYFDGWKAYDRDPYHSTKNSNGVIQMGLAENQLCFDLVTEWLLKN 71
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICT EGV F DIAIFQDYHGLPEFR AVAKFMGK R +V F+PDRIVM GGA+
Sbjct: 72 PQASICTNEGVNKFMDIAIFQDYHGLPEFRSAVAKFMGKARDEKVIFNPDRIVMSGGAS- 130
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
A+E ++FCLANPGDAFL+PSPYY AF+RDL WRTGV ++P C SNNFKIT+EAL++AY
Sbjct: 131 ASETLLFCLANPGDAFLIPSPYYPAFNRDLRWRTGVNLIPFTCSSSNNFKITKEALQSAY 190
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E A + +I +KG+I+TNPSNPLGT LD+DTLK L++F+N KNIHLVCDEIYA TVF+SP
Sbjct: 191 EDALKKNIKVKGIIVTNPSNPLGTVLDKDTLKMLLTFVNAKNIHLVCDEIYATTVFNSPS 250
Query: 243 FTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVS 301
F SVAEVI++M N+DL+HI+YSLSKDMG+PGFRVGI+YS+ND VV+ R+MSSFGLVS
Sbjct: 251 FISVAEVIKDMPHVNQDLVHILYSLSKDMGMPGFRVGIIYSYNDRVVSTARRMSSFGLVS 310
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
SQTQ+++A++LSDD+FV FLVE+ RL +RH +FT L ++GI CL+ NA LF WMDLR
Sbjct: 311 SQTQFMIAALLSDDDFVRRFLVESRDRLFRRHQHFTSELAKIGIGCLQGNAALFVWMDLR 370
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
HLL E T+E E+ LWR I+N+VK+NVSPGSSF C+EPGWFRVCFANMD+ TL VALNRI
Sbjct: 371 HLLDEATVERELKLWRVIINEVKINVSPGSSFLCSEPGWFRVCFANMDNATLDVALNRIR 430
Query: 422 AFVQQDKESEKPT-----------------------------KKRWQQNLRVSFSSRIYE 452
+FV + + KKR Q LR+SF++R +E
Sbjct: 431 SFVTRGRVDNSTMTTTSARAAATTTTTTTTTTTTTTTTTTIKKKRGQMELRLSFNNRRFE 490
Query: 453 QGVMSPH--MMSPHSPIPQSPLVRART 477
G+MSPH ++SPHSP+PQSPLV+ART
Sbjct: 491 DGLMSPHSILLSPHSPMPQSPLVKART 517
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Dianthus caryophyllus (taxid: 3570) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q06402|1A12_ARATH 1-aminocyclopropane-1-carboxylate synthase 2 OS=Arabidopsis thaliana GN=ACS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/485 (67%), Positives = 392/485 (80%), Gaps = 20/485 (4%)
Query: 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITK 61
+LSKIATNN HGE+S YFDGWKA+D++PFH ++NP G+IQ+GLAENQLC DLIKDW+ +
Sbjct: 10 AVLSKIATNNQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKE 69
Query: 62 NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121
NP ASICT EG+ F DIA FQDYHGL +FRQA+A FMGK RGGRVTFDP+R+VM GGAT
Sbjct: 70 NPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGRVTFDPERVVMSGGAT 129
Query: 122 GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA 181
GANE IMFCLA+PGD FL+PSPYYAAFDRDL WRTGV+I+PV C S+NFK+T +A E A
Sbjct: 130 GANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAAEWA 189
Query: 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241
Y++AQE++ +KGLI+TNPSNPLGT LD+DTL +LV F+ KNIHLV DEIYAATVF+
Sbjct: 190 YKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG 249
Query: 242 KFTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG 298
F SVAEV+ ++D N DLIHI+YSLSKDMGLPGFRVGIVYSFND+VV+C RKMSSFG
Sbjct: 250 DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFG 309
Query: 299 LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWM 358
LVSSQTQ +LASMLSDD+FVDNFL+E+S+RL RH FT G+++ I CL SNAGLF WM
Sbjct: 310 LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWM 369
Query: 359 DLRHLLKEK-TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVAL 417
DLRHLL+++ + E EI LW I++ VKLNVSPGSSF+CTEPGWFR+CFANMDDDTL VAL
Sbjct: 370 DLRHLLRDRNSFESEIELWHIIIDRVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVAL 429
Query: 418 NRIAAFVQQDK--------------ESEKPTKKRW-QQNLRVSFSSRIYEQGVMSPHMMS 462
RI FV ++K +++ K +W Q NLR+SF R+YE G+ SP +MS
Sbjct: 430 GRIQDFVSKNKNKIVEKASENDQVIQNKSAKKLKWTQTNLRLSF-RRLYEDGLSSPGIMS 488
Query: 463 PHSPI 467
PHSP+
Sbjct: 489 PHSPL 493
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| 6434142 | 477 | ACC synthase [Citrus sinensis] | 1.0 | 1.0 | 0.993 | 0.0 | |
| 3643540 | 459 | ACC synthase [Citrus sinensis] | 0.916 | 0.952 | 1.0 | 0.0 | |
| 261597136 | 478 | 1-aminocyclopropane-carboxylate synthase | 0.995 | 0.993 | 0.782 | 0.0 | |
| 255541704 | 482 | acc synthase, putative [Ricinus communis | 0.993 | 0.983 | 0.761 | 0.0 | |
| 147805722 | 481 | hypothetical protein VITISV_035777 [Viti | 0.993 | 0.985 | 0.762 | 0.0 | |
| 359489806 | 474 | PREDICTED: 1-aminocyclopropane-1-carboxy | 0.983 | 0.989 | 0.763 | 0.0 | |
| 7576444 | 486 | 1-aminocyclopropane-1-carboxylate syntha | 0.985 | 0.967 | 0.767 | 0.0 | |
| 122831047 | 493 | ACC synthase [Gossypium hirsutum] | 0.995 | 0.963 | 0.75 | 0.0 | |
| 224067938 | 486 | 1-aminocyclopropane-1-carboxylate [Popul | 0.985 | 0.967 | 0.762 | 0.0 | |
| 118500903 | 490 | 1-aminocyclopropane-1-carboxylic acid sy | 0.995 | 0.969 | 0.748 | 0.0 |
| >gi|6434142|emb|CAB60831.1| ACC synthase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/477 (99%), Positives = 474/477 (99%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT
Sbjct: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA
Sbjct: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA
Sbjct: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT SS
Sbjct: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATALSS 240
Query: 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT VNCGRKMSSFGLV
Sbjct: 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTAVNCGRKMSSFGLV 300
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL
Sbjct: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI
Sbjct: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
Query: 421 AAFVQQDKESEKPTKKRWQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRART 477
AAFVQQDKESEKPTKKRWQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRART
Sbjct: 421 AAFVQQDKESEKPTKKRWQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRART 477
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3643540|emb|CAA09477.1| ACC synthase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT
Sbjct: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA
Sbjct: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA
Sbjct: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS
Sbjct: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
Query: 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV
Sbjct: 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL
Sbjct: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI
Sbjct: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
Query: 421 AAFVQQDKESEKPTKKR 437
AAFVQQDKESEKPTKKR
Sbjct: 421 AAFVQQDKESEKPTKKR 437
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|261597136|gb|ACM48506.3| 1-aminocyclopropane-carboxylate synthase [Dimocarpus longan] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/478 (78%), Positives = 424/478 (88%), Gaps = 3/478 (0%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M LSK+AT++ HGE+S YF GWKA+DRNP+HPTQ+P GVIQ+GLAEN LCFDLIKDWI
Sbjct: 1 MAALSKMATSDQHGENSPYFYGWKAYDRNPYHPTQSPHGVIQMGLAENPLCFDLIKDWIV 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNP ASICT EGV+ FK+IAIFQDYHGL F+QAVAKFM K RGGRVTFDPDR+VM GGA
Sbjct: 61 KNPDASICTPEGVDKFKEIAIFQDYHGLQIFKQAVAKFMSKARGGRVTFDPDRVVMAGGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
TGANELI FC+A+PGDA+LVP+PYY AF RDL WRTGV+IVPV C SNNF++TR +LE
Sbjct: 121 TGANELITFCIADPGDAYLVPTPYYPAFGRDLGWRTGVKIVPVDCYSSNNFQVTRASLED 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AYE+A++A+INIKGL+ITNPSNPLGTTL+RDTLK+LVSFIN+ NIHLV DEIYAATVF+S
Sbjct: 181 AYEKARKANINIKGLLITNPSNPLGTTLERDTLKALVSFINETNIHLVVDEIYAATVFNS 240
Query: 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
PKF S+AEVI+EMDCNRD IH+IYSLSKDMG PGFRVGIVYS+ND VVNCG KMSSFGLV
Sbjct: 241 PKFISIAEVIEEMDCNRDNIHLIYSLSKDMGFPGFRVGIVYSYNDEVVNCGTKMSSFGLV 300
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQYLLASMLSDDEFVDNFL E+SKRLAKR+H FT GL+Q GI CL+SNAGLFFWM+L
Sbjct: 301 SSQTQYLLASMLSDDEFVDNFLAESSKRLAKRYHTFTMGLDQAGITCLRSNAGLFFWMNL 360
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
RHLLKE+T EGE+AL R I+ND KLNVSPGSSFQCTE GW+RVCFANMDD+T+QVAL RI
Sbjct: 361 RHLLKERTEEGEMALGRMIINDAKLNVSPGSSFQCTESGWYRVCFANMDDETVQVALTRI 420
Query: 421 AAFVQQDKES--EKPTKKRWQQ-NLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRA 475
FV++ +E+ E P KKRW+Q NLR+SFSSRIYE VMSPH MSPHSPIPQSPLVRA
Sbjct: 421 RDFVRRAEETSCEPPKKKRWKQNNLRLSFSSRIYEASVMSPHKMSPHSPIPQSPLVRA 478
|
Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541704|ref|XP_002511916.1| acc synthase, putative [Ricinus communis] gi|223549096|gb|EEF50585.1| acc synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/477 (76%), Positives = 415/477 (87%), Gaps = 3/477 (0%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LS+IATN GHGE+SAYFDGWKA+DRNPFHP NP GVIQ+GLAENQL FDLI+DWI +N
Sbjct: 6 LLSRIATNEGHGENSAYFDGWKAYDRNPFHPIDNPDGVIQMGLAENQLSFDLIRDWIKRN 65
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASIC EG FKD+A FQDYHGLPEFRQA+AKFMGK RG RVTFDPDRIVMGGGATG
Sbjct: 66 PEASICNLEGASKFKDVANFQDYHGLPEFRQAIAKFMGKVRGNRVTFDPDRIVMGGGATG 125
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE IMFCLA+PGDAFLVPSPYY AFDRDL+WRTGV+I+P+ C +NNF+IT+EALE AY
Sbjct: 126 ANETIMFCLADPGDAFLVPSPYYPAFDRDLTWRTGVKIIPIDCYSTNNFQITKEALEVAY 185
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
A+++ INIKGLI+ NPSNPLGT L+R TLK LVSFIN++NIHLV DEIYAAT+FSSP
Sbjct: 186 ATAKKSGINIKGLILANPSNPLGTILNRKTLKDLVSFINERNIHLVIDEIYAATIFSSPN 245
Query: 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSS 302
F S++E+I+EMDCNRDLIHI+YSLSKDMGLPGFRVGI+YS+ND VV C RKMSSFGLVSS
Sbjct: 246 FVSISEIIREMDCNRDLIHIVYSLSKDMGLPGFRVGIIYSYNDAVVCCARKMSSFGLVSS 305
Query: 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH 362
QTQYLLA+MLSD+ FVD+FL E+S+RL KRH FTKGLEQVGI CLKSNAGLF WMDL H
Sbjct: 306 QTQYLLAAMLSDEVFVDDFLAESSRRLKKRHSLFTKGLEQVGITCLKSNAGLFVWMDLHH 365
Query: 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
LL+E+T +GE+ALWR I+N+VKLNVSPGSSF C EPGWFRVCFANMDD+T+ AL RI A
Sbjct: 366 LLEEQTFDGEMALWRVIINEVKLNVSPGSSFHCKEPGWFRVCFANMDDETVATALKRIRA 425
Query: 423 FVQQDKES-EKPTK--KRWQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRAR 476
FV + KE EK TK KRWQ+NLR+SFS R +E+GVMSP +MSPHSPI SPLVRA+
Sbjct: 426 FVGKGKEEQEKSTKTSKRWQKNLRLSFSGRRFEEGVMSPRIMSPHSPIAHSPLVRAK 482
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147805722|emb|CAN69483.1| hypothetical protein VITISV_035777 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/479 (76%), Positives = 420/479 (87%), Gaps = 5/479 (1%)
Query: 4 LSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNP 63
LSKIATN+ HGE+S YFDGWKA+D NPFHPT+NP GVIQ+GLAENQL F+L+++WI KNP
Sbjct: 3 LSKIATNDMHGENSLYFDGWKAYDENPFHPTKNPNGVIQMGLAENQLSFNLMEEWILKNP 62
Query: 64 YASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGA 123
ASICT EG+ FKD+AIFQDYHGL +FR AVAKFM K RGGRV FDPDRIVM GGATGA
Sbjct: 63 KASICTPEGISQFKDVAIFQDYHGLTQFRNAVAKFMXKARGGRVKFDPDRIVMSGGATGA 122
Query: 124 NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183
+E+IMFCLA+PG+AFLVPSPYY AFDRDL WRT V+I PV C NNF+ITREALEAAY+
Sbjct: 123 DEMIMFCLADPGEAFLVPSPYYPAFDRDLRWRTQVKIRPVECTSXNNFQITREALEAAYQ 182
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
+AQE +I +KGLIITNPSNPLGTTL R+TL SLVSFIN+KNIHLV DEIYAATVFSSP+F
Sbjct: 183 KAQEENIKVKGLIITNPSNPLGTTLSRETLTSLVSFINEKNIHLVADEIYAATVFSSPRF 242
Query: 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ 303
SV+E++ E++CN +LIHI+YSLSKD+GLPGFRVGIVYS+ND VV+CGRKMSSFGLVSSQ
Sbjct: 243 VSVSEIMDEVECNPNLIHIVYSLSKDLGLPGFRVGIVYSYNDAVVSCGRKMSSFGLVSSQ 302
Query: 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL 363
TQ+LLASMLSDDEFVDNFL+E+S+RLAKRH FT+GL V INCLKSNAGLF WMDLRHL
Sbjct: 303 TQHLLASMLSDDEFVDNFLMESSRRLAKRHKTFTEGLVNVNINCLKSNAGLFVWMDLRHL 362
Query: 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
LKE TLEGEIALWR I+ DVKLNVSPGSSFQC+EPGWFRVCFANMD+DT++VAL RI F
Sbjct: 363 LKEPTLEGEIALWRVIIKDVKLNVSPGSSFQCSEPGWFRVCFANMDEDTVEVALKRIRTF 422
Query: 424 V-QQDKESEKPTK-KRWQQN-LRVSFSSRIYEQGVMSP--HMMSPHSPIPQSPLVRART 477
V + +E+E PTK KRW+ + LR+SFSSRIY++ VM+P MSPHSP+P SPLVRA T
Sbjct: 423 VGKGQEEAEAPTKAKRWKNSTLRLSFSSRIYDEAVMTPLTMSMSPHSPMPHSPLVRAXT 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489806|ref|XP_002276774.2| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/477 (76%), Positives = 419/477 (87%), Gaps = 8/477 (1%)
Query: 4 LSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNP 63
LSKIATN+ HGE+S YFDGWKA+D NPFHPT+NP GVIQ+GLAENQL F+L+++WI KNP
Sbjct: 3 LSKIATNDMHGENSLYFDGWKAYDENPFHPTKNPNGVIQMGLAENQLSFNLMEEWILKNP 62
Query: 64 YASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGA 123
ASICT EG+ FKD+AIFQDYHGL +FR AVAKFM K RGGRV FDPDRIVM GGATGA
Sbjct: 63 KASICTPEGISQFKDVAIFQDYHGLTQFRNAVAKFMAKARGGRVKFDPDRIVMSGGATGA 122
Query: 124 NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183
+E+IMFCLA+PG+AFLVPSPYY AFDRDL WRT V+I PV C +NNF+ITREALEAAY+
Sbjct: 123 DEMIMFCLADPGEAFLVPSPYYPAFDRDLRWRTQVKIRPVECTSANNFQITREALEAAYQ 182
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
+AQE +I +KGLIITNPSNPLGTTL R+TL SLVSFIN+KNIHLV DEIYAATVFSSP+F
Sbjct: 183 KAQEENIKVKGLIITNPSNPLGTTLSRETLTSLVSFINEKNIHLVADEIYAATVFSSPRF 242
Query: 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ 303
SV+E++ E++CN +LIHI+YSLSKD+GLPGFRVGIVYS+ND VV+CGRKMSSFGLVSSQ
Sbjct: 243 VSVSEIMDEVECNPNLIHIVYSLSKDLGLPGFRVGIVYSYNDAVVSCGRKMSSFGLVSSQ 302
Query: 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL 363
TQ+LLASMLSDDEFVDNFL+E+S+RLAKRH FT+GL V INCLKSNAGLF WMDLRHL
Sbjct: 303 TQHLLASMLSDDEFVDNFLMESSRRLAKRHKTFTEGLVNVNINCLKSNAGLFVWMDLRHL 362
Query: 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
LKE TLEGEIALWR I+ DVKLNVSPGSSFQC+EPGWFRVCFANMD+DT++VAL RI F
Sbjct: 363 LKEPTLEGEIALWRVIIKDVKLNVSPGSSFQCSEPGWFRVCFANMDEDTVEVALKRIRTF 422
Query: 424 V-QQDKESEKPTK-KRWQQN-LRVSFSSRIYEQGVMSPHMMSPHSPIPQSPLVRART 477
V + +E+E PTK KRW+ + LR+SFSSRIY++ V MSPHSP+P SPLVRART
Sbjct: 423 VGKGQEEAEAPTKAKRWKNSTLRLSFSSRIYDEAV-----MSPHSPMPHSPLVRART 474
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7576444|dbj|BAA94600.1| 1-aminocyclopropane-1-carboxylate synthase [Populus x canadensis] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/485 (76%), Positives = 420/485 (86%), Gaps = 15/485 (3%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSKIATN+ HGE+S YFDGWKA+D+NPFHPT NP GVIQ+GLAENQL D I DWI K+
Sbjct: 7 LLSKIATNDRHGENSPYFDGWKAYDKNPFHPTDNPDGVIQMGLAENQLSADSIIDWIKKH 66
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASIC EGV +FKDIA FQDYHGLPEFRQA+AKFMG+ RGGRVTFDPDRIVM GGATG
Sbjct: 67 PKASICNPEGVHMFKDIANFQDYHGLPEFRQAIAKFMGRVRGGRVTFDPDRIVMSGGATG 126
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANELIMFCLA+PGDAFLVPSPYY AF RDL WRTGVQIVPV CD SNNF+IT+ ALEAAY
Sbjct: 127 ANELIMFCLADPGDAFLVPSPYYPAFYRDLGWRTGVQIVPVDCDSSNNFQITKVALEAAY 186
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
++AQ+ IN+KGLIITNPSNPLGTTLDR+TLK L+SFIN+KNIH+VCDEIYAAT+FSS
Sbjct: 187 DKAQQDGINVKGLIITNPSNPLGTTLDRETLKCLLSFINEKNIHIVCDEIYAATIFSSQN 246
Query: 243 FTSVAEVIQE-MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVS 301
F SV+EVI+E MDCNRDLIHI+YSLSKDMGLPGFRVGIVYS+ND VVNCGRKMSSFGLVS
Sbjct: 247 FVSVSEVIEEVMDCNRDLIHIVYSLSKDMGLPGFRVGIVYSYNDAVVNCGRKMSSFGLVS 306
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
SQTQYLLASMLSD+EFV++FL E+SKRL KRH FTKGLEQ+GI+CL+S AGLF WM+LR
Sbjct: 307 SQTQYLLASMLSDEEFVEDFLAESSKRLKKRHGIFTKGLEQIGISCLESKAGLFVWMNLR 366
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
HLLKE+T +GE+ LWR IVNDVKLNVSPGSSF C EPGWFRVCFANMDD+TL+VAL RI
Sbjct: 367 HLLKEQTNDGEMELWRVIVNDVKLNVSPGSSFHCVEPGWFRVCFANMDDETLEVALKRIH 426
Query: 422 AFVQQDKESEK--------PTKKR-WQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPL 472
AFV + KE E P+K + W++NLR+SFSSRI+E+G+ SP MSPH SPL
Sbjct: 427 AFVGEQKERETLSTKTKDMPSKTKCWKKNLRLSFSSRIFEEGIGSPIAMSPH-----SPL 481
Query: 473 VRART 477
VRART
Sbjct: 482 VRART 486
|
Source: Populus x canadensis Species: Populus x canadensis Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|122831047|gb|ABM66813.1| ACC synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/484 (75%), Positives = 417/484 (86%), Gaps = 9/484 (1%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LS+IATN+ HGE+S YFDGWKA+D +PFHP NP GVIQ+GLAEN L FDLI+ WI +N
Sbjct: 10 LLSRIATNDRHGENSPYFDGWKAYDSSPFHPIHNPDGVIQMGLAENPLSFDLIEKWIREN 69
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICTAEG++ FK IAI+QDYHGL EFR+AVAKFMG+ G RVTFDP+RIVM GGATG
Sbjct: 70 PDASICTAEGLDKFKHIAIYQDYHGLREFREAVAKFMGRVGGSRVTFDPNRIVMSGGATG 129
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE ++FCLA+PGDAFLVPSPYYA F RDL WRTGV+IVPVHC SNNF+ITR ALE AY
Sbjct: 130 ANETVIFCLADPGDAFLVPSPYYAGFARDLRWRTGVEIVPVHCKSSNNFRITRAALEEAY 189
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E+AQ ++INIKG+IITNPSNPLGT LD++TL+S+VSF+ DKNIHLV DE YAATVFSSP+
Sbjct: 190 EKAQRSNINIKGVIITNPSNPLGTVLDKETLRSIVSFVTDKNIHLVSDEXYAATVFSSPR 249
Query: 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSS 302
F SVAEV+Q+MDCNRDLIHI+YSLSKDMG PGFRVGIVYSFND V NC RKMSSFGLVSS
Sbjct: 250 FISVAEVMQDMDCNRDLIHIVYSLSKDMGFPGFRVGIVYSFNDDVTNCARKMSSFGLVSS 309
Query: 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH 362
QTQ+LLASMLSDDEFV NFL E+SKRLAKRHH FTKGLE+VGI+ +KSNAGLFFWMD+R
Sbjct: 310 QTQFLLASMLSDDEFVGNFLRESSKRLAKRHHVFTKGLEEVGISTIKSNAGLFFWMDMRQ 369
Query: 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
LLKE+T + EI LWR I+N VKLNVSPGSSFQC+EPGWFRVCFANMDD T++VAL+RI
Sbjct: 370 LLKEQTTKAEIELWRVIINKVKLNVSPGSSFQCSEPGWFRVCFANMDDKTVEVALDRIRE 429
Query: 423 FVQQDKESEK-------PTKKRW-QQNLRVSF-SSRIYEQGVMSPHMMSPHSPIPQSPLV 473
FV Q KE K +RW +QNLR+SF SSR+Y++ +MSPHM+SPHSPIP SPLV
Sbjct: 430 FVLQGKEETKLEADKSQAQAQRWRKQNLRLSFSSSRLYDESLMSPHMISPHSPIPHSPLV 489
Query: 474 RART 477
RART
Sbjct: 490 RART 493
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067938|ref|XP_002302608.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] gi|222844334|gb|EEE81881.1| 1-aminocyclopropane-1-carboxylate [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/485 (76%), Positives = 420/485 (86%), Gaps = 15/485 (3%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSKIATN+ HGE+S YFDGWKA+D+NPFHPT NP GVIQ+GLAENQL D I DWI K+
Sbjct: 7 LLSKIATNDRHGENSPYFDGWKAYDKNPFHPTDNPDGVIQMGLAENQLSADSIIDWIKKH 66
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASIC EGV +FKDIA FQDYHGLPEFRQA+AKFMG+ RGGRVTFDPDRIVM GGATG
Sbjct: 67 PKASICNPEGVHMFKDIANFQDYHGLPEFRQAIAKFMGRVRGGRVTFDPDRIVMSGGATG 126
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANELIMFCLA+PGDAFLVPSPYY AF RDL WRTGVQIVPV CD SNNF+IT+ ALEAAY
Sbjct: 127 ANELIMFCLADPGDAFLVPSPYYPAFYRDLGWRTGVQIVPVDCDSSNNFQITKVALEAAY 186
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
++AQ+ IN+KGLIITNPSNPLGTTLDR+TLK L+SFIN+KNIH+VCDEIYAAT+FSS
Sbjct: 187 DKAQQDGINVKGLIITNPSNPLGTTLDRETLKCLLSFINEKNIHIVCDEIYAATIFSSQN 246
Query: 243 FTSVAEVIQE-MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVS 301
F SV+EVI+E +DCNRDLIHI+YSLSKDMGLPGFRVGIVYS+ND VVNCGRKMSSFGLVS
Sbjct: 247 FVSVSEVIEEVVDCNRDLIHIVYSLSKDMGLPGFRVGIVYSYNDAVVNCGRKMSSFGLVS 306
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
SQTQYLLASMLSD+EFV++FL E+SKRL KRH FTKGLEQ+GI+CL+S AGLF WM+LR
Sbjct: 307 SQTQYLLASMLSDEEFVEDFLAESSKRLKKRHGIFTKGLEQIGISCLESKAGLFVWMNLR 366
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
HLLKE+T +GE+ALWR IVNDVKLNVSPGSSF C EPGWFRVCFANMDD+TL+VAL RI
Sbjct: 367 HLLKEQTNDGEMALWRVIVNDVKLNVSPGSSFHCVEPGWFRVCFANMDDETLEVALKRIN 426
Query: 422 AFVQQDKESEK--------PTKKR-WQQNLRVSFSSRIYEQGVMSPHMMSPHSPIPQSPL 472
AFV + KE + P+K + W++NLR+SFSSRI+E+G+ SP MSPH SPL
Sbjct: 427 AFVGEQKERDTLSTKTKDMPSKTKCWKKNLRLSFSSRIFEEGIGSPIAMSPH-----SPL 481
Query: 473 VRART 477
V ART
Sbjct: 482 VLART 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118500903|gb|ABK97620.1| 1-aminocyclopropane-1-carboxylic acid synthase [Durio zibethinus] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/481 (74%), Positives = 421/481 (87%), Gaps = 6/481 (1%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LS+ ATN+GHGE+S YFDGWKA+D +P+H +QNP GVIQ+GLAENQLCFDLIK WI +N
Sbjct: 10 LLSRKATNDGHGENSPYFDGWKAYDSDPYHRSQNPNGVIQMGLAENQLCFDLIKKWILEN 69
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICTAEGV+ FKDIAI+QDYHGL EF +A+AKFMG+ G RVTFDP+RIVM GGATG
Sbjct: 70 PDASICTAEGVDKFKDIAIYQDYHGLKEFIEALAKFMGRVGGNRVTFDPNRIVMSGGATG 129
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE +MFCLA+PGDAFLVPSPYY AF RDL WRTG++IVPV C SNNF+ITR ALE AY
Sbjct: 130 ANETVMFCLADPGDAFLVPSPYYPAFARDLRWRTGLEIVPVDCKSSNNFRITRAALEEAY 189
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E+AQ ++IN+KG+II NPSNPLGT LDR+T++S+VSFIN++NIHLV DEIYAATVFSSP+
Sbjct: 190 EKAQRSNINVKGVIIANPSNPLGTILDRETMRSIVSFINEQNIHLVFDEIYAATVFSSPR 249
Query: 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV-S 301
F S+AE+IQ+MDCNRDLIHI+YSLSKDMG PGFRVGIVYSFND VVNC RKMSSFGLV S
Sbjct: 250 FISIAEIIQDMDCNRDLIHIVYSLSKDMGFPGFRVGIVYSFNDVVVNCARKMSSFGLVSS 309
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
SQTQYLLASMLSD++FV NFL E+SKRLAKRHH FTKGLEQVGI+CLKSNAGLFFWMD+R
Sbjct: 310 SQTQYLLASMLSDEDFVGNFLRESSKRLAKRHHVFTKGLEQVGISCLKSNAGLFFWMDMR 369
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
LLKE+T++GE+ LWR I+++VKLNVSPGSSFQC+EPGWFRVCFANMD +T++VAL+RI
Sbjct: 370 PLLKEQTVKGEMELWRVIIDEVKLNVSPGSSFQCSEPGWFRVCFANMDGETVEVALDRIR 429
Query: 422 AFVQQDKESEKP---TKKRWQ-QNLRVSF-SSRIYEQGVMSPHMMSPHSPIPQSPLVRAR 476
FV Q KE + T KRWQ +NLR+SF SSR+Y++ MSP M+SPHS IP SPLV A
Sbjct: 430 KFVLQGKEEDHAAPETSKRWQKKNLRLSFSSSRLYDESTMSPPMISPHSRIPHSPLVPAM 489
Query: 477 T 477
T
Sbjct: 490 T 490
|
Source: Durio zibethinus Species: Durio zibethinus Genus: Durio Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| TAIR|locus:2082817 | 488 | ACS1 "ACC synthase 1" [Arabido | 0.974 | 0.952 | 0.681 | 1.2e-177 | |
| TAIR|locus:2128298 | 495 | ACS6 "1-aminocyclopropane-1-ca | 0.989 | 0.953 | 0.654 | 2.4e-170 | |
| TAIR|locus:2025361 | 496 | ACS2 "1-amino-cyclopropane-1-c | 0.893 | 0.858 | 0.711 | 6.4e-170 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 0.922 | 0.938 | 0.564 | 7.8e-142 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 0.943 | 0.957 | 0.551 | 3.4e-141 | |
| UNIPROTKB|A5BL65 | 469 | VITISV_037836 "Putative unchar | 0.943 | 0.959 | 0.554 | 4.3e-141 | |
| UNIPROTKB|Q43165 | 465 | ST ACS1A "Amino cyclopropane c | 0.943 | 0.967 | 0.538 | 8.9e-141 | |
| UNIPROTKB|Q9SXN8 | 473 | pPPACS1 "1-aminocyclopropane-1 | 0.888 | 0.896 | 0.559 | 6.3e-140 | |
| TAIR|locus:2169980 | 470 | ACS5 "ACC synthase 5" [Arabido | 0.884 | 0.897 | 0.570 | 8e-140 | |
| UNIPROTKB|O24544 | 472 | VR-ACS6 "1-aminocyclopropane-1 | 0.945 | 0.955 | 0.535 | 1e-139 |
| TAIR|locus:2082817 ACS1 "ACC synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
Identities = 332/487 (68%), Positives = 395/487 (81%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSK+A ++ HGE S YF GWKA+D NPFHPT NP GVIQ+GLAENQLC DLIK+WI +N
Sbjct: 10 LLSKLALSDKHGEASPYFHGWKAYDNNPFHPTHNPQGVIQMGLAENQLCSDLIKEWIKEN 69
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICTAEG++ F DIA+FQDYHGL +FRQA+A FM + RGGRV F+ +R+VM GGATG
Sbjct: 70 PQASICTAEGIDSFSDIAVFQDYHGLKQFRQAIATFMERARGGRVRFEAERVVMSGGATG 129
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE IMFCLA+PGDAFLVP+PYYAAFDRDL WRTGV+I+PV C SNNF+IT++ALE+AY
Sbjct: 130 ANETIMFCLADPGDAFLVPTPYYAAFDRDLRWRTGVRIIPVECSSSNNFQITKQALESAY 189
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
+AQE I IKGLII SNPLGT+LDR+TL+SLVSFINDK IHLVCDEIYAATVF+ P
Sbjct: 190 LKAQETGIKIKGLII---SNPLGTSLDRETLESLVSFINDKQIHLVCDEIYAATVFAEPG 246
Query: 243 FTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVS 301
F SVAE+IQEM NRDLIHI+YSLSKDMGLPGFRVG+VYS+ND VV+C R+MSSFGLVS
Sbjct: 247 FISVAEIIQEMYYVNRDLIHIVYSLSKDMGLPGFRVGVVYSYNDVVVSCARRMSSFGLVS 306
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
SQTQ LA+MLSD FVDNFLVE SKR+AKRHH FT+GLE++GI+CL+SNAGLF MDLR
Sbjct: 307 SQTQSFLAAMLSDQSFVDNFLVEVSKRVAKRHHMFTEGLEEMGISCLRSNAGLFVLMDLR 366
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
H+LK++T + E+ALWR I+N VK+NVSPGSSF C+EPGWFRVCFANMD+DTLQ+AL RI
Sbjct: 367 HMLKDQTFDSEMALWRVIINKVKINVSPGSSFHCSEPGWFRVCFANMDEDTLQIALERIK 426
Query: 422 AFVQQDK-----------ESEKPTKKR--WQQNLRVSFSSRIYEQGVXXXXXXXXXXXIP 468
FV D+ +++ KKR +Q+NL++S SS YE+ V P
Sbjct: 427 DFVVGDRANKNKNCNCICNNKRENKKRKSFQKNLKLSLSSMRYEEHVRSPKLMS-----P 481
Query: 469 QSPLVRA 475
SPL+RA
Sbjct: 482 HSPLLRA 488
|
|
| TAIR|locus:2128298 ACS6 "1-aminocyclopropane-1-carboxylic acid (acc) synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
Identities = 320/489 (65%), Positives = 374/489 (76%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
+ +LSKIA+ +GHGE+S+YFDGWKA++ NPFHP P GVIQ+GLAENQLC DL++ W+
Sbjct: 12 LNLLSKIASGDGHGENSSYFDGWKAYEENPFHPIDRPDGVIQMGLAENQLCGDLMRKWVL 71
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
K+P ASICT+EGV F DIAIFQDYHGLPEFRQAVAKFM K R +V FDPDRIVM GGA
Sbjct: 72 KHPEASICTSEGVNQFSDIAIFQDYHGLPEFRQAVAKFMEKTRNNKVKFDPDRIVMSGGA 131
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
TGA+E + FCLANPGD FLVP+PYY FDRDL WRTGV +VPV C SN FKIT EALEA
Sbjct: 132 TGAHETVAFCLANPGDGFLVPTPYYPGFDRDLRWRTGVNLVPVTCHSSNGFKITVEALEA 191
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AYE A++++I +KGL++TNPSNPLGTTLDR+ LKSLV+F NDK IHL+ DEIYAAT F
Sbjct: 192 AYENARKSNIPVKGLLVTNPSNPLGTTLDRECLKSLVNFTNDKGIHLIADEIYAATTFGQ 251
Query: 241 PKFTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
+F SVAEVI+E+ DCNRDLIHI+YSLSKDMGLPG RVGIVYS+ND VV RKMSSFGL
Sbjct: 252 SEFISVAEVIEEIEDCNRDLIHIVYSLSKDMGLPGLRVGIVYSYNDRVVQIARKMSSFGL 311
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VSSQTQ+L+A MLSD+EFVD F+ E+ RLA RH T GL+ +GI LK+ AGLF WMD
Sbjct: 312 VSSQTQHLIAKMLSDEEFVDEFIRESKLRLAARHAEITTGLDGLGIGWLKAKAGLFLWMD 371
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
LR+LLK T + E LWR IV+ VKLNVSPG SF C EPGWFRVCFANMD T++ AL R
Sbjct: 372 LRNLLKTATFDSETELWRVIVHQVKLNVSPGGSFHCHEPGWFRVCFANMDHKTMETALER 431
Query: 420 IAAFVQQDKESEKPT----------KKRWQQNLRVSFS-SRIYEQGVXXXXXXXXXXXIP 468
I F Q +E KP KK WQ NLR+SFS +R ++ G +P
Sbjct: 432 IRVFTSQLEEETKPMAATTMMAKKKKKCWQSNLRLSFSDTRRFDDGFFSPHSP-----VP 486
Query: 469 QSPLVRART 477
SPLVRA+T
Sbjct: 487 PSPLVRAQT 495
|
|
| TAIR|locus:2025361 ACS2 "1-amino-cyclopropane-1-carboxylate synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
Identities = 306/430 (71%), Positives = 363/430 (84%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSKIATNN HGE+S YFDGWKA+D++PFH ++NP G+IQ+GLAENQLC DLIKDW+ +N
Sbjct: 11 VLSKIATNNQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKEN 70
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P ASICT EG+ F DIA FQDYHGL +FRQA+A FMGK RGGRVTFDP+R+VM GGATG
Sbjct: 71 PEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGRVTFDPERVVMSGGATG 130
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE IMFCLA+PGD FL+PSPYYAAFDRDL WRTGV+I+PV C S+NFK+T +A E AY
Sbjct: 131 ANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAAEWAY 190
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
++AQE++ +KGLI+TNPSNPLGT LD+DTL +LV F+ KNIHLV DEIYAATVF+
Sbjct: 191 KKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGD 250
Query: 243 FTSVAEVIQEMDC---NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
F SVAEV+ ++D N DLIHI+YSLSKDMGLPGFRVGIVYSFND+VV+C RKMSSFGL
Sbjct: 251 FVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGL 310
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VSSQTQ +LASMLSDD+FVDNFL+E+S+RL RH FT G+++ I CL SNAGLF WMD
Sbjct: 311 VSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMD 370
Query: 360 LRHLLKEK-TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALN 418
LRHLL+++ + E EI LW I++ VKLNVSPGSSF+CTEPGWFR+CFANMDDDTL VAL
Sbjct: 371 LRHLLRDRNSFESEIELWHIIIDRVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALG 430
Query: 419 RIAAFVQQDK 428
RI FV ++K
Sbjct: 431 RIQDFVSKNK 440
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 253/448 (56%), Positives = 337/448 (75%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
MG+LSK A+ N HG+DS+YF GW+ +++NP+ +NP G+IQ+GLAENQL FDLI+ W+
Sbjct: 1 MGLLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLA 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNP A+ EG +F+++A+FQDYHGLP F+ A+A FM + RG RV+F+P+++V+ GA
Sbjct: 61 KNPDAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T ANE +MFCLA+PGDAFL+P+PYY FDRDL WRTG +IVP+ C +N F+IT+ ALE
Sbjct: 121 TPANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEE 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AYE+AQ+ ++ +KG++ITNPSNPLGTT R L L+ FI+ K IHL+ DEIY+ TVF++
Sbjct: 181 AYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTN 240
Query: 241 PKFTSVAEVIQEMDC-NRDL---IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 296
P F SV EV+++ N D+ +HI+YSLSKD+GLPGFRVG++YS +D VV+ KMSS
Sbjct: 241 PGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSS 300
Query: 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356
FGL+SSQTQYLL+++LSD F N+L E RL RH GLE GI CLKSNAGLF
Sbjct: 301 FGLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFC 360
Query: 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416
W+D+RHLLK T E EI LW+ IV +VKLN+SPGSS C EPGWFRVCFAN+ ++TL+VA
Sbjct: 361 WVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVA 420
Query: 417 LNRIAAFVQQDKESEKPTKKRWQQNLRV 444
L+R+ FV + PT++ ++ R+
Sbjct: 421 LDRLKRFV----DGPSPTRRSQSEHQRL 444
|
|
| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
Identities = 257/466 (55%), Positives = 339/466 (72%)
Query: 4 LSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNP 63
LS+ T+N HG+DS+YF GW+ +++NP+ +NP G+IQ+GLAENQLCFDLI+ W+ KNP
Sbjct: 4 LSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLAKNP 63
Query: 64 YASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGA 123
A+ +G +FK++A+FQDYHGLPEF++A+A+FM + RG RVTFDP +IV+ G+T A
Sbjct: 64 DAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGSTSA 123
Query: 124 NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183
NE +MFCLA PGDAFL+P+PYY FDRDL WRTG +IVP+HC SN F+IT AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
+AQ+ + +KG+++TNPSNPLGT L R L LV FI KNIHL+ DEIY+ TVF +F
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGFEQF 243
Query: 244 TSVAEVIQEMDC-NRDL---IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
SV +V+++ + N ++ +HI+YSLSKD+GLPGFRVG +YS ++ VV+ KMSSFGL
Sbjct: 244 VSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGL 303
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VSSQTQYLL+++LSD +F +L E KRL R GLE GI CLKSNAGLF W+D
Sbjct: 304 VSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFCWVD 363
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
+RHLL T E E+ LW+ IV DVKLN+SPGSS CTEPGWFRVCFANM +DTL +A+ R
Sbjct: 364 MRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMKR 423
Query: 420 IAAFVQQ-------DKESE---KPTKKRWQQN--LRVSFSSRIYEQ 453
+ +V+ K S K +KR N RVS++ R+ ++
Sbjct: 424 LKEYVESTDSRRVISKSSHDRIKSLRKRTVSNWVFRVSWTDRVPDE 469
|
|
| UNIPROTKB|A5BL65 VITISV_037836 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 254/458 (55%), Positives = 337/458 (73%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M +LS+ AT N HG+DS YF GW+ +++N +H +NP G+IQ+GLAENQL FDL++ W+
Sbjct: 1 MKMLSRKATFNSHGQDSEYFLGWEEYEKNAYHEVENPSGIIQMGLAENQLSFDLLESWLA 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
+NP A+ +G +F+++A+FQDYHGLP F++A+ +FM + RG +V+FD +++V+ GA
Sbjct: 61 QNPDAAGFKRDGESIFRELALFQDYHGLPAFKKALVEFMSEIRGNKVSFDQNKLVLTAGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T ANE +MFCLANPG+AFL+P+PYY FDRDL WRTGV+IVP+ C SN F+IT ALE
Sbjct: 121 TSANETLMFCLANPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIQCSSSNGFQITESALEE 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AY++AQ+ S+ +KG++ITNPSNPLGTT RD L LV+FI K IHL+ DEIY+ TVF S
Sbjct: 181 AYQQAQKRSLKVKGVLITNPSNPLGTTTSRDELNLLVNFITAKGIHLISDEIYSGTVFDS 240
Query: 241 PKFTSVAEVIQEMD-CNRDL---IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 296
P F S+ EV+ + + N ++ +HI+YSLSKD+GLPGFRVG +YS + VV+ KMSS
Sbjct: 241 PGFVSIMEVLMDRNYMNTEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDVAVVSAATKMSS 300
Query: 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356
FGLVSSQTQYLL+ MLSD +F N++ E KRL +RH GL+ GI+CLKSNAGLF
Sbjct: 301 FGLVSSQTQYLLSVMLSDKKFTKNYVSENQKRLKQRHQMLISGLQNAGIDCLKSNAGLFC 360
Query: 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416
W+D+RHLL T E E+ LW+ I+ DV+LN+SPGSS CTEPGWFRVCFANM +DTL +A
Sbjct: 361 WVDMRHLLSSNTFEAEMELWKKILYDVRLNISPGSSCHCTEPGWFRVCFANMSEDTLNLA 420
Query: 417 LNRIAAFVQQDKESEKPTKKRWQQNL---RVSFSSRIY 451
L RI AFV + + R Q N R SF+ ++
Sbjct: 421 LQRIKAFVDSSTTTNN-NQSRHQSNKNQRRKSFTKWVF 457
|
|
| UNIPROTKB|Q43165 ST ACS1A "Amino cyclopropane carboxylate acid synthase" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 245/455 (53%), Positives = 341/455 (74%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M +LSK A N HG+DS+YF GW+ +++NP+ T+NP G+IQ+GLAENQL FDL++ W+T
Sbjct: 1 MKLLSKKAMCNSHGQDSSYFLGWEEYEKNPYDETRNPKGIIQMGLAENQLSFDLLESWLT 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
+NP A+ G +F+++A+FQDYHGLP F+ A+ +FM + RG +V+FD +++V+ GA
Sbjct: 61 QNPDAAAFKRNGNSIFRELALFQDYHGLPAFKDALVQFMSEIRGNKVSFDSNKLVLTAGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T ANE +MFCLA+PGDAFL+P+PYY FDRDL WRTG +IVP+ C SN F+IT ALE
Sbjct: 121 TSANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCTSSNGFRITESALEE 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AY+ A+ ++ +KG+++TNPSNPLG+TL + L+ L++F++ K IHL+ DEIY+ TVF+S
Sbjct: 181 AYKEAERRNLRVKGVLVTNPSNPLGSTLTKKELQLLLTFVSTKQIHLISDEIYSGTVFNS 240
Query: 241 PKFTSVAEVIQEMDCNR----DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 296
PKF SV EV+ E + D +HI+YSLSKD+GLPGFRVG +YS +D +V+ KMSS
Sbjct: 241 PKFVSVMEVLIENNYMYTEVWDRVHIVYSLSKDLGLPGFRVGAIYSNDDMIVSAATKMSS 300
Query: 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356
FGL+SSQTQYLL+++LSD +F+ N++ E KRL KRH GL+Q+GI CL+SNAGLF
Sbjct: 301 FGLISSQTQYLLSALLSDQKFMKNYVSENQKRLKKRHEMLVGGLKQIGIRCLESNAGLFC 360
Query: 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416
W+D+RHLL T +GE+ LW+ IV +V LN+SPGSS CTEPGWFR CFANM +DTL +A
Sbjct: 361 WVDMRHLLSSNTFDGEMELWKKIVYEVGLNISPGSSCHCTEPGWFRACFANMSEDTLNIA 420
Query: 417 LNRIAAFVQQDKESEKPTKKRWQQNLRVSFSSRIY 451
+ R+ AFV ++++ + + N + SFS ++
Sbjct: 421 IQRLKAFVDS-RDNKDDIQNQKHSNKKKSFSKWVF 454
|
|
| UNIPROTKB|Q9SXN8 pPPACS1 "1-aminocyclopropane-1-carboxylic acid synthase" [Pyrus pyrifolia (taxid:3767)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 240/429 (55%), Positives = 324/429 (75%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M +LS+ AT N HG+DS+YF GW+ +++NP+H N G+IQ+GLAENQLCFDL++ W+
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNP A+ G +F ++A+FQDYHGLP F++A+ FM + RG +VTFDP+ +V+ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T ANE +FCLA+PG+AFL+P+PYY FDRDL WRTGV+IVP+HC SN F+IT ALE
Sbjct: 121 TSANETFIFCLADPGEAFLIPTPYYPGFDRDLKWRTGVEIVPIHCTNSNGFQITETALEE 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AY+ A++ ++ +KG+++TNPSNPLGTT+ R+ L L+SF+ DK IHL+ DEIY+ T FSS
Sbjct: 181 AYQEAEKCNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 241 PKFTSVAEVIQEMDCNRDL-----IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS 295
P F SV EV+++ +C+ + +H++YSLSKD+GLPGFRVG +YS +D VV KMS
Sbjct: 241 PSFISVMEVLKDRNCDENFEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 296 SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355
SFGLVSSQTQ+LL++MLSD + N++ E KRL +R N GL++ GI+CL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAGLF 360
Query: 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQV 415
W+D+RHLL+ T E E+ LW+ IV +V LN+SPGSS CTEPGWFRVCFAN+ + TL +
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 416 ALNRIAAFV 424
A+ R+ AFV
Sbjct: 421 AMQRLKAFV 429
|
|
| TAIR|locus:2169980 ACS5 "ACC synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 243/426 (57%), Positives = 319/426 (74%)
Query: 4 LSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNP 63
LS T+NGHG+DS+YF GW+ +++NP+ +NP G+IQ+GLAENQLCFDLI+ W+TKNP
Sbjct: 4 LSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQLCFDLIESWLTKNP 63
Query: 64 YASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGA 123
A+ G +F+++A+FQDYHG+PEF++A+A+FM + RG RVTFDP +IV+ G+T A
Sbjct: 64 DAASLKRNGQSIFRELALFQDYHGMPEFKKAMAEFMEEIRGNRVTFDPKKIVLAAGSTSA 123
Query: 124 NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183
NE +MFCLA PGDAFL+P+PYY FDRDL WRTG +IVP+HC SN F+IT AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
+AQ+ + +KG+++TNPSNPLGT L R L LV FI KNIHL+ DEIY+ T+F +F
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGFEQF 243
Query: 244 TSVAEVIQEMDCN----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
SV +V+++ +H++YSLSKD+GLPGFRVG +YS ++ +V+ KMSSFGL
Sbjct: 244 ISVMDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVGAIYSNDEMIVSAATKMSSFGL 303
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VSSQTQYLL+++LSD +F +L E KRL R GLE GI CL+SNAGLF W+D
Sbjct: 304 VSSQTQYLLSALLSDKKFTSQYLEENQKRLKSRQRRLVSGLESAGITCLRSNAGLFCWVD 363
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
+RHLL T E E+ LW+ IV +VKLN+SPGSS CTEPGWFRVCFANM +DTL +AL R
Sbjct: 364 MRHLLDTNTFEAELDLWKKIVYNVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLALKR 423
Query: 420 IAAFVQ 425
+ FV+
Sbjct: 424 LKTFVE 429
|
|
| UNIPROTKB|O24544 VR-ACS6 "1-aminocyclopropane-1-carboxylate synthase" [Vigna radiata var. radiata (taxid:3916)] | Back alignment and assigned GO terms |
|---|
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 246/459 (53%), Positives = 336/459 (73%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M LS AT N HG+DS+YF GW+ +++NP+ NP G+IQ+GLAENQL FDL++ W+
Sbjct: 1 MKFLSTKATCNSHGQDSSYFLGWQEYEKNPYDEVLNPEGIIQMGLAENQLSFDLLESWLA 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNP + ++G +F+++A+FQDYHGLP F++A+ FM + RG +VTFDP+ IV+ G+
Sbjct: 61 KNPDVAGFKSDGKSIFRELALFQDYHGLPSFKKALVDFMAEIRGNKVTFDPNHIVLTAGS 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T AN+ +MFCLA GDAFL+P+PYY FDRDL WRTGV+IVP+ C SNNF+IT AL+
Sbjct: 121 TSANQTLMFCLAELGDAFLLPTPYYPGFDRDLKWRTGVEIVPIQCTSSNNFQITEAALKQ 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AY+ A++ ++ +KG+++TNPSNPLGTT+ R L LV FI DKN+HL+ DEIY+ TV++S
Sbjct: 181 AYQEAKKRNLRVKGVLVTNPSNPLGTTMSRSELNLLVDFIKDKNMHLISDEIYSGTVYNS 240
Query: 241 PKFTSVAEVIQEM----DCNR---DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK 293
P F S+ E++++ DC D +HI+YSLSKD+GLPGFRVG +YS N+ VV K
Sbjct: 241 PGFVSIMEILKDRNDLKDCGANVWDRVHIVYSLSKDLGLPGFRVGAIYSENEVVVAAATK 300
Query: 294 MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-A 352
MSSFGLVSSQTQYLL++ML D +F N++ E KRL +R N GL++ GI+CLK+N A
Sbjct: 301 MSSFGLVSSQTQYLLSAMLGDKKFTKNYISENLKRLKRRQRNLVSGLQKAGISCLKTNNA 360
Query: 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDT 412
GLF W+D+RHLL T E E+ LW+ I+ +V+LN+SPGSS CTEPGWFR+CFANM ++T
Sbjct: 361 GLFCWVDMRHLLHSNTFEAEMELWKKILYEVRLNISPGSSCHCTEPGWFRMCFANMSEET 420
Query: 413 LQVALNRIAAFVQQDKESEKPTKKRWQQNLRVSFSSRIY 451
L +A+ R+ FVQ+ T KR Q + R S S+ ++
Sbjct: 421 LNLAMKRLKTFVQESNHDNGCTAKRVQSSRRKSLSNWVF 459
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q00379 | 1A12_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.6776 | 0.9874 | 0.9534 | N/A | no |
| Q9MB95 | 1A11_PRUMU | 4, ., 4, ., 1, ., 1, 4 | 0.7407 | 0.9853 | 0.9552 | N/A | no |
| Q00257 | 1A12_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.5651 | 0.8930 | 0.8968 | N/A | no |
| P23599 | 1A11_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.6750 | 0.9769 | 0.9452 | N/A | no |
| P37821 | 1A1C_MALDO | 4, ., 4, ., 1, ., 1, 4 | 0.5522 | 0.8930 | 0.9006 | N/A | no |
| Q06429 | 1A11_ARATH | No assigned EC number | 0.6951 | 0.9685 | 0.9467 | yes | no |
| A2XLL2 | 1A11_ORYSI | 4, ., 4, ., 1, ., 1, 4 | 0.5488 | 0.8846 | 0.8665 | N/A | no |
| P18485 | 1A12_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.6984 | 0.9475 | 0.9319 | N/A | no |
| P27486 | 1A1C_DIACA | 4, ., 4, ., 1, ., 1, 4 | 0.6390 | 0.9937 | 0.9168 | N/A | no |
| P23279 | 1A11_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.6729 | 0.9769 | 0.9452 | N/A | no |
| P29535 | 1A14_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.6761 | 0.8846 | 0.8865 | N/A | no |
| Q42881 | 1A13_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5392 | 0.9454 | 0.9616 | N/A | no |
| Q07262 | 1A1C_TOBAC | 4, ., 4, ., 1, ., 1, 4 | 0.6948 | 0.9874 | 0.9592 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.6.1.66 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 4.4.1.14 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 477 | |||
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-115 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 2e-79 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-62 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 3e-57 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 9e-40 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 3e-30 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 6e-28 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 6e-28 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 7e-28 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 7e-27 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 4e-26 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 4e-26 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 2e-24 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 9e-22 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 1e-21 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 3e-21 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 6e-21 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 1e-20 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 1e-20 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 1e-20 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 5e-20 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 2e-19 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 1e-18 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 1e-17 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 1e-16 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 2e-16 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 2e-16 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 2e-16 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 3e-16 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 3e-16 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 4e-16 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 7e-16 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 1e-15 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 2e-15 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 3e-15 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 5e-15 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 1e-14 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 3e-14 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 1e-13 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 2e-13 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 4e-13 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 5e-13 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 8e-13 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 9e-13 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 9e-13 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 6e-12 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 9e-12 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 1e-11 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 1e-11 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 2e-11 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 3e-11 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 6e-11 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 2e-10 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 9e-10 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 1e-09 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-09 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 3e-09 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 3e-09 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 6e-09 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 6e-09 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 8e-09 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 1e-08 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 2e-08 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 3e-08 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 3e-08 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 9e-08 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 4e-07 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 5e-07 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 7e-07 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 1e-06 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 1e-05 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 2e-05 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 2e-05 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 3e-05 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 3e-05 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 4e-05 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 8e-05 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 1e-04 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 2e-04 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 2e-04 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 2e-04 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-04 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 4e-04 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 5e-04 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 5e-04 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 6e-04 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 697 bits (1801), Expect = 0.0
Identities = 324/485 (66%), Positives = 392/485 (80%), Gaps = 20/485 (4%)
Query: 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITK 61
ILSKIATN+ HGE+S YFDGWKA+D++PFH ++NP G+IQ+GLAENQLC DLIKDW+ +
Sbjct: 10 AILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKE 69
Query: 62 NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121
NP ASICT EG+ F DIA FQDYHGL +FRQA+A FMGK RGG+VTFDP+R+VM GGAT
Sbjct: 70 NPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGAT 129
Query: 122 GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA 181
GANE IMFCLA+PGD FL+PSPYYAAFDRDL WRTGV+I+PV C S+NFK+T +A + A
Sbjct: 130 GANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWA 189
Query: 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241
Y++AQE++ +KGLI+TNPSNPLGT LD+DTL +LV F+ KNIHLV DEIYAATVF+
Sbjct: 190 YKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG 249
Query: 242 KFTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG 298
F SVAEV+ ++D N DLIHI+YSLSKDMGLPGFRVGIVYSFND+VV+C RKMSSFG
Sbjct: 250 DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFG 309
Query: 299 LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWM 358
LVSSQTQ +LASMLSDD+FVDNFL+E+S+RL RH FT G+++ I CL SNAGLF WM
Sbjct: 310 LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWM 369
Query: 359 DLRHLLKEK-TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVAL 417
DLRHLL+++ + E EI LW I++ VKLNVSPGSSF+CTEPGWFR+CFANMDDDTL VAL
Sbjct: 370 DLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVAL 429
Query: 418 NRIAAFVQQDK--------------ESEKPTKKRW-QQNLRVSFSSRIYEQGVMSPHMMS 462
RI FV ++K +++ K +W Q NLR+SF R+YE G+ SP +MS
Sbjct: 430 GRIQDFVSKNKNKIVEKASENDQVIQNKNAKKLKWRQSNLRLSF-RRLYEDGLSSPGIMS 488
Query: 463 PHSPI 467
PHSP+
Sbjct: 489 PHSPL 493
|
Length = 496 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 683 bits (1764), Expect = 0.0
Identities = 259/468 (55%), Positives = 340/468 (72%), Gaps = 15/468 (3%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M +LS+ AT N HG+DS+YF GW+ +++NP+ +NP G+IQ+GLAENQL FDLI+ W+
Sbjct: 1 MKLLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLA 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNP A+ G +F+++A+FQDYHGLP F+ A+A+FM + RG +VTFDP+++V+ GA
Sbjct: 61 KNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T ANE +MFCLA PGDAFL+P+PYY FDRDL WRTGV+IVP+HC SN F+IT ALE
Sbjct: 121 TSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEE 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AY++AQ+ ++ +KG++ITNPSNPLGTT R L LV FI KNIHL+ DEIY+ TVF S
Sbjct: 181 AYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240
Query: 241 PKFTSVAEVIQEMDC-NRDL---IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 296
P F SV EV+++ N D+ +HI+YSLSKD+GLPGFRVG +YS ++ VV+ KMSS
Sbjct: 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
Query: 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356
FGLVSSQTQYLL+++LSD +F N+L E KRL +R GLE GI CLKSNAGLF
Sbjct: 301 FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFC 360
Query: 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416
W+D+RHLLK T E E+ LW+ IV +VKLN+SPGSS CTEPGWFRVCFANM ++TL +A
Sbjct: 361 WVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLA 420
Query: 417 LNRIAAFV---------QQDKESEKPTKKRWQQN--LRVSFSSRIYEQ 453
+ R+ +FV + + K +++ R+SF R E+
Sbjct: 421 MKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKWVFRLSFHDREPEE 468
|
Length = 468 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 623 bits (1608), Expect = 0.0
Identities = 250/432 (57%), Positives = 330/432 (76%), Gaps = 4/432 (0%)
Query: 4 LSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNP 63
LSK+A + HGEDS YF GWKA+D +P+ + NP GVIQ+GLAENQ+ FDL+++++ ++P
Sbjct: 13 LSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHP 72
Query: 64 YASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGA 123
AS +G F++ A+FQDYHGL FRQA+A FM + RGG+ FDPDRIV+ GAT A
Sbjct: 73 EASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAA 132
Query: 124 NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183
NEL+ F LA+PGDA LVP+PYY FDRDL WRTGV+IVP+HCD SNNF++T +ALEAAY+
Sbjct: 133 NELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQ 192
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
A+ A+I ++G++ITNPSNPLG T+ R L+ ++ F+ KNIHLV DEIY+ +VFS+ +F
Sbjct: 193 EAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEF 252
Query: 244 TSVAEVIQEMDCNRDL---IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV 300
SVAE+++ + + +HI+YSLSKD+GLPGFRVG +YS+ND VV R+MSSF LV
Sbjct: 253 VSVAEIVEARG-YKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLV 311
Query: 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
SSQTQ+LLASMLSD+EF +N++ +RL KR+ +GL + GI CLK NAGLF WM+L
Sbjct: 312 SSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNL 371
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
LL+ T EGE+ALW +I+ +VKLN+SPGSS C+EPGWFRVCFANM +DTL+VAL RI
Sbjct: 372 SPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRI 431
Query: 421 AAFVQQDKESEK 432
F+ + K +
Sbjct: 432 HRFMDRRKTASS 443
|
Length = 447 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-115
Identities = 117/385 (30%), Positives = 179/385 (46%), Gaps = 32/385 (8%)
Query: 40 VIQLGLAENQLCFD--LIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAK 97
++ L N+ D + A ++ GLPE R+A+AK
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDALA--------GGTRNLYGPTDGLPELREALAK 52
Query: 98 FMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWR 155
F+G R + D + +V G GA E ++F L NPGDA LVP+P Y ++ R
Sbjct: 53 FLG--RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA 110
Query: 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKS 215
G ++V SN+F + +ALEAA + A E + K ++ T+P NP GT + L+
Sbjct: 111 -GGEVVRYPLYSSNDFHLDFDALEAALKEATEGN---KVVLHTSPHNPTGTVATLEELEK 166
Query: 216 LVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275
L+ + NI L+ DE YA VF S + ++ E + ++ S SK GL G+
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAE----GPNLLVVGSFSKAFGLAGW 222
Query: 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335
RVG + N V++ RK++ S+ Q A+ LSD V + L E +R+ +R
Sbjct: 223 RVGYILG-NAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDY 281
Query: 336 FTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395
GLE G++ L S AG F L AL + ++ +V + V+PGSSF
Sbjct: 282 LRDGLEAAGLSVLPSQAGFFLLTGLDPEAAL-------ALAQVLLEEVGVYVTPGSSF-- 332
Query: 396 TEPGWFRVCFANMDDDTLQVALNRI 420
PGW R+ A ++ L+ L I
Sbjct: 333 GGPGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 2e-79
Identities = 97/146 (66%), Positives = 118/146 (80%), Gaps = 1/146 (0%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LSK+A + HGE S YF GWKA+D NPF NP G+IQ+GLAENQLC DLI++WI +N
Sbjct: 8 LLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEEN 67
Query: 63 PYASICTAEG-VEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121
P+A ICTAEG ++ FKDIA+FQDYHGL FR+A+A FM + RGGRV FD D IV+ GAT
Sbjct: 68 PHADICTAEGTIDSFKDIALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGAT 127
Query: 122 GANELIMFCLANPGDAFLVPSPYYAA 147
ANE+IMFC+A+PGDAFLVP+PYYAA
Sbjct: 128 AANEIIMFCIADPGDAFLVPTPYYAA 153
|
Length = 153 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 1e-62
Identities = 99/344 (28%), Positives = 161/344 (46%), Gaps = 28/344 (8%)
Query: 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP 141
+ GLPE R+A+A+++G+ G V P+ IV+ GA A L++ L NPGD LVP
Sbjct: 32 YYPDPGLPELREAIAEWLGRRGG--VDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVP 89
Query: 142 SPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS 201
P Y ++ G ++VPV D F + E LEAA + K L + NP+
Sbjct: 90 DPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDLELLEAA------KTPKTKLLYLNNPN 142
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G L + L+ L I ++ DE YA V+ ++A + + +
Sbjct: 143 NPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDA-----YERVI 197
Query: 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVN--CGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319
++ S SK GLPG R+G + + + ++ + S+ +Q A+ L D E
Sbjct: 198 VLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE--- 254
Query: 320 NFLVETSKRLAKRHHNFTKGLEQVGIN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378
L E +R +R + L+++G +K + G F W+DL E+ LE
Sbjct: 255 EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLE-------R 307
Query: 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
++ + + V PGS+F G+ R+ FA ++ L+ AL R+A
Sbjct: 308 LLLEAGVVVRPGSAFGEGGEGFVRLSFAT-PEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 3e-57
Identities = 94/353 (26%), Positives = 162/353 (45%), Gaps = 30/353 (8%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPS 142
G+PE R+A+A+ + G + DP+ I++ GA A L L NPGD L+P
Sbjct: 63 PSAGIPELREAIAEKYKRRYG--LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 143 PYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGLIITNPS 201
P Y +++ + G + VPV D N FK E LEAA K +I+ +P+
Sbjct: 121 PGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPN 173
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G ++ LK++V + +I ++ DEIY V+ + S+ E+ D I
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDR---TI- 229
Query: 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK---MSSFGLVSSQTQYLLASMLSDDEFV 318
I S SK G+ G+R+G V + ++ RK + + QY + L+ +
Sbjct: 230 TINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC-APTPAQYAAIAALNGPQS- 287
Query: 319 DNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALW 376
D + E + +R + L ++ G++ +K + + + LL + E A
Sbjct: 288 DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSE----EFAKK 343
Query: 377 RTIVNDVKLNVSPGSSFQCTE-PGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428
++ + + V PGS F G+ R+ A ++TL+ AL R+A F+ + +
Sbjct: 344 --LLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 9e-40
Identities = 91/350 (26%), Positives = 162/350 (46%), Gaps = 41/350 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+PE R+A+A + K G + +DP ++++ GA A L +PGD ++P+PY+
Sbjct: 69 GIPELREAIAAKL-KRDNG-LDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWV 126
Query: 147 AFDRDLSWRTGVQI-----VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS 201
S+ V++ V V N FK+T E LEAA + K LI+ +PS
Sbjct: 127 ------SYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAI------TPKTKALILNSPS 174
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G + L+++ + +I ++ DEIY V+ +FTS+A + E+ RD
Sbjct: 175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPEL---RDRTI 231
Query: 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-----SFGLVSSQTQYL-LASMLSDD 315
+ SK + G+R+G ++ + MS S +S QY +A++
Sbjct: 232 TVNGFSKAYAMTGWRLGYAAG-PKELI---KAMSKLQSHSTSNPTSIAQYAAVAALNGPQ 287
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374
+ V+ E + +R GL ++ G+ C K + + ++ LL K++ +
Sbjct: 288 DEVE----EMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLL-GKSITDSLE 342
Query: 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
++ + + V PG +F PG+ R+ +A + L+ L RI F+
Sbjct: 343 FAEALLEEAGVAVVPGIAF--GAPGYVRLSYAT-SLEDLEEGLERIERFL 389
|
Length = 393 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-30
Identities = 87/353 (24%), Positives = 148/353 (41%), Gaps = 51/353 (14%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP-YY 145
GLPE R+A+A ++ RG +P++IV+ GA A +L++ L +PGD LV P Y
Sbjct: 133 GLPELREAIAAYLLARRGISC--EPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYP 190
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS--NP 203
A G +++PV D I EALE A + + K + P+ NP
Sbjct: 191 GA--LQALEALGARVIPVPVDEDG---IDPEALEEALAQWK-----PK-AVYVTPTFQNP 239
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G T+ + K+L++ ++ ++ D+ Y + P ++ +D +I
Sbjct: 240 TGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPP----PPPLKALDAPG---RVI 292
Query: 264 Y--SLSKDMGLPGFRVGIVYSFNDTVVNCG-------RKMSSFGLVSSQTQYLLASMLSD 314
Y S SK + PG R+G V V K ++ SS +Q LA+ L
Sbjct: 293 YLGSFSKTL-APGLRLGYV------VAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLS 345
Query: 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEG 371
+ D L + A+R + L + GLF W++L + + L
Sbjct: 346 GHY-DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELL- 403
Query: 372 EIALWRTIVNDVKLNVSPGSSF--QCTEPGWFRVCFANMDDDTLQVALNRIAA 422
AL + +V GS+F R+ F++ ++ ++ + R+AA
Sbjct: 404 AAALEKGVVVTP-----LGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAA 451
|
Length = 459 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-28
Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GL E R+A F+ + + + IV G A+ A ++ + PG ++P+P Y
Sbjct: 66 GLLELRKAACNFVKDKYDLHYSPESEIIVTIG-ASEAIDIAFRTILEPGTEVILPAPIYP 124
Query: 147 AFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
++ + PV D S F++T EALE A + + +++ PSNP G
Sbjct: 125 GYEPIIRLCGAK---PVFIDTRSTGFRLTAEALENAI------TEKTRCVVLPYPSNPTG 175
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
TL ++ L+ + + DKNI ++ DEIY+ V+ P S+A EM R+ +I
Sbjct: 176 VTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT-SIAHF-PEM---REKTIVING 230
Query: 266 LSKDMGLPGFRVGIVYSFNDTV----------VNCGRKMSSFGLVSSQTQYLLASMLSDD 315
LSK + G+R+G +++ + V C SS +QY L+
Sbjct: 231 LSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTC---------ASSISQYAALEALTAG 281
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIAL 375
+ + KR L +G++ K + + + H + + + L
Sbjct: 282 ---KDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGH-FTMSSFDFALDL 337
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKES 430
V + L V PGS+F G+ R+ +A +TL+ L+R+ AF+QQ +S
Sbjct: 338 ----VEEAGLAVVPGSAFSEYGEGYVRLSYA-YSIETLKEGLDRLEAFLQQKAKS 387
|
Length = 387 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-28
Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 76/366 (20%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G PE R+A+A+ + + G D IVM GA GA + + + NPGD +V +PY+
Sbjct: 74 GYPEVREAIAESLNRRFG--TPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFV 131
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN--IKGLIITNPSNPL 204
+ R G ++V V D ++ F+ +ALEAA I K +II +P+NP
Sbjct: 132 EY-RFYVDNHGGKLVVVPTD-TDTFQPDLDALEAA--------ITPKTKAVIINSPNNPT 181
Query: 205 GTTLDRDTLKSLVSFINDKN------IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258
G +TLK+L + + +K+ I+L+ DE Y V+ + + + +
Sbjct: 182 GVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYY------DN 235
Query: 259 LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF-------GLV--SSQTQYLLA 309
I ++YS SK + LPG R+G + N + + +++ G V + Q ++A
Sbjct: 236 SI-VVYSFSKSLSLPGERIGYIA-VNPEMEDADDLVAALVFANRILGFVNAPALMQRVVA 293
Query: 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL 369
L D VD + + ++ L GL ++G C+K + + K+
Sbjct: 294 KCL--DATVDVSIYKRNRDL------LYDGLTELGFECVKPQGAFYLFP--------KSP 337
Query: 370 EGEIALWRTIVNDVK----------LNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
E +DV L V PGS F C PG+FR+ + +D +T++ +L
Sbjct: 338 EE---------DDVAFCEKAKKHNLLLV-PGSGFGC--PGYFRLSYC-VDTETIERSLPA 384
Query: 420 IAAFVQ 425
+
Sbjct: 385 FEKLAK 390
|
Length = 394 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-28
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 14/195 (7%)
Query: 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGDA 137
+ D G P R+AVA F+ + R G DP I + GA+ I L +P D
Sbjct: 111 YTDSAGYPFVRKAVAAFIER-RDGVPK-DPSDIFL---TDGASSGIKLLLQLLIGDPSDG 165
Query: 138 FLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197
++P P Y + ++ G Q VP + D + + +E LE AYE+A I + L++
Sbjct: 166 VMIPIPQYPLYSAAITLLGGKQ-VPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVV 224
Query: 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS-SPKFTSVAEVIQEM-DC 255
NP NP G L RD ++ ++ F +K I L+ DE+Y ++ F S +V+ E+
Sbjct: 225 INPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAE 284
Query: 256 NRDLIHII--YSLSK 268
+ ++ +S SK
Sbjct: 285 YNTDVELVSFHSTSK 299
|
Length = 481 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-27
Identities = 101/410 (24%), Positives = 178/410 (43%), Gaps = 72/410 (17%)
Query: 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAE-GVEVFKDIAIFQDYHGLPEFRQAVAK 97
GVI LG+ E D + W + ASI + E G + A GL E RQ +AK
Sbjct: 21 GVISLGVGEP----DFVTPWNVRE--ASIRSLEQGYTSYTANA------GLLELRQEIAK 68
Query: 98 FMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRT 156
++ K V++DP+ I++ GA+ A ++ M + NPGD L+ P + ++ ++
Sbjct: 69 YLKKRFA--VSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAG 126
Query: 157 GVQIVPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPSNPLGTTLDRDTLKS 215
GV VPV + N FK+ +EAA + K +++ +P+NP G L++ L+
Sbjct: 127 GVP-VPVATTLENEFKVQPAQIEAAITAKT-------KAILLCSPNNPTGAVLNKSELEE 178
Query: 216 LVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275
+ + ++ ++ DEIYA + +TS A I+ M R+ +I SK + G+
Sbjct: 179 IAVIVEKHDLIVLSDEIYAELTYDEA-YTSFAS-IKGM---RERTILISGFSKGFAMTGW 233
Query: 276 RVGIVYS---FNDTVVN-------CGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVET 325
R+G + + F++ ++ C M+ F + + L + D V
Sbjct: 234 RLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEA-----LRAGNDD--------VIR 280
Query: 326 SKRLAKRHHN-FTKGLEQVGINCLKSNAGLFFWMDLRHL------LKEKTLEGEIALWRT 378
+ ++ N F ++G+ C + + + E+ L E
Sbjct: 281 MRDSYRKRRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEE------ 334
Query: 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428
K+ V PGS F + G+ R +A + LQ A+ R+ FV+ K
Sbjct: 335 -----KVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENKK 378
|
Length = 378 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 38/353 (10%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G R+AVA+++ G+ D +V+ G + A E+ + LANPG LVP P +
Sbjct: 74 GALAAREAVAEYLSSDLPGK--LTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFP 131
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
+D + +G+++ +++I + LE+ A +++ NPSNP G+
Sbjct: 132 LYD-TRAAFSGLEVRLYDLLPEKDWEIDLDGLESL------ADEKTVAIVVINPSNPCGS 184
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
RD L+ + I ++ DEIY VF F +A + + + +
Sbjct: 185 VFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASIVP-----VLSLGGI 239
Query: 267 SKDMGLPGFRVG--IVYS----FNDTVVNCGRKMSSFGLVSSQ-TQYLLASML--SDDEF 317
SK +PG+R+G I++ F DTV+ + + L + Q L +L + EF
Sbjct: 240 SKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTPQEF 299
Query: 318 VDNFL--VETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDL-RHLLKEKTLEGEI 373
D + ++++ L L+ + G+ C K ++ + L L E ++ ++
Sbjct: 300 FDGKISVLKSNAELCYEE------LKDIPGLVCPKPEGAMYLMVKLELELFPE--IKDDV 351
Query: 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ + + PGS+F P W R+ + + L+ A +RI F ++
Sbjct: 352 DFCEKLAREESVICLPGSAFGL--PNWVRITIT-VPESMLEEACSRIKEFCER 401
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GLP R+A+A F + G V DP+RI++ G +GA L L +PG +L+ P Y
Sbjct: 70 GLPALREAIAGFYAQRYG--VDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYP 127
Query: 147 AFDRDLSWRTGV-QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
L G Q+VPV D + +++T +E + + G ++ +P+NP G
Sbjct: 128 CNRHFLRLVEGAAQLVPVGPD--SRYQLTPALVERHWNA------DTVGALVASPANPTG 179
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
T L RD L +L + + HLV DEIY + SV EV D ++ S
Sbjct: 180 TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDA-ASVLEV-------DDDAFVLNS 231
Query: 266 LSKDMGLPGFRVG 278
SK G+ G+R+G
Sbjct: 232 FSKYFGMTGWRLG 244
|
Length = 387 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 16/198 (8%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
GL E RQA A F+ + + + P + I++ GAT A + + PGD L+P+P Y
Sbjct: 68 GLLELRQAAADFVKEKYN--LDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAY 125
Query: 146 AAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
++ + V V D + N+F +T E LE A + +K +I+ P+NP
Sbjct: 126 PGYEPIV---NLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD---KLKAVILNYPANPT 179
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G T R+ +K+L + +I ++ DE+Y+ ++ S+AE + D +I
Sbjct: 180 GVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL------PDQTILIN 233
Query: 265 SLSKDMGLPGFRVGIVYS 282
LSK + G+R+G++++
Sbjct: 234 GLSKSHAMTGWRIGLIFA 251
|
Length = 391 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 9e-22
Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 36/352 (10%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G P R+A+ + + G + + + I +GGGA A L + GD ++P+PY+
Sbjct: 71 GTPALRKAIIAKLERRNG--LHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
++ D+ V V C FK+T EALEAA + + LI+ PSNP G
Sbjct: 129 SYP-DMVLANDGTPVIVACPEEQGFKLTPEALEAAI------TPRTRWLILNAPSNPTGA 181
Query: 207 TLDRDTLKSLVSFIND-KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
R L++L + ++ ++ D+IY F + E+ RD + +
Sbjct: 182 VYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL---RDRVLVTNG 238
Query: 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVE 324
+SK + G+R+G D + + S S SS +Q A+ L+ D+ +F+ E
Sbjct: 239 VSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQ---SFVTE 295
Query: 325 TSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND- 382
+ +R L + G++CL + + +++ L+ + T EG + + D
Sbjct: 296 SVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEG-----KVLETDQ 350
Query: 383 ---------VKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425
+ V G+++ P +FR+ A +TL+ A RI V
Sbjct: 351 DVVLYLLDSAGVAVVQGTAYG-LSP-YFRLSIAT-SLETLEEACARIERAVA 399
|
Length = 402 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 84/353 (23%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GLPE R+A A + G + P+++ + G A M LA GD ++P P+Y
Sbjct: 68 GLPELREAYAAHYSRLYGAAI--SPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWY- 124
Query: 147 AFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPSNPL 204
F+ + G++ V + CD A EA R + + + P+NP
Sbjct: 125 -FNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR-------TRAIALVTPNNPT 176
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE----VIQEMDCNRDLI 260
G + L L I L+ DE Y F S + + D + L+
Sbjct: 177 GVVYPPELLHELYDLARRHGIALILDETYR-------DFDSGGGAPHDLFADPDWDDTLV 229
Query: 261 HIIYSLSKDMGLPGFRVGIVYS----------FNDTVVNCGRKMSSFGLVSSQTQYLLAS 310
H+ YS SK L G RVG V + F DTV C ++ Q +A
Sbjct: 230 HL-YSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRI---------GQIAVAW 279
Query: 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLE 370
L + ++ +A+R F ++ L ++ F + +RH ++
Sbjct: 280 GL---PNLADWRAGNRAEIARRRDAFRAVFARLPGWELLASGAYFAY--VRHPFPDRPSR 334
Query: 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
E+A R + + + PG+ F + G+ R+ FAN D + + R+ AF
Sbjct: 335 -EVA--RRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384
|
Length = 386 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 3e-21
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 27/210 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMF---CLANPGDAFLVPSP 143
G+PE R+A AK+ K + +PD I++ G +E I+F + +PGD LVP P
Sbjct: 67 GIPELREAFAKYYKKWG---IDVEPDEILI---TNGGSEAILFAMMAICDPGDEILVPEP 120
Query: 144 YYA---AFDRDLSWRTGVQIVPVHCDISNNFKI-TREALEAAYERAQEASINIKGLIITN 199
+YA F GV+IVPV I F + ++E +E + K ++I+N
Sbjct: 121 FYANYNGFATSA----GVKIVPVTTKIEEGFHLPSKEEIEKLI------TPKTKAILISN 170
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P NP G ++ L+ L ++ L+ DE+Y V+ K+TS ++ ++ +
Sbjct: 171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALS-LEGLEDR--V 227
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVN 289
I II S+SK G R+G + S N ++
Sbjct: 228 I-IIDSVSKRYSACGARIGCLISKNKELIA 256
|
Length = 397 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 6e-21
Identities = 86/377 (22%), Positives = 154/377 (40%), Gaps = 48/377 (12%)
Query: 70 AEGVEVFKDIAIFQDYHGL------PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGA 123
E ++ KD Y+G R+A+A + G + D +V+ G + A
Sbjct: 51 PEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDG---PIEADDVVLCSGCSHA 107
Query: 124 NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183
E+ + LAN G LVP P + + R L+ G+++ + +++I + LE+ +
Sbjct: 108 IEMCIAALANAGQNILVPRPGFPLY-RTLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
L++ NPSNP G+ R L+ +++ + + ++ DEIY VFS F
Sbjct: 167 E------KTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATF 220
Query: 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG-IVY--------SFNDTVVN-CGRK 293
VA + + I L+K +PG+R+G I+ D +V R
Sbjct: 221 EPVASLSSNVP-----ILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRI 275
Query: 294 MSSFGLVSSQTQYLLASMLSD--DEFVDNFL--VETSKRLAKRHHNFTKGLEQVGINCLK 349
+ +V Q L S+L E+ D L +E++ L GL+ V +
Sbjct: 276 LGPCTIV----QGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLQPVMPS--- 328
Query: 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMD 409
G + M + + ++ ++ + + PGS F+ PG+FRV
Sbjct: 329 ---GAMYMMVGIEMEHFPEFKNDVEFTERLIAEQSVFCLPGSCFEY--PGFFRVVLTVPV 383
Query: 410 DDTLQVALNRIAAFVQQ 426
+ A +RI F ++
Sbjct: 384 VMMEE-ACSRIQEFCER 399
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 98/357 (27%), Positives = 146/357 (40%), Gaps = 55/357 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVM-GGGATGANELIMFCLANPGDAFLVPSPYY 145
GLPE RQAVA + +G + DP+ VM GAT A + L PGD ++ P Y
Sbjct: 64 GLPELRQAVAAHYARFQG--LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLY 121
Query: 146 AAFDRDLSWRTG-----VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
A+ L R G V++ P H +++ R AL AA+ S K +++ NP
Sbjct: 122 DAY-LPLIRRAGGVPRLVRLEPPH------WRLPRAALAAAF------SPRTKAVLLNNP 168
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
NP G R+ L L F + +CDE++ VF + + + M R+
Sbjct: 169 LNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLM-TLPGM---RERT 224
Query: 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYL-----------LA 309
I S K L G++VG V C +++ Q+L +A
Sbjct: 225 VKIGSAGKIFSLTGWKVGFV---------CAAP-PLLRVLAKAHQFLTFTTPPNLQAAVA 274
Query: 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL 369
L D++ LA+ GL ++G L S F +DL L
Sbjct: 275 YGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLA--- 328
Query: 370 EGEIALWRTIVNDVKLNVSPGSSFQCTEP--GWFRVCFANMDDDTLQVALNRIAAFV 424
E ++A R +V + + P S+F +P R CFA D TL A+ R+AA
Sbjct: 329 EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAAR 384
|
Length = 387 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 1e-20
Identities = 79/355 (22%), Positives = 155/355 (43%), Gaps = 33/355 (9%)
Query: 87 GLPEFRQAVAKFMGKG----RGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS 142
G PE R+AVA + + T D +V+ G + A + + L + GD LVP+
Sbjct: 76 GSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPA 135
Query: 143 PYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
P + ++ G+++ +C +++ + + + K LI+TNPSN
Sbjct: 136 PGFPHYETVCKA-YGIEMRFYNCRPEKDWEADLDEIRRLVDD------RTKALIMTNPSN 188
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G+ R ++ ++ + + L+ DEIYA VF+ FTSVA + D + I
Sbjct: 189 PCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVA----DFDTTVPRV-I 243
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCG------RKMSSFGL-VSSQTQYLLASMLSDD 315
+ +K++ +PG+R+G + D N G +++ S Q L L
Sbjct: 244 LGGTAKNLVVPGWRLGWLL-LVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALL-- 300
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQ-VGINCLKSNAGLFFWMDLRHLLKE-KTLEGEI 373
L + +L + + + +G++ +F + R L++ + ++ ++
Sbjct: 301 NTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMF--LMSRLDLEKFRDIKSDV 358
Query: 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428
+ ++ + + V PG F PG+ R+ + + L+ A+ RI AF ++ K
Sbjct: 359 EFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVERIKAFCERHK 410
|
Length = 412 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-20
Identities = 87/362 (24%), Positives = 139/362 (38%), Gaps = 67/362 (18%)
Query: 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG--GGATGANELIMFCLANPGDAFLVPS 142
Y G+ +RQAVA + + G V DP+ V+ G G + + NPGD LVP
Sbjct: 66 YEGMLAYRQAVADWYKRRFG--VELDPETEVLSLIGSKEGIAHIPL-AFVNPGDIVLVPD 122
Query: 143 PYYAAFDRDLSWRTGVQI-------VPVHCDISNNFKITREAL-EAAYERAQEASINIKG 194
P Y + R G +P+ N F +A+ E ++A K
Sbjct: 123 PGYPVY------RIGTLFAGGEPYEMPLK--EENGFLPDFDAIPEDIAKKA-------KL 167
Query: 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254
+ I P+NP G K LV F + NI + D Y+ F K S EV D
Sbjct: 168 MFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKD 227
Query: 255 CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQT-------- 304
+ +SLSK + G+R+G+ G ++ G V +
Sbjct: 228 VGIEF----HSLSKTYNMTGWRIGMA---------VGNADLIAGLGKVKTNVDSGVFQAI 274
Query: 305 QYL-LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL 363
QY +A++ + V E K +R + L+++GI+ K A + W+
Sbjct: 275 QYAAIAALNGPQDVVK----EIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWV----- 325
Query: 364 LKEKTLEG--EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
EG ++ + + V+PG F G+ R+ + D+ L+ A+ RI
Sbjct: 326 ---PVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL-TVPDERLEEAVARIK 381
Query: 422 AF 423
Sbjct: 382 KL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 5e-20
Identities = 67/277 (24%), Positives = 124/277 (44%), Gaps = 36/277 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
E R A+A++ G DP+ +++G G+ EL++ PGD L+P P ++
Sbjct: 58 DYRELRAALAEYYG-------VVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFS 110
Query: 147 AFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
++ + + G ++V V F++ +A+ AA K + + NP+NP G
Sbjct: 111 MYEI--AAQLAGAEVVKVP---LKEFRLDLDAILAAIRD------KTKLVFLCNPNNPTG 159
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
T L R+ L++L+ + +V DE Y FS S E+++ +LI ++ +
Sbjct: 160 TLLPREELRALLE-ALPEGGLVVIDEAYIE--FSPE---SSLELLKYPP---NLI-VLRT 209
Query: 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVE 324
SK GL G RVG + N ++ K+ F VSS + L D ++++ VE
Sbjct: 210 FSKAFGLAGLRVGYAIA-NPELIAALNKVRPPFN-VSSPALAAAIAALRDADYLEES-VE 266
Query: 325 TSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
+ +R L+ +G+ + + F + +
Sbjct: 267 RIREERER---LYAALKALGLFGVFPSQANFVLVRVP 300
|
Length = 356 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
Query: 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLV 140
+ D GLP R+ VA+F+ + G DP+ I + GA+ I+ + D LV
Sbjct: 103 YSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLV 160
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
P P Y + +S G +VP + + S N+ + L + +A+ I ++ ++I NP
Sbjct: 161 PVPQYPLYSATISLLGGT-LVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINP 219
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK-FTSVAEVIQEM 253
NP G L L+ ++ F + + L+ DE+Y ++ + F S +V+ +M
Sbjct: 220 GNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDM 273
|
Length = 407 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 1e-18
Identities = 81/338 (23%), Positives = 146/338 (43%), Gaps = 27/338 (7%)
Query: 110 DPDRIVMGGGATGANELIM-FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS 168
DP+ I + GA+ A ++M + + D L P P Y + ++ G +VP + D +
Sbjct: 190 DPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 248
Query: 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLV 228
+ + L+ E A+ I ++ L++ NP NP G L + + +V F + + L+
Sbjct: 249 TGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308
Query: 229 CDEIYAATVF-SSPKFTSVAEVIQEMDCNRDLIHII--YSLSKDM-GLPGFRVGI--VYS 282
DE+Y V+ KF S +V + M I ++ S+SK G G R G V
Sbjct: 309 ADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 368
Query: 283 FNDTVVNCGRKMSSFGLVSSQTQYLLASMLSD-----DEFVDNFLVETS---KRLAKRHH 334
F V K++S L S+ + +LAS++ DE ++++ E LA+R
Sbjct: 369 FTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAK 428
Query: 335 NFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIA--------LWRTIVNDVKL 385
L + G+ C K+ ++ + + L +K ++ A + ++N +
Sbjct: 429 TLEDALNSLEGVTCNKAEGAMYLFPRIH--LPQKAIKAAEAAKTAPDAFYCKRLLNATGI 486
Query: 386 NVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
V PGS F W C +D + ++R+ F
Sbjct: 487 VVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEF 524
|
Length = 534 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 88/369 (23%), Positives = 141/369 (38%), Gaps = 85/369 (23%)
Query: 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIM---FCLANPGDAFLVP 141
Y G+ EFR+AVA + + G V DP+ V+ G+ E I NPGD LVP
Sbjct: 68 YEGMLEFRKAVADWYKRRFG--VELDPETEVI--SLIGSKEGIAHIPLAFVNPGDVVLVP 123
Query: 142 SPYYAAFDRDLSWRTG-------VQIVPVHCDISNNFKITREAL-EAAYERAQEASINIK 193
P Y + + G +P+ + N F +A+ E ++A K
Sbjct: 124 DPGYPVY------KIGTIFAGGEPYFMPLKEE--NGFLPDLDAIPEDVAKKA-------K 168
Query: 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253
+ I P+NP G D + + +V F +I + D Y+ + K S EV
Sbjct: 169 LMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAK 228
Query: 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQ-------- 303
D + +SLSK + G+R+G G ++ G V S
Sbjct: 229 DVGIEF----HSLSKTYNMTGWRIGFA---------VGNADLIAGLGKVKSNVDSGVFQA 275
Query: 304 TQYL-LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW----- 357
Q +A++ E V+ E K +R +GL ++G+ A + W
Sbjct: 276 IQEAGIAALNGPQEVVE----ELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPK 331
Query: 358 ----MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDT 412
+ LL +K +V V+PG+ F G+FR A + D+
Sbjct: 332 GYTSAEFATLLLDKA---------GVV------VTPGNGFGEYGEGYFR--IALTVPDER 374
Query: 413 LQVALNRIA 421
++ A+ RI
Sbjct: 375 IEEAVERIK 383
|
Length = 385 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 1e-16
Identities = 77/341 (22%), Positives = 144/341 (42%), Gaps = 34/341 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+PE R+A+A++ K G V D D +++ GA A L L GD ++P P +
Sbjct: 71 GIPELREAIAEYYKKFYGVDV--DVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFV 128
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKI-TREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ D + + + N F+ E LE +R + ++I P+NP G
Sbjct: 129 CYVEDAKI-AEAKPIRIPLREENEFQPDPDELLELITKRT-------RMIVINYPNNPTG 180
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
TLD++ K++ D NI+++ DE Y ++ K + + + N L + S
Sbjct: 181 ATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPD---NTILAN---S 234
Query: 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF-----GLVSSQTQYLLASMLSDDEFVDN 320
SK + G+R+G V + + + M G V+S Q L E
Sbjct: 235 FSKTFAMTGWRLGFVIAPEQVI----KDMIKLHAYIIGNVASFVQIAGIEALRSKESWKA 290
Query: 321 FLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379
+ E K +R K L+++ I + + + ++ + E + A W +
Sbjct: 291 -VEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET--GMSSE-DFAEW--L 344
Query: 380 VNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
+ ++ V PG++F G+ R+ +A + ++ A+ R+
Sbjct: 345 LEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIE-AMERM 384
|
Length = 391 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 44/350 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GL R+A+A + + G + P+RIV+ GA+ A L L GD L+P P Y
Sbjct: 68 GLAPLREAIAAWYARRFG--LDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYP 125
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPSNPLG 205
+R + V V + F++T +EAA+ ER + G+++ +PSNP G
Sbjct: 126 C-NRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTR-------GVLLASPSNPTG 177
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
T++ D L+ +V + + + DEIY + + ++++ D+I I S
Sbjct: 178 TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALS-------LGDDVI-TINS 229
Query: 266 LSKDMGLPGFRVG--IVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDE----FVD 319
SK + G+R+G +V + +V K+ +Q ++ AS L+ F
Sbjct: 230 FSKYFNMTGWRLGWLVV---PEALVGTFEKL-------AQNLFICASALAQHAALACFEP 279
Query: 320 NFLVETSKRLA---KRHHNFTKGLEQVGINC-LKSNAGLFFWMDLRHLLKEKTLEGEIAL 375
+ L +R A +R LE +G + + + + D R + AL
Sbjct: 280 DTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRG-VAHPAAGDSAAL 338
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPGWF-RVCFAN-MDDDTLQVALNRIAAF 423
+ +++D + + PG F P + R+ +A M L+ A+ R+
Sbjct: 339 TQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSR--LEEAVARLGKL 386
|
Length = 388 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 36/324 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIM-FCLANPGD-----AFLV 140
G R+A++ + + G V DPD V+ + G+ E I F L +
Sbjct: 37 GTKALREAISGWFERRFG--VKLDPDAQVLP--SAGSKEAIFHFPLVFIDPEEDRRRVIF 92
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
+P Y ++R + G + V + F + E +E + +E I + I P
Sbjct: 93 GTPGYPVYERGALF-AGGEPTAVKLKKEDGFLLRLEKVEKSI--LEETKI----VWINYP 145
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
NP G T R LK ++ + I L DE Y F P S EV + +
Sbjct: 146 HNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPP-HSALEV------GIENV 198
Query: 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ-TQYLLASMLSDDEFVD 319
+SLSK G+ G+R G V + + ++FG+ S Q + SDD V
Sbjct: 199 LAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHV- 257
Query: 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379
+E K ++ F + +VG+ L +A + W+ + + K + L I
Sbjct: 258 ---LERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRL-LENGI 313
Query: 380 VNDVKLNVSPGSSFQCTEPGWFRV 403
V V+PG +F E G+ RV
Sbjct: 314 V------VAPGENFGSGEEGYVRV 331
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 81/370 (21%), Positives = 153/370 (41%), Gaps = 66/370 (17%)
Query: 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP 141
+ GLPE R+A+ K + G V PD + + T A +LI L +PGD L+P
Sbjct: 66 YGPSEGLPELREAIVKREKRKNG--VDITPDDVRVTAAVTEALQLIFGALLDPGDEILIP 123
Query: 142 SPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI----- 196
P Y + +V + + ++ E E Q +I+ I
Sbjct: 124 GPSYPPY---------TGLVKFYGGVPVEYRTIEE------EGWQPDIDDIRKKITEKTK 168
Query: 197 ---ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253
+ NP+NP G ++ TLK ++ + ++ ++ DEIY + K S + ++
Sbjct: 169 AIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTKD- 226
Query: 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN-----DTVVNCGRKMSSFGLV-SSQTQY- 306
+ ++ LSK G+R+G +Y + V K++ L ++ Q+
Sbjct: 227 ----VPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFA 282
Query: 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFF--------- 356
+A + ++++ ++ K+L +R K L ++ GI+ K G F+
Sbjct: 283 AIAGLTGPMDYLEEYM----KKLKERRDYIYKRLNEIPGISTTKP-QGAFYIFPRIEEGP 337
Query: 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416
W D KE L+ ++++ + GS F G FR+ F + L+ A
Sbjct: 338 WKD----DKEFVLD--------VLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEA 384
Query: 417 LNRIAAFVQQ 426
++R F+++
Sbjct: 385 MDRFEEFMRE 394
|
Length = 398 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-16
Identities = 68/346 (19%), Positives = 142/346 (41%), Gaps = 43/346 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G E + + K+ K ++F + I+ GA L + + +PGD ++ PY+
Sbjct: 67 GDVELIEEIIKYYSKNYD--LSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFT 124
Query: 147 AFDRDLSWRTGVQIVPVHCDI--SNNFKITREALEAAYERAQEASIN--IKGLIITNPSN 202
+ + G P+ + + F+I + LEA I K +I+ +P+N
Sbjct: 125 PYKDQIEMVGGK---PIILETYEEDGFQINVKKLEAL--------ITSKTKAIILNSPNN 173
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G ++TL+ + + ++ ++ DE+Y F F +A + +
Sbjct: 174 PTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMA----TLAGMPERTIT 228
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS---SFGLVSSQTQYLLASMLSDDEFVD 319
S SKD + G+R+G V + D ++ + ++ F + + + ++ D V
Sbjct: 229 FGSFSKDFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVP 287
Query: 320 NFLVETSKRL---AKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIAL 375
E KRL KR +E + ++ ++ +++++ KT +
Sbjct: 288 LIKEEFQKRLEYAYKR-------IESIPNLSLHPPKGSIYAFINIK-----KTGLSSVEF 335
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
++ + + V PG +F + G+ R+ + + L+ A NRI
Sbjct: 336 CEKLLKEAHVLVIPGKAFGESGEGYIRLA-CTVGIEVLEEAFNRIE 380
|
Length = 384 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 98/400 (24%), Positives = 151/400 (37%), Gaps = 125/400 (31%)
Query: 84 DYHGLPEFRQAVAK-FMGKGRGGRVTFDPDRIVMGGGATGANELIMFC---LANPGDAFL 139
D GL R+A+ + + KG D D I +G G + ELI+ L N GD L
Sbjct: 70 DSKGLFSARKAIMQYYQQKGIPD---VDVDDIYIGNGVS---ELIVMAMQALLNNGDEVL 123
Query: 140 VPSPYYAAFDRDLSWRTGVQIV---PVH--CDISNNF---------KITREALEAAYERA 185
VP+P Y W V + PVH CD + KIT
Sbjct: 124 VPAPDYPL------WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP---------- 167
Query: 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245
K ++I NP+NP G ++ L+ +V N+ + DEIY ++ S
Sbjct: 168 -----RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHIS 222
Query: 246 VAEVIQEMDCNRDLIHIIYS-LSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSF--GLV 300
+A + DL+ + ++ LSK + GFRVG +V G K + GL
Sbjct: 223 IASLAP------DLLCVTFNGLSKAYRVAGFRVG-------WMVLSGPKKHAKGYIEGL- 268
Query: 301 SSQTQYLLASM---------------LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344
+LASM L + ++ ++ RL ++ + L + G
Sbjct: 269 -----DMLASMRLCANVPAQHAIQTALGGYQSINELILPGG-RLYEQRDRAWELLNAIPG 322
Query: 345 INCLKSNAGLF-----------------FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387
++C+K L+ F +DL LL+EK L +
Sbjct: 323 VSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDL--LLQEKVL-----------------L 363
Query: 388 SPGSSFQCTEPGWFRVCF-ANMDDDTLQVALNRIAAFVQQ 426
G+ F EP FR+ +DD L+ A+ RI F+
Sbjct: 364 VQGTGFNWPEPDHFRIVTLPRVDD--LEEAIGRIGRFLSG 401
|
Length = 404 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 96/352 (27%), Positives = 143/352 (40%), Gaps = 53/352 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLVPSPY 144
G P ++A A F + G VT DP+ ++ GG G EL CL NPGD LVP P
Sbjct: 71 GYPFLKEAAADFYKREYG--VTLDPETEVAILFGGKAGLVELPQ-CLMNPGDTILVPDPG 127
Query: 145 YAAFDRDLSWRT--GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
Y + LS Q + NNF + E A++A K + + P+N
Sbjct: 128 YPDY---LSGVALARAQFETMPLIAENNFLPDYTKIPE--EVAEKA----KLMYLNYPNN 178
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G + + V+F NI +V D Y A F K S + +D+
Sbjct: 179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQT----PGAKDVGIE 234
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------SSFGLVSSQTQYLLASMLSDDE 316
+Y+LSK + G+RV N++V+ + S FG + + ++LSD
Sbjct: 235 LYTLSKTFNMAGWRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQ---DAAIEALLSDQS 290
Query: 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF-WMDLRHLLKEKTLEGEIAL 375
V LV + R + F ++G G FF WM + K T E + A
Sbjct: 291 CVAE-LVARYES---RRNAFISACREIGWEVDAP-KGSFFAWMPVP---KGYTSE-QFA- 340
Query: 376 WRTIVNDVKLN-----VSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
D+ L V+PG+ F G+ RV D++ L+ A+ RI
Sbjct: 341 ------DLLLEKAHVAVAPGNGFGEHGEGYVRVGLL-TDEERLREAVERIGK 385
|
Length = 389 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 7e-16
Identities = 100/357 (28%), Positives = 152/357 (42%), Gaps = 41/357 (11%)
Query: 79 IAIFQD--YHGLP------EFRQAVAKFMGKGRGGRVTFDPDRIVMG--GGATGANELIM 128
IA D HG P FRQA+ + + G V DPD + G G L +
Sbjct: 58 IAALADPQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEALPLLGSKEGLTHLAL 115
Query: 129 FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188
NPGD LVPSP Y A R G QI P+ N++ I ++ E AQ+A
Sbjct: 116 -AYVNPGDVVLVPSPAYPAHFRG-PLIAGAQIYPIILKPENDWLIDLSSIPE--EVAQQA 171
Query: 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248
I L PSNP T R+ + +V+F I LV D YA F + TS+ E
Sbjct: 172 KI----LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLE 227
Query: 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---FGLVSS-QT 304
+ D + ++LSK + G+RVG V N ++ R + + +G+ S+ Q
Sbjct: 228 IPGAKDIGVEF----HTLSKTYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQK 282
Query: 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL 364
A L D +L + +R R +GL ++G N + A ++ W+ +
Sbjct: 283 AAETALQLPDS-----YLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPVGM 337
Query: 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
+ AL ++ + V+PG++F G+ R+ D D L AL+R+
Sbjct: 338 GST----DFAL--NVLQKTGVVVTPGNAFGEGGEGYVRISLI-ADCDRLGEALDRLK 387
|
Length = 394 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+PE R+A+A+++ + G P+RI + A L L PGD + +P +
Sbjct: 62 GIPELREALARYVSRLHGVAT--PPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWP 119
Query: 147 AFDRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
G ++V V D + + + L AA + L I +P+NP G
Sbjct: 120 NLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITPRT------RALFINSPNNPTG 172
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF----SSPKFTSVAEVIQEMDCNRDLIH 261
T RD L+++++ + +V DE+Y + +P F +AE D I
Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE-------PDDRII 225
Query: 262 IIYSLSKDMGLPGFRVG 278
+ S SK+ + G+R+G
Sbjct: 226 FVNSFSKNWAMTGWRLG 242
|
Length = 382 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G PE R+ + K +G D D ++ GAT + L+M +PGD + P P Y
Sbjct: 67 GFPELRELILKDLG--------LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYL 118
Query: 147 AFDRDLSWRTG--VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
D + + R G V VP++ N+K+T E ++ + N + + + +P NPL
Sbjct: 119 IID-NFASRFGAEVIEVPIY-SEECNYKLTPELVKENMDE------NTRLIYLIDPLNPL 170
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G++ + +K D + L+ D Y F + + T AE E Y
Sbjct: 171 GSSYTEEEIKEFAEIARDNDAFLLHDCTYRD--F-AREHTLAAEYAPEHTV------TSY 221
Query: 265 SLSKDMGLPGFRVGIVYSFNDTVVNC-GRKMSSFGLVSSQTQY-LLASMLSDDEFVDNFL 322
S SK G+ G R+G V + D + ++ G + Q +A + DE++D
Sbjct: 222 SFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLG-TNVIAQEAAIAGLKVKDEWIDRIR 280
Query: 323 VET--SKRLAKR 332
T +++L K
Sbjct: 281 RTTFKNQKLIKE 292
|
Length = 380 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-15
Identities = 86/348 (24%), Positives = 136/348 (39%), Gaps = 45/348 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG--GGATGANELIMFCLANPGDAFLVPSPY 144
G+ EF +AV ++ V + D+ V+ G G L M ANPGD LVP P
Sbjct: 70 GIQEFHEAVTEYYNNTHN--VILNADKEVLLLMGSQDGLVHLPM-VYANPGDIILVPDPG 126
Query: 145 YAAFDRDLSWRTGVQIV-----PVHCDISNNFKITREALEAAYERAQEASINIKGLIITN 199
Y A++ TG+Q+ + N+F E + E A +A + +I+
Sbjct: 127 YTAYE------TGIQMAGATSYYMPLKKENDFLPDLELIPE--EIADKAKM----MILNF 174
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P NP+ D K +++F NI +V D YA F K S V +++
Sbjct: 175 PGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSV----PGAKEV 230
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---FGLVSSQTQYLLASMLSDDE 316
I SLSK L G R+G + N+ +V + S +G V Q + L
Sbjct: 231 GVEINSLSKSYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYG-VFLPIQKAACAAL---R 285
Query: 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALW 376
F + +R G G N K +F W + +G +L
Sbjct: 286 NGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVW--------AEIPKGWTSLS 337
Query: 377 RT--IVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
+++ + V+PG +F G+ R+ D++ LQ A+ I
Sbjct: 338 FAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384
|
Length = 399 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 75/347 (21%), Positives = 134/347 (38%), Gaps = 40/347 (11%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA-TGANELIMFCLANPGDAFLVPSPYYAA 147
E A+A + K R P+ IV G G + I L PGD ++ +P Y
Sbjct: 63 DELYAAIAHWF-KQRHQ-WEIKPEWIVFVPGVVPGISLAIRA-LTKPGDGVVIQTPVYPP 119
Query: 148 FDRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
F + G +++ + ++I +ALE A+ +K I+ NP NP G
Sbjct: 120 FYNAIK-LNGRKVIENPLVEDDGRYEIDFDALEKAFVDE-----RVKLFILCNPHNPTGR 173
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
++ L+ + + ++ DEI+A V K A + + D + S
Sbjct: 174 VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERF---ADNSITLTSA 230
Query: 267 SKDMGLPGFRVGIVYSFNDTVV---------NCGRKMSSFGLVSSQTQYLLASMLSDDEF 317
SK L G + + N + N S+ G+++++ Y + +
Sbjct: 231 SKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAY-----NQGEPW 285
Query: 318 VDNFL--VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIAL 375
+D L ++ ++ K L V + + W+D R L L+ L
Sbjct: 286 LDELLEYLKDNRDYVADF--LNKHLPGVKVT--EPQGTYLAWLDCREL----GLDDS-EL 336
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
++ + K+ +SPGS+F G+ R+ FA L+ AL R+
Sbjct: 337 AEFLLEEAKVALSPGSTFGEEGSGFVRLNFA-CPRAILEEALERLKR 382
|
Length = 388 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 83/364 (22%), Positives = 140/364 (38%), Gaps = 80/364 (21%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G PEF++AVA P+ I+ GATGAN L+++ L PGD + P Y
Sbjct: 63 GSPEFKEAVASLYQ-------NVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQ 115
Query: 147 A-FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+D S V + + N + L E + N K + I N +NP G
Sbjct: 116 QLYDIPESLGAEVDYWQLKEE--NGW------LPDLDELRRLVRPNTKLICINNANNPTG 167
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH--I- 262
+DR L+ +V + +++ DE+Y S+A DL I
Sbjct: 168 ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLD-EDGSTPSIA----------DLYEKGIS 216
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFL 322
S+SK LPG RVG + + N+ V++ RK + ++ A + D + +
Sbjct: 217 TNSMSKTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMIC-------AGVFDD--MLASLA 266
Query: 323 VETSKRLAKRHHNFTKGLEQV---------GINCLKSNAG------LFFWMDLR----HL 363
+E + +R+ + + ++ +K A L M L
Sbjct: 267 LEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDMPSEDFCLKL 326
Query: 364 LKEK-TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
LKE L + PG+ F G R+ + D +TL+ L +++
Sbjct: 327 LKETGVL-----------------LVPGNRFD--LEGHVRIGYCC-DTETLKKGLKKLSE 366
Query: 423 FVQQ 426
F+++
Sbjct: 367 FLRE 370
|
Length = 373 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 76/352 (21%), Positives = 121/352 (34%), Gaps = 84/352 (23%)
Query: 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS 142
+Y L R A A + G ++ GA A L+ LA PG LV +
Sbjct: 47 PEYDEL---RAAAAAYYG--------LPAASVLPVNGAQEAIYLLPRLLA-PGRV-LVLA 93
Query: 143 P----YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
P Y A+ G ++V + + L AA E A L++
Sbjct: 94 PTYSEYARAWRA-----AGHEVVELPDL---------DRLPAALEEA-------DLLVVC 132
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258
NP+NP G + +TL +L + + + LV DE + FT A + +
Sbjct: 133 NPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFI-------DFTPDASLAPQAARFPG 185
Query: 259 LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS-FGL--VSSQTQYLLASMLSDD 315
L+ ++ SL+K GL G R+G V + + ++ G V+ + L+D
Sbjct: 186 LV-VLRSLTKFFGLAGLRLGFVVAHPALI----ARLREALGPWTVNGPALAAGRAALADT 240
Query: 316 EFVDNFLVETSKRLAKR----HHNFTK--GLEQVGINCLKSNAGLFFWMDLRH--LLKEK 367
+ T RLA + GL VG LF + L E
Sbjct: 241 AWQA----ATRARLAAERARLAALLARLGGLRVVG------GTALFLLVRTPDAAALHEA 290
Query: 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC-FANMDDDTLQVALN 418
I + +F +P + R + ++D L AL
Sbjct: 291 LARRGIL------------IRDFDNFPGLDPRYLRFALPTDEENDRLLEALA 330
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 85/370 (22%), Positives = 145/370 (39%), Gaps = 58/370 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GL R+A+A+++ R D I + G A E+IM LA PG L+P P Y
Sbjct: 95 GLLPARRAIAEYLS--RDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYP 152
Query: 147 AFDRDLSWRTGVQIVPV-HCDI--SNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
++ R + V H D+ +++ E +EA A N ++I NP+NP
Sbjct: 153 LYEA----RAVFSGLEVRHFDLLPERGWEVDLEGVEAL------ADENTVAMVIINPNNP 202
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT------SVAEVIQEMDCNR 257
G+ + L + I ++ DE+Y F S F VA V+
Sbjct: 203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLT------ 256
Query: 258 DLIHIIYSLSKDMGLPGFRVG-IVYS-----FNDTVVNCGRKMSSFGLVSSQTQYLLASM 311
+ S+SK +PG+R+G I +T V + ++ +S+ +
Sbjct: 257 -----LGSISKRWVVPGWRLGWIATCDPNGILKETKVV--DSIRNYLNISTDPATFVQGA 309
Query: 312 L------SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWM---DLRH 362
+ + +EF L K A + K ++ I C G F M DL
Sbjct: 310 IPQIIANTKEEFFTKTL-GLLKETADICYEKIKEIK--CITCPHKPEGSMFVMVKLDLSC 366
Query: 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
L ++ ++ + + + V PGS+ W R+ FA +D +L+ L R+ +
Sbjct: 367 L---SGIKDDMDFCCKLAKEESVVVLPGSALGMKN--WLRITFA-IDPPSLEDGLERLKS 420
Query: 423 FVQQDKESEK 432
F + +
Sbjct: 421 FCLRHAKLAN 430
|
Length = 430 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 70/325 (21%), Positives = 131/325 (40%), Gaps = 53/325 (16%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLVPSPY 144
G+P R+A++++ V DP+ IV G G L M + GD LVP+P
Sbjct: 68 GIPRLRRAISRWYQDRYD--VDIDPESEAIVTIGSKEGLAHL-MLATLDHGDTVLVPNPS 124
Query: 145 YAAFDRDLSWRTGVQIVPVH--------CDISNNFKITREALEAAYERAQEASI-NIKGL 195
Y P+H + + + ERA S K +
Sbjct: 125 Y----------------PIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMM 168
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255
I+ PSNP ++ + + +V+ ++ +V D YA V+ K S+ +V
Sbjct: 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQV----PG 224
Query: 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---FGLVSSQTQYLLASML 312
+D+ ++LSK + G+R+G + N +V+ ++ S +G + +A++
Sbjct: 225 AKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALE 283
Query: 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL----RHLLKEKT 368
D + V + +++ +R KGL + G A ++ W + +
Sbjct: 284 GDQQCVR----DIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAM----- 334
Query: 369 LEGEIALWRTIVNDVKLNVSPGSSF 393
G + + ++N+ K+ VSPG F
Sbjct: 335 --GSLEFAKKLLNEAKVCVSPGIGF 357
|
Length = 395 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 42/271 (15%)
Query: 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA- 146
E +QA+A + G DP++I++G G+ EL++ PGDA LVP P Y+
Sbjct: 56 PAELKQALADYYG--------VDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSM 107
Query: 147 ----AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
A VP+ + + L A ++ K + + +P+N
Sbjct: 108 YEISAKIHGAEVVK----VPL---DEDGQLDLEDILVAIDDK-------PKLVFLCSPNN 153
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G L R +++++ + + +V DE Y FS S ++ E +LI +
Sbjct: 154 PTGNLLSRSDIEAVLERTPEDAL-VVVDEAYGE--FSG--EPSTLPLLAEYP---NLI-V 204
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNF 321
+ +LSK GL G R+G + N +++ K+ F +S Q + L DD+F++
Sbjct: 205 LRTLSKAFGLAGLRIGYAIA-NAEIIDALNKVRAPFN-LSRLAQAAAIAALRDDDFIEK- 261
Query: 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352
VE +R ++ K L G+ S+A
Sbjct: 262 TVEEINAERERLYDGLKKLP--GLEVYPSDA 290
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 90/358 (25%), Positives = 142/358 (39%), Gaps = 56/358 (15%)
Query: 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG--GGATGANELIMFCLANPGDAFLVPS 142
+HG +FR+A A++ + G + DP+ V+ G G L + L NPGD L+
Sbjct: 67 FHGTLDFREAAAQWYEQRFG--LAVDPETEVLPLIGSQEGTAHLPLAVL-NPGDFALLLD 123
Query: 143 PYYAAFDRDLSWRTGV-----QIVPVHCDISNNF-----KITREALEAAYERAQEASINI 192
P Y S GV QI P+ N+F I E L A
Sbjct: 124 PGYP------SHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQA----------- 166
Query: 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252
+ ++++ P NP + V+F ++ LV D Y VF I +
Sbjct: 167 RLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDG---EVEPPSILQ 223
Query: 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYL----- 307
D + + ++LSK + GFR+G N ++ R++ + V QY
Sbjct: 224 ADPEKSVSIEFFTLSKSYNMGGFRIGFAIG-NAQLIQALRQVKA---VVDFNQYRGILNG 279
Query: 308 -LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE 366
+A++ V +T + +R F L Q+G A ++ W L +
Sbjct: 280 AIAALTGPQATVQ----QTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQG 335
Query: 367 KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD-DTLQVALNRIAAF 423
++E L V + SPGS F + G+ R FA + D D L+ A+ RIAAF
Sbjct: 336 NSVEFCTQL----VAQTGVAASPGSGFGKSGEGYVR--FALVHDPDILEEAVERIAAF 387
|
Length = 388 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 8e-13
Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 30/341 (8%)
Query: 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPY 144
G+PE A+A+ K G + DP++ + + G T A + L NPGD ++ +P+
Sbjct: 91 FGVPELNSAIAERFKKDTG--LVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 148
Query: 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
Y +++ LS G +I V +F + + L+AA+ + + ++I P NP
Sbjct: 149 YDSYEATLS-MAGAKIKTVTLR-PPDFAVPEDELKAAF------TSKTRAILINTPHNPT 200
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G R+ L+ + S + ++ DE+Y F + + + + +
Sbjct: 201 GKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHIS-----MASLPGMYERTVTMN 255
Query: 265 SLSKDMGLPGFRVGIVYSFNDTVVNCG-RKMSSFGLVSSQT--QYLLASMLSDDEFVDNF 321
SL K L G+++G ++ + G R+ SF ++ T Q+ + L +++
Sbjct: 256 SLGKTFSLTGWKIG--WAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAAL---RAPESY 310
Query: 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381
E + + + +GL++VG S+ F +D E +IA ++
Sbjct: 311 YEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPF----GFENDIAFCEYLIE 366
Query: 382 DVKLNVSPGSSFQCT-EPGWFRVCFA-NMDDDTLQVALNRI 420
+V + P S F E G V FA D++TL+ A+ R+
Sbjct: 367 EVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERM 407
|
Length = 413 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 9e-13
Identities = 82/354 (23%), Positives = 129/354 (36%), Gaps = 67/354 (18%)
Query: 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIM---FCLA-NPGDAFLVP 141
G PE R+A+ ++ + R G DP ++ G EL+ L PGD ++P
Sbjct: 56 WGTPELREAIVDWL-ERRRGVPGLDPTAVL---PVIGTKELVAWLPTLLGLGPGDTVVIP 111
Query: 142 SPYYAAFDRDLSWRTGVQIV---PVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
Y ++ G + PV D L + +
Sbjct: 112 ELAYPTYE------VGALLAGATPVAADDPTELDPVGPDL----------------IWLN 149
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258
+P NP G L D L+++V++ ++ + DE Y + ++ C D
Sbjct: 150 SPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEG----RPVSILDPRVCGGD 205
Query: 259 LIHI--IYSLSKDMGLPGFRVGIVYSFNDTVVNC--GRKMSSFGLVSSQTQYLLASMLSD 314
+ ++SLSK L G+R G V V RK + +V + Q + + L D
Sbjct: 206 HTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHAGL-MVPAPVQAAMVAALGD 264
Query: 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374
D V E R A R LE+ G S AGL+ W GE A
Sbjct: 265 DGHV----AEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW----------ATRGEDA 310
Query: 375 LWRTI--VNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
W T+ + ++ + V+PG + RV D+ RIAA V +
Sbjct: 311 -WDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDE--------RIAAAVAR 355
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 9e-13
Identities = 97/400 (24%), Positives = 158/400 (39%), Gaps = 104/400 (26%)
Query: 74 EVFKDIAI-------FQDYHGLPEFRQAVAKF-MGKGRGGRVTFDPDRIVMGGGATGANE 125
EV D+A + D GL R+A+ ++ KG D D I G G + E
Sbjct: 166 EVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPN---VDVDDIYTGNGVS---E 219
Query: 126 LI---MFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIV---PVH--CDISNNF------ 171
LI M L + GD L+PSP Y W V + VH CD + +
Sbjct: 220 LINLSMSALLDDGDEVLIPSPDYPL------WTACVNLAGGTAVHYRCDEQSEWYPDIDD 273
Query: 172 ---KITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLV 228
KIT K ++I NP+NP G R+ L+ +V + + +
Sbjct: 274 IRSKITS---------------RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIF 318
Query: 229 CDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS-LSKDMGLPGFRVG-IVYSFNDT 286
DEIY V + TS+A + ++ C + +S LSK + G+R+G ++ S N
Sbjct: 319 SDEIYDRLVMDGLEHTSIASLAPDLFC------VTFSGLSKSHMIAGYRIGWMILSGNKR 372
Query: 287 VVN---CGRKM-SSFGLVSS-QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLE 341
+ G M ++ L S+ Q ++ + L + V ++LV + +R +
Sbjct: 373 IAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNA 432
Query: 342 QVGINCLKSNAGLF-----------------FWMDLRHLLKEKTLEGEIALWRTIVNDVK 384
GI+ +K A + F +DL H D K
Sbjct: 433 IPGISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLH-------------------DKK 473
Query: 385 LNVSPGSSFQCTEPGWFRVCF-ANMDDDTLQVALNRIAAF 423
+ + G+ F +P FRV + ++D L+ A++R+A F
Sbjct: 474 VLIVQGTGFNWDKPDHFRVVYLPRLED--LEDAMDRLADF 511
|
Length = 517 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 82/400 (20%), Positives = 156/400 (39%), Gaps = 69/400 (17%)
Query: 55 IKDWITKNPYASICTAEGV-------EVFKDIAIF---------QDYHGLPEFRQAVA-K 97
+ I +NP +I +GV E + + F Q G+P +A+ K
Sbjct: 19 VGQLIRENP-GTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQK 77
Query: 98 FMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR- 155
+ + + ++ IV+ G+ A + + +PGD ++ +PYY F+ +++
Sbjct: 78 LQ---QDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYY--FNHEMAITM 132
Query: 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKS 215
G Q + V D +N+++ EA+E A A + I +P+NP G L++
Sbjct: 133 AGCQPILVPTD--DNYQLQPEAIEQAITPKTRAIVTI------SPNNPTGVVYPEALLRA 184
Query: 216 LVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII--YSLSKDMGLP 273
+ + I+ + DE Y + K S + + H I YSLSK G
Sbjct: 185 VNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGN------HTISLYSLSKAYGFA 238
Query: 274 GFRVGI----------VYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
+R+G + DT++ C +S QY L + ++
Sbjct: 239 SWRIGYMVIPIHLLEAIKKIQDTILICPPVVS---------QYAALGALQVGK---SYCQ 286
Query: 324 ETSKRLAKRHHNFTKGLEQVGINC-LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382
+ +A+ K L Q+ C L G F+ LK T + L + ++ +
Sbjct: 287 QHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYC-----FLKVNTDLNDFELVKQLIRE 341
Query: 383 VKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
++ V PG++F + R+ + + T + + R+
Sbjct: 342 YRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQ 381
|
Length = 389 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 32/209 (15%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPGDAFLV 140
DY E R+ +A F D + +++G GAT ELI F + P L+
Sbjct: 55 DYL---ELRKRIASFEQ--------LDLENVILGNGAT---ELI-FNIVKVTKPKKV-LI 98
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
+P +A ++R L +I NF LE E I + + NP
Sbjct: 99 LAPTFAEYERALK-AFDAEIEYAELTEETNFAANEIVLEEIKE-------EIDLVFLCNP 150
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
+NP G + ++ +K ++ +NI+L+ DE + + + + +I ++ ++LI
Sbjct: 151 NNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETIS----MINYLENFKNLI 206
Query: 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVN 289
II + +K +PG R+G + N +
Sbjct: 207 -IIRAFTKFFAIPGLRLGYGLTSNKNLAE 234
|
Length = 354 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+ R+AVA +M + ++T P+ I + G E++ LA P L+P P +
Sbjct: 109 GILPARRAVADYMNRDLPHKLT--PEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFP 166
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
+D ++ +G+++ ++I E +EA A N +++ NP+NP G
Sbjct: 167 HYDARAAY-SGLEVRKFDLLPEKEWEIDLEGIEAI------ADENTVAMVVINPNNPCGN 219
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
D LK + I ++ DE+Y T+F F S+ + + + + +
Sbjct: 220 VYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP-----VLTLAGI 274
Query: 267 SKDMGLPGFRVGIVYSFND 285
SK +PG+++G + + ND
Sbjct: 275 SKGWVVPGWKIGWI-ALND 292
|
Length = 462 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 75/290 (25%), Positives = 115/290 (39%), Gaps = 56/290 (19%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
G+ EF++A A++M K G DP ++ G+ A ++ C NPGD L+ P Y
Sbjct: 82 GIQEFKEAAARYMEK-VFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGY 140
Query: 146 AAFDRDLSWRTG-VQIVPVHCDISNNF-----KITREALEAAYERAQEASINIKGLIITN 199
+ G V +P+ + NNF I ++ E A K L +
Sbjct: 141 PVTGTHTKYYGGEVYNLPLLEE--NNFLPDLDSIPKDIKEKA-----------KLLYLNY 187
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSV---AEVIQEMD 254
P+NP G ++ + +V F + NI +V D YAA F F SV EV E
Sbjct: 188 PNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVE-- 245
Query: 255 CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV-----SSQ---TQY 306
I+SLSK + G+R+ V N+ +V +F V S Q Q
Sbjct: 246 --------IHSLSKAYNMTGWRLAFVVG-NELIVK------AFATVKDNNDSGQFIAIQK 290
Query: 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356
L E + + ++ ++R K L +VG G F+
Sbjct: 291 AGIYALDHPEITE----KIREKYSRRLDKLVKILNEVGFKAEMPG-GTFY 335
|
Length = 410 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 75/357 (21%), Positives = 128/357 (35%), Gaps = 61/357 (17%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYA 146
AV ++ + G DP+ IV G L A PG+ +V +P Y
Sbjct: 63 DSLYAAVINWLAQRHG--WQIDPEWIVFLPGV--VPSLFAAVRALTAPGEGVIVQTPVYP 118
Query: 147 AFDRDLSWRTGVQIV--PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
F + G ++V P+ D ++ E LE + + L++ +P NP+
Sbjct: 119 PFLSAVK-SNGRELVLNPLKLD-PGRYRFDLEDLE------DAITEKARLLLLCSPHNPV 170
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G R+ L L N+ +V DEI+A V+ K +A + E+ + ++
Sbjct: 171 GRVWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLASLSPEIAER--TVTLL- 227
Query: 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRK---------MSSFGLVSSQTQY--------- 306
S K + G + N + ++ + FG V+ + Y
Sbjct: 228 SPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQHGNLFGYVAFEAAYREGEPWLDA 287
Query: 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-LK 365
LLA + + + V+ F+ + I A W+D R L L
Sbjct: 288 LLAYLRGNRDLVEEFIAK----------------RLPQIRVRPPEATYLAWLDCRALGLD 331
Query: 366 EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
+ L + L ++PG SF G+ R+ F TL+ AL R+
Sbjct: 332 DA------DLRAFFIEQAGLGLNPGISFGDGGSGFMRLNFG-CPRSTLEQALERLRQ 381
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 27/225 (12%)
Query: 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNN 170
P I +G G+ LIM N GD + P P +A + S G +PV
Sbjct: 76 PTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMY-SVYSKIAGAVEIPVKLKEDYT 134
Query: 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCD 230
+ + E+ Q K + + NP+NP G+ ++R+ ++ I +V D
Sbjct: 135 YDVGSFI--KVIEKYQP-----KLVFLCNPNNPTGSVIERE---DIIKIIEKSRGIVVVD 184
Query: 231 EIYAATVFSSPKF--TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV 288
E Y +F ++ +VI E + +LI ++ +LSK GL G RVG + N+ ++
Sbjct: 185 EAYF-------EFYGNTIVDVINEFE---NLI-VLRTLSKAFGLAGLRVGYAVA-NENIL 232
Query: 289 NCGRKMSSFGLVSSQTQYLLASMLSDDEFVD--NFLVETSKRLAK 331
+ S ++S +Q + +L + N+++ +RL K
Sbjct: 233 KYLNLVKSPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIK 277
|
Length = 351 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 6e-11
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 30/221 (13%)
Query: 64 YASICTAEGVEVFK-DIAIFQD--YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG-G 119
+A + T G+ D +F+D G R A+A R +VM G
Sbjct: 26 FAELRTLCGIPAEDLDALVFRDGPSLGGEGLRAAIAD--------RWRGGDAHVVMTTHG 77
Query: 120 ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALE 179
++ A L++ L PGD +V P Y + L+ TG ++ P F+ +AL
Sbjct: 78 SSEAIYLVLTALLRPGDEVVVVDPAYHSLS-HLAVATGCEVRPWPLLAVRGFRPDLDALR 136
Query: 180 AAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239
A + + +++ P NP G ++ L L+ L+ D +A V
Sbjct: 137 AL------LTPRTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHD 190
Query: 240 SPKFTSVAEVIQEMDCNRDLIHIIY--SLSKDMGLPGFRVG 278
+P + + D +I +LSK GLPG RVG
Sbjct: 191 AP---PLPDPSALYD------RVISFGTLSKAFGLPGLRVG 222
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 87 GLPEFRQAVA----KFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVP 141
G+PE R A+A + G + +DPD +++ GAT A + L PGD L+
Sbjct: 62 GIPELRAAIAAQRRRRYG------LEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLI 115
Query: 142 SPYYAAFDRDLSWRTGVQI-VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
PYY ++ ++ ++ VP+ D F + +AL AA A LI+ +P
Sbjct: 116 EPYYDSYAAVIAMAGAHRVPVPLVPD-GRGFALDLDALRAAVTPRTRA------LIVNSP 168
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247
NP GT L L ++ + ++ ++ DE+Y VF + +A
Sbjct: 169 HNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLA 215
|
Length = 387 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 81/344 (23%), Positives = 143/344 (41%), Gaps = 34/344 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLVPSPY 144
G+ + R A+ + + V DP+ + G G L+ + NPGD +VP P
Sbjct: 72 GIYKLRLAICNWYKRKYN--VDLDPETEVVATMGSKEGYVHLVQ-AITNPGDVAIVPDPA 128
Query: 145 YA----AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA-QEASINIKGLIITN 199
Y AF G + + + + +F++ + E+A +E+S K +++
Sbjct: 129 YPIHSQAF-----ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNF 183
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P NP T+++ + LV+ + +++ D YA F K S+ EV + +D+
Sbjct: 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEV----EGAKDV 239
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319
Y+LSK + G+RVG V N +V +K+ S+ T +A+ ++ D D
Sbjct: 240 AVESYTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALDG--D 296
Query: 320 NFLV-ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL----RHLLKEKTLEGEIA 374
V E + KR + G K A +F W + RHL G +
Sbjct: 297 QSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHL-------GSLE 349
Query: 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALN 418
+ ++ + K+ VSPG F + R+ ++ Q A N
Sbjct: 350 FSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARN 393
|
Length = 403 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 61/287 (21%), Positives = 109/287 (37%), Gaps = 81/287 (28%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMF---CLANPGD-------AFL 139
E + A+A+ G DP+RI++G G++E++ PGD F
Sbjct: 71 ELKAALAEKFG--------VDPERIILG---NGSDEILELLARAYLGPGDEVIYSEHGFA 119
Query: 140 VPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN 199
V Y + G + V V + ++ +A+ AA + + I N
Sbjct: 120 V----YPIAAQ----AVGAKPVEVP---AKDYGHDLDAMLAAVTP------RTRLVFIAN 162
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P+NP GT L + ++ ++ + ++ +V DE YA V + E++ + N
Sbjct: 163 PNNPTGTYLPAEEVERFLAGV-PPDVLVVLDEAYAEYV-RRKDYEDGLELVAKFP-N--- 216
Query: 260 IHIIYS--LSKDMGLPGFRVGIVYS--------------FNDTVVNCGRKMSSFGLVSSQ 303
++ + SK GL G RVG + FN V+S
Sbjct: 217 --VVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPFN---------------VNSL 259
Query: 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350
+ L DD FV+ ++ +A T+ L ++G+ + S
Sbjct: 260 ALAAAVAALDDDAFVEKSRALNAEGMAW----LTEFLAELGLEYIPS 302
|
Length = 367 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 68/256 (26%), Positives = 111/256 (43%), Gaps = 47/256 (18%)
Query: 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250
+I G+++ NP NP G ++ L+ +V + ++ ++CDEIY V++ K ++EVI
Sbjct: 171 SIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVI 230
Query: 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN-------DTVVN--CGRKMSSFGLVS 301
++ L I SK++ PG R G + +N +N KM V
Sbjct: 231 GDV-PGIALKGI----SKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIE---VC 282
Query: 302 SQT--QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWM 358
S T Q + ++S E+ N+L E +KR KR + + L+ V G+ ++N F+M
Sbjct: 283 STTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGA--FYM 339
Query: 359 DL---RHLLKEK-TLEGEIALWRTIVND-VKLNVS------------------PGSSFQC 395
+ +L K +L E + V VK VS P SSF
Sbjct: 340 TVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT 399
Query: 396 TEPGWFRVCFANMDDD 411
G FRV D++
Sbjct: 400 ELNG-FRVTLLERDEE 414
|
Length = 433 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 64/209 (30%), Positives = 90/209 (43%), Gaps = 32/209 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANE-LIMF--CLANPGDAFLV--P 141
GLPE RQA+A+++ + DP+R V+ G E L F + NPG A LV P
Sbjct: 65 GLPELRQAIARWLERRFDLPTGVDPERHVLP--VNGTREALFAFAQAVINPGQAPLVVMP 122
Query: 142 SPYY-----AAFDRDLSWRTGVQIVPVHCDISNNFKITREAL-EAAYERAQEASINIKGL 195
+P+Y AA G + ++C N F +A+ E+ + R Q L
Sbjct: 123 NPFYQIYEGAAL------LAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQL-------L 169
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS----PKFTSVAEVIQ 251
+ +P NP G L DTLK L+ + + DE Y+ F A +
Sbjct: 170 FVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLG 229
Query: 252 EMDCNRDLIHIIYSLSKDMGLPGFRVGIV 280
D R L + +SLSK LPG R G V
Sbjct: 230 RDDFRRCL--VFHSLSKRSNLPGLRSGFV 256
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 85/360 (23%), Positives = 134/360 (37%), Gaps = 66/360 (18%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
G+ R+A+A + G + D D I + GAT A + L PGD +V P Y
Sbjct: 68 GVAALREAIAAKTARLYGRQY--DADSEITVTAGATEALFAAILALVRPGDEVIVFDPSY 125
Query: 146 AAFDRDLSWRTGVQI---VPVHCDIS-NNFKITREALEAAYERAQEASINIKG-LIITN- 199
D S+ +++ V + +F++ + AA I+ + LII N
Sbjct: 126 -----D-SYAPAIELAGGRAVRVALQPPDFRVDWQRFAAA--------ISPRTRLIILNT 171
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P NP GT +++L I +I+++ DE+Y VF SV E+ R+
Sbjct: 172 PHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLR-HPEL---RER 227
Query: 260 IHIIYSLSKDMGLPGFRVGIVYS-------FNDTVVNCGRKMSSFGLVSSQT--QYLLAS 310
++ S K + G++VG + F RK+ + + T Q LA
Sbjct: 228 AFVVSSFGKTYHVTGWKVGYCVAPAALSAEF--------RKVHQYNTFTVNTPAQLALAD 279
Query: 311 MLSDDEFVDNFLVETSKRL-----AKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK 365
L + E L AKR F L L F +D +
Sbjct: 280 YLRAEP-------EHYLELPAFYQAKRDR-FRAALANSRFKLLPCEGTYFQLVDYSAISD 331
Query: 366 EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP---GWFRVCFANMDDDTLQVALNRIAA 422
+ E W T + + P S F +P R+CFA ++TL A R+
Sbjct: 332 LD--DVEFCQWLTR--EHGVAAIPLSVF-YADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385
|
Length = 386 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GLP+ R+A+A+++ + +++ D + + G T A ++ + LA PG L+P P +
Sbjct: 74 GLPQARRAIAEYLSRDLPYKLSLDD--VFITSGCTQAIDVALSMLARPGANILLPRPGFP 131
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
++ ++R +++ V +++ +A+EA A N L+I NP NP G
Sbjct: 132 IYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVEAL------ADQNTVALVIINPGNPCGN 184
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY-- 264
LK + I ++ DE+Y F S F M ++ ++
Sbjct: 185 VYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVP-------MGVFGSIVPVLTLG 237
Query: 265 SLSKDMGLPGFRVG 278
SLSK +PG+R+G
Sbjct: 238 SLSKRWIVPGWRLG 251
|
Length = 409 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 6e-09
Identities = 74/363 (20%), Positives = 152/363 (41%), Gaps = 44/363 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+ R+A+A ++ +++ PD + + G A E+I+ LA P L+P P +
Sbjct: 75 GILPARRAIADYLSNDLPYQLS--PDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFP 132
Query: 147 AFDRDLSWRTGVQIVPVHCDI--SNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
+ ++ + H D+ +++ +A+EA A E +I ++I NP NP
Sbjct: 133 DVE---TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAI---ADENTI---AMVIINPGNPC 183
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G+ + L + I ++ DE+Y VF S F M ++ +I
Sbjct: 184 GSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-------MGLFASIVPVIT 236
Query: 265 --SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSD-------- 314
S+SK +PG+ +G + + + + + + + S + L +
Sbjct: 237 LGSISKRWMIPGWGLGWLVTCDPSGL-----LQICEIADSIKKALNPAPFPPTFIQAAIP 291
Query: 315 ---DEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLE 370
++ ++F +T L L+++ I C + G FF + +LL + +E
Sbjct: 292 EILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIE 351
Query: 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKES 430
++ + + L + PG + W R+ FA ++ +L+ L R+ +F + +
Sbjct: 352 DDMEFCLKLAKEESLIILPGVTVGLKN--WLRITFA-VEQSSLEDGLGRLKSFCG--RHA 406
Query: 431 EKP 433
+KP
Sbjct: 407 KKP 409
|
Length = 409 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISN 169
P+++ + G GA + + + +PGD LVP P +A + + G ++ ++
Sbjct: 81 SPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHG-EVREYPVSKAD 139
Query: 170 NFKITREALEAAY--ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHL 227
+F+ T + + AY ER + +T+P NP G+ + D +++L +++ + +
Sbjct: 140 DFEQTADTVLDAYDGERI---------VYLTSPHNPTGSEIPLDEVEALAERTDEETL-V 189
Query: 228 VCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278
V DE Y +F + ++ RD + ++ + SK GL G R+G
Sbjct: 190 VVDEAYG-------EFAERPSAVALVE-ERDDVAVLRTFSKAYGLAGLRLG 232
|
Length = 357 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-MFCLA--NPGDAFLVPSPYYA 146
R+A+A R DRI++G G+ +LI + C A PGD + Y
Sbjct: 75 ALREAIA--------ARTGVPADRIILG---NGSEDLIAVICRAVLRPGDRVVT---LYP 120
Query: 147 AFDRDLSWRT----GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
+F + T V+ V V D+ + AL AA RA + L+ +NPSN
Sbjct: 121 SFPLHEDYPTMMGARVERVTVTPDLGFDLD----ALCAAVARAP------RMLMFSNPSN 170
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P+G+ L D L ++ + + +V DE YA + + S ++ R L I
Sbjct: 171 PVGSWLTADQLARVLDATPPETL-IVVDEAYAEYA-AGDDYPSALTLL----KARGLPWI 224
Query: 263 IY-SLSKDMGLPGFRVG 278
+ + SK GL G RVG
Sbjct: 225 VLRTFSKAYGLAGLRVG 241
|
Length = 371 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 59/256 (23%)
Query: 36 NPGGVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQA 94
+P +I+LG EN L + I K + + + PE R+A
Sbjct: 32 DPESIIKLGSNENPLGPSPKAVEAIEK-------ELSKIHRYPEPD-------APELREA 77
Query: 95 VAKFMGKGRGGRVTFDPDRIVMGG-GATGANELIMFCLANPGDAFLVPSP---YYAAFDR 150
++K+ G + I++GG G + +M +PGD ++P+P YY +
Sbjct: 78 LSKYTG--------VPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK 129
Query: 151 DLSWRTGVQIVPVHCDISNNFKITREA-LEAAYERAQEASINIKGLIITNPSNPLGTTLD 209
+ PV+ +F + ++ L A E+ K + + P+NP G +
Sbjct: 130 AHGAK------PVYAKREEDFSLDVDSVLNAITEKT-------KVIFLCTPNNPTGNLIP 176
Query: 210 RDTLKSLVSFINDKNIH--LVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
+ ++ ++ ++ + DE Y F+ + E D +LI I + S
Sbjct: 177 EEDIRKIL-----ESTDALVFVDEAY--VEFAE---YDYTPLALEYD---NLI-IGRTFS 222
Query: 268 KDMGLPGFRVGIVYSF 283
K GL G R+G Y F
Sbjct: 223 KVFGLAGLRIG--YGF 236
|
Length = 361 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 34/203 (16%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT-GANELIMFCLAN-------PGDAF 138
G+P R+A A + + G V +PD V+ AT G+ E AN PGD
Sbjct: 69 GIPGLRRAQAAYYARRFG--VKLNPDTQVV---ATLGSKE----GFANMAQAITAPGDVI 119
Query: 139 LVPSPYYA--AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI-NIKGL 195
L P+P Y AF ++ ++ VP D E A ERA SI L
Sbjct: 120 LCPNPSYPIHAFGFIMAGGV-IRSVPAEPD---------EEFFPALERAVRHSIPKPIAL 169
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255
I+ PSNP D D K +V+F +I ++ D Y+ F SV +V D
Sbjct: 170 IVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDV 229
Query: 256 NRDLIHIIYSLSKDMGLPGFRVG 278
+ S+SK + G+R+G
Sbjct: 230 TVEFT----SMSKTFSMAGWRMG 248
|
Length = 405 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 49/352 (13%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLVPSPY 144
G+ R+A+A+ + G R +DP V+ + G I L +PGD + P
Sbjct: 67 GIAALREALAEKTERLYGAR--YDPASEVTVIASASEGLYAAIS-ALVHPGDEVIYFEP- 122
Query: 145 YAAFDRDLSWRTGVQI---VPVHCDIS-NNFKITREALEAAYERAQEASINIKG--LIIT 198
+FD S+ V++ PV +S +F++ + + AA I + +I+
Sbjct: 123 --SFD---SYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAA--------ITPRTRMIIVN 169
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258
P NP T L L + +I ++ DE+Y VF + S+A +R+
Sbjct: 170 TPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMA-------RHRE 222
Query: 259 LIH---IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLLASMLS 313
L I+ S K + G+RVG + +++ RK+ F + S+ T Q+ A L+
Sbjct: 223 LAERSVIVSSFGKSYHVTGWRVGYCLA-PAELMDEIRKVHQFMVFSADTPMQHAFAEALA 281
Query: 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEI 373
+ ++L + KR + L L S F RH E + +
Sbjct: 282 EP---ASYLGLGAFYQRKRDL-LARELAGSRFELLPSEGSFFMLARFRHFSDES--DSDF 335
Query: 374 ALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANMDDDTLQVALNRIAAF 423
L R I D ++ P S+F T+ G R+ F+ DD TL R+ +
Sbjct: 336 VL-RLIR-DARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCSL 384
|
Length = 384 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 57/259 (22%), Positives = 98/259 (37%), Gaps = 67/259 (25%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSP-- 143
R+A+A+F G D + I +G G++ELI + + G ++ P
Sbjct: 56 TSDPLREAIAEFYG--------LDAENIAVG---NGSDELISYLVKLFEGKHIVITPPTF 104
Query: 144 ----YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN 199
+YA + G+ ++ V + +F I E + E+A+ AS + I +
Sbjct: 105 GMYSFYAKLN-------GIPVIDV--PLKEDFTIDGERIA---EKAKNASA----VFICS 148
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P+NP G + + ++ + +V DE YA FS I +D +L
Sbjct: 149 PNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAE--FSGKSL------IGLIDEYPNL 196
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319
I ++ + SK GL G R G + + + R F L
Sbjct: 197 I-LLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPPFSL-------------------- 235
Query: 320 NFLVETSKRLAKRHHNFTK 338
N L RLA H++ +
Sbjct: 236 NILTMKIVRLALDHYDLIE 254
|
Length = 337 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 45/172 (26%)
Query: 123 ANELIMFCLANPGD--AFLVP--SPY--------YAAFDRDLSWRTGVQIVPVHCDISNN 170
N L+ GD A + P +PY Y +++V ++ D N
Sbjct: 183 ENGLL-----KAGDKIALMTPIFTPYLEIPELPRY-----------DLEVVHINADEENE 226
Query: 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLV-- 228
++ LE + +IK L + NPSNP + ++L+ + +N+K L+
Sbjct: 227 WQYPDSELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMII 280
Query: 229 CDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIV 280
D++Y V F S+ V + I ++YS SK G G+R+G++
Sbjct: 281 TDDVYGTFV---DDFRSLFAV-----LPYNTI-LVYSFSKYFGATGWRLGVI 323
|
Length = 527 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 37/205 (18%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG--ANELIMFCLANPGDAFLVPSPY 144
G P R+A+A+ +GR DP+ I + GA +F P + V P
Sbjct: 76 GYPFLREAIAENDYRGR-----IDPEEIFISDGAKCDVFRLQSLF---GPDNTVAVQDPV 127
Query: 145 YAAFDRD---LSWRTGV--------QIVPVHCDISNNFKITREALEAAYERAQEASINIK 193
Y A+ D ++ R GV +I + C NNF E +E I+I
Sbjct: 128 YPAY-LDSNVMAGRAGVLDDDGRYSKITYLPCTAENNF---------IPELPEEPHIDI- 176
Query: 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253
+ + +P+NP GT L ++ LK LV + N+ ++ D Y+A + S+ E+
Sbjct: 177 -IYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAR 235
Query: 254 DCNRDLIHIIYSLSKDMGLPGFRVG 278
C + S SK G G R+G
Sbjct: 236 FCAIE----FRSFSKTAGFTGVRLG 256
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 34/190 (17%)
Query: 92 RQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA--AFD 149
R A+A+ G + + I++G GA +L+M C+ +PGD + P + FD
Sbjct: 92 RAALAEDSG--------LESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFD 143
Query: 150 RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL- 208
++ G +++ V + +F + + A E + K L +T+P+NP G+ +
Sbjct: 144 AAVN---GAEVIKV--PRTPDFSLDVPRIVEAVETHKP-----KLLFLTSPNNPDGSIIS 193
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268
D D LK L + I +V DE Y FS+ + + + V + D + ++ + SK
Sbjct: 194 DDDLLKIL-----ELPILVVLDEAYIE--FSTQE-SRMKWVKK-----YDNLIVLRTFSK 240
Query: 269 DMGLPGFRVG 278
GL G RVG
Sbjct: 241 RAGLAGLRVG 250
|
Length = 380 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 41/207 (19%), Positives = 86/207 (41%), Gaps = 23/207 (11%)
Query: 82 FQDYHGLPEFRQAVA----KFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDA 137
+ +Y G + R+ +A F G D +++ G GA L + GD
Sbjct: 74 YTEYRGDADIRELLAARLAAFTGAPVDAA-----DELIITPGTQGALFLAVAATVARGDK 128
Query: 138 FLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK---ITREALEAAYERAQEASINIKG 194
+ P Y A +R L ++VPV D + K + + LE A++ ++
Sbjct: 129 VAIVQPDYFA-NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRV 181
Query: 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254
+ +NP+NP G + + + + ++ D++Y+ ++ +T ++ +
Sbjct: 182 FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTH----LRALP 237
Query: 255 CNRDLIHIIYSLSKDMGLPGFRVGIVY 281
+ + + I SK L G+R+G+ +
Sbjct: 238 IDPENVITIMGPSKTESLSGYRLGVAF 264
|
Length = 405 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 23/182 (12%)
Query: 110 DPDRIVMGGGATGANELIMFCLAN---PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166
I+ G G T E I F + + P A +V +P +A + R L G +I
Sbjct: 71 PASWILAGNGET---ESI-FAVVSGLKPRRAMIV-TPGFAEYRRALQQ-VGCEIRRYSLR 124
Query: 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIH 226
++ +++T +A+ A + L + P+NP G +R L+++ NI
Sbjct: 125 EADGWQLT-DAILEALTPDLDC------LFLCTPNNPTGLLPERQLLQAIAERCKSLNIA 177
Query: 227 LVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT 286
L+ DE + + F + + + ++ SL+K +PG R+G + + +D
Sbjct: 178 LILDEAFIDFIPDETGFIP---QLADNPH----LWVLRSLTKFYAIPGLRLGYLVNSDDA 230
Query: 287 VV 288
V
Sbjct: 231 AV 232
|
Length = 356 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHL--VCDEIYAATVFSSPKFTS-VAE 248
IK L + NPSNP + ++++ +V + + L + D++Y V F S AE
Sbjct: 241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFV---DDFRSLFAE 297
Query: 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIV 280
+ +YS SK G G+R+G +
Sbjct: 298 LPYNTIG-------VYSFSKYFGATGWRLGTI 322
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 30/197 (15%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-----MFCLANPGDAFLVPSPY 144
+QA+A+++ + G P I +G G++ELI CL G + LV P
Sbjct: 70 ALKQAIAEYVNESAAGSSQITPANISVG---NGSDELIRSLLIATCLGGEG-SILVAEPT 125
Query: 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
++ + L+ G+ +V V D F+I A ++A E+ Q + + + + +P++P
Sbjct: 126 FSMY-GILAQTLGIPVVRVGRD-PETFEIDLAAAQSAIEQTQNPPVRV--VFVVHPNSPT 181
Query: 205 G---TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
G T + + L+SL ++I +V DE Y F + T V E+ Q
Sbjct: 182 GNPLTAAELEWLRSL-----PEDILVVIDEAY----FEFSQTTLVGELAQ-----HPNWV 227
Query: 262 IIYSLSKDMGLPGFRVG 278
I+ + SK L RVG
Sbjct: 228 ILRTFSKAFRLAAHRVG 244
|
Length = 374 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 33/174 (18%)
Query: 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKI 173
IV+ G T A LI ++P Y ++R ++ +I+ D
Sbjct: 57 IVITAGITEALYLIGILALR-DRKVIIPRHTYGEYER-VARFFAARIIKGPND------- 107
Query: 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233
E+ +E + NP+NP G + LK L+ + D+N L+ DE +
Sbjct: 108 --------PEKLEELVERNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAF 159
Query: 234 AATV--FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND 285
V SP+ + I + + +K GLPG RVG V F +
Sbjct: 160 IDFVKKPESPEG--------------ENIIKLRTFTKSYGLPGIRVGYVKGFEE 199
|
Length = 311 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 64/283 (22%), Positives = 106/283 (37%), Gaps = 46/283 (16%)
Query: 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI----MFCLANPGDAFLVP 141
G PE R+A+ ++ + RG DP ++ G+ EL+ PGD ++P
Sbjct: 62 AGTPELREAIVGWLARRRGVTGL-DPAAVL---PVIGSKELVAWLPTLLGLGPGDVVVIP 117
Query: 142 SPYYAAFDRDLSWRTGVQIV---PVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
Y ++ G ++ V D + + +
Sbjct: 118 ELAYPTYE------VGARLAGATVVRAD----------------SLTELGPQRPALIWLN 155
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV--AEVIQEMDCN 256
+PSNP G L D L+ +V++ ++ + DE Y + + S+ V +
Sbjct: 156 SPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPV-SILDPRVC---GGD 211
Query: 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC--GRKMSSFGLVSSQTQYLLASMLSD 314
+ ++SLSK L G+R G V V RK + +V + Q + + L D
Sbjct: 212 HTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHAGM-MVPAPVQAAMVAALGD 270
Query: 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357
D V E +R A+R LE G S AGL+ W
Sbjct: 271 DAHVR----EQRERYARRRAVLRPALEAAGFRVDHSEAGLYLW 309
|
Length = 364 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 110 DPDRIVMGGGATGANELIM--FCLANPG-DAFLVPSPYYAAFDRDLSWRT-GVQIVPVHC 165
P+++++ GA EL++ FC PG DA L P Y + +S T GV+I V
Sbjct: 73 KPEQVLVSRGADEGIELLIRAFC--EPGKDAILYCPPTYGMYS--VSAETIGVEIRTV-- 126
Query: 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNI 225
+N+++ A+ + +K + + +P+NP G ++ L++L+ K I
Sbjct: 127 PTLDNWQLDLPAIADNLD-------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAI 179
Query: 226 HLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278
+V DE Y +F A + + L+ I+ +LSK L G R G
Sbjct: 180 -VVADEAYI-------EFCPQASLAGWLAEYPHLV-ILRTLSKAFALAGLRCG 223
|
Length = 351 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 36/211 (17%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-------NPGDAFL 139
GLP R+A+A ++ + R G DP V+ G+ E + F A PG +
Sbjct: 66 GLPALREAIAAWL-ERRYGLPALDPATQVLP--VNGSREAL-FAFAQTVIDRDGPGPLVV 121
Query: 140 VPSPYY-----AAFDRDLSWRTGVQIVPVHCDISNNFKITREAL-EAAYERAQEASINIK 193
P+P+Y AA L+ G + ++CD +NNF +A+ + R Q
Sbjct: 122 CPNPFYQIYEGAAL---LA---GAEPYFLNCDPANNFAPDFDAVPAEVWARTQL------ 169
Query: 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF--SSPKFTSVAEVIQ 251
L + +P NP G L D K L + + + DE Y+ F ++P + E
Sbjct: 170 -LFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPP-LGLLEAAA 227
Query: 252 EM--DCNRDLIHIIYSLSKDMGLPGFRVGIV 280
E+ D + L+ + +SLSK +PG R G V
Sbjct: 228 ELGRDDFKRLV-VFHSLSKRSNVPGLRSGFV 257
|
Length = 396 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 22/158 (13%)
Query: 128 MFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK--ITREALEAAYERA 185
+F NP A+ P+P+Y ++ + + +++ + N+F + + L
Sbjct: 104 LFDKQNPTIAY--PNPFYQIYE-GAAIASRAKVLLMPLTKENDFTPSLNEKEL------- 153
Query: 186 QEASINIKGLIITN-PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244
QE L+I N P+NP G TL + L V + L+ DE Y+ ++P
Sbjct: 154 QEVD-----LVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPP-P 207
Query: 245 SVAEVIQEMDCNRDL--IHIIYSLSKDMGLPGFRVGIV 280
S+ E + N + +I S+SK PG R G +
Sbjct: 208 SLLEASILVG-NESFKNVLVINSISKRSSAPGLRSGFI 244
|
Length = 374 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 62/283 (21%), Positives = 110/283 (38%), Gaps = 59/283 (20%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-MFCLA--NPGDAFLVPSP-- 143
PE R VAK +G D ++++ G G +E+I M A NPG ++ P
Sbjct: 67 PELRTKVAKHLG--------VDEEQLLFG---AGLDEVIQMISRALLNPGTNTVMAEPTF 115
Query: 144 --YY------AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195
Y A R++ + G LEA + E K +
Sbjct: 116 SQYRHNAIIEGAEVREVPLKDG-----------------GHDLEAMLKAIDE---QTKIV 155
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253
I NP+NP GT ++ + L+SF+ ++ +V DE Y V ++ + ++++
Sbjct: 156 WICNPNNPTGTYVNHE---ELLSFLESVPSHVLVVLDEAYYEYV-TAEDYPDTLPLLEKY 211
Query: 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLS 313
+ +LI ++ + SK GL RVG + + + F + QY + L
Sbjct: 212 E---NLI-VLRTFSKAYGLAALRVGYGIASEELIEKLNIARPPFN-TTRIAQYAAIAALE 266
Query: 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356
D F+ E ++ A+ + ++ G+ S F
Sbjct: 267 DQAFLK----ECVEKNAEGLEQYYAFCKEYGLFYYPSQTNFIF 305
|
Length = 359 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254
+ ++ P+NP G L + L L + I L+ D Y F F+
Sbjct: 183 ICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDA-----TPL 236
Query: 255 CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV 288
N ++I + SLSK +GLPG R GI+ + N+ V+
Sbjct: 237 WNENIILCM-SLSK-LGLPGSRCGIIIA-NEKVI 267
|
Length = 417 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 37/196 (18%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYA 146
E R A+A+ P+ I+ G GA EL+ + LA A + +P +
Sbjct: 61 ELRLALAQHHQ--------LPPEWILPGNGAA---ELLTWAGRELAQ-LRAVYLITPAFG 108
Query: 147 AFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINI--KGLIITNPSNP 203
+ R + R G + + + + + GL++ NP NP
Sbjct: 109 DYRR--ALRAFGATVKEL------PLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPHNP 160
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTSVAEVIQEMDCNRDLIHI 262
G R+ + L+ ++ +V DE A F P S+ + E +LI I
Sbjct: 161 TGKLWSREAILPLL----EQFALVVVDE--AFMDFLPPDAEQSLIPCLAE---YPNLI-I 210
Query: 263 IYSLSKDMGLPGFRVG 278
+ SL+K LPG R+G
Sbjct: 211 LRSLTKFYSLPGLRLG 226
|
Length = 360 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 27/192 (14%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD 149
E + +A+ + G D+ V TGANE + L PGD +V + + +
Sbjct: 4 ELEEKLARLLQPGN--------DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRY 55
Query: 150 RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD 209
+ G + VPV L+ A +A N+ ++IT + +
Sbjct: 56 WVAAELAGAKPVPV-----PVDDAGYGGLDVAILEELKAKPNVALIVITPNTT---SGGV 107
Query: 210 RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269
LK + + I L+ D A S A + + D++ +SL K+
Sbjct: 108 LVPLKEIRKIAKEYGILLLVDAASAG-------GASPAPGVLIPEGGADVVT--FSLHKN 158
Query: 270 MGLPGFRVGIVY 281
+G G G+V
Sbjct: 159 LG--GEGGGVVI 168
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 41/207 (19%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIM--FCLANPG-DAFLVPSPYY 145
PE A + + G P++I+ GA A EL++ FC PG D+ P Y
Sbjct: 63 PELINAYSAYAG--------VAPEQILTSRGADEAIELLIRAFCE--PGQDSIACFGPTY 112
Query: 146 AAFDRDLSWRT---GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
+ +S T GV+ +P ++ ++++ + +E K + I NP+N
Sbjct: 113 GMYA--ISAETFNVGVKALP----LTADYQLPLDYIEQLD--------GAKLVFICNPNN 158
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P GT +DR ++ L+ D + V DE Y + P++ SVA+++ +L+ +
Sbjct: 159 PTGTVIDRADIEQLIEMTPDAIV--VVDEAY---IEFCPEY-SVADLLASYP---NLV-V 208
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVN 289
+ +LSK L G R G + N+ ++
Sbjct: 209 LRTLSKAFALAGARCGFTLA-NEELIE 234
|
Length = 354 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVHCDISNNFKITREAL 178
T AN+L + GD + P + FD + G Q VP+ + K+ E L
Sbjct: 57 TMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGAQPVPL--PGAEAGKLDLEDL 114
Query: 179 EAAYER-AQEASINIKGLIITNPSN-PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236
EAA + + N N G + + L+ + + + I L D A
Sbjct: 115 EAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLD---GAR 171
Query: 237 VFSSPKFT--SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND 285
+ ++ V E+ D + SLSK +G P VG V + +D
Sbjct: 172 LANAAVALGVIVKEITSYAD------SVSMSLSKGLGAP---VGSVLAGSD 213
|
Length = 288 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 54/270 (20%), Positives = 94/270 (34%), Gaps = 79/270 (29%)
Query: 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254
+ ++ P+NP G L + L+ L + NI L+ D Y F F+ +
Sbjct: 183 ICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYG-PPFPGIIFSEATPLWNP-- 239
Query: 255 CNRDLIHIIY--SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF----GLVSSQT-QYL 307
+II SLSK +GLPG R GIV + + + +S+ L + +
Sbjct: 240 ------NIILCMSLSK-LGLPGVRCGIVIADEEII----EALSNMNGIISLAPGRLGPAI 288
Query: 308 LASMLSDDEFVDNFLVETSKRLAK----RHHNFTKGLEQV---GINCL--KSNAGLFFW- 357
A M+ + L+ S+ + + + L + CL K +F W
Sbjct: 289 AAEMIESGD-----LLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWL 343
Query: 358 ---------MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF------------QCT 396
+L LK + +V PG F QC
Sbjct: 344 WFKDLPITTEELYQRLKAR---------GVLVV-------PGHYFFPGLDEDWPHAHQC- 386
Query: 397 EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
R+ + DD+ ++ + +A V++
Sbjct: 387 ----IRMNYVQ-DDEEIEKGIAILAEEVEK 411
|
Length = 416 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250
+ K + I NP+NP GT ++ L + I++ N +V DE Y V + E +
Sbjct: 151 DTKIVWICNPNNPTGTYVNDRKLTQFIEGISE-NTLIVIDEAYYEYVTAK----DFPETL 205
Query: 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLAS 310
++ +++++ ++ + SK GL FRVG + + F VSS Q
Sbjct: 206 PLLEKHKNIL-VLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPFN-VSSLAQKAATI 263
Query: 311 MLSDDEFVDNFLVETSKRLAKRHHNFTK 338
DDEF++ +V + +++ +F K
Sbjct: 264 AFGDDEFIEE-IVRVNTEGLRQYESFCK 290
|
Length = 366 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.98 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.98 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.96 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.96 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.96 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.96 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.95 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.95 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.94 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.94 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.94 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.94 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.93 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.93 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.93 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.93 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.93 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.93 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.93 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.93 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.93 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.92 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.92 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.91 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.91 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.91 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.91 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.91 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.9 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.9 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.9 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.9 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.9 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.9 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.9 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.9 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.9 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.89 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.89 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.89 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.89 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.89 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.89 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.89 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.88 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.88 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.88 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.88 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.87 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.87 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.87 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.87 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.86 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.86 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.86 | |
| PLN02651 | 364 | cysteine desulfurase | 99.86 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.86 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.86 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.85 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.85 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.85 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.85 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.84 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.84 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.84 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.84 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.84 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.83 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.83 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.83 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.83 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.83 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.82 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.82 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.81 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.81 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.81 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.81 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.81 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.81 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.81 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.8 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.79 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.79 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.79 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.79 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.78 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.77 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.76 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.76 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.76 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.75 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.74 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.74 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.74 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.74 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.74 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.73 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.73 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.73 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.72 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.72 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.72 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.71 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.71 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.7 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.69 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.69 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.69 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.69 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.69 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.68 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.68 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.67 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.67 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.67 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.67 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.66 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.66 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.65 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.65 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.64 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.64 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.62 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.62 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.62 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.62 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.62 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.61 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.61 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.61 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.58 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.57 | |
| PLN02263 | 470 | serine decarboxylase | 99.57 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.57 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.57 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.56 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.56 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.55 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.55 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.54 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.53 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.53 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.53 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.53 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.53 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.52 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.52 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.51 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.51 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.51 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.51 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.51 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.5 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.49 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.49 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.49 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.48 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.48 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.48 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.48 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.47 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.47 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.47 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.47 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.46 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.46 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.46 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.46 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.44 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.44 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.42 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.42 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.42 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.41 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.41 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.4 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.4 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.4 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.38 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.33 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.32 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.32 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.32 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.24 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.23 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.22 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.22 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.21 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.2 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.2 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.2 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.18 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.12 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.1 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.04 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.01 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.96 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.94 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.9 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.87 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.84 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.78 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.75 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.7 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.67 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.65 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.65 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.6 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.52 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.46 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.37 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.18 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.99 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.97 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.59 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.49 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.19 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 96.68 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 95.84 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 95.04 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 88.07 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 84.43 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 81.47 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 81.04 |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-106 Score=769.28 Aligned_cols=425 Identities=61% Similarity=1.096 Sum_probs=416.8
Q ss_pred ccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccc
Q 011801 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAI 81 (477)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (477)
.+||++|.+++|||+|+||.||++|++||||+++||.|+||||++||++|+|++++|+.++|++..|+.+|...+++++.
T Consensus 37 ~~lS~~~~~~~~~e~S~yf~g~~~y~~npy~~~~Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la~ 116 (471)
T KOG0256|consen 37 NLLSSKAVDDKHGEDSSYFYGWKAYEKNPYDPIKNPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELAM 116 (471)
T ss_pred hhcccccccccccccchHHHHHHhcccCCCCCCCCchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
|+||+|++.+|+++|+||.+.+|+++.++|+++++++|+|.|++++++||++|||++|||+|+|++|++.++|++|++++
T Consensus 117 fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveiv 196 (471)
T KOG0256|consen 117 FQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIV 196 (471)
T ss_pred cccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
||.|.++++|++|.++||++++++++.+.++|+|+++||+||.|++++++++..+++||.++|+|||+||+|++.+|+..
T Consensus 197 pv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~ 276 (471)
T KOG0256|consen 197 PVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKS 276 (471)
T ss_pred EEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.|.|+.++..+.+..++++|+++|+||+||+||+|+|.|++.|+.++.++++|++|+.+|+++|+.++.+|+|..|+++|
T Consensus 277 ~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~y 356 (471)
T KOG0256|consen 277 EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREY 356 (471)
T ss_pred CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHH
Confidence 99999999875544679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
++++.+|++.|++++.++|+++||+|.++++|+|+|+++++.++..+++.|++||++++.+.||+++||++|+|.+||||
T Consensus 357 l~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWF 436 (471)
T KOG0256|consen 357 LRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWF 436 (471)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+||+++.++.++.+++||+.++.+
T Consensus 437 RvcFAn~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 437 RVCFANMSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999984
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-94 Score=747.01 Aligned_cols=469 Identities=69% Similarity=1.187 Sum_probs=423.4
Q ss_pred CccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccc
Q 011801 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIA 80 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (477)
|++||++|++++|||+|+||+||++|+++|||+..||+|+|+|+++||++++|++++|+++++++.+|..+++..+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (496)
T PLN02376 9 GAILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIA 88 (496)
T ss_pred hhhhhhhhcccccCCCCchHHHHHHHhCCCCCcccCCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
.|++++|.++||++||+|+++.+|.++.++|++|++|+|+++|+++++++|++|||.|++++|+|++|...+++..|+++
T Consensus 89 ~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~v 168 (496)
T PLN02376 89 NFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEI 168 (496)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEE
Confidence 99999999999999999999988877889999999999999999999999999999999999999999998886559999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
++++++.+++|++|+++++++++++.+.+.++|+|++||||||||++++.+++++|+++|++++++||+||+|++++|++
T Consensus 169 v~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~ 248 (496)
T PLN02376 169 IPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG 248 (496)
T ss_pred EEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence 99999877789999999999987765556789999999999999999999999999999999999999999999999988
Q ss_pred CCcccHHHhhhhcc---CCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhh
Q 011801 241 PKFTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 241 ~~~~s~~~~~~~~~---~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~ 317 (477)
+.+.++.++..+.+ ++.+++++++||||+||+||+|+||++++++.+....+++..++.+|+++|.+++.+|++++|
T Consensus 249 ~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~ 328 (496)
T PLN02376 249 GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQF 328 (496)
T ss_pred CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhH
Confidence 78888887754211 123578889999999999999999999988888888888888888999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc-cCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE-KTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~-~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
+++++++.+++++++++.+.+.|++.|+++.++++|+|+|++++..+.. .+++.|.++++.+++++||.|.||+.|++.
T Consensus 329 ~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~ 408 (496)
T PLN02376 329 VDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCT 408 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCC
Confidence 8899999999999999999999999999999999999999999876544 556677899999999999999999999988
Q ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhcCcc--------------cccccc-ccceeeeccccccccccCCCCCC
Q 011801 397 EPGWFRVCFANMDDDTLQVALNRIAAFVQQDKESEK--------------PTKKRW-QQNLRVSFSSRIYEQGVMSPHMM 461 (477)
Q Consensus 397 ~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 461 (477)
+++||||||+.+++++++++++||++++.++++... .++++| +++||||| .|++|+. +|
T Consensus 409 ~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~ 482 (496)
T PLN02376 409 EPGWFRICFANMDDDTLHVALGRIQDFVSKNKNKIVEKASENDQVIQNKNAKKLKWRQSNLRLSF-RRLYEDG-----LS 482 (496)
T ss_pred CCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhcchhhhhccceeecc-chhhhcc-----cc
Confidence 899999999988899999999999999976554211 125779 46799998 4568875 57
Q ss_pred CCCCCCCCCccccc
Q 011801 462 SPHSPIPQSPLVRA 475 (477)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (477)
|||+|+||||||||
T Consensus 483 ~~~~~~~~~~~~~~ 496 (496)
T PLN02376 483 SPGIMSPHSPLLRA 496 (496)
T ss_pred CCCCCCCCCcccCC
Confidence 99999999999997
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=624.37 Aligned_cols=428 Identities=58% Similarity=1.032 Sum_probs=391.8
Q ss_pred ccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccc
Q 011801 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAI 81 (477)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (477)
.+||+.++++.|+++++||.||++|..||||+..||+|+|+||++||.++.|++.+|++++++.++|...+...+.++..
T Consensus 11 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (447)
T PLN02607 11 VGLSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENAL 90 (447)
T ss_pred hhhhhhhhhcccCCCchHHHHHHHhcCCCCCcccCCCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999887776556556677888
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
|+++.|.++||+++|+|+++.++..++++|++|++|+|+++|++++++++++|||.|++++|+|++|...+.++.|++++
T Consensus 91 y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv 170 (447)
T PLN02607 91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIV 170 (447)
T ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEE
Confidence 99999999999999999998888767899999999999999999999999999999999999999999988876699999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
+|+++++++|.+++++++++++++++.+.++|+|+++|||||||.+++++++++|+++|+++|++||+||+|++++|+.+
T Consensus 171 ~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~ 250 (447)
T PLN02607 171 PIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSAS 250 (447)
T ss_pred EEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC
Confidence 99998778899999999999998888888999999999999999999999999999999999999999999999889887
Q ss_pred CcccHHHhhhhcc-C-CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHH
Q 011801 242 KFTSVAEVIQEMD-C-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 242 ~~~s~~~~~~~~~-~-~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+|.|+.+++.+.+ . ..+++|+++||||+||+||+|+||+++.++.+...++++..+..+|+++|.+++.+|++++|++
T Consensus 251 ~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~ 330 (447)
T PLN02607 251 EFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTE 330 (447)
T ss_pred CcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHH
Confidence 8889887754321 1 2578999999999999999999999998887877777777777789999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+++++++++++++++.+++.|++.|+++.++++|+|+|++++..+...+.+.|.++|..+++++||.|.||+.|++.++|
T Consensus 331 ~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g 410 (447)
T PLN02607 331 NYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPG 410 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCC
Confidence 89999999999999999999999999999999999999999876554455667789999998889999999999988899
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
||||||+.+++++++++++||++++++++.
T Consensus 411 ~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 411 WFRVCFANMSEDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999987899999999999999987554
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=576.01 Aligned_cols=450 Identities=58% Similarity=1.052 Sum_probs=388.2
Q ss_pred CccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccc
Q 011801 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIA 80 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (477)
|..||..+++..++++.+||+||.+|..++|++..||.|+|+|+.+||+++.+.+.++++.+++...+...+......+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (468)
T PLN02450 1 MKLLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELA 80 (468)
T ss_pred CcccchhhcccccCCCCchHHHHHHHhcCCCCcccCCCeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhh
Confidence 77899999999999999999999999999999999999999999999999999999999887553222211112223567
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
.|+++.|.++||++||+|+++.++.++.+++++|++|+|+++++..++.++++|||.|++++|+|+.|...+....|+++
T Consensus 81 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~ 160 (468)
T PLN02450 81 LFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEI 160 (468)
T ss_pred cCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEE
Confidence 79999999999999999999888877778999999999999999999999999999999999999999888875449999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
++++++.+++|.+++++++++++++.+.+.++|+|++||||||||.+++.+++++|+++|++++++||+||+|+++.|++
T Consensus 161 v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~ 240 (468)
T PLN02450 161 VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240 (468)
T ss_pred EEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence 99999877889999999999998766666789999999999999999999999999999999999999999999988887
Q ss_pred CCcccHHHhhhhccC----CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChh
Q 011801 241 PKFTSVAEVIQEMDC----NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~----~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~ 316 (477)
+.+.++.....+..+ ..+++++++||||+||+||+|+||++++++.+.....+...++.+|+++|.++..+|++++
T Consensus 241 ~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~ 320 (468)
T PLN02450 241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKK 320 (468)
T ss_pred CCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCch
Confidence 667776655421100 2578999999999999999999999998877766666666666689999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
+.+.++++.+++++++++.+.+.|++.|+.+.++++|+|+|++++..++...++.+.+++..++++.||.|.||+.|++.
T Consensus 321 ~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~ 400 (468)
T PLN02450 321 FTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCT 400 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCC
Confidence 76668899999999999999999999999998999999999999876665566777789999999899999999999887
Q ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc-----Cc--------cccccccccceeeeccccccc
Q 011801 397 EPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE-----SE--------KPTKKRWQQNLRVSFSSRIYE 452 (477)
Q Consensus 397 ~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~ 452 (477)
+++||||||+..+++++++++++|++++.+... .. ++...+| ..||+|.+|..|
T Consensus 401 ~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 467 (468)
T PLN02450 401 EPGWFRVCFANMSEETLDLAMKRLKSFVESDSGRRINKSSHQRLKNLRRKTVSKW--VFRLSFHDREPE 467 (468)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHhccccccccchhcccccccchhhhcc--ceEEeeccCCcC
Confidence 889999999977899999999999999965331 10 1115678 588998887544
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=459.33 Aligned_cols=355 Identities=27% Similarity=0.495 Sum_probs=308.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc-E
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-I 114 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-i 114 (477)
.++|+|+++++.++ ++.+.+++.+... ... .|.+..|.++||++||+++.+.+| +.+++++ |
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~-------------~~~~~Y~~~~G~~~LReaia~~~~~~~~--~~~~~~~ei 92 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALE-------------EGGTHYTPSAGIPELREAIAEKYKRRYG--LDVDPEEEI 92 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHh-------------cccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeE
Confidence 67999999998775 4556666555321 111 677999999999999999999887 6678877 9
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCee
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
++|+|+++|+..++.++++|||.|++++|+|+.|...+... |.++++++++.. ++|.+|+++|++++.+ ++|
T Consensus 93 ivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~-gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk 165 (393)
T COG0436 93 IVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTK 165 (393)
T ss_pred EEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEEeCCcCccCCcCCHHHHHhhcCc------cce
Confidence 99999999999999999999999999999999999999987 999999998655 5999999999999875 899
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|+++|||||||.+++++++++|+++|++|+++||+||+|.+++|++..+.|+.++.. ..++++.++||||.++|+
T Consensus 166 ~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~----~~~~~i~i~s~SK~~~mt 241 (393)
T COG0436 166 AIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAG----ARDRTITINSFSKTYGMT 241 (393)
T ss_pred EEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCC----CcceEEEEeccccccccc
Confidence 9999999999999999999999999999999999999999999999876788877643 358899999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK- 349 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~- 349 (477)
|||+||++++++.+.+.+.+.... ...+.+.|.++..+|+..+. ...++..++.+++||+.+.+.|.+. |+.+..
T Consensus 242 GwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~ 320 (393)
T COG0436 242 GWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKP 320 (393)
T ss_pred ccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccC
Confidence 999999999866666666544332 34778999999999998743 4557777789999999999999988 599888
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++|++|+|++++.. .+..+++..++++.||.|.||+.|+.. +.++||++++. +++++++++++|.++++.
T Consensus 321 p~Ga~Y~~~~i~~~------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 321 PEGAFYLFPKIPEL------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAE 391 (393)
T ss_pred CCeeEEEEeecCCC------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHHHHh
Confidence 88999999999965 223479999999999999999999985 78999999997 669999999999999876
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=427.06 Aligned_cols=354 Identities=21% Similarity=0.347 Sum_probs=286.5
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i 114 (477)
+.++|+|+.+++.++ ++.+.+.+.+.... .....|++..|.++||++||+|+.+.+| +.++++ +|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHD-----------PSTHGYLLFHGTLDFREAAAQWYEQRFG--LAVDPETEV 95 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------cccCCCCCCCCCHHHHHHHHHHHHHhhC--CcCCCcCeE
Confidence 456899999999886 45566666542110 1235799889999999999999987776 557898 69
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++|+.++++++++|||.|++++|+|+.|...++.. |+++++++++.+++|.+|++++++.+.+ ++|+
T Consensus 96 ~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 168 (388)
T PRK07366 96 LPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLA-GGQIYPMPLRAENDFLPVFADIPTEVLA------QARL 168 (388)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEECCCccCCCCCHHHHHHhhcc------cceE
Confidence 99999999999999999999999999999999999988877 9999999998777889999998876643 6889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC-cccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK-FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~-~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
|+++|||||||.+++.+++++|+++|++++++||+||+|.++.|++.. ..++..... ..+++++++||||.||+|
T Consensus 169 i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~----~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP----EKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCC----CcccEEEEeecccccCCc
Confidence 999999999999999999999999999999999999999998886643 455555432 335789999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~ 350 (477)
|+|+||++++++ +.+.+.+.... +..+.+.|.+++.+..+ ++++++.++.++++++.+.+.|++.|+.+..+
T Consensus 245 GlRiG~~v~~~~-li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p 319 (388)
T PRK07366 245 GFRIGFAIGNAQ-LIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALHQIGWPVPLP 319 (388)
T ss_pred chhheehcCCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 999999998555 44444444332 22233445555555443 35678889999999999999999999887778
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
++|+|+|++++..... +..+++..++++.||.|.||+.|+...++|+||+|+. +++++++++++|++++
T Consensus 320 ~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 320 EATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAFL 388 (388)
T ss_pred CeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhC
Confidence 9999999999853211 1235777888888999999999976567899999985 7999999999999864
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=421.56 Aligned_cols=365 Identities=20% Similarity=0.346 Sum_probs=292.1
Q ss_pred Ccccccccccccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-c
Q 011801 37 PGGVIQLGLAENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-R 113 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~ 113 (477)
+.++++|+.+..... ...++...+.... .....|++..|.++||+++|+|+.+.+| +.++++ +
T Consensus 32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~l~~~~~--~~~~~~~~ 97 (403)
T PRK08636 32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQK------------PKTHGYSVSKGIYKLRLAICNWYKRKYN--VDLDPETE 97 (403)
T ss_pred CCCEEEcCCcCCCCCCCHHHHHHHHHHhcC------------CccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCe
Confidence 556789988754432 2234333332110 1346899999999999999999987766 557787 7
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh-CCCe
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA-SINI 192 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~-~~~~ 192 (477)
|++|+|+++|+.+++++|++|||.|++++|+|+.+...++.. |+++++++++.+++|++|++++.+.+++..++ ..++
T Consensus 98 I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 176 (403)
T PRK08636 98 VVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILA-GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKP 176 (403)
T ss_pred EEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCc
Confidence 999999999999999999999999999999999999888877 99999999865567899988776555543322 3578
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.|++..+.++..+.. ..+++++++||||.+|+
T Consensus 177 ~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 177 KYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG----AKDVAVESYTLSKSYNM 252 (403)
T ss_pred eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC----ccccEEEEEecccccCC
Confidence 99999999999999999999999999999999999999999998887655556555422 34678889999999999
Q ss_pred CCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~ 350 (477)
||+|+||++++++.+ ..+.+... ...++++.|.++..+++.. +.++++.++.++++++.+.+.|++.|+.+..+
T Consensus 253 ~GlRiG~iv~~~~li-~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 328 (403)
T PRK08636 253 AGWRVGFVVGNKKLV-GALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFANAGWELQKP 328 (403)
T ss_pred ccceeeeeeCCHHHH-HHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 999999999866544 44433332 2346678888887777543 45688888999999999999999989888889
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++|+|+|++++..... ..+.+++..++++.||.|.||..|+..+++|+||+|+ .+++++++++++|++++++++
T Consensus 329 ~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~~~~rl~~~l~~~~ 402 (403)
T PRK08636 329 RASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENENRIRQAARNIKKFLKELE 402 (403)
T ss_pred CcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999854321 1134677888888899999999998766789999998 589999999999999997643
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=422.78 Aligned_cols=350 Identities=22% Similarity=0.359 Sum_probs=290.9
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i 114 (477)
..++|+|+.+++.++ ++.+.+.+.+.... .....|+ ..|.++||++||+|+++.+| +.+++ ++|
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~y~-~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 96 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ-----------KESYGYT-LSGIQEFHEAVTEYYNNTHN--VILNADKEV 96 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----------cccCCCC-CCCcHHHHHHHHHHHHHHhC--CCCCCCCeE
Confidence 446899999988764 45566665542110 0122354 37999999999999998777 55788 899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++++.+++.+++++||.|++++|+|+.|...++.. |+++++++++.+++|.+|++++++++.+ ++|+
T Consensus 97 ~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 169 (399)
T PRK07681 97 LLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMA-GATSYYMPLKKENDFLPDLELIPEEIAD------KAKM 169 (399)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999999988877 9999999998777899999999888753 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++.++.. ..+++++++||||.||+||
T Consensus 170 v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~G 245 (399)
T PRK07681 170 MILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG----AKEVGVEINSLSKSYSLAG 245 (399)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC----CcccEEEEeecccccCCcc
Confidence 999999999999999999999999999999999999999998887665566555432 3468999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++ +.+.+.+.. ..+.++.+.|.++..+|.+++ .++++.++.++++++.+.+.|++.|+++..+.+
T Consensus 246 lRiG~~i~~~~-l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~ 321 (399)
T PRK07681 246 SRIGYMIGNEE-IVRALTQFKSNTDYGVFLPIQKAACAALRNGA---AFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAG 321 (399)
T ss_pred ceeEEEecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence 99999998654 444444332 234588899999999998753 467788889999999999999999998877889
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
|+|+|++++.... ..+++..+++++||.|.||+.|+..+++|+||+|+. +++++++++++|++
T Consensus 322 g~f~~~~l~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPKGWT------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 9999999985322 235788888878999999999986667899999984 78999999999998
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=420.17 Aligned_cols=386 Identities=18% Similarity=0.334 Sum_probs=302.5
Q ss_pred cchhhccCCCCCCc-cchhhhhhcCCCCCCCCCCcccccccccc-ccc-cHHHHHHHHHhCCCCcccccccccccccccc
Q 011801 5 SKIATNNGHGEDSA-YFDGWKAFDRNPFHPTQNPGGVIQLGLAE-NQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAI 81 (477)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (477)
.++-|+|..|++.. .-.|.++.-+. ..-|.++|+|+.+. ++. +++.+.+.+.+.-. ......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~-----------~~~~~~ 73 (405)
T PRK06207 9 ARLGTDNAPGQEVRQSAAGLEALLRG----EPLPGRPVDFSHGDVDAHEPTPGAFELFSAGVE-----------RGGVQA 73 (405)
T ss_pred HHhCCCCCCcHHHHhhhhhhhhhhcC----CcCCCCceecCCcCCCCCCCCHHHHHHHHHHHh-----------cCCCcc
Confidence 35567777777643 13445444333 23456789999865 433 33444444433100 012357
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|++..|.++||++||+++.+.+| +.+++ ++|++|+|+++++..++.+++++||.|++++|+|+.+...++.. |+++
T Consensus 74 Y~~~~G~~~LR~aia~~l~~~~g--~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~v 150 (405)
T PRK06207 74 YTEYRGDADIRELLAARLAAFTG--APVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEM 150 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEE
Confidence 99999999999999999988777 45678 89999999999999999999999999999999999999888877 9999
Q ss_pred EEEecc---CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 161 VPVHCD---ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 161 ~~v~~~---~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
++++++ .+++|.+|+++|++++++ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.
T Consensus 151 ~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~ 224 (405)
T PRK06207 151 VPVQLDYLSADKRAGLDLDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLL 224 (405)
T ss_pred EEEeccccCcccCCCcCHHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 999986 335789999999998865 68899999999999999999999999999999999999999999988
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCCh
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~ 315 (477)
|++..+.++..+.. ..+++++++||||.+|+||+|+||++++++ +.+.+.+.... ...+.++|.++..+|+++
T Consensus 225 ~~~~~~~~~~~~~~----~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~ 299 (405)
T PRK06207 225 YDGTSYTHLRALPI----DPENVITIMGPSKTESLSGYRLGVAFGSPA-IIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP 299 (405)
T ss_pred cCCCCCCchhcCCC----CcCcEEEEecchhhccCcccceEEEEcCHH-HHHHHHHHHhHhccCCCHHHHHHHHHHHhCc
Confidence 87655555544321 458999999999999999999999998654 44444443322 235678999999999764
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ 394 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~ 394 (477)
. .++++..++++++++.+.+.|++. ++.+.++++|+|+|++++.... +..++++.+++++||.|.||+.|+
T Consensus 300 ~---~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~-----~~~~~~~~l~~~~gV~v~pG~~F~ 371 (405)
T PRK06207 300 D---GWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAV-----SLHDFVKILRLQAGVIVTPGTEFS 371 (405)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCC-----CHHHHHHHHHHhcCEEEeCchHhC
Confidence 1 234555566777888899999887 7888889999999999985210 123577888777899999999998
Q ss_pred CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 395 CTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 395 ~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
...++||||||+. ++++++++++||++++++++
T Consensus 372 ~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 372 PHTADSIRLNFSQ-DHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred CCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence 7667899999996 88999999999999997643
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-51 Score=420.20 Aligned_cols=387 Identities=21% Similarity=0.302 Sum_probs=300.0
Q ss_pred CCCCCCccchhhhhhcCCCCCCCCCCccccccccccc---cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCC
Q 011801 12 GHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAEN---QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHG 87 (477)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n---~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G 87 (477)
+.||-...+..|....... .....+++++++++. .+ +++.+.+.+.+.... .....|++..|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G 74 (433)
T PRK06855 9 GAGELTYEIRNIVAVAKKL---EKLGVKITWENIGDPIAKGEKIPDWMKEIVAELVMD-----------DKSYGYCPTKG 74 (433)
T ss_pred CcHHHHHHHHHHHHHHHHH---HhccccccccccCCCcccCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCC
Confidence 4455555554443333221 122346788888765 23 345555555442110 13457999999
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
.++||+++|+|+.+.+| +.+++++|++|+|+++|+.+++. +++|||.|++++|+|+.|........|+++++++++.
T Consensus 75 ~~~LReaia~~~~~~~g--~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~ 151 (433)
T PRK06855 75 VLETREFLAELNNKRGG--AQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDP 151 (433)
T ss_pred CHHHHHHHHHHHHhccC--CCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEeccc
Confidence 99999999999998776 56789999999999999999985 7899999999999999887543333388999999887
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+++|.+|+++|++++++ +.++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++.
T Consensus 152 ~~~~~~d~~~l~~~~~~----~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~ 227 (433)
T PRK06855 152 ENNWYPDLDDLENKVKY----NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLS 227 (433)
T ss_pred ccCCCCCHHHHHHHHhc----CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHH
Confidence 67899999999998863 23678999999999999999999999999999999999999999999888776667777
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC----HHHHHHHHHh----cccCCCchHHHHHHHHhcCChhhHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN----DTVVNCGRKM----SSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~----~~i~~~~~~~----~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
++.. ..++++++||||.+++||+|+||+++++ +.+....+.+ .....+++++|.++..+|.++++ +
T Consensus 228 ~~~~-----~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~ 301 (433)
T PRK06855 228 EVIG-----DVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-K 301 (433)
T ss_pred HHcC-----cCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-H
Confidence 6642 1367899999999999999999999842 2222222221 12234678999999999998776 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhc------------cC---------chHHHHHHH
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKE------------KT---------LEGEIALWR 377 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~------------~~---------~~~e~~l~~ 377 (477)
+++++.++.+++|++.+.+.|++. |+.+.++++|+|+|++++..... .. .....+++.
T Consensus 302 ~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (433)
T PRK06855 302 NYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVY 381 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHH
Confidence 889999999999999999999887 78888899999999999864200 00 001336777
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 378 TIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++++.||.+.||+.|+.. ..++||||+..+++++++++++|++++++
T Consensus 382 ~l~~~~gV~v~PG~~F~~~-~~~~Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 382 YLLASTGICVVPLSSFCTE-LNGFRVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred HHHHHcCEEEecCCcCCCC-CCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 8888899999999999743 34599999987999999999999999875
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=424.31 Aligned_cols=345 Identities=23% Similarity=0.397 Sum_probs=279.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhhhCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
...|++..|.++||++||+|+++.+| +.+++++|++|+|+++++.+++++++ +|||.|++++|+|+.|...++.. |
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~-g 184 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLL-G 184 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHc-C
Confidence 45699999999999999999998776 56789999999999999999999998 79999999999999999998887 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.++++++++++++|.+|+++|++++.+..+++.++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.+++
T Consensus 185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 99999999877889999999999997655555689999999999999999999999999999999999999999999988
Q ss_pred cCC-CCcccHHHhhhhccCC---CCcEEEEecCCcc-cCCCCceEEEEEe--CCHHHHHHHHHhc-ccCCCchHHHHHHH
Q 011801 238 FSS-PKFTSVAEVIQEMDCN---RDLIHIIYSLSKD-MGLPGFRVGIVYS--FNDTVVNCGRKMS-SFGLVSSQTQYLLA 309 (477)
Q Consensus 238 ~~~-~~~~s~~~~~~~~~~~---~~~viiv~SlSK~-~g~~G~RvG~i~~--~~~~i~~~~~~~~-~~~~vs~~~q~~~~ 309 (477)
|++ ..+.++.....+.+.. ..++++++||||. +|+||+|+||+++ .++.+.+.+.+.. ....++.++|.++.
T Consensus 265 ~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~ 344 (481)
T PTZ00377 265 YDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTG 344 (481)
T ss_pred cCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHH
Confidence 853 4566765543321101 1368999999997 6999999999987 2455555554443 33457889999999
Q ss_pred HhcCCh-----hh--HHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeecc--chhhc----cCchHHHHH
Q 011801 310 SMLSDD-----EF--VDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLR--HLLKE----KTLEGEIAL 375 (477)
Q Consensus 310 ~~L~~~-----~~--~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~--~~~~~----~~~~~e~~l 375 (477)
.+|.+. .+ ..+++++.++.+++|++.+.+.|+++ |+.+..+++|+|+|++++ ..... ..+..+.++
T Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (481)
T PTZ00377 345 LMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLY 424 (481)
T ss_pred HHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHH
Confidence 999642 11 12334444556899999999999988 899999999999998764 21110 001123356
Q ss_pred HHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+..++++.||.|.||+.|+.. ++++||+||+ .+++++++++++|++++++.
T Consensus 425 ~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~~ 476 (481)
T PTZ00377 425 CLELLESTGIVVVPGSGFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHESF 476 (481)
T ss_pred HHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999853 4569999999 68899999999999998763
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=421.64 Aligned_cols=362 Identities=19% Similarity=0.338 Sum_probs=289.7
Q ss_pred Cccccccccccccc-----cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 37 PGGVIQLGLAENQL-----CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 37 ~~~~i~l~~~~n~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
..++|+|+.++... +++.+.+.+.+.-. . .....|++..|.++||++||+|+++.++ +.++|
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~------~-----~~~~~Y~~~~G~~~lR~aiA~~~~~~~~--~~~~~ 131 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLR------S-----GKGNSYGPGAGILPARRAVADYMNRDLP--HKLTP 131 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHh------C-----CCCCCCCCCCChHHHHHHHHHHHHHhcC--CCCCc
Confidence 34789999986542 22334444443211 0 1235798889999999999999987766 45789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|++|+|+++|+.+++.++++|||.|++++|+|+.|...++.. |++++.+++.++++|.+|+++|++++++ +
T Consensus 132 ~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~l~~~~~~~~d~~~l~~~~~~------~ 204 (462)
T PLN02187 132 EDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYS-GLEVRKFDLLPEKEWEIDLEGIEAIADE------N 204 (462)
T ss_pred ccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEeCccccCCccCHHHHHHhcCC------C
Confidence 99999999999999999999999999999999999998888776 9999999987667899999999987753 6
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.+++|++..+.++..+. ...++++++||||.|+
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~-----~~~~vi~l~SfSK~f~ 279 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFA-----SIVPVLTLAGISKGWV 279 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhc-----cCCcEEEEecchhhcC
Confidence 78999999999999999999999999999999999999999999988776666766553 2246999999999999
Q ss_pred CCCceEEEEEeCCH-HHH---HHHHHhcccC----CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 272 LPGFRVGIVYSFND-TVV---NCGRKMSSFG----LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 272 ~~G~RvG~i~~~~~-~i~---~~~~~~~~~~----~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+||+|+||++++++ .+. +.+....... .++.+.|.++..+|++.+ +.++++.++.++++++.+.+.|++.
T Consensus 280 ~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~~~L~~~ 357 (462)
T PLN02187 280 VPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVCDRLKDI 357 (462)
T ss_pred CccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999998543 222 2333332222 247899999999997532 4678888999999999999999987
Q ss_pred CC-e-EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 344 GI-N-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 344 gi-~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
+. . +..|++|+|+|++++.... ..+.++.+++..++.+.||.|.||+.|+ .++||||+|+. +++.++++++||+
T Consensus 358 ~~~~~~~~P~gg~fl~~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~~-~~e~l~~al~rL~ 433 (462)
T PLN02187 358 PCVVCPKKPESCTYLLTKLELSLM-DNIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIGV-EAHMLEDALERLK 433 (462)
T ss_pred CCCcCCCCCCEeEEEEeecChhhC-CCCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeCC-CHHHHHHHHHHHH
Confidence 53 3 2367889999998863211 1111234677888888999999999996 37899999985 7899999999999
Q ss_pred HHHhhhhc
Q 011801 422 AFVQQDKE 429 (477)
Q Consensus 422 ~~~~~~~~ 429 (477)
++++++..
T Consensus 434 ~~l~~~~~ 441 (462)
T PLN02187 434 GFCTRHAK 441 (462)
T ss_pred HHHHHhhh
Confidence 99987654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-51 Score=415.99 Aligned_cols=351 Identities=22% Similarity=0.327 Sum_probs=285.4
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCC-cE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPD-RI 114 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~-~i 114 (477)
.++|+|+.++++++ ++.+.+.+.+. +.....|++..|.++||++||+|+.+.+| +. ++++ +|
T Consensus 29 ~~~i~l~~~~p~~~~~~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~~i 93 (396)
T PRK09147 29 LPPISLSIGEPKHPTPAFIKDALAAN-------------LDGLASYPTTAGLPALREAIAAWLERRYG--LPALDPATQV 93 (396)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHH-------------hhhhcCCCCCCCCHHHHHHHHHHHHHHhC--CCcCCccceE
Confidence 46799999998875 45566666553 12456799999999999999999988777 55 6775 89
Q ss_pred EEeCChHHHHHHHHHHhcCC---CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 115 VMGGGATGANELIMFCLANP---GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~---Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|+|+++++.++++++++| ||.|++++|+|+.|...++.. |++++++|++.+++|.+|++++++++.+ +
T Consensus 94 ~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~vp~~~~~~~~~d~~~l~~~~~~------~ 166 (396)
T PRK09147 94 LPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-GAEPYFLNCDPANNFAPDFDAVPAEVWA------R 166 (396)
T ss_pred EECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-CCEEEEeccCccccCccCHHHHHHHHhh------c
Confidence 99999999999999999999 999999999999999888876 9999999998777899999999887754 7
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC-CcccHHHhhhhcc-CCCCcEEEEecCCcc
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTSVAEVIQEMD-CNRDLIHIIYSLSKD 269 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~-~~~s~~~~~~~~~-~~~~~viiv~SlSK~ 269 (477)
+|++++||||||||.+++.+++++|+++|++++++||+||+|.++.|++. ...+........+ ...+++++++||||.
T Consensus 167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 89999999999999999999999999999999999999999999877653 2222221111010 024789999999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC 347 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~ 347 (477)
+|+||+|+||++++++.+ +.+.+... .+.++++.|.++...+.+. .++++.++.++++++.+.+.|.+. +.+
T Consensus 247 ~~~~GlRiG~~~~~~~l~-~~~~~~~~~~~~~~~~~~q~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 320 (396)
T PRK09147 247 SNVPGLRSGFVAGDAALL-KKFLLYRTYHGCAMPPAVQAASIAAWNDE----AHVRENRALYREKFDAVTPILAPV-LDV 320 (396)
T ss_pred cCCccceeeeecCCHHHH-HHHHHHhhhcccCCCHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 999999999999966544 43433332 2357888999987777654 357888899999999999999875 666
Q ss_pred ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 348 LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 348 ~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
..+++|+|+|++++ .. +.+++..+++++||.+.||+.|+. .+.+++||+|+. +++++++++++|+
T Consensus 321 ~~p~~g~f~~~~~~--~~------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l~rl~ 391 (396)
T PRK09147 321 QLPDAGFYLWAKVP--GD------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAAERIV 391 (396)
T ss_pred CCCCeeEEEEEECC--CC------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 77889999999998 11 235788888888999999999863 235799999996 7889999999999
Q ss_pred HHHh
Q 011801 422 AFVQ 425 (477)
Q Consensus 422 ~~~~ 425 (477)
++++
T Consensus 392 ~~~~ 395 (396)
T PRK09147 392 DFCR 395 (396)
T ss_pred HHhc
Confidence 9874
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=415.59 Aligned_cols=353 Identities=22% Similarity=0.411 Sum_probs=292.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+....+ ++.+.+.+.+.-+ +....|++..|.++||+++++++++.+| +.++++ +|+
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~~I~ 119 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIR------------DGKNQYARGFGVPELNSAIAERFKKDTG--LVVDPEKEVT 119 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 37899999886664 4555665544211 1235799999999999999999998766 557887 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++++|||.|++++|+|+.+...++.. |+++++++++.+ +|.+|+++|++++.+ ++|+|
T Consensus 120 vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~-~~~~~~~~l~~~~~~------~~k~i 191 (413)
T PLN00175 120 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKTVTLRPP-DFAVPEDELKAAFTS------KTRAI 191 (413)
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEECCcc-cCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 999999998754 489999999988754 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. +.++.++.. ..+++++++||||.||+||+
T Consensus 192 ~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~----~~~~vi~i~SfSK~~~~~G~ 266 (413)
T PLN00175 192 LINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPG----MYERTVTMNSLGKTFSLTGW 266 (413)
T ss_pred EecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCC----CcCcEEEEecchhhccCcch
Confidence 9999999999999999999999999999999999999999888653 456555432 35789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++.+.. +.+.. ....++.+.|.++..+|.++ +.++++.++.++++++.+.+.|++.|+.+..+++|
T Consensus 267 RiG~~v~~~~l~~~-l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~ 342 (413)
T PLN00175 267 KIGWAIAPPHLTWG-VRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGT 342 (413)
T ss_pred heeeeEeCHHHHHH-HHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 99999996654443 33332 23457889999999999875 34688889999999999999999999999999999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|++++.. ....+.+++..+++++||.+.||+.|+.. +++++||+|+. +++++++++++|++++++
T Consensus 343 ~f~~~~~~~~----~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 343 YFVMVDHTPF----GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERMKTKLKR 413 (413)
T ss_pred EEEEEecccc----CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHhC
Confidence 9999998531 11123468888888889999999999642 35799999996 899999999999998763
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=413.22 Aligned_cols=361 Identities=22% Similarity=0.362 Sum_probs=289.7
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i 114 (477)
..++|+|+.+++.++ ++.+.+.+.+.... .....|++..|.++||+++|+|+++.+| +.++++ +|
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQD-----------PRTHRYSASKGIPGLRRAQAAYYARRFG--VKLNPDTQV 95 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcC-----------cccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 456899999987664 33333334332100 1246799999999999999999987666 446787 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++++.+++.+++++||+|++++|+|+.|...+... |+++++++++.+++|. ++++++++.. ..++++
T Consensus 96 ~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~---~~l~~~~~~~---~~~~~~ 168 (405)
T PRK09148 96 VATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMA-GGVIRSVPAEPDEEFF---PALERAVRHS---IPKPIA 168 (405)
T ss_pred EEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhc-CCEEEEEeCCCCCCCc---cCHHHHHhhc---cccceE
Confidence 99999999999999999999999999999999998888876 9999999987655554 3444544321 237889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|+++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+.. ..+++++++||||.+|+||
T Consensus 169 v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~----~~~~~i~~~SfSK~~~~pG 244 (405)
T PRK09148 169 LIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG----AKDVTVEFTSMSKTFSMAG 244 (405)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC----ccCcEEEEeccccccCCcc
Confidence 999999999999999999999999999999999999999998787655556554321 3467888999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++ +.+.+.+... ...+++++|.++..+|++. +.++++.++.++++++.+.+.|++.|+.+..+++
T Consensus 245 lR~G~~v~~~~-~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~ 320 (405)
T PRK09148 245 WRMGFAVGNER-LIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAA 320 (405)
T ss_pred hheeeeeCCHH-HHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCe
Confidence 99999999555 4455544433 2347789999999999864 4567888899999999999999999988778899
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
|+|+|++++..... ..+.+++..++++.||.|.||+.|+..+++|+||+++ .+++++.+++++|.+++.++.+
T Consensus 321 g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~~l~~al~~l~~~l~~~~~ 393 (405)
T PRK09148 321 SMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQRIRQAARNIKRFLSSADE 393 (405)
T ss_pred eEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999853321 1234688888888899999999997666789999998 5899999999999999987665
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=425.92 Aligned_cols=359 Identities=21% Similarity=0.351 Sum_probs=286.2
Q ss_pred ccccccccc-ccccc---HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 38 GGVIQLGLA-ENQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 38 ~~~i~l~~~-~n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
.++|+|+.+ ++++. ++.+.+.+.+. ......|++..|.++||++||+|+.+..+ ..+++++
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lReaia~~~~~~~~--~~~~~~~ 210 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQ-------------LTDTEGYSDSKGLFSARKAIMQYAQLKGL--PNVDVDD 210 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHH-------------hhcCCCCCCCcChHHHHHHHHHHHHhcCC--CCCChhH
Confidence 468999985 34332 33333333332 11234799999999999999999976543 3478999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++++.+++.+|+++||.|++++|+|+.|...++.. |++++.++++++++|.+|++++++++.. ++|
T Consensus 211 I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~k 283 (517)
T PRK13355 211 IYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLA-GGTAVHYRCDEQSEWYPDIDDIRSKITS------RTK 283 (517)
T ss_pred EEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHC-CCEEEEeecCcccCCCCCHHHHHHhcCc------Cce
Confidence 999999999999999999999999999999999999888877 9999999998777899999999988754 789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|+++|||||||.+++.+++++|+++|++|+++||+||+|.+++|++..+.++..+.. ...+++++||||.+++|
T Consensus 284 ~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-----~~~vi~~~S~SK~~~~~ 358 (517)
T PRK13355 284 AIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAP-----DLFCVTFSGLSKSHMIA 358 (517)
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCC-----CCeEEEEecchhhccCc
Confidence 9999999999999999999999999999999999999999998888766677766532 23477789999999999
Q ss_pred CceEEEEEeC-CHH----HHHHHHHhcc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe
Q 011801 274 GFRVGIVYSF-NDT----VVNCGRKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN 346 (477)
Q Consensus 274 G~RvG~i~~~-~~~----i~~~~~~~~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~ 346 (477)
|+|+||++++ +.. +...+..... ...++.++|.++..+|.+.+..+.++.+.+ ++.++++.+.+.|.++ |++
T Consensus 359 G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~g~~ 437 (517)
T PRK13355 359 GYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGG-RVYEQRELVYNALNAIPGIS 437 (517)
T ss_pred ccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHH-HHHHHHHHHHHHHhcCCCcc
Confidence 9999999964 222 2222222222 234778999999999976433355666543 4455679999999988 899
Q ss_pred EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 347 CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 347 ~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+.++++|||+|++++.... .+..+.+++..++.+.||.|.||+.|+...++||||+|+ .+++++++++++|++++++
T Consensus 438 ~~~p~g~fy~~~~l~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~-~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 438 AVKPKAAFYIFPKIDVKKF--NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL-PRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred cCCCCeeeEEEeecCcccC--CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999874210 011233577778888899999999998767899999997 5899999999999999976
Q ss_pred h
Q 011801 427 D 427 (477)
Q Consensus 427 ~ 427 (477)
+
T Consensus 515 ~ 515 (517)
T PRK13355 515 Y 515 (517)
T ss_pred h
Confidence 4
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=413.40 Aligned_cols=376 Identities=21% Similarity=0.359 Sum_probs=300.4
Q ss_pred hhhhcCCCCCCCCCCcccccccccccc----c-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHH
Q 011801 23 WKAFDRNPFHPTQNPGGVIQLGLAENQ----L-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAK 97 (477)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~l~~~~n~----~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~ 97 (477)
|-.-..+.+....++.++|+|+++++. . +++.+.+.+.+.-. -.....|++..|.++||+++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~~ia~ 84 (409)
T PLN02656 16 ILSLLMESIDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQ-----------SNKFNGYAPTVGLPQARRAIAE 84 (409)
T ss_pred HHHHHHHhccccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCCCCHHHHHHHHH
Confidence 333333344455678899999999885 2 34555665544211 0134579999999999999999
Q ss_pred HHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHH
Q 011801 98 FMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREA 177 (477)
Q Consensus 98 ~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~ 177 (477)
|+++.+| +.+++++|++|+|+++|+.+++.+++++||.|++++|+|+.+...+... |++++.++++.+++|.+|+++
T Consensus 85 ~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~ 161 (409)
T PLN02656 85 YLSRDLP--YKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFR-HLEVRYVDLLPEKGWEVDLDA 161 (409)
T ss_pred HHHHhcC--CCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHc-CCEEEEEeCCCcCCCCCCHHH
Confidence 9998766 4578999999999999999999999999999999999999998777776 999999998766689999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR 257 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~ 257 (477)
+++++++ ++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+ . ..
T Consensus 162 l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~----~~ 230 (409)
T PLN02656 162 VEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF-G----SI 230 (409)
T ss_pred HHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh-c----cc
Confidence 9988754 67899999999999999999999999999999999999999999988877655665544 2 34
Q ss_pred CcEEEEecCCcccCCCCceEEEEEeCC-------HHHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 011801 258 DLIHIIYSLSKDMGLPGFRVGIVYSFN-------DTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRL 329 (477)
Q Consensus 258 ~~viiv~SlSK~~g~~G~RvG~i~~~~-------~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l 329 (477)
+++++++||||.|++||+|+||+++++ ..+.+.+.+.. ....++.++|.++..+|++.. +.++++.++++
T Consensus 231 ~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~ 308 (409)
T PLN02656 231 VPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINIL 308 (409)
T ss_pred CcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHH
Confidence 679999999999999999999999953 34555444432 234578899999999997532 45688889999
Q ss_pred HHHHHHHHHHHhhCC-Ce-EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc
Q 011801 330 AKRHHNFTKGLEQVG-IN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN 407 (477)
Q Consensus 330 ~~r~~~l~~~L~~~g-i~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~ 407 (477)
+++++.+.+.|++.+ +. +..+++|+|+|++++..... ....+.+++..++.+.||.+.||+.|+. ++||||||+.
T Consensus 309 ~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~ 385 (409)
T PLN02656 309 KQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA 385 (409)
T ss_pred HHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC
Confidence 999999999998873 33 34788999999999742111 1111234666777788999999999963 6899999995
Q ss_pred CCHHHHHHHHHHHHHHHhhhhc
Q 011801 408 MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 408 ~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+++++++++++|++++.++..
T Consensus 386 -~~e~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 386 -DPSSLEEALGRIKSFYLRHSK 406 (409)
T ss_pred -CHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999986543
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=413.78 Aligned_cols=354 Identities=24% Similarity=0.445 Sum_probs=291.8
Q ss_pred ccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+++.+++ +.+.+.+.+... .....|++..|.++||+++|+|+++.+| +.++++ +|+
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 85 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLE------------QGYTSYTANAGLLELRQEIAKYLKKRFA--VSYDPNDEII 85 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 578999999988753 334444433210 1245698888999999999999998776 456775 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++++|||.|++++|+|+.|...++.. |.++++++++.+++|.+|++++++++.+ ++++|
T Consensus 86 ~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 158 (378)
T PRK07682 86 VTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLA-GGVPVPVATTLENEFKVQPAQIEAAITA------KTKAI 158 (378)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCCCCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999998888876 9999999987666789999999998754 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|+++++++|+||+|.++.|+++ +.++..+.. ..+++++++||||.||+||+
T Consensus 159 ~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~----~~~~~i~~~S~SK~~~~~Gl 233 (378)
T PRK07682 159 LLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKG----MRERTILISGFSKGFAMTGW 233 (378)
T ss_pred EEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhccc----ccCCEEEEecCcccccChhh
Confidence 9999999999999999999999999999999999999999888653 345444432 34689999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+.+.. ..+.++.++|.++..+|++++ .++++.++.++++++.+.+.|++.|+.+..+++|
T Consensus 234 R~G~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~g~ 309 (378)
T PRK07682 234 RLGFIAAPVY-FSEAMLKIHQYSMMCAPTMAQFAALEALRAGN---DDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPGGA 309 (378)
T ss_pred hhhhhhcCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHCCCccCCCCee
Confidence 9999999665 444443332 234478899999999998753 2477788899999999999999999988889999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++... . ...++++.+++++||.+.||..|+..+++|+|||++. +++++++++++|++++++.
T Consensus 310 ~~~~~~~~~~~----~-~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 310 FYAFPSISSTG----L-SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred EEEEEeccCCC----C-CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 99999886311 1 1235778888778999999999976667899999996 7899999999999998763
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=412.94 Aligned_cols=362 Identities=20% Similarity=0.357 Sum_probs=287.5
Q ss_pred Ccccccccccccc----c-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 37 PGGVIQLGLAENQ----L-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 37 ~~~~i~l~~~~n~----~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
..++|+|+.++.. + +++.+.+.+.+.-+. .....|++..|.++||++||+|+.+.+| +.+++
T Consensus 31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~ 97 (409)
T PLN00143 31 HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS-----------AKFNSYAPTGGILPARRAIADYLSNDLP--YQLSP 97 (409)
T ss_pred CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCH
Confidence 4568999998875 3 445565655442110 1235698889999999999999988766 55789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|++|+|+++++.+++.+++++||.|++++|+|+.|...++.. |++++.++++.+++|.+|+++|++++++ +
T Consensus 98 ~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 170 (409)
T PLN00143 98 DDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFH-HLEIRHFDLLPEKGWEVDLDAVEAIADE------N 170 (409)
T ss_pred hhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHc-CCEEEEEeccCCCCCcCCHHHHHHhccc------C
Confidence 99999999999999999999999999999999999999888877 9999999986567899999999887753 6
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
++.++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+. ..+++++++||||.|+
T Consensus 171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~-----~~~~vi~~~SfSK~f~ 245 (409)
T PLN00143 171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFA-----SIVPVITLGSISKRWM 245 (409)
T ss_pred CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhc-----ccCcEEEEccchhhcC
Confidence 88999999999999999999999999999999999999999999888765555554432 3468999999999999
Q ss_pred CCCceEEEEEeC-CHHH------HHHHHHhcc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 272 LPGFRVGIVYSF-NDTV------VNCGRKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 272 ~~G~RvG~i~~~-~~~i------~~~~~~~~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+||+|+||++++ ++.+ ...+.+... ...++.++|.++..+|.+.. +.++++.+++++++++.+.+.|.++
T Consensus 246 ~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~ 323 (409)
T PLN00143 246 IPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCYDKLKEI 323 (409)
T ss_pred CCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999984 3322 222222221 22357799999999997632 3456777788888888899999887
Q ss_pred CC-eE-ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 344 GI-NC-LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 344 gi-~~-~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
+. .+ ..+++|+|+|++++..... ....+.+++..++.+.||.+.||+.|+. ++|+||+|+. ++++++++++||+
T Consensus 324 ~~~~~~~~p~gg~f~w~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRi~~~~-~~~~l~~al~rl~ 399 (409)
T PLN00143 324 PCIMCPQKAEGAFFALVKLNLLLLE-DIEDDMEFCLKLAKEESLIILPGVTVGL--KNWLRITFAV-EQSSLEDGLGRLK 399 (409)
T ss_pred CCCCCCCCCCeeEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEEcC-CHHHHHHHHHHHH
Confidence 43 32 3578999999999852111 1112346777788888999999999963 7899999994 7899999999999
Q ss_pred HHHhhhhc
Q 011801 422 AFVQQDKE 429 (477)
Q Consensus 422 ~~~~~~~~ 429 (477)
++++++..
T Consensus 400 ~~l~~~~~ 407 (409)
T PLN00143 400 SFCGRHAK 407 (409)
T ss_pred HHHHHhcc
Confidence 99986543
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=413.23 Aligned_cols=352 Identities=22% Similarity=0.353 Sum_probs=285.2
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i 114 (477)
..++|+|+.+....+ ++.+.+.+.+.-.. .....|++..|.++||+++|+|+++.+| +.++++ +|
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~~g--~~~~~~~~i 97 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAEN-----------PANHKYSPFRGYPFLKEAAADFYKREYG--VTLDPETEV 97 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccE
Confidence 346799998865553 34555555542110 1245798889999999999999987766 457788 89
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++++..++.+++++||.|++++|+|+.|...++.. |+++++++++.+++|.+|++++++++.+ ++++
T Consensus 98 ~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~~ 170 (389)
T PRK08068 98 AILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALA-RAQFETMPLIAENNFLPDYTKIPEEVAE------KAKL 170 (389)
T ss_pred EEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEeecccccCCCCCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999999888877 9999999998667899999999988753 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|+++|||||||.+++.+++++|+++|++++++||+||+|.++.|++....+...... ..+++++++||||.||+||
T Consensus 171 v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~----~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 171 MYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPG----AKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCC----ccCCEEEEecchhccCCcc
Confidence 999999999999999999999999999999999999999988776544445443322 3467899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccC--CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFG--LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~--~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++ +.+.+.+..... ..++..|.++..++.+. .+++++.+++++++++.+.+.|++.|+.+.++.+
T Consensus 247 lRiG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g 322 (389)
T PRK08068 247 WRVAFAVGNES-VIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREIGWEVDAPKG 322 (389)
T ss_pred ceeEeEecCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence 99999998554 444444433322 23456788877777653 2457888899999999999999999998888999
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
|+|+|++++...+ ..++++.+++++||.|.||+.|+..+++|+||+++. +++.+.+++++|+++
T Consensus 323 ~~~~~v~~~~~~~------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 386 (389)
T PRK08068 323 SFFAWMPVPKGYT------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGKL 386 (389)
T ss_pred eEEEEEECCCCCC------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 9999999985322 235788888778999999999987667899999985 788999999998764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=410.99 Aligned_cols=352 Identities=21% Similarity=0.338 Sum_probs=284.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+++++. ++.+.+.+++.. .....|++..|.++||+++|+|+.+.+|....++++ +|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~ 94 (393)
T TIGR03538 28 KPPIALSIGEPKHPTPAFVLEALRENL-------------HGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVL 94 (393)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHh-------------hccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEE
Confidence 46799999998875 456666666531 235679999999999999999998877643336785 899
Q ss_pred EeCChHHHHHHHHHHhcCCCCe--EEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 116 MGGGATGANELIMFCLANPGDA--FLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~--vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+|+|+++++.++++++++|||. |++++|+|+.|...++.. |+++++++++++++|.+|.+++++++.+ ++|
T Consensus 95 it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k 167 (393)
T TIGR03538 95 PVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLA-GAEPYFLNCTAENGFLPDFDAVPESVWR------RCQ 167 (393)
T ss_pred ECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhc-CCeEEEeeccccCCCCCCHHHHHHHHhh------cce
Confidence 9999999999999999999986 999999999999888776 9999999998777899999999988754 789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC-CcccHHHhhhhcc-CCCCcEEEEecCCcccC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTSVAEVIQEMD-CNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~-~~~s~~~~~~~~~-~~~~~viiv~SlSK~~g 271 (477)
+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++. .+.+........+ ...+++++++||||.++
T Consensus 168 ~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 247 (393)
T TIGR03538 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSN 247 (393)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcC
Confidence 999999999999999999999999999999999999999998777632 2333322211111 02478999999999999
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
+||+|+||++++++.+ +.+.+... ...++++.|.++...+.+. +++++.++.++++++.+.+.|.+. +.+..
T Consensus 248 ~~GlRvG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~ 321 (393)
T TIGR03538 248 LPGLRSGFVAGDAEIL-KAFLRYRTYHGCAMPIPTQLASIAAWNDE----QHVRENRALYREKFAAVLEILGQV-LDLEL 321 (393)
T ss_pred CcccceEEEecCHHHH-HHHHHHHHhhccCcCHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHhh-CcccC
Confidence 9999999999966544 33333332 2347888999988888653 457788889999999999999875 55667
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+++|+|+|++++ . ++.++++.+++++||.|.||+.|+. .+++++||+|+. +++++++++++|+++
T Consensus 322 p~gg~f~~~~~~--~------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 322 PDAGFYLWPKVP--G------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERIRSF 392 (393)
T ss_pred CCeeEEEEEECC--C------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHHHHh
Confidence 899999999998 1 1235788888888999999999862 235799999986 789999999999886
Q ss_pred H
Q 011801 424 V 424 (477)
Q Consensus 424 ~ 424 (477)
+
T Consensus 393 ~ 393 (393)
T TIGR03538 393 I 393 (393)
T ss_pred C
Confidence 3
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=411.21 Aligned_cols=350 Identities=25% Similarity=0.381 Sum_probs=288.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++++|+.+++.+. ++.+.+.+.+.... .....|+++.|.++||+++|+|+++.+| +.++++ +|+
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~~vi 95 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAEN-----------PENHRYPSYEGMLAYRQAVADWYKRRFG--VELDPETEVL 95 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCeEE
Confidence 36799999988774 45555555442110 1245799999999999999999987766 446676 699
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++..++++++++||.|++++|+|+.+...++.. |+++++++++.+++|.+|++++++++.+ ++++|
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 168 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFA-GGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLM 168 (383)
T ss_pred ECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhc-CCEEEEEecCcccCCccCHHHHHhhccc------cceEE
Confidence 9999999999999999999999999999999999888876 9999999998667789999999888753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++....++..+.. ..+++++++||||.||+||+
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~----~~~~~i~~~SfSK~~g~~Gl 244 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDG----AKDVGIEFHSLSKTYNMTGW 244 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCC----cccCEEEEEecccccCCccc
Confidence 99999999999999999999999999999999999999988886655555554421 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++.+ +.+..... ...++.+.|.++..+|.+. ++++++.++.++++++.+.+.|++.|+.+.++++|
T Consensus 245 RiG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 320 (383)
T TIGR03540 245 RIGMAVGNADLI-AGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKAT 320 (383)
T ss_pred eeeEEeCCHHHH-HHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcc
Confidence 999999865544 43333222 2346778999999999874 45678888999999999999999999999889999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+|+|++++...+ ..+++..+++++||.|.||+.|+..+++++||+|+ .+++++++++++|++
T Consensus 321 ~~~~~~l~~~~~------~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 321 FYVWVPVPEGYT------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT-VPDERLEEAVARIKK 382 (383)
T ss_pred eEEEEECCCCCC------HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec-CCHHHHHHHHHHHhh
Confidence 999999985322 23578888888899999999997655789999998 478999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=412.71 Aligned_cols=362 Identities=20% Similarity=0.373 Sum_probs=293.0
Q ss_pred Cccccccccccccc-----cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 37 PGGVIQLGLAENQL-----CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 37 ~~~~i~l~~~~n~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
...+|+|+.++... .++.+.+.+.+.-. ......|++..|++++|+++|+++++.++ +.+++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 117 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALR-----------SGKYNSYSTCVGLLPARRAIAEYLSRDLP--YELST 117 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHH-----------cCcCCCCCCCccCHHHHHHHHHHHhhccC--CCCCh
Confidence 34699999997642 23445555443210 01234799989999999999999987766 55789
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|++|+|+++|+.+++.+|.+|||.|++++|+|+.|...+... |++++.+++.++++|.+|++++++++.+ +
T Consensus 118 ~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 190 (430)
T PLN00145 118 DDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFS-GLEVRHFDLLPERGWEVDLEGVEALADE------N 190 (430)
T ss_pred hhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeeCCcccCCcCCHHHHHHHhCc------C
Confidence 99999999999999999999999999999999999998877776 9999999987677899999999987754 7
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+. ..+++++++||||.|+
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~-----~~~~vi~~~S~SK~~~ 265 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG-----EVAPVLTLGSISKRWV 265 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc-----ccCcEEEEeccccccC
Confidence 88999999999999999999999999999999999999999999888776666765542 3468999999999999
Q ss_pred CCCceEEEEEeC-CHHHH------HHHHHhcccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 272 LPGFRVGIVYSF-NDTVV------NCGRKMSSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 272 ~~G~RvG~i~~~-~~~i~------~~~~~~~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+||+|+||++++ ++.+. ..++.....+ ..+++.|.++..+|.+.. +.++++.++.++++++.+.+.|++.
T Consensus 266 ~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~ 343 (430)
T PLN00145 266 VPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKIKEI 343 (430)
T ss_pred CCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999974 22222 2233333222 356799999999998642 5678888999999999999999987
Q ss_pred -CCeEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 344 -GINCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 344 -gi~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
|+.+. .|++|+|+|++++...-. .+.++.+++..++++.||.+.||+.|+. ++|+||+|+. +++++++++++|+
T Consensus 344 ~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~al~rl~ 419 (430)
T PLN00145 344 KCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLEDGLERLK 419 (430)
T ss_pred CCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHHH
Confidence 77764 689999999999742100 1112346888899999999999999974 6899999995 8999999999999
Q ss_pred HHHhhhhc
Q 011801 422 AFVQQDKE 429 (477)
Q Consensus 422 ~~~~~~~~ 429 (477)
+++.+++.
T Consensus 420 ~~~~~~~~ 427 (430)
T PLN00145 420 SFCLRHAK 427 (430)
T ss_pred HHHHHhcc
Confidence 99987654
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=416.48 Aligned_cols=343 Identities=22% Similarity=0.411 Sum_probs=278.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhhhCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
...|++..|.++||++||+|+.+.+| +.+++++|++|+|+++|+.+++++|+ .+||.|+++.|+|+.|...++.. |
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g--~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~-g 237 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH-G 237 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccC--CCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHc-C
Confidence 45699999999999999999988766 66889999999999999999999998 48999999999999999988877 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.++++++++++++|.+|+++|++++++....+.++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.+++
T Consensus 238 ~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~ 317 (534)
T PLN02231 238 GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENV 317 (534)
T ss_pred CEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 99999999877789999999999998765556689999999999999999999999999999999999999999999998
Q ss_pred cC-CCCcccHHHhhhhccC--CCCcEEEEecCCccc-CCCCceEEEEEeC--CHHHHHHHHHhcccC-CCchHHHHHHHH
Q 011801 238 FS-SPKFTSVAEVIQEMDC--NRDLIHIIYSLSKDM-GLPGFRVGIVYSF--NDTVVNCGRKMSSFG-LVSSQTQYLLAS 310 (477)
Q Consensus 238 ~~-~~~~~s~~~~~~~~~~--~~~~viiv~SlSK~~-g~~G~RvG~i~~~--~~~i~~~~~~~~~~~-~vs~~~q~~~~~ 310 (477)
|+ +..+.++..+..+.+. ...++++++||||.+ |+||+|+||++++ ++.+.+.+.+..... ..+...|.++..
T Consensus 318 y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~ 397 (534)
T PLN02231 318 YVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASL 397 (534)
T ss_pred cCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Confidence 95 4566777766432111 123689999999975 8999999999874 455666554443332 245578888888
Q ss_pred hcCC-----hhhHHHHHH---HHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeec--cch-hhcc---CchHHHHH
Q 011801 311 MLSD-----DEFVDNFLV---ETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDL--RHL-LKEK---TLEGEIAL 375 (477)
Q Consensus 311 ~L~~-----~~~~~~~~~---~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l--~~~-~~~~---~~~~e~~l 375 (477)
+++. ..+ +.+++ +.++.+++|++.+.+.|+++ |+.|.+++||+|+|+++ +.. .... ....+..+
T Consensus 398 ~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~ 476 (534)
T PLN02231 398 VMSPPKPGDESY-ESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFY 476 (534)
T ss_pred HhCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHH
Confidence 8864 233 44443 45788999999999999998 89999999999999655 321 1100 00112346
Q ss_pred HHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+..++++.||.+.||+.|+.. +..+||++|+ .++++++++++||++++++
T Consensus 477 ~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~-~~~e~l~eal~RL~~~~~~ 527 (534)
T PLN02231 477 CKRLLNATGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVSRLTEFHKS 527 (534)
T ss_pred HHHHHHhcCEEEeCCcccCCCCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence 777888899999999999853 3457999996 4899999999999998865
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=408.82 Aligned_cols=347 Identities=20% Similarity=0.382 Sum_probs=286.8
Q ss_pred cccccccccccccH-HH-HHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 39 GVIQLGLAENQLCF-DL-IKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
++|+|+.+++.+++ +. +++.+.... .....|++..|.++||+++|+|+.+.+| +.+++++|++
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~i~i 94 (384)
T PRK06348 30 DIIDLSLGDPDLITDESIINAAFEDAK-------------KGHTRYTDSGGDVELIEEIIKYYSKNYD--LSFKRNEIMA 94 (384)
T ss_pred CcEEcCCCCCCCCCCHHHHHHHHHHHh-------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 57999999888753 32 333333211 1346799999999999999999987766 5578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||.|++++|+|+.+...++.. |.++++++++..++|.+|+++|+++++. ++++|+
T Consensus 95 t~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~ 167 (384)
T PRK06348 95 TVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMV-GGKPIILETYEEDGFQINVKKLEALITS------KTKAII 167 (384)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEecCCcCcCCcCCHHHHHHhhCc------CccEEE
Confidence 999999999999999999999999999999999998887 9999999986556889999999988753 788999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++||||||.+++.+++++|+++|++++++||+||+|.++.|+. .+.++..+.. ..+++++++||||.+|+||+|
T Consensus 168 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~----~~~~vi~~~SfSK~~~l~GlR 242 (384)
T PRK06348 168 LNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAG----MPERTITFGSFSKDFAMTGWR 242 (384)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCC----CcCcEEEEecchhccCCcccc
Confidence 99999999999999999999999999999999999999987764 3345444421 257899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 277 VGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
+||++++++ +...+..... ...++++.|.++..+|.+. ++++++.++.++++++.+.+.|++. ++.+.++++|
T Consensus 243 iG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg 318 (384)
T PRK06348 243 IGYVIAPDY-IIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGS 318 (384)
T ss_pred ceeeecCHH-HHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCee
Confidence 999999655 4444443322 2347889999999999753 4567788889999999999999887 7788889999
Q ss_pred EEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 354 ~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+|+|++++. ... ..+++..++++.||.|.||+.|+..+++++|||++ .+++++++++++|+++
T Consensus 319 ~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 319 IYAFINIKKTGLS------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIEVLEEAFNRIEKM 382 (384)
T ss_pred EEEEEecccCCCC------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHHHHHHHHHHHHhh
Confidence 999999973 221 23577888888899999999998666789999998 4899999999999864
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=410.61 Aligned_cols=365 Identities=21% Similarity=0.383 Sum_probs=296.3
Q ss_pred CCCcccccccccccc-----ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccC----C
Q 011801 35 QNPGGVIQLGLAENQ-----LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRG----G 105 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g----~ 105 (477)
.+..++|+|+.+... .+++.+.+.+.+.-.. .....|++..|.++||++||+|+++.++ .
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~ 98 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS-----------QECNGYPPTVGSPEAREAVATYWRNSFVHKESL 98 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCcHHHHHHHHHHHHhhccccccc
Confidence 356689999998754 3556666666553110 1346799999999999999999987532 1
Q ss_pred CCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 106 RVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 106 ~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++.+++++|++|+|+++++.+++.+++++||.|+++.|+|+.+...++.. |++++.++++.+++|.+|++++++++++
T Consensus 99 ~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~- 176 (412)
T PTZ00433 99 KSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAY-GIEMRFYNCRPEKDWEADLDEIRRLVDD- 176 (412)
T ss_pred cCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHc-CCEEEEEecCccccCcCCHHHHHHHhcc-
Confidence 35578999999999999999999999999999999999999999888877 9999999998667899999999887754
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. ..++++++|
T Consensus 177 -----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~~i~~~S 246 (412)
T PTZ00433 177 -----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDT-----TVPRVILGG 246 (412)
T ss_pred -----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccC-----CCceEEEcc
Confidence 7899999999999999999999999999999999999999999998887655556555422 235789999
Q ss_pred CCcccCCCCceEEEEEeCC-----HHHHHHHHHhcc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFN-----DTVVNCGRKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~-----~~i~~~~~~~~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
|||.||+||+|+||+++++ +.+...+++... .+.+++++|.++..++.+. . +.++++.++.++++++.+.+.
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~r~~l~~~ 324 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEGAMVLYNH 324 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999721 334444444333 3458999999999999763 2 567888899999999999999
Q ss_pred HhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHH
Q 011801 340 LEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALN 418 (477)
Q Consensus 340 L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~ 418 (477)
|++. |+.+..+++|+|+|++++...-. ....+.++++.+++++||.|.||+.|+. ++|+||||+. ++++++++++
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~al~ 400 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVE 400 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHH
Confidence 9885 78888899999999998741100 0112236888888778999999999964 6899999986 6889999999
Q ss_pred HHHHHHhhhh
Q 011801 419 RIAAFVQQDK 428 (477)
Q Consensus 419 ~l~~~~~~~~ 428 (477)
+|++++++++
T Consensus 401 ~l~~~~~~~~ 410 (412)
T PTZ00433 401 RIKAFCERHK 410 (412)
T ss_pred HHHHHHHHhc
Confidence 9999997643
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=409.35 Aligned_cols=350 Identities=24% Similarity=0.367 Sum_probs=287.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+++++. ++.+.+.+.+.-.. .....|++..|+++||+++|+|+++.+| +.++++ +|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~ii 97 (385)
T PRK09276 31 VDVISLGIGDPDLPTPDHIIEAMCKAVED-----------PENHQYPSYEGMLEFRKAVADWYKRRFG--VELDPETEVI 97 (385)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 35799999988774 45556655542110 1245799999999999999999987766 456777 599
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++..++.++++|||.|++++|+|+.|...++.. |+++++++++.+++|.+|++++++++.+ ++++|
T Consensus 98 ~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 170 (385)
T PRK09276 98 SLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFA-GGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLM 170 (385)
T ss_pred EccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceEE
Confidence 9999999999999999999999999999999999888877 9999999997666789999999887653 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++....++..+.. ..+++++++||||.||+||+
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~Gl 246 (385)
T PRK09276 171 FINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG----AKDVGIEFHSLSKTYNMTGW 246 (385)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC----CcCCEEEEecchhhcCCcch
Confidence 99999999999999999999999999999999999999988776555555554421 24678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++. .+.+.+... ...++.+.|.++..+|.+. +.++++.+++++++++.+.+.|++.|+++..+++|
T Consensus 247 RiG~~i~~~~l-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 322 (385)
T PRK09276 247 RIGFAVGNADL-IAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGLEVEPPKAT 322 (385)
T ss_pred hheeeeCCHHH-HHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999986554 444433322 2235668899999999753 45678888999999999999999999988888999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+|+|++++...+ ..++++.+++++||.|.||..|+..+++|+||+|+. +++++.+++++|++
T Consensus 323 ~~~~v~~~~~~~------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 323 FYVWAPVPKGYT------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred eEEEEECCCCCC------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 999999985432 235788888888999999999986667899999984 88999999999875
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=407.15 Aligned_cols=351 Identities=25% Similarity=0.366 Sum_probs=283.8
Q ss_pred ccccccccccccccH-H-HHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cE
Q 011801 38 GGVIQLGLAENQLCF-D-LIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RI 114 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i 114 (477)
.++|+|+.+....++ + .++........ .....|++..|.++||+++|+|+++.+| +.++++ +|
T Consensus 35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~i 100 (394)
T PRK05942 35 LDLIDLGMGNPDGAAPQPVIEAAIAALAD------------PQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEA 100 (394)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhC------------CCCccCCCCCCCHHHHHHHHHHHHHHHC--CCcCCCCeE
Confidence 457999877433322 2 33333332100 1245799999999999999999987766 557788 48
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++++..++.++++|||.|++++|+|+.+...+... |+++++++++.+++|.+|++++++++.+ ++|+
T Consensus 101 ~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 173 (394)
T PRK05942 101 LPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIA-GAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKI 173 (394)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEeecCCccCCccCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999998877766 9999999998777899999999988754 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++....++..+.. ..+++++++||||.||+||
T Consensus 174 i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~SfSK~~~~~G 249 (394)
T PRK05942 174 LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG----AKDIGVEFHTLSKTYNMAG 249 (394)
T ss_pred EEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC----ccccEEEEecchhccCChh
Confidence 999999999999999999999999999999999999999988776655455554421 2456788999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++ +.+.++.... ...+++++|.++..+|+.. ++++++.+++++++++.+.+.|++.|+.+.++++
T Consensus 250 lRiG~i~~~~~-l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 325 (394)
T PRK05942 250 WRVGFVVGNRH-IIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKA 325 (394)
T ss_pred hheeeeecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCe
Confidence 99999998654 5454444332 2347788999999999743 4567888899999999999999998998888999
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|+|+|++++.... ..+++..+++++||.|.||+.|+..+++|+|||++. +.+.+.+++++|+++-
T Consensus 326 ~~f~~~~~~~~~~------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~ 390 (394)
T PRK05942 326 TMYLWVPCPVGMG------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQAG 390 (394)
T ss_pred eeEEEEECCCCCC------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhh
Confidence 9999999985322 124667778888999999999976667899999984 6788888888887653
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=407.89 Aligned_cols=355 Identities=20% Similarity=0.287 Sum_probs=288.2
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCC-c
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPD-R 113 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~-~ 113 (477)
+.++|+|+.+++++. ++.+.+.+.+.-.. .....|++ .|.++||+++|+|+.+.+| +. ++++ +
T Consensus 43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~-----------~~~~~Y~~-~G~~~lr~aia~~~~~~~g--~~~~~~~~~ 108 (410)
T PRK06290 43 DMELIDMGVGEPDEMADESVVEVLCEEAKK-----------PENRGYAD-NGIQEFKEAAARYMEKVFG--VKDIDPVTE 108 (410)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCC-CCcHHHHHHHHHHHHHHcC--CCcCCCcce
Confidence 446899999998875 45555555542100 12346876 7999999999999987766 55 6786 7
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++++..++++++++||.|++++|+|+.|...++.. |+++++++++.+++|.+|++++++++.+ ++|
T Consensus 109 I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~k 181 (410)
T PRK06290 109 VIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYY-GGEVYNLPLLEENNFLPDLDSIPKDIKE------KAK 181 (410)
T ss_pred EEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEecCCCcCCcCCHHHHHHhhcc------cce
Confidence 999999999999999999999999999999999999888887 9999999998777899999999888754 789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++. +.++..+.. ..+++++++||||.+|+|
T Consensus 182 ~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~----~~~~~I~i~SfSK~~g~~ 256 (410)
T PRK06290 182 LLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPG----AKEVGVEIHSLSKAYNMT 256 (410)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCC----ccccEEEEeechhhcCCc
Confidence 999999999999999999999999999999999999999998877653 345444422 346789999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN 351 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~ 351 (477)
|+|+||++++++ +...+.+.... ..++.++|.++..+|+++++ +++.++.++++++.+.+.|++.|+.+.+++
T Consensus 257 GlRiG~ii~~~~-l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~ 331 (410)
T PRK06290 257 GWRLAFVVGNEL-IVKAFATVKDNNDSGQFIAIQKAGIYALDHPEI----TEKIREKYSRRLDKLVKILNEVGFKAEMPG 331 (410)
T ss_pred hhheEeEEeCHH-HHHHHHHHHhccccCCcHHHHHHHHHHhhCcHH----HHHHHHHHHHHHHHHHHHHHhCCCeecCCC
Confidence 999999999655 44444443332 23456899999999988654 677788899999999999999999988899
Q ss_pred ceEEEEeeccchhhc-cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 352 AGLFFWMDLRHLLKE-KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~-~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|+|++++..... ....+..++++.++++.+|.+.||+.|+ +|+||+++.. ++++.+++++.|++.+.+
T Consensus 332 g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 332 GTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEIKRRLSD 405 (410)
T ss_pred eeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence 999999999864311 0112334688889988788888998763 6999999864 789999999999998875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=407.56 Aligned_cols=353 Identities=22% Similarity=0.373 Sum_probs=295.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+... .....|.+..|.++||+++|+++++.+| +.+++++|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 98 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALD------------EGWTHYTPNAGIPELREAIAEYYKKFYG--VDVDVDNVIV 98 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcccEEE
Confidence 46899999998875 4555555554211 1234688888999999999999987666 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++.+++.+++++||.|++++|+|+.+...+... |+++++++++.+++|.+|++++++++++ ++++|+
T Consensus 99 t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~ 171 (391)
T PRK08361 99 TAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIA-EAKPIRIPLREENEFQPDPDELLELITK------RTRMIV 171 (391)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------ccEEEE
Confidence 999999999999999999999999999999999888876 9999999998777899999999998864 688999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++||+||||.+++.+++++|+++|+++++++|+||+|+++.|++....++... ..+++++++||||.+|+||+|
T Consensus 172 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~------~~~~~i~~~s~SK~~~~~GlR 245 (391)
T PRK08361 172 INYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY------APDNTILANSFSKTFAMTGWR 245 (391)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhc------CCCCEEEEecCchhcCCcHhh
Confidence 99999999999999999999999999999999999999887765544554443 346899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 277 VGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
+||++++++.+.. +.+.. ..+.++++.|.++..+|+++++ .+++++.+++++++++.+.+.|++. |+.+..+++|
T Consensus 246 iG~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~ 323 (391)
T PRK08361 246 LGFVIAPEQVIKD-MIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGA 323 (391)
T ss_pred hhhhccCHHHHHH-HHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEE
Confidence 9999996655443 33332 2355788999999999988765 4578888999999999999999987 8888899999
Q ss_pred EEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|++++. ..+ ..++...+++++||.|.||+.|+..+++||||+++. +++++++++++|++++++
T Consensus 324 ~~~~~~l~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 324 FYVFANIDETGMS------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKALEE 390 (391)
T ss_pred EEEEEECCCCCCC------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999999984 111 235777777778999999999987667899999995 788999999999998864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=401.97 Aligned_cols=358 Identities=22% Similarity=0.422 Sum_probs=293.4
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++++. ++.+.+.+.+... .....|++..|.++||+++++++++.++ +.+++ ++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 95 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAID------------ANQSHYTGMAGLLELRQAAADFVKEKYN--LDYAPENEIL 95 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46899999998875 4556666554211 1234698889999999999999987666 44554 7899
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++. ++|.+|++++++++++. ..++++|
T Consensus 96 it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~i 170 (391)
T PRK07309 96 VTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLV-GAEIVEIDTTE-NDFVLTPEMLEKAILEQ---GDKLKAV 170 (391)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhhcc---CCCeEEE
Confidence 9999999999999999999999999999999999888877 99999999764 56889999999988642 2368999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.|++..+.++.+. ..+++++++||||.||+||+
T Consensus 171 ~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~------~~~~~i~~~S~SK~~g~~Gl 244 (391)
T PRK07309 171 ILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY------LPDQTILINGLSKSHAMTGW 244 (391)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh------ccCCEEEEecChhhccCccc
Confidence 999999999999999999999999999999999999999988866555666554 34789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 276 RVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
|+||++++++.+........ ....++.++|.++..+|++..+ +....++.++++++.+.+.|++.|+.+..+++|+
T Consensus 245 RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~ 321 (391)
T PRK07309 245 RIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAF 321 (391)
T ss_pred eeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeE
Confidence 99999997665544433221 2235788999999999987643 1345677888999999999999999999999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
|+|++++.... .++.++++.++++.||.|.||+.|+..+++||||+++. +.+++++++++|++++++.+
T Consensus 322 ~~~~~l~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 322 YIFAKIPAGYN----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred EEEEECCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhhc
Confidence 99999985421 12335777778788999999999987778899999986 78999999999999997643
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=398.23 Aligned_cols=341 Identities=22% Similarity=0.370 Sum_probs=281.2
Q ss_pred cccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEEe
Q 011801 40 VIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVMG 117 (477)
Q Consensus 40 ~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t 117 (477)
+|+|+.+.+.++ ++.+.+.+++.. .....|+++.|.++||+++++|+++.+| +.++++ +|++|
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~Iiit 66 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAV-------------PEVSQYPSALGTKALREAISGWFERRFG--VKLDPDAQVLPS 66 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHH-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEEc
Confidence 578888877665 566666666531 2356799999999999999999988777 567888 99999
Q ss_pred CChHHHHHHHHHHhcCCC---CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 118 GGATGANELIMFCLANPG---DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~G---d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+++++..++.+++++| |.|++++|+|+.|...++.. |+++++++++.+++|++|++++++++++ ++|+
T Consensus 67 ~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~ 139 (350)
T TIGR03537 67 AGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFA-GGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKI 139 (350)
T ss_pred CChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhc-CCEEEEcccCcccCCccCHHHHHHhhhh------ccEE
Confidence 999999999999999887 69999999999999999887 9999999997667899999999998865 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
+++++||||||.+++.+++++|+++|+++|++||+||+|..+.++. ...++... ..+++++++||||.+|+||
T Consensus 140 i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~------~~~~~i~~~s~SK~~g~~G 212 (350)
T TIGR03537 140 VWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEV------GIENVLAFHSLSKRSGMTG 212 (350)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhc------CcCCEEEEeecccccCCcc
Confidence 9999999999999999999999999999999999999999876654 33444332 3478999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++ +...++... .++ ..+.+.|.++..++.+.+ ++++.+++++++++.+.+.|++.|+++.++++
T Consensus 213 lRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g 287 (350)
T TIGR03537 213 YRSGFVAGDEK-LISFLRKLRANFGVASPDFVQAAAKAAWSDDN----HVLERRKIFKRKRDLFIEFFNKVGLEYLYPDA 287 (350)
T ss_pred ccceeeecCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHhCCcH----HHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence 99999998544 444444433 232 234467888877777644 46677889999999999999999998889999
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
|+|+|++++...+ ..++++.+++ +||.|.||+.|+...+++||++++ .+++++++++++|++
T Consensus 288 ~~~~~~~~~~~~~------~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~-~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 288 TFYLWVKVPSGID------AKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALV-PTLEECEEALRLWER 349 (350)
T ss_pred EEEEEEECCCCCC------HHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHhc
Confidence 9999999985322 2357777765 599999999998766789999997 588999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=408.28 Aligned_cols=351 Identities=19% Similarity=0.281 Sum_probs=279.6
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.++++.+ ++.+.+.+.+.-... ........|++..|.++||+++|+|+.+.+| +.+++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 103 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEM-------GTAETFRGYGPEQGYDFLREKIAENDYQARG--CDISADEIF 103 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhcc-------cccCCccCCCCCCCCHHHHHHHHHHHHHhcC--CcCChhhEE
Confidence 346899999998875 355555555421100 0001346798889999999999999877766 568899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE-----------EEEEeccCCCCcccCHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ-----------IVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~-----------~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+|+|+++++.+++ .+++|||+|++++|+|+.|...++.. |.+ +++++++.+++|.++.++
T Consensus 104 it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------- 174 (409)
T PRK07590 104 ISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMA-GRTGEANEDGRYSGIVYLPCTAENNFVPELPE------- 174 (409)
T ss_pred ECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCcccccccccccceeEeecccccCCcccCcc-------
Confidence 9999999999875 45689999999999999999888877 886 899998766667666431
Q ss_pred HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEe
Q 011801 185 AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~ 264 (477)
.++|+|++||||||||.+++.+++++|+++|+++|++||+||+|.++.+++....++..+.. ..+++++++
T Consensus 175 -----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~----~~~~vi~~~ 245 (409)
T PRK07590 175 -----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEG----ARECAIEFR 245 (409)
T ss_pred -----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCC----cccceEEEe
Confidence 27899999999999999999999999999999999999999999988776543345544321 236799999
Q ss_pred cCCcccCCCCceEEEEEeCCHHHHH-----------HHH-H-hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 011801 265 SLSKDMGLPGFRVGIVYSFNDTVVN-----------CGR-K-MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAK 331 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~~~~~i~~-----------~~~-~-~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~ 331 (477)
||||.+|+||+|+||++++++.+.. ... + ...+..+|.++|.++..++.+.. ..++++.++.+++
T Consensus 246 SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~ 323 (409)
T PRK07590 246 SFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDYYME 323 (409)
T ss_pred cCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHHHHH
Confidence 9999999999999999997765531 111 1 12334578899999999887643 3568888999999
Q ss_pred HHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 332 RHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 332 r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+++.+.+.|++.|+.+..+.+|+|+|++++.... ..+++..+++++||.+.||+.|+..+.+|+||+++. +++
T Consensus 324 ~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~ 396 (409)
T PRK07590 324 NAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMS------SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SRE 396 (409)
T ss_pred HHHHHHHHHHhcCCceecCCcceEEEEECCCCCC------HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CHH
Confidence 9999999999999888888899999999985322 235778888888999999999986667899999753 899
Q ss_pred HHHHHHHHHHHH
Q 011801 412 TLQVALNRIAAF 423 (477)
Q Consensus 412 ~l~~~l~~l~~~ 423 (477)
++++++++|+++
T Consensus 397 ~l~~~l~rl~~~ 408 (409)
T PRK07590 397 NVLEAMERIKKA 408 (409)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=404.03 Aligned_cols=359 Identities=24% Similarity=0.398 Sum_probs=295.0
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.+.+.++ ++.+.+.+.+... +....|++..|.++||+++++++.+.+| +.+++++|+
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~ 97 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIE------------RGETKYTLVNGTPALRKAIIAKLERRNG--LHYADNEIT 97 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 346899999988775 3555555554211 1235799999999999999999987766 456789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+..++.+++++||.|++++|+|+.|...+... |.+++.++++.+++|.+|++++++++++ ++++|
T Consensus 98 ~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v 170 (402)
T PRK06107 98 VGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLAN-DGTPVIVACPEEQGFKLTPEALEAAITP------RTRWL 170 (402)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHhhcCc------CceEE
Confidence 9999999999999999999999999999999998877766 8888888887566789999999988753 78899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhc-CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDK-NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~-~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
+++||+||||.+++.+++++|+++|+++ ++++|+||+|+++.|.+..+.++.....+ ..+++++++||||.||+||
T Consensus 171 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~---~~~~vi~~~S~SK~~~~pG 247 (402)
T PRK06107 171 ILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPE---LRDRVLVTNGVSKTYAMTG 247 (402)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcC---ccCCEEEEeccchhhcCcc
Confidence 9999999999999999999999999998 99999999999888877666666655331 2468999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN 351 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~ 351 (477)
+|+||++++++ +.+.+.... ....++.++|.++..+|.++ +.++++.++.++++++.+.+.|++. |+.+.+++
T Consensus 248 lRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~ 323 (402)
T PRK06107 248 WRIGYAAGPAD-LIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPD 323 (402)
T ss_pred cceeeeecCHH-HHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC
Confidence 99999999655 444444433 23458899999999999754 3567888889999999999999987 88888899
Q ss_pred ceEEEEeeccchhhc---cC--chHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 352 AGLFFWMDLRHLLKE---KT--LEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~---~~--~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|+|++++...+. .. ...+.+++..+++++||.+.||+.|+. ++|+||+|+. +++++++++++|++++++
T Consensus 324 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 400 (402)
T PRK06107 324 GAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEACARIERAVAA 400 (402)
T ss_pred cceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence 999999998643111 11 123456888888889999999999964 6799999996 899999999999999865
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=400.83 Aligned_cols=349 Identities=24% Similarity=0.363 Sum_probs=288.2
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++|+|+.+++..+ ++.+.+.+.+.-. .....|++..|.+++|+++|+|+++.+| +.+++++|++|
T Consensus 33 ~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~it 98 (387)
T PRK08960 33 DVIHLEIGEPDFTTAEPIVAAGQAALA------------AGHTRYTAARGLPALREAIAGFYAQRYG--VDVDPERILVT 98 (387)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCccCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEEc
Confidence 5799999998864 5556666555311 1234688889999999999999987766 55789999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++.+++.++++|||.|++++|+|+.+...+... |.+++.++++.+++|.+|++++++++++ +++++++
T Consensus 99 ~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i 171 (387)
T PRK08960 99 PGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLV-EGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGALV 171 (387)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEEE
Confidence 99999999999999999999999999999999888877 9999999998777899999999988764 6788999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
++||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. ..++.. ..+++++++||||.+|+||+|+
T Consensus 172 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~-------~~~~vi~~~S~SK~~g~~GlRi 243 (387)
T PRK08960 172 ASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLE-------VDDDAFVLNSFSKYFGMTGWRL 243 (387)
T ss_pred ECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhh-------ccCCEEEEeecccccCCcccEE
Confidence 99999999999999999999999999999999999998877543 344332 2367999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCceE
Q 011801 278 GIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNAGL 354 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~g~ 354 (477)
||++++++. .+.+.+... ...+|.+.|.++..+|.+. . ++++++.++.++++++.+.+.|++.|+.+ ..+.+|+
T Consensus 244 G~~~~~~~~-~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~ 320 (387)
T PRK08960 244 GWLVAPPAA-VPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAF 320 (387)
T ss_pred EEEEcCHHH-HHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeE
Confidence 999997654 444444332 2346889999999998753 2 56788889999999999999999988765 4688999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|++++.... +..++++.+++++||.|.||+.|+.. .++|+||||+. +.+.+.+++++|+++++
T Consensus 321 f~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 321 YLYADISAFGG-----DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGLR 386 (387)
T ss_pred EEEEeccccCC-----CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 99999985211 12367788888889999999999753 35799999996 78999999999998875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=401.18 Aligned_cols=348 Identities=19% Similarity=0.325 Sum_probs=283.8
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~~ 116 (477)
++|+|+.+++.++ ++.+.+.+.+... .....|++..|.++||+++++++.+.+| +.+++ ++|++
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~i 95 (384)
T PRK12414 30 DALNLSQGAPNFAPDPALVEGVARAMR------------DGHNQYAPMAGIAALREALAEKTERLYG--ARYDPASEVTV 95 (384)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHH------------hCCCCcCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 5799999998875 4556665554210 1235799999999999999999988777 34455 68999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..+++++++|||.|+++.|+|..+...++.. |+++++++++. ++|.+|+++|++++++ ++|+|+
T Consensus 96 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~ 167 (384)
T PRK12414 96 IASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQ-GATPVAIKLSP-EDFRVNWDEVAAAITP------RTRMII 167 (384)
T ss_pred ECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHc-CCEEEEEecCc-cccccCHHHHHhhcCc------ccEEEE
Confidence 999999999999999999999999999999998888877 99999999874 4688999999988753 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|+++|+++|+||+|.++.|++..+.++..... ..+++++++||||.||+||+|
T Consensus 168 i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~----~~~~~i~~~SfSK~~~~pGlR 243 (384)
T PRK12414 168 VNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRE----LAERSVIVSSFGKSYHVTGWR 243 (384)
T ss_pred EcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcC----ccCcEEEEecccccccCccce
Confidence 9999999999999999999999999999999999999998887654445443321 246899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 277 VGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+||++++++.+ +.+.+.. ....++.++|.++..+|.++.+ ..+.++.++++++.+.+.|++.|+.+.++.+|+
T Consensus 244 iG~~v~~~~l~-~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~ 318 (384)
T PRK12414 244 VGYCLAPAELM-DEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFELLPSEGSF 318 (384)
T ss_pred EEEEecCHHHH-HHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCeecCCCcce
Confidence 99999976544 4444333 2344788999999999988654 234677889999999999999999888999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC--CCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE--PGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~--~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
|+|++++..... .+.+++..++.++||.|.||+.|+..+ .+|+||+|+. +++++++++++|.+
T Consensus 319 ~~~~~~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 319 FMLARFRHFSDE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred EEEEcccccCCC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 999998753211 122567677888899999999996433 5799999997 79999999999975
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=399.50 Aligned_cols=352 Identities=24% Similarity=0.440 Sum_probs=291.4
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++++++ ++.+.+.+.+.-. .....|++..|.++||+++|+++.+.+| +.+++++|++
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~la~~~~~~~~--~~~~~~~i~~ 89 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALA------------DGETFYTHNLGIPELREALARYVSRLHG--VATPPERIAV 89 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCcCcceEEE
Confidence 36899999999886 4666666655311 1123599989999999999999987766 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++++..++.+++++||.|++++|+|+.+...++.. |++++.++++.+ ++|.+|++++++++.+ ++++|
T Consensus 90 t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~i 162 (382)
T PRK06108 90 TSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRAL 162 (382)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHC-CCEEEEeeCCCCCCCccCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999999888876 999999998753 5788999999988753 78899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC-CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS-SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~-~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++||||||.+++.+++++|+++|+++|+++|+||+|+++.++ +....++..+.. ..+++++++||||.||++|
T Consensus 163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~G 238 (382)
T PRK06108 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE----PDDRIIFVNSFSKNWAMTG 238 (382)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC----CcCCEEEEeechhhccCcc
Confidence 99999999999999999999999999999999999999998776 333344444432 2468999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN 351 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~ 351 (477)
+|+||++++++.+ +.+.+... ...++.+.|.++..+|.+. +.++++.+++++++++.+.+.|++. |+.+..++
T Consensus 239 ~RiG~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 314 (382)
T PRK06108 239 WRLGWLVAPPALG-QVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPGVEVAKPD 314 (382)
T ss_pred cceeeeeCCHHHH-HHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 9999999966544 43433322 2347889999999999875 3456778889999999999999887 88888899
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|+|++++...+ ..++++.+++++||.+.||+.|+..+++++|++++. +++++++++++|+++++
T Consensus 315 ~g~~~~~~l~~~~~------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 315 GAMYAFFRIPGVTD------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred eeEEEEEeCCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 99999999985321 235788888888999999999976667899999997 99999999999999875
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=398.10 Aligned_cols=354 Identities=26% Similarity=0.402 Sum_probs=285.4
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+.+..+. +.+.+.+.+... .....|++..|.++||+++|+++++.+| +.++++ +|++
T Consensus 27 ~~i~l~~g~p~~~~p~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~i~~ 92 (387)
T PRK08912 27 GAINLGQGFPDDPGPEDVRRAAADALL------------DGSNQYPPMMGLPELRQAVAAHYARFQG--LDLDPETEVMV 92 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcccEEE
Confidence 57999887755532 223333332100 1235799999999999999999987766 557888 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++.+++..++++||.|++++|+|+.+...++.. |++++.++++. ++|.+|++++++++.+ ++|+|+
T Consensus 93 t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~v~ 164 (387)
T PRK08912 93 TSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRA-GGVPRLVRLEP-PHWRLPRAALAAAFSP------RTKAVL 164 (387)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccCcCCHHHHHHHhCc------cceEEE
Confidence 999999999999999999999999999999999988877 99999999864 4688999999988753 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|++++++||+||+|.++.|++..+.++..+.. ..+++++++||||.||+||+|
T Consensus 165 l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~GlR 240 (387)
T PRK08912 165 LNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG----MRERTVKIGSAGKIFSLTGWK 240 (387)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC----ccCceEEEeechhhccCcCce
Confidence 9999999999999999999999999999999999999988887655556554321 246899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+||++++++.+ +.+...... +.+++..|.++...|... ++++++.+++++++++.+.+.|++.|+.+.++++|+
T Consensus 241 iG~~~~~~~~~-~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~ 316 (387)
T PRK08912 241 VGFVCAAPPLL-RVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTY 316 (387)
T ss_pred eEEEecCHHHH-HHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcce
Confidence 99999966544 434333222 345667888887777532 345678888999999999999999999988999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+|++++..... .++.++++.++++.||.|.||..|+.. .++|+||+|+. +++.+++++++|++++++
T Consensus 317 ~l~~~l~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 317 FLTVDLAPLGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAARRR 386 (387)
T ss_pred EEEecccccCCC---CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 999999852110 123468888888889999999999643 35899999996 789999999999998865
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=399.20 Aligned_cols=357 Identities=21% Similarity=0.328 Sum_probs=288.5
Q ss_pred cccccccccccc----c-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 38 GGVIQLGLAENQ----L-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 38 ~~~i~l~~~~n~----~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
.++|+|+.++.. + +++.+.+.+.+.-.. .....|++..|.++||+++|+++++. + ..++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~-~--~~~~~~ 96 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS-----------GKYNGYAPTVGALSAREAIASYYHNP-D--GPIEAD 96 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc-----------cCCCCCCCCCCCHHHHHHHHHHHhhc-C--CCCCHH
Confidence 367999988753 3 345555555442110 12356988899999999999999863 3 347899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++++.+++.+++++||.|++++|+|+.+...++.. |+++++++++.+++|++|++++++++++ ++
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESM-GIEVKLYNLLPDKSWEIDLKQLESLIDE------KT 169 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHHhcc------Cc
Confidence 9999999999999999999999999999999999999888877 9999999987666789999999987754 67
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. ..++++++||||.|++
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~vi~~~SfSK~~~~ 244 (401)
T TIGR01264 170 AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS-----TVPILSCGGLAKRWLV 244 (401)
T ss_pred eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC-----CCcEEEEccCcccCCC
Confidence 89999999999999999999999999999999999999999998887655566665532 2358999999999999
Q ss_pred CCceEEEEEeCCH-----HHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CC
Q 011801 273 PGFRVGIVYSFND-----TVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GI 345 (477)
Q Consensus 273 ~G~RvG~i~~~~~-----~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi 345 (477)
||+|+||+++++. .+.+.++++. ..+.+++++|.++..+|.+. . +.++++.++.++++++.+.+.|+++ |+
T Consensus 245 ~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~r~~l~~~L~~~~~~ 322 (401)
T TIGR01264 245 PGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT-P-QEYFDGTLSVLESNAMLCYGALAAVPGL 322 (401)
T ss_pred ccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998752 2333333332 23457889999999999763 2 5678888999999999999999988 77
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+..+++|+|+|++++..... ....+.+++..+++++||.|.||+.|+ .++++|++|+. +++++++++++|+++++
T Consensus 323 ~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gI~v~pg~~f~--~~~~iRis~~~-~~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 323 RPVMPSGAMYMMVGIEMEHFP-EFKNDVEFTERLVAEQSVFCLPGSCFE--YPGFFRVVLTV-PVVMMEEACSRIQEFCE 398 (401)
T ss_pred cccCCCeeeEEEEEecccccC-CCCCHHHHHHHHHHhCCEEEeCchhcC--CCCeEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 777789999999998642000 111234678888878899999999986 37899999986 78999999999999987
Q ss_pred h
Q 011801 426 Q 426 (477)
Q Consensus 426 ~ 426 (477)
+
T Consensus 399 ~ 399 (401)
T TIGR01264 399 R 399 (401)
T ss_pred c
Confidence 5
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=396.84 Aligned_cols=341 Identities=18% Similarity=0.258 Sum_probs=272.6
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++|+|+.++++++ ++.+.+.+.+.. .....|++..|.++||+++|+|+++.+| +.+++++|++|
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~l~~~~g--~~~~~~~I~it 89 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNA-------------HLLNKYPKSAGEESLREAQRGFFKRRFK--IELKENELIPT 89 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHh-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEEe
Confidence 7899999998875 355666665531 2356799999999999999999988777 55789999999
Q ss_pred CChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 118 GGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 118 ~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+++++..++..++ .+||.|++++|+|+.|...++.. |+++++++++.+++|.+|..+.+ ++ ++|+|
T Consensus 90 ~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~~~--~~-------~~k~v 159 (374)
T PRK05839 90 FGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-RAKVLLMPLTKENDFTPSLNEKE--LQ-------EVDLV 159 (374)
T ss_pred cCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhc-CCEEEEeecccccCCcCCcchhh--hc-------cccEE
Confidence 999999999888764 57999999999999999998876 99999999987778888865532 21 68899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc-cCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM-DCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~-~~~~~~viiv~SlSK~~g~~G 274 (477)
+++|||||||++++.+++++|+++|+++|++||+||+|.++.++. .+.++....... ....+++++++||||.||+||
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 999999999999999999999999999999999999999864433 344544322100 013478999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++ +.+.+.+... .+.++.++|.++..++.+.+ ++++.+++++++++.+.+.| ++. .+++
T Consensus 239 lRiG~ii~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l---~~~--~p~g 308 (374)
T PRK05839 239 LRSGFIAGDAS-ILKKYKAYRTYLGCASPLPLQKAAAVAWLDDE----HAEFFRNIYAKNLKLAREIL---GIT--IPPA 308 (374)
T ss_pred ceeEEEecCHH-HHHHHHHHHhhcCCCCChHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHhc---CCC--CCCe
Confidence 99999999654 4444444332 23478889999888887644 45667788888888887766 443 6788
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|+|++++. +.++++.+++++||.|.||+.|+.. +++|+|||++. +++++.+++++|+++++
T Consensus 309 g~fi~~~~~~---------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 309 TFYVWLPVDN---------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIKTYLE 373 (374)
T ss_pred eEEEEEeCCC---------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHhh
Confidence 9999999872 1357888887789999999988753 36899999985 79999999999999885
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=401.40 Aligned_cols=358 Identities=32% Similarity=0.558 Sum_probs=300.1
Q ss_pred ccccccccccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 39 GVIQLGLAENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.+|+|+.+.+... .+.+++++++..+ +.........|+++.|.++||+++|+|+++..| +.++++ +|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 72 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIR-------GAATSSSFLGYPPPQGYPELREAIADFLGRRYG--VPVDPEANIL 72 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHH-------HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHT--HHTTGGEGEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHH-------HhhcccccccCCCchhhHHHHHHHHHHhhhccC--cccccceEEE
Confidence 4799999887764 2334444433211 011124567899999999999999999996655 667889 999
Q ss_pred EeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+++|+++++..++.++ .++||+|++++|+|+.+...++.. |.++++++++..++|.+|+++|++.+++.+.++.++++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 151 (363)
T PF00155_consen 73 VTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLL-GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKA 151 (363)
T ss_dssp EESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHT-TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEE
T ss_pred EecccccchhhhhhcccccccccceecCCcccccccccccc-Cceeeeccccccccccccccccccccccccccccccce
Confidence 9999999999999999 899999999999999999999987 99999999987789999999999999876555546789
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|+++||+||||.+++.+++++|+++|+++|++||+||+|+++.+..+.+.+....++ ...++++++||||.||+||
T Consensus 152 v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~----~~~~vi~~~S~SK~~g~~G 227 (363)
T PF00155_consen 152 VLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLD----EDDNVIVVGSLSKSFGLPG 227 (363)
T ss_dssp EEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHT----TTSTEEEEEESTTTTTSGG
T ss_pred eeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCccccccc----ccccceeeeeccccccccc
Confidence 999999999999999999999999999999999999999998887665444333333 3345999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+|+||+++ ++.+.+.++.+...+..+++.|.++..++.+.....+++++.+++++++++.+.+.|++.|+.+.++++|+
T Consensus 228 lRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~ 306 (363)
T PF00155_consen 228 LRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPEAGF 306 (363)
T ss_dssp GTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSBSS
T ss_pred cccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeeccCcc
Confidence 99999999 55666666666555556889999999999987755668999999999999999999999999999999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
|+|+.++.. ++.++++.++++.||.+.||..|+. ++|+|++++..+++++++++++|
T Consensus 307 ~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 307 FLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred EEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 999999864 3447889999888999999999987 88999999667999999999987
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=396.87 Aligned_cols=353 Identities=22% Similarity=0.383 Sum_probs=286.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|.++||+++|+|+++.+| +.+++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 95 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALR------------RGVTQYTSALGLAPLREAIAAWYARRFG--LDVAPERIVV 95 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHhEEE
Confidence 46899999988764 4555555554211 1345699888999999999999987766 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||.|++++|+|+.+...++.. |.++++++++.+++|.+|++++++.+.+ ++++|+
T Consensus 96 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 168 (388)
T PRK07337 96 TAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAA-EGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVL 168 (388)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCcCCHHHHHhhcCc------cceEEE
Confidence 999999999999999999999999999999998888776 9999999998667899999999988754 788999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|+++++++|+||+|.++.|.+. +.+... ..+++++++||||.+|+||+|
T Consensus 169 l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~-------~~~~vi~~~S~SK~~~~~G~R 240 (388)
T PRK07337 169 LASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALS-------LGDDVITINSFSKYFNMTGWR 240 (388)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhh-------ccCCEEEEEechhhcCCchhh
Confidence 999999999999999999999999999999999999998777543 233332 236789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc-c-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCce
Q 011801 277 VGIVYSFNDTVVNCGRKMS-S-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNAG 353 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~-~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~g 353 (477)
+||++++++.+ +.+.+.. . ...++.+.|.++..++.+..+ + ++++.++.++++++.+.+.|++.|+.+ ..+++|
T Consensus 241 iG~~~~~~~l~-~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~-~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g 317 (388)
T PRK07337 241 LGWLVVPEALV-GTFEKLAQNLFICASALAQHAALACFEPDTL-A-IYERRRAEFKRRRDFIVPALESLGFKVPVMPDGA 317 (388)
T ss_pred eeeeecCHHHH-HHHHHHHHHhccCCChHHHHHHHHHhccCch-H-HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCee
Confidence 99999976544 4343332 2 234788999999999876543 2 356778899999999999999988765 467899
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|+|++++....... ..+.+++..+++++||.|.||+.|+.. .++||||||+. +++.+++++++|++++
T Consensus 318 ~f~~~~~~~~~~~~~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 318 FYVYADCRGVAHPAA-GDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred EEEEEecccccCCCC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 999999985321111 123367788888889999999999753 36899999996 7999999999999875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=401.13 Aligned_cols=341 Identities=21% Similarity=0.297 Sum_probs=276.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++++|+.+....+ ++.+.+.+.+.. .....|++..|.++||+++++|+++..+ .+++|++
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-----~~~~Iii 146 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLS-------------RTPRLYGDAPVSPELHAWAARWLRDDCP-----VAFEIDL 146 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhh-------------hhhhhcCCcCCCHHHHHHHHHHHhhccC-----CcCeEEE
Confidence 35788988754433 244555444421 1245799999999999999999985322 3569999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.++++++++|||.|++++|+|+.|...++.. |+++++++++.+ .+|+++|++++++ ++|+++
T Consensus 147 t~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~---g~~~~~l~~~~~~------~~k~i~ 216 (431)
T PRK15481 147 TSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYA-GFSASPVSVDAE---GMQPEKLERALAQ------GARAVI 216 (431)
T ss_pred ecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCeEEeeccCCC---CCCHHHHHHHHhc------CCCEEE
Confidence 999999999999999999999999999999999999887 999999998643 3789999988864 678888
Q ss_pred Ee-CCCCCcccCCCHHHHHHHHHHHHhc-CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 197 IT-NPSNPLGTTLDRDTLKSLVSFINDK-NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 197 i~-nP~NPtG~~~~~~~l~~l~~~~~~~-~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++ |||||||.+++.+++++|+++|+++ +++||+||+|.++.+.. +.+.... ..+++++++||||.|| ||
T Consensus 217 ~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~--~~~~~~~------~~~~vi~~~SfSK~~~-~G 287 (431)
T PRK15481 217 LTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP--YHSVIPQ------TTQRWALIRSVSKALG-PD 287 (431)
T ss_pred ECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC--CCCCCcC------CCCCEEEEeeeccccC-CC
Confidence 87 9999999999999999999999999 99999999999876543 1222111 3468999999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
+|+||++++++.+......... ...+|.++|.++..+|+++++ ++++++.++.++++++.+.+.|++.|+.+..+++|
T Consensus 288 lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg 366 (431)
T PRK15481 288 LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIAIPSPGDG 366 (431)
T ss_pred ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCe
Confidence 9999999966544333222222 134789999999999999877 77889999999999999999999999888788999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-CCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE-PGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~-~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++.. ..+++..+. ++||.|.||+.|+... .+|+||||+..+++++++++++|++++.
T Consensus 367 ~f~~~~l~~~--------~~~~~~~l~-~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 367 LNLWLPLDTD--------SQATALTLA-KSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred EEEEEECCCC--------HHHHHHHHH-HCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 9999999841 124666665 5699999999996532 4689999998889999999999999875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=393.90 Aligned_cols=352 Identities=25% Similarity=0.445 Sum_probs=289.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
+++|+|+.+.+.++ ++.+.+.+.+..+ .....|++..|.++||+++|+++++.+| +.++++ +|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~~I~ 93 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAIT------------ENYTSYTHNAGLLELRKAACNFVKDKYD--LHYSPESEII 93 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46799999976554 3555565555211 1245798889999999999999987666 557888 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+.+...++.. |+++++++.+. ++|.+|.+++++.+.+ +++++
T Consensus 94 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~i 165 (387)
T PRK07683 94 VTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLC-GAKPVFIDTRS-TGFRLTAEALENAITE------KTRCV 165 (387)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHc-CCEEEEeecCc-ccCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 99999999874 5788899999887753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|+++|++||+||+|+++.|+++ ..++.+..+ .++++++++||||.+|+||+
T Consensus 166 ~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~----~~~~vi~~~s~SK~~~~pGl 240 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPE----MREKTIVINGLSKSHSMTGW 240 (387)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccC----CcCCeEEEeeccccccCccc
Confidence 9999999999999999999999999999999999999998877654 345554422 35789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++.+.. +.+... ...++++.|.++..+|.+++ .++++.+++++++++.+.+.|.+.|+.+.++++|
T Consensus 241 RiG~i~~~~~l~~~-~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 316 (387)
T PRK07683 241 RIGFLFAPSYLAKH-ILKVHQYNVTCASSISQYAALEALTAGK---DDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGA 316 (387)
T ss_pred eeEEEEcCHHHHHH-HHHHHHhccCCCChHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCee
Confidence 99999996654443 333222 33467889999999998753 3567778889999999999999989888899999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|+.++... ..+.++...+++++||.|.||+.|+..++++|||+++. +++++.+++++|++++++
T Consensus 317 ~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 317 FYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred EEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 99999987421 11225667778888999999999987667899999996 899999999999999865
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=397.87 Aligned_cols=350 Identities=21% Similarity=0.335 Sum_probs=287.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|.+++|+++++++.+.+| +..+++ +|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~~a~~l~~~~~--~~~~~~~~i~ 95 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMA------------AGHNQYPPMTGVAALREAIAAKTARLYG--RQYDADSEIT 95 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 35799999887764 3555555554210 1235798889999999999999988776 445665 899
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+..++.+++++||+|++++|+|+.+...++.. |.++++++++. .+|.+|++++++++++ ++++|
T Consensus 96 ~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~v 167 (386)
T PRK09082 96 VTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELA-GGRAVRVALQP-PDFRVDWQRFAAAISP------RTRLI 167 (386)
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccccCCHHHHHHhcCc------cceEE
Confidence 9999999999999999999999999999999999988877 99999999874 3689999999988854 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++..+.++..... ..+++++++||||.+|+||+
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~----~~~~~i~~~S~SK~~~~~G~ 243 (386)
T PRK09082 168 ILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPE----LRERAFVVSSFGKTYHVTGW 243 (386)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcC----ccCcEEEEeechhhccchhh
Confidence 99999999999999999999999999999999999999998887655566655432 35789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +...+++.. ....++.+.|.+++.++... +.++++.++.++++++.+.+.|++.|+++.++++|
T Consensus 244 RiG~iv~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~ 319 (386)
T PRK09082 244 KVGYCVAPAA-LSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGT 319 (386)
T ss_pred hhhhhhCCHH-HHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCee
Confidence 9999999755 444444332 22347889999999999732 34577788899999999999999999999899999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+|+|++++.... . +..+++..+++++||.+.||+.|+. .++++||+|++. +++++++++++|++
T Consensus 320 ~~~~~~~~~~~~---~-~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 320 YFQLVDYSAISD---L-DDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred EEEEEeccccCC---C-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 999999984211 1 1236778888889999999999863 346799999996 89999999999975
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=392.62 Aligned_cols=359 Identities=21% Similarity=0.345 Sum_probs=281.8
Q ss_pred ccccccccc-cccc---cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 38 GGVIQLGLA-ENQL---CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 38 ~~~i~l~~~-~n~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
.++|+|+.+ ++++ +++.+.+.+.+. ......|++..|.++||+++|+|+.+... ..+++++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~i~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~ 97 (404)
T PRK09265 33 HKILKLNIGNPAPFGFEAPDEILRDVIRN-------------LPTAQGYSDSKGLFSARKAIMQYYQQKGI--PDVDVDD 97 (404)
T ss_pred CCeEEecCCCCCcCCCCCCHHHHHHHHHH-------------hhcCCCCCCCCCcHHHHHHHHHHHhccCC--CCCCccc
Confidence 467999885 3332 233344433331 11345799999999999999999975322 2478999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++++.+++.+++++||.|++++|+|+.+...++.. |.+++.++++.+++|.+|++++++++.+ +++
T Consensus 98 i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~ 170 (404)
T PRK09265 98 IYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLS-GGKPVHYLCDEEAGWFPDLDDIRSKITP------RTK 170 (404)
T ss_pred EEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhccc------cce
Confidence 999999999999999999999999999999999999888876 9999999887666789999999988753 789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+. ...++++++||||.+|+|
T Consensus 171 ~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-----~~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 171 AIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLA-----PDLLCVTFNGLSKAYRVA 245 (404)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcC-----CCceEEEEecchhhccCc
Confidence 999999999999999999999999999999999999999999888765556665542 224689999999999999
Q ss_pred CceEEEEEeC-CHH----HHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe
Q 011801 274 GFRVGIVYSF-NDT----VVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN 346 (477)
Q Consensus 274 G~RvG~i~~~-~~~----i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~ 346 (477)
|+|+||++++ +.. +.+.+.... ....++.++|.++..+|.+.+..+.+++. .+++.++++.+.+.|+++ |++
T Consensus 246 GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~L~~~~~~~ 324 (404)
T PRK09265 246 GFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWELLNAIPGVS 324 (404)
T ss_pred ccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999963 332 222222221 22347889999999999765443444433 346777889999999887 888
Q ss_pred EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 347 CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 347 ~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+..+++|+|+|++++..... ...+.+++..++.++||.|.||+.|++..++|+|++++ .+++++++++++|++++++
T Consensus 325 ~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~-~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 325 CVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL-PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred ccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence 88899999999999853211 11123455667778899999999998767889999996 5899999999999999976
Q ss_pred h
Q 011801 427 D 427 (477)
Q Consensus 427 ~ 427 (477)
+
T Consensus 402 ~ 402 (404)
T PRK09265 402 Y 402 (404)
T ss_pred h
Confidence 4
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=391.83 Aligned_cols=353 Identities=18% Similarity=0.349 Sum_probs=287.5
Q ss_pred cccccccccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC-CCcEEE
Q 011801 39 GVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD-PDRIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~~~i~~ 116 (477)
++++|+.+++++ +++.+.+++++.-.. .....|++..|.+++|+++++++.+..| +.++ +++|++
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~~~~~~l~~~~g--~~~~~~~~i~~ 94 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLAN-----------PENHKYQAVQGIPPLLEAITQKLQQDNG--IELNNEQAIVV 94 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEEE
Confidence 579999999876 445566666553110 1235799899999999999999987766 4455 678999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..++..++++||.|++++|+|..+...++.. |++++.++.+ ++|.+|++++++++++ ++|+|+
T Consensus 95 t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~------~~klv~ 165 (389)
T PRK05957 95 TAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMA-GCQPILVPTD--DNYQLQPEAIEQAITP------KTRAIV 165 (389)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEeecC--CCCCcCHHHHHHhcCc------CceEEE
Confidence 999999999999999999999999999999988777766 9999999875 4678999999998854 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|+++|++||+||+|.++.|+...+.+.....+ ...++++++||||.+|+||+|
T Consensus 166 ~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~GlR 241 (389)
T PRK05957 166 TISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPG----SGNHTISLYSLSKAYGFASWR 241 (389)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCC----ccCcEEEEecchhhccCccce
Confidence 9999999999999999999999999999999999999998887644445444322 346899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C-CeEecCCc
Q 011801 277 VGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G-INCLKSNA 352 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g-i~~~~~~~ 352 (477)
+||++++++ +.+.+..... ...++.++|.++..+|+++. .++++.++.++++++.+.+.|++. + +.+.++++
T Consensus 242 iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~g 317 (389)
T PRK05957 242 IGYMVIPIH-LLEAIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANG 317 (389)
T ss_pred eEEEecCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCe
Confidence 999999665 4444443332 23466789999999998742 235666677899999999999887 5 36778899
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
|+|+|++++...+ +.++++.++++.||.|.||+.|+...++|+||+|+..+++++++++++|.++++++
T Consensus 318 g~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 318 AFYCFLKVNTDLN------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred eEEEEEeCCCCCC------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 9999999975332 34688888887899999999997666679999998778999999999999998763
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=399.75 Aligned_cols=357 Identities=18% Similarity=0.274 Sum_probs=273.8
Q ss_pred ccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcc-cCCCCccC-CCcE
Q 011801 38 GGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKG-RGGRVTFD-PDRI 114 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~-~g~~~~~~-~~~i 114 (477)
.++|+++.++..+++ +.+.++.... .. .+|+++.|.+++|++|++++.+. .+...... +++|
T Consensus 100 ~~~i~l~~g~p~~~~~~~v~e~~~~~--------------~~-~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I 164 (527)
T PRK09275 100 RDAVSYVRDQLGFDADEFVYELVDGI--------------IG-DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDL 164 (527)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHH--------------hc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeE
Confidence 357899988877754 5566655432 11 36999999999999999965443 22222222 3589
Q ss_pred EEeCChHHHHHHHHHH-----hcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 115 VMGGGATGANELIMFC-----LANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~-----l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
++|+|+++|+..++.+ +++|||.|++++|+|+.|...++.. .|.++++++++++++|++|.+++++++.+
T Consensus 165 ~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~---- 240 (527)
T PRK09275 165 FAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP---- 240 (527)
T ss_pred EEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC----
Confidence 9999999999999886 6899999999999999999887654 24666777766667899999999987643
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++|+|+++|||||||.+++.+++++|+++|++ ++++||+||+|..+.+ .+.++... .++++++++||
T Consensus 241 --~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~------~~~~~I~v~Sf 309 (527)
T PRK09275 241 --SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAV------LPYNTILVYSF 309 (527)
T ss_pred --CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHh------CCCCEEEEeeh
Confidence 89999999999999999999999999999964 5999999999997643 34555443 34789999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHH-H-----------------------------------HHhcc--cCCCchHHHHH-
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNC-G-----------------------------------RKMSS--FGLVSSQTQYL- 307 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~-~-----------------------------------~~~~~--~~~vs~~~q~~- 307 (477)
||.||++|+|+||++++++.+.+. + +++.. ...+|++.|.+
T Consensus 310 SK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~ 389 (527)
T PRK09275 310 SKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQM 389 (527)
T ss_pred hhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 999999999999999987632211 1 12221 12356677775
Q ss_pred ----HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh---ccCc-------hHHH
Q 011801 308 ----LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK---EKTL-------EGEI 373 (477)
Q Consensus 308 ----~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~---~~~~-------~~e~ 373 (477)
+.++|... +.++++.++.+++|++.+.+.|. .++.+.++++++|+|++++.... ...+ .++.
T Consensus 390 al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~ 465 (527)
T PRK09275 390 ALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPV 465 (527)
T ss_pred HHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHH
Confidence 33445443 45688889999999999988882 23444578999999999985321 0111 1245
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+++.+++++.||.+.||+.|+. .++++|+|+++.+++++.++++||+++++++.+
T Consensus 466 ~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 466 DLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred HHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999985 467899999988999999999999999988764
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=389.52 Aligned_cols=359 Identities=21% Similarity=0.371 Sum_probs=289.6
Q ss_pred cccccccccccc-----ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 38 GGVIQLGLAENQ-----LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 38 ~~~i~l~~~~n~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
.++|+|+.+... .+++.+.+.+.+.-.. .....|++..|.+++|+++|++++...+ +.++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~ 97 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS-----------GKFNGYAPSVGALAAREAVAEYLSSDLP--GKLTAD 97 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCHH
Confidence 467999988752 3445555555442110 1234798889999999999999986555 456789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++|+.+++.+++++||.|+++.|+|+.+...+... |++++.++++..++|.+|++++++++.+ ++
T Consensus 98 ~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~ 170 (403)
T TIGR01265 98 DVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFS-GLEVRLYDLLPEKDWEIDLDGLEALADE------KT 170 (403)
T ss_pred HEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEecCCcccCCccCHHHHHHHhCc------Cc
Confidence 9999999999999999999999999999999999998887776 9999999887666789999999987753 68
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
+++++++||||||.+++.+++++|+++|+++|++||+||+|+++.|++..+.++..+. ...++++++||||.|++
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-----~~~~vi~~~S~SK~~~~ 245 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFA-----SIVPVLSLGGISKRWVV 245 (403)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhc-----cCCcEEEEeecccccCC
Confidence 8999999999999999999999999999999999999999999888776666666553 23569999999999999
Q ss_pred CCceEEEEEeCC--HH----HHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 273 PGFRVGIVYSFN--DT----VVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 273 ~G~RvG~i~~~~--~~----i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
||+|+||+++++ +. +...+.+.. ....++.++|.++..+|.+.. +.++++.+++++++++.+.+.|+.. |
T Consensus 246 pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~ 323 (403)
T TIGR01265 246 PGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEELKDIPG 323 (403)
T ss_pred CcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999853 22 222233332 234478899999999997632 5678888999999999999999987 7
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+..+++|+|+|++++..... ...+..+++..+++++||.|.||+.|+ .++|+||||+. +++++++++++|++++
T Consensus 324 ~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~iRis~~~-~~~~l~~~l~~l~~~~ 399 (403)
T TIGR01265 324 LVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFG--LPNWVRITITV-PESMLEEACSRIKEFC 399 (403)
T ss_pred ceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEecC-CHHHHHHHHHHHHHHH
Confidence 8777789999999999753211 111234677888888899999999996 47899999995 7889999999999999
Q ss_pred hhh
Q 011801 425 QQD 427 (477)
Q Consensus 425 ~~~ 427 (477)
+++
T Consensus 400 ~~~ 402 (403)
T TIGR01265 400 ERH 402 (403)
T ss_pred Hhc
Confidence 653
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=389.33 Aligned_cols=357 Identities=20% Similarity=0.320 Sum_probs=284.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+..... ++.+.+.+.+.... .....|++..|.++||+++++|+++.+| +.++++ +|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~i~ 95 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQR-----------PDTHGYSTSRGIPRLRRAISRWYQDRYD--VDIDPESEAI 95 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46788887654332 23233333321110 1346799999999999999999987766 557777 799
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++.+++..+++|||+|++++|+|+.+...++.. |++++.++++.++. +.++++++++.. ..++++|
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~---~~~~l~~~l~~~---~~~~~~v 168 (395)
T PRK08175 96 VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIA-GAQVRSVPLVEGVD---FFNELERAIRES---YPKPKMM 168 (395)
T ss_pred EccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCeEEEEecccCCC---cHHHHHHHHhhc---cCCceEE
Confidence 9999999999999999999999999999999988877766 99999999876544 367888777532 3478999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++....++..+.. ..+++++++||||.||+||+
T Consensus 169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~pGl 244 (395)
T PRK08175 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG----AKDVAVEFFTLSKSYNMAGW 244 (395)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC----cccCEEEEeeccccccCcch
Confidence 99999999999999999999999999999999999999988886654455544321 24678899999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+.+... ...+++++|.++..+|.+. +.++++.++.++++++.+.+.|++.|+.+..+.+|
T Consensus 245 RiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g 320 (395)
T PRK08175 245 RIGFMVGNPE-LVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKAS 320 (395)
T ss_pred hheeeeCCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEE
Confidence 9999998654 4444444432 2346677899888888653 45678889999999999999999999888888899
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|++++..... .++.+++..+++++||.|.||+.|+..+++++|++++ .+++.+.+++++|++++++
T Consensus 321 ~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 321 MYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred EEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHh
Confidence 9999999864321 1234678888888899999999998666789999998 4899999999999999974
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=386.77 Aligned_cols=344 Identities=22% Similarity=0.299 Sum_probs=283.5
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
..+++++|+++|.... ++.++.+..... .....|++..|.++||++||++++. +++++|
T Consensus 24 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~~ia~~~~~-------~~~~~v 83 (373)
T PRK07324 24 AESCIDSLTLEELLALAGKNPEAFYQELG-------------QKKLTYGWIEGSPEFKEAVASLYQN-------VKPENI 83 (373)
T ss_pred ccCCCCCCcHHHHHhccCcchHHHHHHHh-------------cCCccCCCCCCCHHHHHHHHHHhcC-------CChhhE
Confidence 3567999999987554 233432322211 1234799999999999999999862 578999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++|+.+++.+++++||.|+++.|+|+.+...++.. |++++.++++.+++|.+|++++++++.+ ++|+
T Consensus 84 i~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~kl 156 (373)
T PRK07324 84 LQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLVRP------NTKL 156 (373)
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhCCC------CCcE
Confidence 99999999999999999999999999999999998888776 9999999998777899999999887643 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++||||||.+++.+++++|+++|+++|++||+||+|.++.++.. +.++.+. .+++++++||||.+|+||
T Consensus 157 i~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~~-------~~~~I~~~s~SK~~~~~G 228 (373)
T PRK07324 157 ICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIADL-------YEKGISTNSMSKTYSLPG 228 (373)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhhc-------cCCEEEEecchhhcCCcc
Confidence 99999999999999999999999999999999999999998877543 4454432 357899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN 351 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~ 351 (477)
+|+||++++ +.+.+.+++...+ ..++.++|.++..+|.+. +.++++.++.++++++.+.+.|++. ++.+..|+
T Consensus 229 ~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~ 304 (373)
T PRK07324 229 IRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPK 304 (373)
T ss_pred ceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCC
Confidence 999999995 5555555554432 346778999988888753 4567888889999999999999887 77888899
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|+|+.++... +..+++.++++++||.|.||+.|+. ++|+||+++. +++.+++++++|+++++++
T Consensus 305 gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 305 AVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSEFLREF 371 (373)
T ss_pred ceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 9999898887421 2236888888888999999999974 6799999986 7899999999999999764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=386.23 Aligned_cols=352 Identities=21% Similarity=0.303 Sum_probs=285.0
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.+.|+|+.++++.. .+.+.+.+.+.-. -.....|++..|.++||+++|+++++.+| ..+++++|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 95 (386)
T PRK07550 29 GPLIDLSQAVPGYPPPPELLRALAEAAA-----------DPAAHLYGPVEGLPELREAYAAHYSRLYG--AAISPEQVHI 95 (386)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh-----------CcCCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEE
Confidence 35799999998774 3455555544210 01345798888999999999999998776 4577899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||+|+++.|+|+.+...++.. |++++++++++++++.+|.+++++++++ ++++|+
T Consensus 96 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 168 (386)
T PRK07550 96 TSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDML-GIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIA 168 (386)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEEE
Confidence 999999999999999999999999999999998888876 9999999998667888999999998864 788999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++||||||.+++.+++++|+++|+++|++||+||+|+++.+......+...... ..+++++++||||.+|+||+|
T Consensus 169 ~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~G~R 244 (386)
T PRK07550 169 LVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD----WDDTLVHLYSFSKSYALTGHR 244 (386)
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCC----ccccEEEEecchhhccCcccc
Confidence 9999999999999999999999999999999999999987554322223222111 246789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 277 VGIVYSFNDTVVNCGRKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
+||++++++.+....+.... ...++.++|.++..++++ + ++++++.++.++++++.+.+.|.+. ++.+ .+.+|+
T Consensus 245 iG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~ 320 (386)
T PRK07550 245 VGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN--L-ADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGAY 320 (386)
T ss_pred eEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCceE
Confidence 99999976554444333322 234678999999999976 2 5677888889999999999999886 6654 356889
Q ss_pred EEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 355 ~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
|+|++++. ..+ ..+++..+++++||.|.||+.|+...++++||+++..+++++++++++|++|
T Consensus 321 ~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 321 FAYVRHPFPDRP------SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred EEEecCCCCCCC------HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 99999874 222 2357788888889999999999765578999999977899999999999886
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=387.91 Aligned_cols=354 Identities=21% Similarity=0.367 Sum_probs=284.1
Q ss_pred Cccccccccccc---cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAEN---QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~n---~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
+.++|+|+.+.. .+ +++.+.+.+.+.-. .....|++..|.++||+++|+|+++.+| +.++++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~ 94 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIK------------EGHNYYGPSEGLPELREAIVKREKRKNG--VDITPD 94 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCChh
Confidence 346899999886 34 44555555544210 1134688888999999999999987766 567899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEE-eccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV-HCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v-~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
+|++|+|+++|+.+++.+++++||.|++++|+|+.+...++.. |.+++.+ +.+ .++|.+|.+++++++.+ +
T Consensus 95 ~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~v~~~~~~-~~~~~~d~~~l~~~~~~------~ 166 (398)
T PRK08363 95 DVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFY-GGVPVEYRTIE-EEGWQPDIDDIRKKITE------K 166 (398)
T ss_pred hEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEecccc-ccCCcCCHHHHHhhCCc------c
Confidence 9999999999999999999999999999999999999888876 9988888 444 35788999999888754 7
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
+++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.|++. +.++..+. ...++++++||||.|+
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~-----~~~~vi~~~SfSK~~~ 240 (398)
T PRK08363 167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLT-----KDVPVIVMNGLSKVYF 240 (398)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcC-----cCCcEEEEecchhccC
Confidence 89999999999999999999999999999999999999999998877653 34544442 2357999999999999
Q ss_pred CCCceEEEEEe--CCHHHHHHHHHhc----ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 272 LPGFRVGIVYS--FNDTVVNCGRKMS----SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 272 ~~G~RvG~i~~--~~~~i~~~~~~~~----~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
+||+|+||+++ +++.+......+. ..+.++.++|.++..+|.+. ++++++.+++++++++.+.+.|.+. +
T Consensus 241 ~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~L~~~~~ 317 (398)
T PRK08363 241 ATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKRLNEIPG 317 (398)
T ss_pred CccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999997 4333322222221 12347889999999999752 4567788889999999999999887 7
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+..+.+|+|+|++++... ...+.+++..++.++||.|.||+.|+..+++|+||||+ .+++++++++++|++++
T Consensus 318 ~~~~~p~g~~~~~~~l~~~~----~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l~~l~~~~ 392 (398)
T PRK08363 318 ISTTKPQGAFYIFPRIEEGP----WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-PPVEILEEAMDRFEEFM 392 (398)
T ss_pred CEecCCCeEEEEEEEeccCC----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 88888999999999988521 01123566777788899999999997666789999997 47899999999999998
Q ss_pred hh
Q 011801 425 QQ 426 (477)
Q Consensus 425 ~~ 426 (477)
++
T Consensus 393 ~~ 394 (398)
T PRK08363 393 RE 394 (398)
T ss_pred HH
Confidence 76
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=390.87 Aligned_cols=349 Identities=19% Similarity=0.296 Sum_probs=273.0
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.++++.+ ++.+.+.+.+.-... ..-.....|++..|.++||+++|+++.+. .+++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-----~~~~d~I~ 99 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDEL-------ASEETFRGYGPEQGYPFLREAIAENDYRG-----RIDPEEIF 99 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcc-------cccccccCCCCCCCCHHHHHHHHHHHHhc-----CCCHHHEE
Confidence 356899999998874 454555544421100 00012356888889999999999986431 26899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCc-----------EEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGV-----------QIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~-----------~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+|+|+++++.+++ .++.+||.|++++|+|+.|...++.. |+ ++++++++..++|.++.++
T Consensus 100 it~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------- 170 (402)
T TIGR03542 100 ISDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMA-GRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------- 170 (402)
T ss_pred ECCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCccccccccccceEEEeecchhhCCCCCccc-------
Confidence 9999999999875 55689999999999999999888876 99 9999998765667766422
Q ss_pred HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEe
Q 011801 185 AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~ 264 (477)
..++++|+++|||||||++++.+++++|+++|++++++||+||+|.++.+++....++..+.. ..+++++++
T Consensus 171 ----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~----~~~~vi~~~ 242 (402)
T TIGR03542 171 ----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG----AKECAIEFR 242 (402)
T ss_pred ----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC----CcccEEEEe
Confidence 127899999999999999999999999999999999999999999988765533344444321 246789999
Q ss_pred cCCcccCCCCceEEEEEeCCHHH-------HHHH-HHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 265 SLSKDMGLPGFRVGIVYSFNDTV-------VNCG-RKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~~~~~i-------~~~~-~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
||||.||+||+|+||++++++.+ .... .+. ..+..++.++|.++..++.+..+ .++.+.++.++++++.
T Consensus 243 SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 320 (402)
T TIGR03542 243 SFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENARI 320 (402)
T ss_pred cCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHH
Confidence 99999999999999999976644 1222 222 33445788999999999987654 2455667888999999
Q ss_pred HHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHH
Q 011801 336 FTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQV 415 (477)
Q Consensus 336 l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~ 415 (477)
+.+.|++.|+++.++.+|+|+|++++...+ ..+++..++++.||.|.||+.|+..+++|+||+++. +++++++
T Consensus 321 ~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~ 393 (402)
T TIGR03542 321 LRKALEAAGFKVYGGEHAPYLWVKTPEGIS------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVE 393 (402)
T ss_pred HHHHHHhcCceecCCCceeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHH
Confidence 999999989888888889999999985322 225788888888999999999977667899999875 8999999
Q ss_pred HHHHHHHH
Q 011801 416 ALNRIAAF 423 (477)
Q Consensus 416 ~l~~l~~~ 423 (477)
++++|+++
T Consensus 394 ~l~~l~~~ 401 (402)
T TIGR03542 394 ACERIKEA 401 (402)
T ss_pred HHHHHHhh
Confidence 99999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=386.00 Aligned_cols=353 Identities=24% Similarity=0.441 Sum_probs=287.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+.. .....|++..|.+++|+++|+++. .+| +.+++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~g~~~lr~~ia~~~~-~~~--~~~~~~~i~~ 93 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYD-------------EEVLAYSHSQGIPELREAFAKYYK-KWG--IDVEPDEILI 93 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHh-------------cCCcCcCCCCCCHHHHHHHHHHHH-HhC--CCCCcceEEE
Confidence 36899999988764 455566555421 134579999999999999999998 344 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCccc-CHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKI-TREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i-~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++..++++||.|++++|+|+.+...++.. |+++++++++.+++|.. +++++++++++ ++++|
T Consensus 94 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~~~~~~l~~~~~~------~~~~v 166 (397)
T PRK07568 94 TNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSA-GVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAI 166 (397)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHc-CCEEEEeecCcccCCCCCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999988877766 99999999875556664 57888887753 78899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++||+||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. ..+++++++||||.+|+||+
T Consensus 167 ~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~----~~~~~i~~~S~SK~~~~~G~ 242 (397)
T PRK07568 167 LISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEG----LEDRVIIIDSVSKRYSACGA 242 (397)
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCC----CcCCEEEEecchhhccCCCc
Confidence 99999999999999999999999999999999999999998777655566555432 35789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
|+||++++++.+...+.+. ...+.++.+.|.++..+|++. +.++++.++.++++++.+.+.|++. |+.+..+.+|
T Consensus 243 R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~ 319 (397)
T PRK07568 243 RIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGA 319 (397)
T ss_pred ceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcc
Confidence 9999999765555544332 223457889999999999764 3567888889999999999999887 7788888999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVND-----VKLNVSPGSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~-----~gI~v~pg~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++.. ...++.+.++++ .||.+.||+.|+.. +++++||+|+. +++++++++++|+++++
T Consensus 320 ~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~~l~~~l~ 391 (397)
T PRK07568 320 FYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAMEILKEALE 391 (397)
T ss_pred eEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence 9999999742 122566667654 69999999998532 35799999984 78999999999999997
Q ss_pred hhh
Q 011801 426 QDK 428 (477)
Q Consensus 426 ~~~ 428 (477)
++.
T Consensus 392 ~~~ 394 (397)
T PRK07568 392 KYN 394 (397)
T ss_pred Hhh
Confidence 643
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=359.15 Aligned_cols=355 Identities=20% Similarity=0.320 Sum_probs=306.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|-|-+++...+ ++.+.+++++.-+ ....+|+ .+..++.++|++|+.++++ ..++++.|++
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvd------------hGvfGY~--~~~~~~~~ai~~w~~~r~~--~~i~~e~i~~ 88 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVD------------HGVFGYP--YGSDELYAAIAHWFKQRHQ--WEIKPEWIVF 88 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHh------------cCCCCCC--CCCHHHHHHHHHHHHHhcC--CCCCcceEEE
Confidence 46888888887764 5667777776422 1345666 4668899999999999988 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
++|..-++..+++.|.+|||.|++.+|.|++|....+.. |.++++.|+- .++.|.+|.++||+++.+. ++|++
T Consensus 89 ~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n-~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~-----~vkl~ 162 (388)
T COG1168 89 VPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLN-GRKVIENPLVEDDGRYEIDFDALEKAFVDE-----RVKLF 162 (388)
T ss_pred cCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhc-CcEEEeccccccCCcEEecHHHHHHHHhcC-----CccEE
Confidence 999999999999999999999999999999999999887 9999999986 5577999999999999864 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++||||||||++++++||.+|.++|.+||+.||+||+++++++.+..+.+.+.+.+. ..++.+.+.|.||+|+++|+
T Consensus 163 iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~---~a~~~it~~saSKtFNlaGL 239 (388)
T COG1168 163 ILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSER---FADNSITLTSASKTFNLAGL 239 (388)
T ss_pred EEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChh---hhcceEEEeeccccccchhh
Confidence 999999999999999999999999999999999999999999999777777766442 35788999999999999999
Q ss_pred eEEEEEeCCHHHHHH-HHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 276 RVGIVYSFNDTVVNC-GRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 276 RvG~i~~~~~~i~~~-~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
.+++++.+++.+... .+++ .....+|.++..+..++..++ +.|+.+..+.++.+++++.+.|.+. ++++..|
T Consensus 240 ~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p 316 (388)
T COG1168 240 KCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEP 316 (388)
T ss_pred hheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecC
Confidence 999999999887443 3333 334557888888888888877 4679999999999999999999987 8999999
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|.+.+|+|+++..-. +.++.+.++++.+|.+.+|..|+..+.|++|+++++ +.+.++++++||+..+++
T Consensus 317 ~gTYL~WLD~r~l~l~-----d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~al~~ 386 (388)
T COG1168 317 QGTYLAWLDCRELGLD-----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRALKK 386 (388)
T ss_pred CCceeeeeeccccCCC-----hHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHHHhc
Confidence 9999999999975332 125778899999999999999999999999999996 999999999999998875
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-47 Score=384.97 Aligned_cols=354 Identities=23% Similarity=0.364 Sum_probs=283.5
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+....+. +.+.+.+.+.- ......|++..|.++||+++++++.+.+| +.++++ +|++
T Consensus 25 ~~i~l~~g~p~~~~~~~~~~~~~~~~------------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~~ 90 (387)
T PRK07777 25 GAVNLGQGFPDEDGPPEMLEAAQEAI------------AGGVNQYPPGPGIPELRAAIAAQRRRRYG--LEYDPDTEVLV 90 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHH------------hcCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 67999887644322 22233332210 01235799989999999999999987776 446676 7999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.+++++||.|+++.|+|+.+...++.. |.+++++++++. ++|.+|++++++++.+ ++++|
T Consensus 91 t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 163 (387)
T PRK07777 91 TVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMA-GAHRVPVPLVPDGRGFALDLDALRAAVTP------RTRAL 163 (387)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHC-CCEEEEeecCCccCCCcCCHHHHHHhcCc------ccEEE
Confidence 999999999999999999999999999999998888877 999999998765 4788999999988754 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|+++++++|+||+|.++.|.+..+.++..+.. ..+++++++||||.||+||+
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~Gl 239 (387)
T PRK07777 164 IVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG----MRERTVTISSAAKTFNVTGW 239 (387)
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCC----CcCcEEEEeechhhccCcCc
Confidence 99999999999999999999999999999999999999988886655555554321 24689999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++. .+.+..... .+.++++.|.++..++.+. +.++++.++.++++++.+.+.|++.|+++.++++|
T Consensus 240 RiG~~~~~~~l-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~ 315 (387)
T PRK07777 240 KIGWACGPAPL-IAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGT 315 (387)
T ss_pred eeEEEecCHHH-HHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcc
Confidence 99999996654 443333322 2346778898888888754 34677888899999999999999999998889999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|++++.... ....++++.+++++||.|.||+.|+.. .+++|||+|+. +++++++++++|++++.+
T Consensus 316 ~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~~~~~ 386 (387)
T PRK07777 316 YFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRALRGR 386 (387)
T ss_pred eEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHHHhcC
Confidence 999999863111 122468888888889999999998642 25699999986 899999999999988753
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=380.68 Aligned_cols=332 Identities=20% Similarity=0.345 Sum_probs=272.1
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.+++|+.++|+.+ ++.+.+.+.+.. ..+..|++. +.++||+++|+|++ +++++|++|
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~Y~~~-~~~~lr~~ia~~~~--------~~~~~i~it 77 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENL-------------DKLVEYPDP-DYLELRKRIASFEQ--------LDLENVILG 77 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhhcCCCc-cHHHHHHHHHHHhC--------CChhhEEEC
Confidence 3699999999875 355555555421 235679875 68999999999985 689999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++..+++++ .+ +.|++++|+|+.|...++.. |+++++++++.+++|.+| +++.+.+.+ ++++|++
T Consensus 78 ~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~ 147 (354)
T PRK06358 78 NGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAF-DAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFL 147 (354)
T ss_pred CCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHHHc-CCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEE
Confidence 99999999999987 44 68999999999999888766 999999999876788999 666555432 6889999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
+|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. .+...... ..+++++++||||.+|+||+|+
T Consensus 148 ~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~----~~~~vi~~~S~SK~~gl~G~Ri 222 (354)
T PRK06358 148 CNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET-ISMINYLE----NFKNLIIIRAFTKFFAIPGLRL 222 (354)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccc-hhHHHhcc----CCCCEEEEEechhhccCcchhh
Confidence 999999999999999999999999999999999999988776543 33333333 4578999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFF 356 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~ 356 (477)
||++++++.+...+.+....+.++.++|.++..+|++.++ +++.++.++++++.+.+.|++. |+.+.++.+ .|+
T Consensus 223 G~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g-~f~ 297 (354)
T PRK06358 223 GYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKEY----IKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSV-NFI 297 (354)
T ss_pred eeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcc-eEE
Confidence 9999876666666655555566899999999999987543 6777788899999999999887 777777765 599
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|++++.. .++++.+++ +||.|.||+.|+..+++|+||+++ ++++++++++.|++++
T Consensus 298 ~~~~~~~---------~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 298 FFKLEKP---------IDLRKELLK-KGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred EEEcCch---------HHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 9998742 257777775 599999999996555789999998 7899999999999876
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=390.86 Aligned_cols=324 Identities=26% Similarity=0.436 Sum_probs=279.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
...|.+..|.++||++|++++...+| +.+++++|++|+|+++|++++++.+++|||+|++++|+|.+....++.. |+
T Consensus 125 ~~~y~~~~G~~~LR~~ia~~l~~~~g--~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~-g~ 201 (459)
T COG1167 125 ALQYGPTAGLPELREAIAAYLLARRG--ISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEAL-GA 201 (459)
T ss_pred hhcCCCCCCcHHHHHHHHHHHHHhcC--CccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHc-CC
Confidence 45788889999999999999997777 7788999999999999999999999999999999999999999999987 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT-NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~-nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
++++||+|.+ ++|+++|++++++. ++|+++++ +-+||||.++|.++.++|+++|++|+++||+||+|+++.
T Consensus 202 ~~~~vp~d~~---G~~~e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~ 273 (459)
T COG1167 202 RVIPVPVDED---GIDPEALEEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELR 273 (459)
T ss_pred cEEecCCCCC---CCCHHHHHHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhh
Confidence 9999999854 48999999999864 78876554 347999999999999999999999999999999999999
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH-HhcccCCCchHHHHHHHHhcCChh
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR-KMSSFGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~-~~~~~~~vs~~~q~~~~~~L~~~~ 316 (477)
|++.+..++..+. ..++|++++||||.+. ||+|+||++++++.+..... +......++.++|.+++.++.++.
T Consensus 274 ~~~~p~~~l~~ld-----~~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~ 347 (459)
T COG1167 274 YDGPPPPPLKALD-----APGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGH 347 (459)
T ss_pred cCCCCCCChHhhC-----CCCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC
Confidence 9877666666653 4689999999999996 99999999997765555443 333344588899999999999777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC-CCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP-GSS 392 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p-g~~ 392 (477)
| ++++++.++.+++|++.+.+.|++. ++.+..+.+|+|+|++++...+. .++...+++ .||.+.| |..
T Consensus 348 ~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~------~~l~~~a~~-~gv~i~~~g~~ 419 (459)
T COG1167 348 Y-DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDA------RELLAAALE-KGVVVTPLGSA 419 (459)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCH------HHHHHHHHH-CCCEEEcCCcc
Confidence 7 9999999999999999999999987 36788899999999999976442 346666664 4999999 888
Q ss_pred CCCCC--CCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 393 FQCTE--PGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 393 f~~~~--~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
|.... .++||++|+..+++++++++++|.+.+++.
T Consensus 420 f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~ 456 (459)
T COG1167 420 FSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREA 456 (459)
T ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 87654 458999999999999999999999999764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=371.79 Aligned_cols=354 Identities=21% Similarity=0.356 Sum_probs=290.0
Q ss_pred ccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChH
Q 011801 43 LGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT 121 (477)
Q Consensus 43 l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t 121 (477)
||.+....+ ++.+.+.+++..+.. ....|....|+++|++++++.+.+.+|.- ....++|++|+|+.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~-----------~~~qYt~~~G~p~L~~aL~k~~se~~~~~-~~~~~eVlVT~GA~ 103 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEP-----------STNQYTRGYGLPQLRKALAKAYSEFYGGL-LDPDDEVLVTAGAN 103 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccc-----------hhccccccCCchHHHHHHHHHHHHHhccc-cCCcccEEEecCch
Confidence 777766554 566777776643211 24578888899999999999999866632 22345799999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc------CCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 122 GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD------ISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 122 ~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~------~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+++..++..++++||.|++.+|+|+.|....... |...+.++.. .+++|.+|.+.++.++.. ++|+|
T Consensus 104 ~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~ma-G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~I 176 (420)
T KOG0257|consen 104 EAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMA-GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAI 176 (420)
T ss_pred HHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhc-CCcceeeccccccccccCccccCChHHHHhhccC------CccEE
Confidence 9999999999999999999999999999999987 9999999988 678899999999999975 99999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++|+||||||.++++++|++|+++|++||+++|.||+|.-++|++..+.+++.+.. .+++++-++|+||+||+.||
T Consensus 177 i~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPg----m~ertitvgS~gKtf~~TGW 252 (420)
T KOG0257|consen 177 ILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPG----MYERTITVGSFGKTFGVTGW 252 (420)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCc----hhheEEEeccccceeeeeee
Confidence 99999999999999999999999999999999999999999999887888777632 67999999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc-c-cCCCchHHHHHHHHhcCChhhH-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 276 RVGIVYSFNDTVVNCGRKMS-S-FGLVSSQTQYLLASMLSDDEFV-----DNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~-~-~~~vs~~~q~~~~~~L~~~~~~-----~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
|+||+++ ++.+........ . ...++++.|.+.+..+..+.-. ..++.+..+.++++|+.|.+.|+++|+++.
T Consensus 253 rlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~ 331 (420)
T KOG0257|consen 253 RLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVT 331 (420)
T ss_pred eeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999 555555444332 2 2347788888877777654310 134566889999999999999999999999
Q ss_pred cCCceEEEEeeccchhhccCch------HHHHHHHHHHHhcCeEEeCCCCCCCCC-----CCEEEEEeccCCHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLE------GEIALWRTIVNDVKLNVSPGSSFQCTE-----PGWFRVCFANMDDDTLQVAL 417 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~------~e~~l~~~ll~~~gI~v~pg~~f~~~~-----~~~~Rl~~~~~~~e~l~~~l 417 (477)
.+++++|+|++++..-+...++ .+..+.+.++++.|+.+.|++.|+..+ .+.+|+|+.. +++.++.++
T Consensus 332 ~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k-~~~~L~~a~ 410 (420)
T KOG0257|consen 332 GPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK-ADETLRKAI 410 (420)
T ss_pred cCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh-hHHHHHHHH
Confidence 9999999999999211111111 233578889999999999999998643 3578999975 889999999
Q ss_pred HHHH
Q 011801 418 NRIA 421 (477)
Q Consensus 418 ~~l~ 421 (477)
++|+
T Consensus 411 e~l~ 414 (420)
T KOG0257|consen 411 ERLK 414 (420)
T ss_pred HHHh
Confidence 9998
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=374.34 Aligned_cols=330 Identities=25% Similarity=0.415 Sum_probs=279.6
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++++|+.|||++++ +.+.+.++.. ...+..||+. ...++++++|++++. .++++|+++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~-------------~~~~~rYPd~-~~~~l~~a~a~~~~~-------~~~~~V~~g 81 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAA-------------LDKLNRYPDP-DYRELRAALAEYYGV-------VDPENVLVG 81 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCC-cHHHHHHHHHHHhCC-------CCcceEEEc
Confidence 68999999999976 5566655553 1246789998 579999999999973 578999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++.|..+++.++.+||+|+++.|+|..|...++.. |++++.++..+ |.+|++++.+++.+ ++++|++
T Consensus 82 nGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~-g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i 151 (356)
T COG0079 82 NGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLA-GAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFL 151 (356)
T ss_pred CChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhc-CCeEEEecccc---cccCHHHHHHhhhc------CCCEEEE
Confidence 99999999999999999999999999999999999887 99999999863 89999999998875 7899999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
||||||||+.++.++++++++.+.+ +.+||+||+|.+ |.++ +...++. .++++++++||||+||++|+|+
T Consensus 152 ~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~e--F~~~---~~~~l~~----~~~nlivlRTfSKa~gLAGlRl 221 (356)
T COG0079 152 CNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIE--FSPE---SSLELLK----YPPNLIVLRTFSKAFGLAGLRV 221 (356)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhh--cCCc---hhhhhcc----CCCCEEEEEecHHhhhcchhce
Confidence 9999999999999999999999988 999999999998 4442 3233332 3578999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCe-EecCCceEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGIN-CLKSNAGLFF 356 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~-~~~~~~g~~~ 356 (477)
||+++ ++.+++.+++....+.+|.++|.++.++|.+.++ +++..+++.+.++++.+.|+++|+. +.++. ++|+
T Consensus 222 Gy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~----~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~-aNFv 295 (356)
T COG0079 222 GYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDADY----LEESVERIREERERLYAALKALGLFGVFPSQ-ANFV 295 (356)
T ss_pred eeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHhCCCCeecCCC-CcEE
Confidence 99888 5567777888877777999999999999999754 7788888999999999999999855 66666 5899
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+++++.. . ...+.+.+++ +||.|+..+. ....++|+||+++ ++++.++++++|++++..
T Consensus 296 lv~~~~~------~-~~~l~~~L~~-~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 296 LVRVPDA------E-AAALAEALLK-KGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLKG 354 (356)
T ss_pred EEECCCc------c-HHHHHHHHHH-CCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 9999851 1 1135555554 5999999877 5556789999999 788899999999999865
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=383.26 Aligned_cols=358 Identities=26% Similarity=0.478 Sum_probs=293.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+.+.++ ++.+.+.+++.-. .....|++..|.++||+++|+++++.+| ..+++++|++
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 96 (393)
T PRK05764 31 RDVISLGAGEPDFDTPEHIKEAAIEALD------------DGKTKYTPAAGIPELREAIAAKLKRDNG--LDYDPSQVIV 96 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 45799999988776 3555555554211 1234698889999999999999987766 4578899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+..++.+++++||.|++++|+|..+...++.. |.++++++++.+++|.+|+++++++++. ++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (393)
T PRK05764 97 TTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLA-GGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALI 169 (393)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHc-CCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEE
Confidence 999999999999999999999999999999998888876 9999999998667899999999988753 788999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++|+||||.+++.+++++|+++|+++++++|+||+|.++.|++..+.++.++..+ ..+++++++||||.+|+||+|
T Consensus 170 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~---~~~~~i~~~s~SK~~~~~G~R 246 (393)
T PRK05764 170 LNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPE---LRDRTITVNGFSKAYAMTGWR 246 (393)
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCC---CcCCEEEEecCcccccCccce
Confidence 99999999999999999999999999999999999999887766555565554221 346899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 277 VGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
+||++++++ +.+.+.... ..+.++++.|.++..+|.+. +.++.+.++.++++++.+.+.|+++ |+.+..+++|
T Consensus 247 iG~i~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~ 322 (393)
T PRK05764 247 LGYAAGPKE-LIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGA 322 (393)
T ss_pred eEEEecCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcc
Confidence 999998655 444443332 23457889999999999731 3567778888999999999999998 8888889999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++........ ...+++..+++++||.+.||+.|+. ++++|||++. +++++++++++|++++++.
T Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 323 FYVFPNVSKLLGKSIT-DSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLESL 392 (393)
T ss_pred eEEEEecccccccccC-CHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999864322111 1246778888888999999999865 7899999986 8999999999999998753
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=385.22 Aligned_cols=344 Identities=17% Similarity=0.223 Sum_probs=270.0
Q ss_pred cccccccccc--c---cc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 39 GVIQLGLAEN--Q---LC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 39 ~~i~l~~~~n--~---~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
++|+|+.+.. + .+ .+.+.+.+.+.... .....|++..|.++||++||+|+.+..+ ..++++
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~-----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~ 93 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET-----------ETTKNYLPIEGLAAYRQAVQELLFGADS--PALAAG 93 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhccc-----------ccCCCcCCCCCCHHHHHHHHHHhcCCCC--cccccC
Confidence 6799999852 1 22 24566665553211 1244799999999999999999976543 335788
Q ss_pred cE--EEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RI--VMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i--~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
+| ++|+|+++|+.++++.+ ++|||.|++++|+|+.|...++.. |++++++++...++|.+|++++++++++.
T Consensus 94 ~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--- 169 (396)
T PRK09257 94 RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAA-GLEVKTYPYYDAATKGLDFDAMLADLSQA--- 169 (396)
T ss_pred eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHc-CCcEEEEeccccccCccCHHHHHHHHHhC---
Confidence 87 99999999999998766 589999999999999999999887 99999999843346899999999988642
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC-CCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS-SPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~-~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
..+.++++++|||||||.+++.+++++|+++|++++++||+||+|.++.++ +..+.++..+.. ..+++++++|||
T Consensus 170 ~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~----~~~~vi~i~SfS 245 (396)
T PRK09257 170 PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA----AGLELLVASSFS 245 (396)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh----cCCcEEEEEEcC
Confidence 123456677999999999999999999999999999999999999987664 222345444432 346899999999
Q ss_pred cccCCCCceEEEEEe--CC-HHHH---HHHHHh--cccCCCchHHHHHHHHhcCChhh---HHHHHHHHHHHHHHHHHHH
Q 011801 268 KDMGLPGFRVGIVYS--FN-DTVV---NCGRKM--SSFGLVSSQTQYLLASMLSDDEF---VDNFLVETSKRLAKRHHNF 336 (477)
Q Consensus 268 K~~g~~G~RvG~i~~--~~-~~i~---~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~---~~~~~~~~~~~l~~r~~~l 336 (477)
|.++++|+|+||+++ ++ +.+. ..+.+. ..++.++.++|.+++.+|.++++ .++++++.+++++++++.+
T Consensus 246 K~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l 325 (396)
T PRK09257 246 KNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLL 325 (396)
T ss_pred CcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 33 3222 222221 34455688999999999998753 2577888999999999999
Q ss_pred HHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHH
Q 011801 337 TKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDT 412 (477)
Q Consensus 337 ~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~ 412 (477)
.+.|++.+ +.+..+++|+|+|++++. +++..++++.||.+.|. + |++|++.++++
T Consensus 326 ~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~~ 384 (396)
T PRK09257 326 VEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G--RINVAGLNESN 384 (396)
T ss_pred HHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--eEEEeeCCHHH
Confidence 99999875 667789999999999862 35567888899999762 2 99998789999
Q ss_pred HHHHHHHHHHHH
Q 011801 413 LQVALNRIAAFV 424 (477)
Q Consensus 413 l~~~l~~l~~~~ 424 (477)
+++++++|++++
T Consensus 385 i~~~~~~i~~~~ 396 (396)
T PRK09257 385 IDYVAEAIAAVL 396 (396)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=409.46 Aligned_cols=367 Identities=16% Similarity=0.265 Sum_probs=285.5
Q ss_pred CCCCCCCccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 31 FHPTQNPGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
|.+...+.++|+|+.|+|++++ +.+.+.+.+.. .. ..+ +.|.+++++++++|+.+.+| +..
T Consensus 690 ~~~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal-------------~~-~~~--s~g~pdlr~aLa~~la~~~G--v~~ 751 (1082)
T PLN02672 690 SVSGSQESSLIHMDVDESFLPVPSAVKASIFESF-------------VR-QNI--SESETDPRPSILQFIKSNYG--FPT 751 (1082)
T ss_pred CCcccCCCCEEEEeCCCCCCCCCHHHHHHHHHHH-------------hh-cCC--CCCChHHHHHHHHHHHHHhC--cCC
Confidence 4455556689999999999964 55666665421 01 122 34678899999999998877 445
Q ss_pred CC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 110 DP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 110 ~~-~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
++ ++|++|+|+++++..+++++++|||.|++++|+|+.|...++.. |+++++++++.+++|.+|.++|++++++.
T Consensus 752 d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~-Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~--- 827 (1082)
T PLN02672 752 DSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFL-KANFRRIPTKSSDGFKLTAKTLASTLETV--- 827 (1082)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhccC---
Confidence 54 58999999999999999999999999999999999999999987 99999999986778999999999988531
Q ss_pred CCCeeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc--ccHHHhhhhccCC--CCcEEEE
Q 011801 189 SINIKGLIITNPS-NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF--TSVAEVIQEMDCN--RDLIHII 263 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~--~s~~~~~~~~~~~--~~~viiv 263 (477)
+.+.|+++||+ ||||.+++.+++++|+++|++||++||+||+|+++.|++... .++.......+.. ..+++++
T Consensus 828 --~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL 905 (1082)
T PLN02672 828 --KKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALL 905 (1082)
T ss_pred --CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEE
Confidence 34578999997 999999999999999999999999999999999988875431 2222221110001 2379999
Q ss_pred ecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHH---HhcC--ChhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLA---SMLS--DDEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~---~~L~--~~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
+||||.+++||+|+||++++++.+.+.+.+...........|.++. .++. ++++ ..++.+.++.++++++++.+
T Consensus 906 ~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e 984 (1082)
T PLN02672 906 GGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKE 984 (1082)
T ss_pred eCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877666655544333223333444433 3332 4455 56788889999999999999
Q ss_pred HHhhCCCeEecCCceEEEEeeccchhh----ccC-------chHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc
Q 011801 339 GLEQVGINCLKSNAGLFFWMDLRHLLK----EKT-------LEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN 407 (477)
Q Consensus 339 ~L~~~gi~~~~~~~g~~~~~~l~~~~~----~~~-------~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~ 407 (477)
.|++.|+.+.++++|+|+|++++.... ... -.++.++++.++++.||.|.||+.|+. ++|+||+|+.
T Consensus 985 ~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~ 1062 (1082)
T PLN02672 985 TLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFAL 1062 (1082)
T ss_pred HHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecC
Confidence 999999999999999999998764321 000 012457899999989999999988764 7899999995
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 011801 408 MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 408 ~~~e~l~~~l~~l~~~~~ 425 (477)
+++++++++++|+++++
T Consensus 1063 -~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1063 -EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 88999999999999864
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=382.95 Aligned_cols=318 Identities=17% Similarity=0.207 Sum_probs=256.7
Q ss_pred cccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE--EeCChHHHHHHHHH---HhcCCCCeEEEcCCCccchHHHH
Q 011801 78 DIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV--MGGGATGANELIMF---CLANPGDAFLVPSPYYAAFDRDL 152 (477)
Q Consensus 78 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~--~t~G~t~al~~i~~---~l~~~Gd~vlv~~P~y~~~~~~~ 152 (477)
....|++..|.++||+++|+|+.+..+ ..+++++|+ .|.|+++|+..++. ++++|||.|++++|+|+.|...+
T Consensus 64 ~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~ 141 (404)
T PTZ00376 64 LDKEYLPIEGLQSFIEAAQKLLFGEAS--YALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIF 141 (404)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCCc--cccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH
Confidence 346799999999999999999965433 346889998 59999999998875 56899999999999999999988
Q ss_pred hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 153 SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
+.. |++++++++.++++|.+|++.+++++++. ..+.++++++|||||||.+++.+++++|+++|++|+++||+||+
T Consensus 142 ~~~-G~~~~~v~l~~~~~~~~d~~~l~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~ 217 (404)
T PTZ00376 142 KSA-GLNVKEYRYYDPKTKGLDFDGMLEDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMA 217 (404)
T ss_pred HHc-CCceeeccccCcccCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehh
Confidence 877 99999999855557899999999988642 12456778899999999999999999999999999999999999
Q ss_pred ccccccCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEE---eCCHH---HHHHHHHh--cccCCCch
Q 011801 233 YAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVY---SFNDT---VVNCGRKM--SSFGLVSS 302 (477)
Q Consensus 233 y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~---~~~~~---i~~~~~~~--~~~~~vs~ 302 (477)
|.++.|++. .+.++..+.. ..+++++++||||.||+||+|+||++ ++++. +...+.+. ..++.+++
T Consensus 218 Y~~~~~~~~~~~~~~~~~~~~----~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 293 (404)
T PTZ00376 218 YQGFASGDLDKDAYAIRLFAE----RGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPI 293 (404)
T ss_pred hcCccCCCHHHHHHHHHHHHh----cCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCch
Confidence 999877541 2234443332 34689999999999999999999984 44432 22223322 23344577
Q ss_pred HHHHHHHHhcCChhhHHH---HHHHHHHHHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHH
Q 011801 303 QTQYLLASMLSDDEFVDN---FLVETSKRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 303 ~~q~~~~~~L~~~~~~~~---~~~~~~~~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l 375 (477)
++|.++..+|.++++.+. ++++.+++++++++.+.+.|++.+ +.+..+++|+|+|++++. ++
T Consensus 294 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~-----------~~ 362 (404)
T PTZ00376 294 HGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTK-----------EQ 362 (404)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCH-----------HH
Confidence 999999999998765333 356667899999999999999875 446678999999998852 57
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++.|++++||.+.|| + ||+++.++.++++.++++|++++..
T Consensus 363 ~~~L~~~~~v~v~p~--------~--Ris~~~~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 363 VERLIEKYHIYLLDN--------G--RISVAGLTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred HHHHHHhCCEeecCC--------C--eEEEeccCHHhHHHHHHHHHHHHhc
Confidence 788999999999987 1 9999878999999999999999753
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=387.42 Aligned_cols=354 Identities=17% Similarity=0.270 Sum_probs=268.6
Q ss_pred ccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHH-HHhcccCCCCccCCC--c
Q 011801 38 GGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAK-FMGKGRGGRVTFDPD--R 113 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~-~~~~~~g~~~~~~~~--~ 113 (477)
.++|+++.++..+++ +.+.++.... . -.+|+++.|..++++++++ |+.+.++... .+++ +
T Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~-------------~--~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~-~~~~~~~ 157 (521)
T TIGR03801 94 RDIISYVIDQLGFDPDAFLYEMCDGI-------------I--GDNYPVPDRMLPHSEKIVHQYLIQEMCGNK-PPPGEFD 157 (521)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHh-------------h--cCCCCCCCCCHHHHHHHHHHHHHhhccCCC-CCCCcCe
Confidence 356888888776654 3454444331 0 1269877788888888874 6665443221 2334 8
Q ss_pred EEEeCChHHHHHHHHHH-----hcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCC-----cccCHHHHHHHH
Q 011801 114 IVMGGGATGANELIMFC-----LANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNN-----FKITREALEAAY 182 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~-----l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~-----f~i~~~~l~~~~ 182 (477)
|++|+|+++|+..++.+ +++|||.|++++|+|+.|...+... .|+++++++++..++ |.+|.+++++++
T Consensus 158 V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~ 237 (521)
T TIGR03801 158 LFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLR 237 (521)
T ss_pred EEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhc
Confidence 99999999999999887 7899999999999999999886653 378888888865433 999999998765
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCCCcccHHHhhhhccCCCCcE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~v 260 (477)
.+ ++|+|+++|||||||.+++.+++++|+++|+++ +++||+||+|..+.+ .+.|+... .++++
T Consensus 238 ~~------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~------~~~~v 302 (521)
T TIGR03801 238 DP------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAE------LPYNT 302 (521)
T ss_pred CC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhh------CCCCE
Confidence 43 899999999999999999999999999999986 999999999997643 34565444 34789
Q ss_pred EEEecCCcccCCCCceEEEEEeCCHHHHH------------HH------------------------HHhcc--cCCCch
Q 011801 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVN------------CG------------------------RKMSS--FGLVSS 302 (477)
Q Consensus 261 iiv~SlSK~~g~~G~RvG~i~~~~~~i~~------------~~------------------------~~~~~--~~~vs~ 302 (477)
++++||||.||++|+|+||++++++.+.+ .+ ++... ...+|+
T Consensus 303 I~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~ 382 (521)
T TIGR03801 303 IGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLST 382 (521)
T ss_pred EEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCc
Confidence 99999999999999999999998653311 11 11211 122455
Q ss_pred HHHH--H---HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCe--EecCCceEEEEeeccchhhc---cCc---
Q 011801 303 QTQY--L---LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGIN--CLKSNAGLFFWMDLRHLLKE---KTL--- 369 (477)
Q Consensus 303 ~~q~--~---~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~--~~~~~~g~~~~~~l~~~~~~---~~~--- 369 (477)
+.|. + +.+++... +.++++.++++++|++.+.+.| |+. +.++++|+|+|++++..... ..|
T Consensus 383 p~Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~ 456 (521)
T TIGR03801 383 PQQVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSY 456 (521)
T ss_pred HHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHH
Confidence 5555 3 44555432 4578888999999999999998 444 45688999999999863210 001
Q ss_pred ----hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 370 ----EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 370 ----~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.++.+++.+|+++.||.+.||+.|+.. ++++|||+++.+++++.++.++|+++++++.+
T Consensus 457 l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 457 LKKNYSPVDVLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HhccCCHHHHHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 134689999999999999999999863 56899999988999999999999999987653
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=380.62 Aligned_cols=326 Identities=18% Similarity=0.288 Sum_probs=264.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.|+|+++ ++.+.+.+.+.. .....|+ ..|.++||+++|++++ +++++|++
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~-------------~~~~~Yp-~~g~~~Lr~aia~~~~--------~~~~~I~v 86 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSW-------------LDHALYP-DGGATTLRQTIANKLH--------VKMEQVLC 86 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHH-------------HhcCcCC-CCCHHHHHHHHHHHhC--------CCcceEEE
Confidence 47899999999995 466666665531 1233575 4589999999999985 67999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++.+++.+++++||.|++++|+|+.|...++.. |+++++++++ ++.+|++++++++++ ++++|+
T Consensus 87 t~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~---~~~~d~~~l~~~~~~------~~~~v~ 156 (366)
T PRK01533 87 GSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIE-GCEVKEVALN---NGVYDLDEISSVVDN------DTKIVW 156 (366)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCEEEEeecC---CCCcCHHHHHHHhCc------CCcEEE
Confidence 999999999999999999999999999999999988877 9999999985 346899999988754 788999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+||||||||.+++.+++++|+++|++++ ++|+||+|.++.+... ..+....++ ..+++++++||||.||+||+|
T Consensus 157 i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~~----~~~~vi~~~SfSK~~~l~GlR 230 (366)
T PRK01533 157 ICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLLE----KHKNILVLRTFSKAYGLASFR 230 (366)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHhc----cCCCEEEEeCchHHhcChHHH
Confidence 9999999999999999999999998876 5677999997655432 223333333 357899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~ 356 (477)
+||+++++ .+.+.+.+....+.++.++|.++..+|++.++ +++.++.++++++++.+.++..|+++.+++ |+|+
T Consensus 231 iG~~i~~~-~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~-~nf~ 304 (366)
T PRK01533 231 VGYAVGHE-ELIEKLNVVRLPFNVSSLAQKAATIAFGDDEF----IEEIVRVNTEGLRQYESFCKENEIPFYQSQ-TNFI 304 (366)
T ss_pred HhHHhCCH-HHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHhCCCccCCCc-CcEE
Confidence 99999964 45555555555567999999999999988665 455566677788888888888899888775 5799
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|++++. . .++.+.++ ++||.|++ | ++++||+++ +.++++.++++|+++++.
T Consensus 305 ~~~~~~---~------~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~~ 355 (366)
T PRK01533 305 FLPVEN---G------GEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFEN 355 (366)
T ss_pred EEeCCC---H------HHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHHh
Confidence 999862 1 13555555 57999997 3 478999998 789999999999999865
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=376.50 Aligned_cols=334 Identities=18% Similarity=0.295 Sum_probs=269.0
Q ss_pred CccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|++++|++++ +.+.+.+.+.. .....|++. +.+++|++||++++ +++++|+
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~ 76 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNL-------------DCAERYPDV-EYRHLHQALARHHQ--------VPASWIL 76 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHH-------------HhcccCcCc-cHHHHHHHHHHHhC--------cChhhEE
Confidence 4568999999999854 55666655421 123468765 68999999999985 6799999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++..++.++ .+|+ +++++|+|..|...++.. |+++++++++.+++|.+| +++.+++. .++|+|
T Consensus 77 it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~-~~~~~~~~------~~~k~v 146 (356)
T PRK08056 77 AGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQV-GCEIRRYSLREADGWQLT-DAILEALT------PDLDCL 146 (356)
T ss_pred ECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHc-CCeEEEEecccccCCCcc-HHHHHhcc------CCCCEE
Confidence 9999999999999887 6776 788899999998888877 999999999766778877 34444443 278999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+.+..+.+. +. ..+++++++||||.||+||+
T Consensus 147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~---~~----~~~~~i~~~S~SK~~~~~G~ 219 (356)
T PRK08056 147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ---LA----DNPHLWVLRSLTKFYAIPGL 219 (356)
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH---hc----cCCCEEEEEechhhccCcch
Confidence 999999999999999999999999999999999999999876654333332 22 34688999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
|+||++++++.+...+++....+.++.++|.++..++++.++ +++.+++++++++.+.+.|+++ |+.+.++ +|+
T Consensus 220 RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~ 294 (356)
T PRK08056 220 RLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRAY----QQATWQWLAEEGARFYQALCALPLLTVWPG-RAN 294 (356)
T ss_pred hheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCc
Confidence 999999866556565666555666888999999999987554 5677788999999999999887 7777665 568
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|++++.. ..++++.+++ +||.|+||+.|....++|+||+++ ++++++.+++.|+++++
T Consensus 295 ~~~~~~~~~--------~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 295 YLFLRCERP--------DIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVLT 354 (356)
T ss_pred EEEEEcCCC--------hHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHHc
Confidence 999998731 1257777764 699999999996555689999998 68899999999998865
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=347.96 Aligned_cols=331 Identities=21% Similarity=0.382 Sum_probs=289.3
Q ss_pred cccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCC
Q 011801 78 DIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 78 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
....|.+..|++..|+|||+|+.+... -.+++++|++|+|.++|+++++.+|++||..||+|.|+|+-|...+... |
T Consensus 95 k~N~Yaps~G~~~AR~AVAeYl~~~l~--~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~-~ 171 (447)
T KOG0259|consen 95 KGNGYAPSVGILPARRAVAEYLNRDLP--NKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYS-G 171 (447)
T ss_pred CCCCcCCccccHHHHHHHHHHhhcCCC--CccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhc-C
Confidence 456899999999999999999886554 3478999999999999999999999999999999999999998877766 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
+++..+.+-++.+|.+|++.+|+.+.+ ++.++++.||+||+|.+++.+.|++|+++|+++++.||.||+|..++
T Consensus 172 lEVR~ydlLPe~~weIDL~~veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~v 245 (447)
T KOG0259|consen 172 LEVRYYDLLPEKDWEIDLDGVEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTV 245 (447)
T ss_pred ceeEeecccCcccceechHHHHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceee
Confidence 999999998899999999999999876 89999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH-------HHHHHHHHhccc-CCCchHHHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND-------TVVNCGRKMSSF-GLVSSQTQYLLA 309 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~-------~i~~~~~~~~~~-~~vs~~~q~~~~ 309 (477)
|++.+|.++..+.. --.|+.++|+||.|=.||||+||++..+. .+++.+.++... ...+++.|.++-
T Consensus 246 fg~~pfvpmg~fss-----iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP 320 (447)
T KOG0259|consen 246 FGDKPFVPMGKFSS-----IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALP 320 (447)
T ss_pred cCCCCccchhhccc-----cCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhH
Confidence 99999999988753 34578899999999999999999998653 223344444332 336779999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEE
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v 387 (477)
.+|+... ++|+.....-++...+...+.|++. ++. ..+|++.+|+|+++.-..- ..++++.+|+.+|.+|..+.+
T Consensus 321 ~IL~kTp--~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~-~~~~dD~dFc~kL~~Eesv~~ 397 (447)
T KOG0259|consen 321 DILEKTP--EEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLF-PDIEDDVDFCQKLAREESVIC 397 (447)
T ss_pred HHHHhCh--HHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhh-ccccccHHHHHHHhhhcceEE
Confidence 9998755 6778888999999999999999998 777 4579999999999874322 345677899999999999999
Q ss_pred eCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 388 SPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 388 ~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.||..|+. ++|+|++++ ++.+.++++.+||+.|..++.
T Consensus 398 LPG~af~~--~nw~Ri~i~-~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 398 LPGQAFGL--KNWLRIVIT-VEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred eccccccC--CCeEEEEEc-cChHHHHHHHHHHHHHHHhhh
Confidence 99999975 899999998 588999999999999998765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=372.44 Aligned_cols=333 Identities=20% Similarity=0.288 Sum_probs=257.9
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|+++ ++.+.+.+.+. +..+..|++.. .++||++||+|++ +++++|+
T Consensus 21 ~~~~i~l~~~~n~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~-~~~Lr~aia~~~~--------v~~~~I~ 78 (360)
T PRK07392 21 PDAILDFSASINPLGPPESVIAAIQSA-------------LSALRHYPDPD-YRELRLALAQHHQ--------LPPEWIL 78 (360)
T ss_pred cccEEEeCCcCCCCCCCHHHHHHHHHH-------------HHHhhcCCCcC-HHHHHHHHHHHhC--------cChhhEE
Confidence 457899999999985 45566666542 12345798764 6899999999994 6799999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc---cCHHHHHHHHHHHHHhCCCe
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK---ITREALEAAYERAQEASINI 192 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~---i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|+|+++++.+++.++. +||.|++++|+|+.|...++.. |+++++++++.++++. .+++++++.. .++
T Consensus 79 it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~ 149 (360)
T PRK07392 79 PGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALRAF-GATVKELPLPLDQPSPGLTLRLQTLPPQL-------TPN 149 (360)
T ss_pred ECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHHHc-CCeEEEEecccccCCcccccCHHHHHHhc-------cCC
Confidence 99999999999998875 7899999999999999999887 9999999997665553 3444443321 267
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++++++|||||||.+++++++.+++ +++++ +|+||+|.++.+++. ..+....+. ..+++++++||||.||+
T Consensus 150 ~~~~l~nP~NPTG~~~~~~~l~~l~---~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~----~~~~vi~i~S~SK~~~l 220 (360)
T PRK07392 150 DGLLLNNPHNPTGKLWSREAILPLL---EQFAL-VVVDEAFMDFLPPDA-EQSLIPCLA----EYPNLIILRSLTKFYSL 220 (360)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHH---HHCCE-EEEECchhhhccCcc-ccchHHHhh----cCCCEEEEEechhhhcC
Confidence 8999999999999999977766554 56775 666999998876553 234433333 34789999999999999
Q ss_pred CCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN 351 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~ 351 (477)
||+|+||++++++.+ +.+.+....+.+|.++|.++..+|++.++ .+..++.++++++.+.+.|+++ |+.+.+ .
T Consensus 221 ~GlRiG~~v~~~~~~-~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~ 294 (360)
T PRK07392 221 PGLRLGYAIAHPDRL-QRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQGLASLPGLTPLP-S 294 (360)
T ss_pred CchheeeeeCCHHHH-HHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHhCCCcEECC-C
Confidence 999999999966544 44555555566899999999999988665 4445567888899999999887 777655 6
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|+|++++. +..+++..+++++||.|.||..|+..+++||||+++. .++.+++.+.|++++.
T Consensus 295 ~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 295 AANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT--EAENQRLLEALAAILA 358 (360)
T ss_pred CCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC--HHHHHHHHHHHHHHhh
Confidence 78999998873 1236778888888999999999976567899999984 5555666666666554
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-46 Score=373.36 Aligned_cols=327 Identities=19% Similarity=0.306 Sum_probs=262.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|+++ ++.+.+.+.+.. .....|++ .|.++||+++|++++ +++++|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~I~ 86 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAA-------------ERVHSYPK-ASHADLTAALADRWD--------VSPEQVW 86 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHH-------------hhhhcCCC-CCHHHHHHHHHHHhC--------CCcceEE
Confidence 557999999999985 455666665531 13457875 588999999999985 6899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++.++++++++|||.|++++|+|+.+...+... |.+++.++++.+++|.++.+++++++. ++|+|
T Consensus 87 it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~k~i 158 (357)
T PRK14809 87 LANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYH-HGEVREYPVSKADDFEQTADTVLDAYD-------GERIV 158 (357)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEEecccCcCCCcCHHHHHHhhc-------CCcEE
Confidence 9999999999999999999999999999999887777666 999999998766678888877766542 57899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++||||||||.+++.+++++|+++|++ +++||+||+|.++.+.. +.....+ ..+++++++||||.||+||+
T Consensus 159 ~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~----~~~~~~~----~~~~vi~~~SfSK~~~~~Gl 229 (357)
T PRK14809 159 YLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP----SAVALVE----ERDDVAVLRTFSKAYGLAGL 229 (357)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc----hhHHHHh----hCCCEEEEecchhHhcCcch
Confidence 999999999999999999999999875 78999999999876532 2222222 34789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
|+||++++++. .+.+.+....+.++.++|.++..+|.+.+ ++++.++.++++++.+.+.|...++ +.+|+|
T Consensus 230 RiG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~----~~~g~f 300 (357)
T PRK14809 230 RLGYAVVPEEW-ADAYARVNTPFAASELACRAGLAALDDDE----HVERTVETARWAREYIREELDAPTW----ESAGNF 300 (357)
T ss_pred hheeeecCHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHhcCccC----CCCCCE
Confidence 99999996654 44444444445578899999999998744 4667778888899999999875432 467799
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|++++. +.++.+.+ .++||.|.||+.|+. ++||||+++ +++++++++++|+++++
T Consensus 301 ~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 301 VLAEVGD---------ASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred EEEECCC---------HHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 9998852 12466654 567999999999963 589999997 57899999999999875
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=372.92 Aligned_cols=340 Identities=21% Similarity=0.277 Sum_probs=263.4
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++++|+.|+|+++ ++.+.+.+++.-.. + .....|++ .|.++||++||+|+++.++.++.+++++|++|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it 97 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQ------G----IESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVG 97 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhh------c----ccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEc
Confidence 4799999999985 45666666652110 0 01346866 69999999999999987654577899999999
Q ss_pred CChHHHHHHHHHHhcCCCC-eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 118 GGATGANELIMFCLANPGD-AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd-~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
+|+++++..++.+++.+|| .|++++|+|+.|...++.. |++++.++++. ++|.+|+++|++++++.. ..++|+|+
T Consensus 98 ~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~~~k~i~ 173 (374)
T PRK02610 98 NGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTL-GIPVVRVGRDP-ETFEIDLAAAQSAIEQTQ--NPPVRVVF 173 (374)
T ss_pred CChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEecCCc-ccCCCCHHHHHHHHHhhc--CCCceEEE
Confidence 9999999988888877886 8999999999999988877 99999999864 468999999999886421 13789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+||||||||++++.+++++|+++| ++++||+||+|.++.+ . ..+..+ . ..+++++++||||.+|+||+|
T Consensus 174 l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~--~~~~~~-~----~~~~~ivi~SfSK~~g~~GlR 242 (374)
T PRK02610 174 VVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--T--TLVGEL-A----QHPNWVILRTFSKAFRLAAHR 242 (374)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--c--chHHHH-h----cCCCEEEEEecchhccCcccc
Confidence 999999999999999999999876 4999999999997532 1 122222 2 235788899999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~ 355 (477)
+||++++++ +.+.+.+....+.+++++|.++..+|++.+ .+++..++.++ +++.+.+.|+++ ++.+. +++|+|
T Consensus 243 iG~~v~~~~-l~~~l~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~-~r~~l~~~L~~~~~~~~~-p~~g~f 316 (374)
T PRK02610 243 VGYAIGHPE-LIAVLEKVRLPYNLPSFSQLAAQLALEHRQ---ELLAAIPEILQ-ERDRLYQALQELPQLRVW-PSAANF 316 (374)
T ss_pred eeeeecCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCHH---HHHHHHHHHHH-HHHHHHHHHHhCCCcEeC-CCcceE
Confidence 999998554 555555554445688999999999998753 34555444444 467788888876 66654 677899
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|++++...+ ..++++.+ .++||.|.++ ++++||+++ +++++++++++|++++.+
T Consensus 317 ~~~~l~~~~~------~~~~~~~l-~~~gi~v~~~-------~~~lRls~~--~~~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 317 LYLRLSQDAA------LAALHQAL-KAQGTLVRHT-------GGGLRITIG--TPEENQRTLERLQAALTQ 371 (374)
T ss_pred EEEeCCCCCC------HHHHHHHH-HHCCEEEEeC-------CCeEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 9999985321 23566665 5679999864 468999998 467799999999999865
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=368.16 Aligned_cols=315 Identities=16% Similarity=0.267 Sum_probs=250.4
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.+|+|+.|||+++. ...+..||+.+ ..+||+++|++++ +++++|++|+
T Consensus 17 ~~i~l~~Nenp~~~-----------------------~~~~~~Yp~~~-~~~lr~~ia~~~~--------~~~~~I~it~ 64 (332)
T PRK06425 17 RIIDFSANINDFMD-----------------------IGDISIYPEIS-YTDIEDQIKIYTQ--------GLKIKVLIGP 64 (332)
T ss_pred CEEEeccccCCCcC-----------------------hhhcccCcCcC-HHHHHHHHHHHhC--------CCcceEEECC
Confidence 57999999999841 12356798765 6999999999997 5789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~ 198 (477)
|+++++.+++. +++||+ |++++|+|+.|...++.. |++++++|++. +.++.+.+++ .++|+|++|
T Consensus 65 Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~~~~~~-G~~v~~vp~~~---~~~~~~~l~~---------~~~k~v~l~ 129 (332)
T PRK06425 65 GLTHFIYRLLS-YINVGN-IIIVEPNFNEYKGYAFTH-GIRISALPFNL---INNNPEILNN---------YNFDLIFIV 129 (332)
T ss_pred CHHHHHHHHHH-HhCCCc-EEEeCCChHHHHHHHHHc-CCeEEEEeCCc---ccCcHHHHhh---------cCCCEEEEe
Confidence 99999999997 467775 777799999999999887 99999999863 3455444431 178899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE
Q 011801 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278 (477)
Q Consensus 199 nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG 278 (477)
|||||||.+++.+++++|+++|++++++||+||+|.++.++.. .+...... ..+++++++||||.+|+||+|+|
T Consensus 130 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~--~~~~~~~~----~~~~vi~~~SfSK~~~l~GlRiG 203 (332)
T PRK06425 130 SPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA--EEDVLLNR----SYGNVIIGRSLTKILGIPSLRIG 203 (332)
T ss_pred CCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc--hhHHHHhc----cCCCEEEEeecHHhcCCchhhhe
Confidence 9999999999999999999999999999999999998765432 24444433 44789999999999999999999
Q ss_pred EEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEe
Q 011801 279 IVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWM 358 (477)
Q Consensus 279 ~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~ 358 (477)
|++++++ +.+.+.+....+.++..++.++. ..+. +.++++.++.++++++.+.+.|++.|+.+..+.+|+|+|+
T Consensus 204 y~v~~~~-li~~l~~~~~~~~~~~~~~~~l~----~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~ 277 (332)
T PRK06425 204 YIATDDY-NMKISRKITEPWSVCDPAIDFIR----SIDL-DYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFITF 277 (332)
T ss_pred eeecCHH-HHHHHHHcCCCCccCHHHHHHHH----Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEE
Confidence 9999655 55555555555545555443332 2222 4556777889999999999999999988765556789999
Q ss_pred eccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 359 DLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 359 ~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+++. ..++.+.+++ +||.|+||+.|+..+++|+||+++ ++++++.++++|++++
T Consensus 278 ~~~~---------~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 278 MIPD---------AHDFYSYLLK-NGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred EcCC---------HHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 9861 1256777765 599999999997656789999999 6889999999999875
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=373.13 Aligned_cols=334 Identities=21% Similarity=0.296 Sum_probs=269.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|++. ++.+.+.+.+.. .....|++..| .+||+++|++++ +++++|+
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~-------------~~~~~Y~~~~g-~~lr~~ia~~~~--------~~~~~i~ 92 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIA-------------ELLRLYPDPQG-RALREAIAARTG--------VPADRII 92 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 447899999999974 455666665421 23567999988 599999999985 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++..++.+++++||.|+++.|+|+.+...++.. |+++++++++. ++++|++++++++++ ++|+|
T Consensus 93 ~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~------~~~~v 163 (371)
T PRK05166 93 LGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMM-GARVERVTVTP--DLGFDLDALCAAVAR------APRML 163 (371)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHhhhc------CCCEE
Confidence 9999999999999999999999999999999988877776 99999999864 468899999988864 67899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|++ +++||+||+|.++.++. .+.+......+ ..+++++++||||.||+||+
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~---~~~~vi~i~SfSK~~~l~Gl 238 (371)
T PRK05166 164 MFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD-DYPSALTLLKA---RGLPWIVLRTFSKAYGLAGL 238 (371)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc-CcccHHHHHhh---cCCCEEEEeechHhhhcchh
Confidence 999999999999999999999999874 88999999999877543 23344333321 23579999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
|+||++++++.+.+.+.+....+.++.++|.++..+|.+.++ +++.++.++++++.+.+.|++.|+.+. +.+|+|
T Consensus 239 RiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~-p~~g~f 313 (371)
T PRK05166 239 RVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEEH----LAKGVALALAERERLKKELAEMGYRIA-PSRANF 313 (371)
T ss_pred heeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCcCeeC-CCcCCE
Confidence 999988867777776666555566899999888888877544 666677888899999999999898765 456789
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|++++.. ..++++.+++ +||.+.||..++ .++||||+++ +.++++.+++.|+.++
T Consensus 314 l~~~~~~~--------~~~l~~~l~~-~gi~v~p~~~~~--~~~~iRi~~~--~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 314 LFFDARRP--------ASAVAEALLR-QGVIVKPWKQPG--FETFIRVSIG--SPEENDHFVAALDKVL 369 (371)
T ss_pred EEEeCCCC--------HHHHHHHHHH-CCeEEecCCCCC--CCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 99997631 2357777775 499999997654 3789999999 5677788888777664
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=371.76 Aligned_cols=335 Identities=22% Similarity=0.358 Sum_probs=263.6
Q ss_pred CCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCC
Q 011801 35 QNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPD 112 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~ 112 (477)
.++.++|+|+.+++..+ ++.+.+.+.+.. ....|++..|.++||+++|+|+.+.+| +. ++++
T Consensus 24 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~--------------~~~~Y~~~~G~~~lr~~ia~~l~~~~~--~~~~~~~ 87 (364)
T PRK07865 24 AHPDGIVDLSVGTPVDPVPPVIQEALAAAA--------------DAPGYPTTAGTPELREAIVGWLARRRG--VTGLDPA 87 (364)
T ss_pred hcCCCEEEcCCCCCCCCCCHHHHHHHHHHH--------------hhCCCCCccCCHHHHHHHHHHHHHHcC--CCCCCcc
Confidence 44567899999865444 355566555421 124799989999999999999988766 44 7899
Q ss_pred cEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 113 RIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
+|++|+|+++++..++.++ +++||.|++++|+|+.|...++.. |++++.++. +++++. .+
T Consensus 88 ~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~---------~~~l~~---------~~ 148 (364)
T PRK07865 88 AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLA-GATVVRADS---------LTELGP---------QR 148 (364)
T ss_pred cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhc-CCEEEecCC---------hhhCCc---------cc
Confidence 9999999999999998888 799999999999999999888876 999887752 233321 27
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh-hhhccCCCCcEEEEecCCccc
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV-IQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~-~~~~~~~~~~viiv~SlSK~~ 270 (477)
+++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.++++. .+.... .. +...+++++++||||.+
T Consensus 149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~--~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEP-VSILDPRVC--GGDHTGLLAVHSLSKQS 225 (364)
T ss_pred ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCC-Ccccccccc--CCccceEEEEeechhcc
Confidence 899999999999999999999999999999999999999999987776532 222110 00 00246899999999999
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
|+||+|+||++++++.+....+.. ...+.++++.|.++..+|.+.+ ++++.++.++++++.+.+.|++.|+.+..
T Consensus 226 ~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 301 (364)
T PRK07865 226 NLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDA----HVREQRERYARRRAVLRPALEAAGFRVDH 301 (364)
T ss_pred CCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 999999999999655444333222 2234578899999999998744 46677888999999999999999988888
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
+++|+|+|++++.. ..++++.+ .++||.|.||..|+...++|+||+++. +++++++++++|+
T Consensus 302 ~~~~~~~~~~~~~~--------~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 302 SEAGLYLWATRGED--------CWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred CCccEEEEEeCCCC--------HHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 89999999987421 11344444 567999999998876567899999986 7899999999986
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=373.36 Aligned_cols=280 Identities=23% Similarity=0.402 Sum_probs=233.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhhhCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
...|++..|.++||++||+|+.+.+| +.+++++|++|+|+++++..++.+++ +|||.|++++|+|+.|...++.. |
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~-g 176 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLL-G 176 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHc-C
Confidence 56799999999999999999987766 56789999999999999999999987 79999999999999999998877 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.++++++++.+++|.+|+++|++++++....+.++|+++++|||||||.+++.+++++|+++|+++|++||+||+|.++.
T Consensus 177 ~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999999877789999999999997544444578999999999999999999999999999999999999999999998
Q ss_pred cCCC-CcccHHHhhhhcc--C-CCCcEEEEecCCccc-CCCCceEEEEEe--CCHHHHHHHHHh-cccCCCchHHHHHHH
Q 011801 238 FSSP-KFTSVAEVIQEMD--C-NRDLIHIIYSLSKDM-GLPGFRVGIVYS--FNDTVVNCGRKM-SSFGLVSSQTQYLLA 309 (477)
Q Consensus 238 ~~~~-~~~s~~~~~~~~~--~-~~~~viiv~SlSK~~-g~~G~RvG~i~~--~~~~i~~~~~~~-~~~~~vs~~~q~~~~ 309 (477)
|++. .+.|+.+++.+.+ . ..+++++++||||.| |+||+|+||+++ .++.+.+.+.+. ...+.++.++|.++.
T Consensus 257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~ 336 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMG 336 (407)
T ss_pred cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHH
Confidence 8764 5667665532211 0 135899999999998 899999999995 244454444443 234457889999999
Q ss_pred HhcCChh----hHHHH---HHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeecc
Q 011801 310 SMLSDDE----FVDNF---LVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLR 361 (477)
Q Consensus 310 ~~L~~~~----~~~~~---~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~ 361 (477)
.+|.+.+ .++.+ .++..+.+++|++.+.+.|.++ |+.|..|+||||+|++++
T Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 337 LMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 9997531 11222 3456789999999999999997 999999999999997665
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=368.39 Aligned_cols=328 Identities=20% Similarity=0.273 Sum_probs=260.9
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.|+|+++ ++.+.+.+... .....|++. +.++||++||++++ +++++|+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~--------------~~~~~Yp~~-~~~~lr~~ia~~~~--------~~~~~I~ 107 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNM--------------KFPYVYPDP-ESRRLRAALAEDSG--------LESENIL 107 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhh--------------HhhccCCCC-CHHHHHHHHHHHhC--------cChhhEE
Confidence 457899999999985 45566655431 123458765 68999999999986 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++.+ .+|.+|+++++++++. .++++|
T Consensus 108 ~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~~~~-----~~~~~v 179 (380)
T PLN03026 108 VGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVN-GAEVIKVPRT--PDFSLDVPRIVEAVET-----HKPKLL 179 (380)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHHhc-----cCCcEE
Confidence 9999999999999999999999999999999888877766 9999999975 3688999999988842 278999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||++++.+++++|++.+ ++||+||+|.++.+.. .. ...+. ..+++++++||||.||++|+
T Consensus 180 ~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~-~~---~~~~~----~~~~viv~~SfSK~~glaGl 247 (380)
T PLN03026 180 FLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE-SR---MKWVK----KYDNLIVLRTFSKRAGLAGL 247 (380)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc-ch---HHHHH----hCCCEEEEecchHhhcCccc
Confidence 9999999999999999999988753 8999999999865432 11 12222 35789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
|+||++++++ +.+.+.+....+.++.++|.++.++|.+.++ +++.++.++++++.+.+.|++++.....+.+|+|
T Consensus 248 RiGy~~~~~~-~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f 322 (380)
T PLN03026 248 RVGYGAFPLS-IIEYLWRAKQPYNVSVAAEVAACAALSNPKY----LEDVKNALVEERERLFGLLKEVPFLEPYPSDANF 322 (380)
T ss_pred cceeeecCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeE
Confidence 9999999655 4455555555566899999999999987554 6677888999999999999988633335667799
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+|++++...+ ..+++..++ ++||.|++|+.+ ..++|+|||++ +.++++.+++.|+++
T Consensus 323 ~~~~~~~~~~------~~~~~~~l~-~~gI~v~~~~~~--~~~~~lRis~~--~~~~~~~l~~al~~~ 379 (380)
T PLN03026 323 ILCRVTSGRD------AKKLKEDLA-KMGVMVRHYNSK--ELKGYIRVSVG--KPEHTDALMEALKQL 379 (380)
T ss_pred EEEECCCCCC------HHHHHHHHH-HCCeEEEECCCC--CCCCEEEEecC--CHHHHHHHHHHHHHh
Confidence 9999874221 225666666 669999998763 34679999999 577888888888754
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=366.62 Aligned_cols=344 Identities=18% Similarity=0.221 Sum_probs=266.5
Q ss_pred ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCCcEEEeCChHHHHHHHH
Q 011801 50 LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPDRIVMGGGATGANELIM 128 (477)
Q Consensus 50 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~~i~~t~G~t~al~~i~ 128 (477)
...+.+.+.+.+... .....|++..|.++||+++++++.+..+ .+. .+.++|++|+|+++++.+++
T Consensus 20 ~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~ 86 (388)
T PRK08637 20 MYLSSLQDLLNDLTP------------DEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVA 86 (388)
T ss_pred chHHHHHHHHHhhcc------------ccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHH
Confidence 455666666554211 2456899999999999999999876543 122 12368999999999999999
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC
Q 011801 129 FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208 (477)
Q Consensus 129 ~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~ 208 (477)
.++++|||.|++++|+|+.|...+....|++++++++.. +++++|+++++++++... ....++++++|||||||.++
T Consensus 87 ~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~--~~~~~~~~~~~P~NPTG~~~ 163 (388)
T PRK08637 87 DLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAY--NKGKVIVILNFPNNPTGYTP 163 (388)
T ss_pred HHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhc--cCCCEEEEEeCCCCCCCCCC
Confidence 999999999999999999999875432399999999842 235689999999887321 11445678899999999999
Q ss_pred CHHHHHHHHHHHHh-----cCeEEEecccccccccCCCCcccHH-HhhhhccCCCCcE--EEEecCCcccCCCCceEEEE
Q 011801 209 DRDTLKSLVSFIND-----KNIHLVCDEIYAATVFSSPKFTSVA-EVIQEMDCNRDLI--HIIYSLSKDMGLPGFRVGIV 280 (477)
Q Consensus 209 ~~~~l~~l~~~~~~-----~~~~lI~De~y~~~~~~~~~~~s~~-~~~~~~~~~~~~v--iiv~SlSK~~g~~G~RvG~i 280 (477)
+.+++++|+++|++ ++++||+||+|.++.|++....++. .+.+ ..+++ ++++||||.+++||+|+||+
T Consensus 164 s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~----~~~~vi~i~~~s~SK~~~~pGlRlG~~ 239 (388)
T PRK08637 164 TEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALAN----LHSNILAVKLDGATKEEFVWGFRVGFI 239 (388)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhc----ccccceEEEeccccccCCCcccceEEE
Confidence 99999999999875 8999999999999888765544432 2222 23564 44569999999999999999
Q ss_pred EeCC-----HHHHHHHHH-h-----cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CC
Q 011801 281 YSFN-----DTVVNCGRK-M-----SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GI 345 (477)
Q Consensus 281 ~~~~-----~~i~~~~~~-~-----~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi 345 (477)
+.++ +.+.+.+.+ . ...+.+|.++|.++..+|+++.+ .+++++.+..++++++.+.+.|.+. ++
T Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~ 318 (388)
T PRK08637 240 TFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAW 318 (388)
T ss_pred EEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 9753 444444332 1 23445889999999999998877 6677777888999999999888765 57
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+.++++|+|+|++++. . +..++++.+++++||.+.++ +++|+||+|+..+++++++++++|+++++
T Consensus 319 ~~~~~~~g~~~~~~l~~-~------~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 319 QAYPFNSGYFMCLKLKG-V------DAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELFDSIYKAIK 385 (388)
T ss_pred ccccccceEEEEecCCh-H------HHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHHHHHHHHHH
Confidence 78888999999999973 1 12368888887889988742 35789999998889999999999999997
Q ss_pred hh
Q 011801 426 QD 427 (477)
Q Consensus 426 ~~ 427 (477)
..
T Consensus 386 ~~ 387 (388)
T PRK08637 386 DL 387 (388)
T ss_pred hc
Confidence 53
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=378.21 Aligned_cols=373 Identities=18% Similarity=0.250 Sum_probs=269.1
Q ss_pred cchhhhhhcCCCCCCCCCCccccccccccccc-c--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHH
Q 011801 19 YFDGWKAFDRNPFHPTQNPGGVIQLGLAENQL-C--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAV 95 (477)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai 95 (477)
.|.++..+..+......+ .++|+|+.+.... + .+.+.+.++....... ....+..|++..|.++||++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Y~~~~G~~~LR~ai 83 (416)
T PRK09440 12 RHSGITQLMDDLNDGLRT-PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGK-------LTEALGNYDGPQGKDELIEAL 83 (416)
T ss_pred hhhcHHHHHHHHHHHhcC-CCceeccCCCCCccCCHHHHHHHHHHHHhcCcc-------cccccccCCCCCCCHHHHHHH
Confidence 344455544444444433 5689999775432 2 2344554443211000 002346799999999999999
Q ss_pred HHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC-----CCCeEEE-cCCCccchHHHHhhhCC----cEEEEEec
Q 011801 96 AKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN-----PGDAFLV-PSPYYAAFDRDLSWRTG----VQIVPVHC 165 (477)
Q Consensus 96 a~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~-----~Gd~vlv-~~P~y~~~~~~~~~~~g----~~~~~v~~ 165 (477)
|+|+.+.+| +.+++++|++|+|+++|+.+++.++++ +||.|++ ++|+|++|...+... | .....+++
T Consensus 84 a~~~~~~~g--~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~-~~~~~~~~~~~~~ 160 (416)
T PRK09440 84 AALLNERYG--WNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE-DLFVSYRPNIELL 160 (416)
T ss_pred HHHHHHHhC--CCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc-Cceeecccccccc
Confidence 999988777 557899999999999999999999985 6899999 799999998755422 2 21122233
Q ss_pred cCC-CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 166 DIS-NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 166 ~~~-~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
+.+ .+|.+|+++|+ +. .++++++++|||||||++++.+++++|+++|+++|++||+||+|... +....+.
T Consensus 161 ~~~~~~~~~d~~~l~--~~------~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~ 231 (416)
T PRK09440 161 PEGQFKYHVDFEHLH--ID------EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFS 231 (416)
T ss_pred cccccccCCCHHHcc--cC------CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchh
Confidence 221 14789998887 21 26789999999999999999999999999999999999999999753 2111111
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
+.... ..+++++++||||. ++||+|+||++++++ +.+.+..... ...+|.++|.++..+|.++++ .+++
T Consensus 232 ~~~~~------~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~-l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~ 302 (416)
T PRK09440 232 EATPL------WNPNIILCMSLSKL-GLPGVRCGIVIADEE-IIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLS 302 (416)
T ss_pred hcCcc------ccCCeEEEeccccc-CCCcceEEEEeCCHH-HHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHH
Confidence 11110 24789999999996 899999999999655 4444443332 234788999999999999887 4444
Q ss_pred HH-HHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 011801 323 VE-TSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE 397 (477)
Q Consensus 323 ~~-~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~ 397 (477)
.+ .++.++++++.+.+.|.+. ++.+..+++|+|+|++++... . .+.++++.+ .++||.|.||+.|+...
T Consensus 303 ~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~----~-~~~~~~~~l-~~~gV~v~pg~~F~~~~ 376 (416)
T PRK09440 303 ETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLP----I-TTEELYQRL-KARGVLVVPGHYFFPGL 376 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCC----C-CHHHHHHHH-HHCCEEEechHhhCCCC
Confidence 44 5777888888888888653 456678889999999998521 0 122566655 56799999999986421
Q ss_pred -------CCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 398 -------PGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 398 -------~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+||||||+. +++++++++++|++++++.
T Consensus 377 ~~~~~~~~~~iRis~~~-~~~~l~~~i~~l~~~~~~~ 412 (416)
T PRK09440 377 DEDWPHAHQCIRMNYVQ-DDEEIEKGIAILAEEVEKA 412 (416)
T ss_pred ccccCCcCceEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 3599999985 8999999999999999763
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=364.48 Aligned_cols=328 Identities=19% Similarity=0.262 Sum_probs=260.7
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.+.++++.++|+++++.. . ...+..|++.. .++||+++|++++ +++++|++|
T Consensus 31 ~~~~~~~~ne~~~~~~~~-----~--------------~~~~~~Y~~~~-~~~lr~~ia~~~~--------~~~~~I~~t 82 (364)
T PRK04781 31 QGDVWLNANESAWANPAD-----P--------------DASTRRYPDPQ-PPGLRSALAALYG--------CAPEQLLIG 82 (364)
T ss_pred CCCEEeeCCCCCCCCChh-----h--------------cchhccCCCCC-HHHHHHHHHHHhC--------cChHHEEEe
Confidence 367999999999865421 0 11356798775 6999999999985 678999999
Q ss_pred CChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 118 GGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+++++.+++.+++.+| |.|++++|+|+.|...++.. |.++++++++. .++|.+|++++.+++.+ .++++|
T Consensus 83 ~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----~~~~lv 156 (364)
T PRK04781 83 RGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQ-NAPLVEVPLVDGADGFHADVPAIVAAALA-----SNAKLV 156 (364)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCCCccCCCcCHHHHHHHHhc-----cCCeEE
Confidence 999999999999999999 79999999999888777766 99999999853 45788899988765532 278999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.++++++++.|+ ++++||+||+|.++.+.. +...... ..+++++++||||.||+||+
T Consensus 157 ~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~----~~~~~~~----~~~~vi~~~SfSK~~gl~Gl 227 (364)
T PRK04781 157 FLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVP----SAVGLLA----RYDNLAVLRTLSKAHALAAA 227 (364)
T ss_pred EEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc----chHHHHh----hCCCEEEEecChhhcccccc
Confidence 99999999999999999999999885 478999999999865421 2222333 45789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
|+||+++++ .+.+.+.+....+.+++++|.++..+|+++++ + +..+..+.++++++.+.+.|+++ |+....+.+|+
T Consensus 228 RvGy~v~~~-~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~-~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~ 304 (364)
T PRK04781 228 RIGSLIANA-ELIAVLRRCQAPYPVPTPCAALAEQALSAPAL-A-VTARRVAEVRAERERLHAALAQLPGVRRVYPSQGN 304 (364)
T ss_pred eeeeeeCCH-HHHHHHHhccCCCCCCHHHHHHHHHHHhcccH-H-HHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCc
Confidence 999999855 45566666665666899999999999988653 2 23445557889999999999988 66434466789
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|+|++++.. .++.+.+ .++||.|+||..|.. .++|+||+++ ++++++.+++.|+++.
T Consensus 305 f~~~~~~~~---------~~~~~~l-~~~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 305 FLLVRFDDA---------EAAFQAL-LAAGVVVRDQRAAPR-LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred EEEEEcCCH---------HHHHHHH-HHCCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 999998721 1355554 467999999987753 3679999998 6888999999998764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=368.17 Aligned_cols=328 Identities=20% Similarity=0.294 Sum_probs=264.1
Q ss_pred cccccccccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++|+|+.|+|++ +++.+.+.+.+.. ... .|.+..|.+++|+++|++++ +++++|++|
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~-------------~~~-~~~p~~g~~~lr~~ia~~~~--------~~~~~i~~t 87 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHL-------------DEL-ALYPDGYAPELRTKVAKHLG--------VDEEQLLFG 87 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-------------HHh-hcCCCCcHHHHHHHHHHHhC--------CCHHHEEEC
Confidence 679999999998 4455666665531 122 34445689999999999985 578999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++..++++++++||.|++++|+|+.|...+... |.+++.++++ ++.+|++++++++.+ +++++++
T Consensus 88 ~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~d~~~l~~~~~~------~~~~v~i 157 (359)
T PRK03158 88 AGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIE-GAEVREVPLK---DGGHDLEAMLKAIDE------QTKIVWI 157 (359)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEEecC---CCCcCHHHHHHhcCC------CCCEEEE
Confidence 99999999999999999999999999999998888777 9999999986 457899999887643 7889999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
+|||||||.+++.+++.++++.|+ +|++||+||+|.++.+.+.. .+.....+ ..+++++++||||.+|+||+|+
T Consensus 158 ~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~-~~~~~~~~----~~~~vi~~~S~SK~~g~~GlRi 231 (359)
T PRK03158 158 CNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDY-PDTLPLLE----KYENLIVLRTFSKAYGLAALRV 231 (359)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccc-ccHHHHHH----hcCCEEEEEechHhhcCcchhh
Confidence 999999999999999999998874 69999999999987665432 22222333 3478999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~ 357 (477)
||++++++. .+.+.+....+.+++++|.++..+|++.++ +++.++.++++++.+.+.|++.|+.+.++ +|+|+|
T Consensus 232 G~~v~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~~i~ 305 (359)
T PRK03158 232 GYGIASEEL-IEKLNIARPPFNTTRIAQYAAIAALEDQAF----LKECVEKNAEGLEQYYAFCKEYGLFYYPS-QTNFIF 305 (359)
T ss_pred ehhcCCHHH-HHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeeCCC-cCcEEE
Confidence 999996654 444444444456899999999999987655 45556667888888999998888877655 468999
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
++++. ...++++.+++ +||.|.||+.|+ .++|+||+++ +.++++.++++|+++
T Consensus 306 ~~~~~--------~~~~~~~~l~~-~gv~v~~g~~f~--~~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 306 VDTGR--------DANELFEALLK-KGYIVRSGAALG--FPTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred EECCC--------CHHHHHHHHHH-CCeEEeeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHh
Confidence 98852 12357777764 699999999996 3689999998 789999999999876
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=366.46 Aligned_cols=335 Identities=22% Similarity=0.365 Sum_probs=262.5
Q ss_pred CCCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCC
Q 011801 34 TQNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDP 111 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~ 111 (477)
..++..+|+|+.+++..+ ++.+.+.+.+. .....|++..|.++||+++++|+++.+| +. +++
T Consensus 17 ~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~--------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~ 80 (357)
T TIGR03539 17 ASHPDGIVDLSVGTPVDPVPPLIRAALAAA--------------ADAPGYPQTWGTPELREAIVDWLERRRG--VPGLDP 80 (357)
T ss_pred hhCCCCeEEccCCCCCCCCCHHHHHHHHHH--------------HhhCCCCcccCCHHHHHHHHHHHHHhcC--CCCCCc
Confidence 456777899999865444 34455555432 1234699999999999999999988766 44 789
Q ss_pred CcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 112 DRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
++|++|+|+++++..++..+ .++||.|++++|+|+.+...++.. |++++.++ +.+++.. .
T Consensus 81 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~---------~~~~l~~---------~ 141 (357)
T TIGR03539 81 TAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLA-GATPVAAD---------DPTELDP---------V 141 (357)
T ss_pred CeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhc-CCEEeccC---------ChhhcCc---------c
Confidence 99999999999999998887 799999999999999998888876 99988774 1222221 2
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
++++|+++||+||||.+++.+++++|+++|+++|++||+||+|.++.|+++. .+..... ..+...+++++++||||.+
T Consensus 142 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~-~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRP-VSILDPR-VCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCC-ccceecc-cCCCccccEEEEecccccc
Confidence 7889999999999999999999999999999999999999999987776532 2211100 0000246799999999999
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
|+||+|+||++++++.+ ..+.+.. ..+.++++.|.++..+|.+.. ++++.++.++++++.+.+.|++.|+.+.
T Consensus 220 ~~~G~R~G~~i~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~L~~~g~~~~ 294 (357)
T TIGR03539 220 NLAGYRAGFVAGDPALV-AELLTVRKHAGLMVPAPVQAAMVAALGDDG----HVAEQKARYAARRAQLKPALEKAGFRID 294 (357)
T ss_pred CCCceeEEEEecCHHHH-HHHHHHHhhcccCCCHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999865544 4343332 234578899999999998743 3566788899999999999999998888
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
++++|+|+|++++. ...++.+.+ .++||.|.||..|+...++|+|||++. +++++++++++|
T Consensus 295 ~p~~~~~~~~~~~~--------~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 295 HSEAGLYLWATRGE--------DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred CCCccEEEEEECCC--------CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 89999999999863 122455555 567999999998876567899999997 789999999887
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=365.17 Aligned_cols=346 Identities=25% Similarity=0.437 Sum_probs=276.4
Q ss_pred ccccccccccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
..+|+|+.+.+.+ +++.+.+.+.+..... ......|++..|.+++|+++|+++++.++ +.+++++|++
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~---------~~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~ 101 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEE---------DPGLHGYMPNAGYPEVREAIAESLNRRFG--TPLTADHIVM 101 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcC---------CcCcccCCCCCCCHHHHHHHHHHHHHHhC--CCCCcCcEEE
Confidence 3568888875444 3455555554421100 01245798889999999999999987766 4578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..++..++++||.|++++|+|+.+...++.. |++++.++++++ +|.+|++++++++++ ++++|+
T Consensus 102 t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~-g~~v~~v~~~~~-~~~~d~~~l~~~~~~------~~~~v~ 173 (394)
T PRK06836 102 TCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNH-GGKLVVVPTDTD-TFQPDLDALEAAITP------KTKAVI 173 (394)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEEecCCc-cCcCCHHHHHhhcCc------CceEEE
Confidence 999999999999999999999999999999998888766 999999998753 588999999998854 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHh------cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFIND------KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~------~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+++|+||||.+++.+++++|+++|++ ||++||+||+|.++.|++....++.. ..+++++++||||.+
T Consensus 174 ~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-------~~~~~i~~~S~SK~~ 246 (394)
T PRK06836 174 INSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK-------YYDNSIVVYSFSKSL 246 (394)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH-------ccCcEEEEecchhhc
Confidence 99999999999999999999999999 89999999999998776544333322 246899999999999
Q ss_pred CCCCceEEEEEeCCHHHH-----HHHHHh---cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011801 271 GLPGFRVGIVYSFNDTVV-----NCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ 342 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~-----~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 342 (477)
|+||+|+||++++++... ...... ..+..++++.|.++..++.+.. .++.++++++.+.+.|++
T Consensus 247 ~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~~l~~~L~~ 318 (394)
T PRK06836 247 SLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRDLLYDGLTE 318 (394)
T ss_pred cCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHHHHHHHHHh
Confidence 999999999999654321 111111 1223577889999999998742 135677888999999999
Q ss_pred CCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 343 VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 343 ~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
.|+.+..+.+|+|+|++++.. ...++++.+ .++||.|.||+.|+. ++|+||+|+ .+++++++++++|++
T Consensus 319 ~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~-~~~~~~~~~i~~l~~ 387 (394)
T PRK06836 319 LGFECVKPQGAFYLFPKSPEE-------DDVAFCEKA-KKHNLLLVPGSGFGC--PGYFRLSYC-VDTETIERSLPAFEK 387 (394)
T ss_pred CCCEeecCCceEEEEEeCCCC-------CHHHHHHHH-HhCCEEEECchhcCC--CCeEEEEec-CCHHHHHHHHHHHHH
Confidence 999988899999999988741 123566544 567999999999964 689999998 599999999999999
Q ss_pred HHhhhh
Q 011801 423 FVQQDK 428 (477)
Q Consensus 423 ~~~~~~ 428 (477)
++++|+
T Consensus 388 ~l~~~~ 393 (394)
T PRK06836 388 LAKEYK 393 (394)
T ss_pred HHHHhc
Confidence 998764
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=361.55 Aligned_cols=337 Identities=19% Similarity=0.247 Sum_probs=267.3
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
..|+|+.++|+++ ++.+.+.+++.-... ......|++ .|.++||++||+|+.+.+| +.+++++|++|
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~---------~~~~~~Y~~-~g~~~lr~aia~~~~~~~~--~~~~~~~I~it 94 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEA---------AAGLNRYPD-RDAVALRADLAAYLTAQTG--VGLTVENVWAA 94 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhh---------hhhhccCCC-CchHHHHHHHHHHhhhhcc--CCCChhhEEEC
Confidence 3599999999985 466777666531100 013457876 4889999999999988776 45789999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++..+++++++|||.|++++|+|+.|...++.. |.++++++.+ ++|.+|++++++++++. ++|+|++
T Consensus 95 ~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~~-----~~~~i~l 166 (368)
T PRK03317 95 NGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGT-HTEWVEGPRA--ADFTLDVDAAVAAIAEH-----RPDVVFL 166 (368)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhc-CCeeEEcccC--CCCCCCHHHHHHHHhcc-----CCCEEEE
Confidence 99999999999999999999999999999999888766 9999888764 46889999999988642 6789999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
+||+||||.+++.+++++|+++| +++||+||+|.++.+.+. .+...... ..+++++++||||.+|+||+|+
T Consensus 167 ~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~--~~~~~~~~----~~~~~i~~~SfSK~~g~~GlRi 237 (368)
T PRK03317 167 TSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT--PSALTLLP----EYPRLVVSRTMSKAFAFAGGRL 237 (368)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC--cCHHHHHH----hCCCEEEEEechhhhccchhhh
Confidence 99999999999999999998876 689999999998655542 23333333 3358999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~ 357 (477)
||++++++ +.+.+.+....+.+++++|.++..+|++.+. +.+..++++++++.+.+.|++.|+.+..+++++++|
T Consensus 238 G~~~~~~~-~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 312 (368)
T PRK03317 238 GYLAAAPA-VVDALRLVRLPYHLSAVTQAAARAALRHADE----LLASVAALRAERDRVVAWLRELGLRVAPSDANFVLF 312 (368)
T ss_pred hhhhCCHH-HHHHHHhcCCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEEEE
Confidence 99999554 5555554444445889999999999986432 334456678888999999999999888888988888
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+++. ..++++.+. ++||.|.++. .++|+|++++ ++++++.+++.|+++++.
T Consensus 313 ~~~~~---------~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 313 GRFAD---------RHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEENDAFLAALAEVLAT 364 (368)
T ss_pred eccCC---------HHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 76541 124566655 5699998742 2679999998 678999999999998865
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=363.91 Aligned_cols=322 Identities=18% Similarity=0.303 Sum_probs=258.5
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.+.|+|+.|||+++++.. +.. .....||+.. ..+|++++|++++ +++++|++|
T Consensus 28 ~~~~~l~~Nenp~~~~~~---~~~---------------~~~~~Yp~~~-~~~l~~~~a~~~g--------~~~~~I~~~ 80 (351)
T PRK01688 28 NGDVWLNANEYPTAVEFQ---LTQ---------------QTLNRYPECQ-PKAVIENYAAYAG--------VKPEQVLVS 80 (351)
T ss_pred CCceEecCCCCCCCCChh---hcc---------------cccccCCCCC-hHHHHHHHHHHhC--------CCHHHEEEc
Confidence 356999999999976431 111 2356798875 4899999999986 689999999
Q ss_pred CChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 118 GGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
+|+++++.+++++++++| |.|++++|+|+.|...++.. |++++.++++. +|.+|++++++++. ++++|+
T Consensus 81 ~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~-G~~~~~v~~~~--~~~~d~~~l~~~~~-------~~~lv~ 150 (351)
T PRK01688 81 RGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVEIRTVPTLD--NWQLDLPAIADNLD-------GVKVVY 150 (351)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHHhcc-------CCcEEE
Confidence 999999999999999997 99999999999999888877 99999999863 58999999988762 688999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+||||||||++++.+++++|++.|++ +.+||+||+|.++. .. .+....+. ..+++++++||||.||+||+|
T Consensus 151 l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~--~s~~~~~~----~~~n~iv~rSfSK~~glaGlR 221 (351)
T PRK01688 151 VCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFC--PQ--ASLAGWLA----EYPHLVILRTLSKAFALAGLR 221 (351)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcC--CC--CChHHHHh----hCCCEEEEecchHhhcCHHHH
Confidence 99999999999999999999999976 67899999998753 21 23334443 457899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~ 355 (477)
+||++++++ +.+.+++....+.++.++|.++..+|.+.. .+++++..+.++++++++.+.|+++ |+....+.+++|
T Consensus 222 iGy~i~~~~-~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nf 298 (351)
T PRK01688 222 CGFTLANEE-VINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNY 298 (351)
T ss_pred HhHHhCCHH-HHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcE
Confidence 999998554 555566665556688888988888888643 2346777788888999999999988 665344556789
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
+|++++. ..++.+.++ ++||.|+++..|. ..++|+||+++ ++++++.+++.|+
T Consensus 299 i~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~-~~~~~iRis~~--~~~e~~~l~~al~ 351 (351)
T PRK01688 299 ILARFTA---------SSAVFKSLW-DQGIILRDQNKQP-GLSNCLRITIG--TREECQRVIDALR 351 (351)
T ss_pred EEEEcCC---------HHHHHHHHH-HCCeEEEECCCcC-CCCCeEEEeCC--CHHHHHHHHHhhC
Confidence 9998862 124666666 5699999887663 23679999999 6899999998873
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=360.23 Aligned_cols=329 Identities=18% Similarity=0.253 Sum_probs=262.9
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i 114 (477)
+.++|+|+.++|+++ ++.+.+.+.+.-.. ..+..|++ .|.++||+++|++++ +++ ++|
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~~I 84 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAE-----------VALNRYPD-PRAAALKAALRAAMG--------VPAGADV 84 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhc-----------cccccCCC-CCHHHHHHHHHHHhC--------cCCCCcE
Confidence 467999999999985 45666666553110 13467887 578999999999996 233 589
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++++..++.+++++||+|++++|+|+.|...++.. |++++++++++ +|.+|++++++++.+. ++++
T Consensus 85 ~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~--~~~~d~~~l~~~~~~~-----~~~~ 156 (356)
T PRK04870 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLA-GLEFVGVPLTA--DFTLDLPAMLAAIAEH-----RPAL 156 (356)
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhhcC-----CCCE
Confidence 99999999999999999999999999999999999888877 99999999863 5889999999988642 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|+++|||||||.+++.+++++|+++| ++++|+||+|.++.+ ..+.+ .+. ..+++++++|||| +|+||
T Consensus 157 v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~--~~~~~---~~~----~~~~vi~~~S~SK-~~~~G 223 (356)
T PRK04870 157 VFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAG--DSWLP---RLA----RFPNLLVMRTVSK-LGLAG 223 (356)
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcC--cchHH---HHh----hCCCEEEEecchh-hhhHH
Confidence 99999999999999999999999988 678999999987533 22211 122 3468999999999 89999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
+|+||++++++ +.+.+.+....+.++.++|.++..++++.++ +++.+++++++++.+.+.|+++ |+.+.+ .+|
T Consensus 224 lRiG~~i~~~~-~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~ 297 (356)
T PRK04870 224 LRLGYLAGHPA-WIAELDKVRPPYNVNVLTQATALFALEHVDV----LDAQAAQLRAERTRLAAALAALPGVTVFP-SAA 297 (356)
T ss_pred HhhhhhhCCHH-HHHHHHHccCCCcCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCC
Confidence 99999999655 4444554444556888999998888876443 5667778889999999999987 887654 556
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|+|++++. ..++++. +.++||.|+||+.|+...++++||+++ +.+++++++++|++++
T Consensus 298 ~~~~~~~~~---------~~~~~~~-l~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 298 NFILVRVPD---------AAAVFDG-LKTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAAL 356 (356)
T ss_pred eEEEEECCC---------HHHHHHH-HHHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHhC
Confidence 799999872 1135544 467799999999997656789999999 6888999999998753
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=361.39 Aligned_cols=332 Identities=20% Similarity=0.261 Sum_probs=263.7
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.+|+|++|+|.+++ +.+.+.+.+.. .....|++. +.++||++||++++ +++++|++|
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~-~~~~Lr~~ia~~~~--------~~~~~I~it 90 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAA-------------AEIWKYGDP-ENHDLRHALAAHHG--------VAPENIMVG 90 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCC-ccHHHHHHHHHHhC--------CCHHHEEEc
Confidence 45799999999854 55666665531 123568876 47999999999985 678999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++..++.++++|||.|+++.|+|+.|...+... |.++++++++.+ .+|++++++.+.+. ++++|++
T Consensus 91 ~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~vp~~~~---~~~~~~l~~~~~~~-----~~~~i~l 161 (369)
T PRK08153 91 EGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGF-GGRLVTVPYRDD---REDLDALLDAARRE-----NAPLVYL 161 (369)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHc-CCeEEEeeCCCC---CCCHHHHHHHhccc-----CCcEEEE
Confidence 99999999999999999999999999999999888876 999999998532 47888887766432 7889999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
+|||||||++++.+++++|++.|+ ++++||+||+|.++.+++. +.++. . ..+++++++||||.+|+||+|+
T Consensus 162 ~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~---~----~~~~~i~~~SfSK~~g~~GlRi 232 (369)
T PRK08153 162 ANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPID---T----DDPNVIRMRTFSKAYGLAGARV 232 (369)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhh---h----cCCCEEEEecchHhccCcchhe
Confidence 999999999999999999999887 4999999999998765432 22222 1 3468999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~ 357 (477)
||++++++ +.+.+.+....+.+++++|.++..+|.++++ +++.++.++++++.+.+.|++.|+.+. +.+|+|+|
T Consensus 233 G~~v~~~~-~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~ 306 (369)
T PRK08153 233 GYAIGAPG-TIKAFDKVRNHFGMNRIAQAAALAALKDQAY----LAEVVGKIAAARDRIAAIARANGLTPL-PSATNFVA 306 (369)
T ss_pred eeeecCHH-HHHHHHHhhcCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEE
Confidence 99999655 4444444444456899999999999987554 667788889999999999998898755 56779999
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEe-CCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVS-PGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~-pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++.. . ....++++.+++ +||.++ ||.. ..++++|++++ ++++++.+++.|++++.+.
T Consensus 307 ~~~~~~---~--~~a~~l~~~l~~-~Gi~v~~p~~~---~~~~~iRis~~--~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 307 IDCGRD---G--AFARAVLDGLIA-RDIFVRMPGVA---PLDRCIRVSCG--PDEELDLFAEALPEALEAA 366 (369)
T ss_pred EECCCC---c--ccHHHHHHHHHH-CCeEEeeCCCC---CCCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 998631 1 112256677665 599995 6642 23579999998 6899999999999998653
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=357.40 Aligned_cols=324 Identities=21% Similarity=0.290 Sum_probs=257.7
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|||++++|+++ ++.+.+.+.+.. .+...|++..|.+++|+++|++++ +++++|++
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~aia~~~~--------~~~~~I~i 80 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARL-------------GDLAAYPSTEDERRARAAVAARHG--------RTPDEVLL 80 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHh-------------hHhhcCCCccchHHHHHHHHHHhC--------cChhhEEE
Confidence 47899999999885 466777776631 234679988899999999999985 57999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++.+++. + .+| .++++.|+|..+...++.. |+++++++++. +|.+|+++++ + ++++++
T Consensus 81 t~Ga~~al~~~~~-l-~~~-~viv~~P~y~~~~~~~~~~-G~~i~~v~~~~--~~~~d~~~l~----~------~~~~i~ 144 (349)
T PRK07908 81 LAGAAEGFALLAR-L-RPR-RAAVVHPSFTEPEAALRAA-GIPVHRVVLDP--PFRLDPAAVP----D------DADLVV 144 (349)
T ss_pred CCCHHHHHHHHHh-c-CCC-eEEEeCCCChHHHHHHHHc-CCEEEeeccCc--ccCcChhHhc----c------CCCEEE
Confidence 9999999999988 4 665 5778899999998888776 99999999874 3788887552 1 678999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++.++ |+ ++.++|+||+|++++.. . ..++... ..+++++++||||.||+||+|
T Consensus 145 l~np~NPTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~~-~-~~~l~~~------~~~~~i~i~S~SK~~~l~GlR 212 (349)
T PRK07908 145 IGNPTNPTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVPG-E-PESLAGD------DLPGVLVLRSLTKTWSLAGLR 212 (349)
T ss_pred EcCCCCCCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhccC-C-ccccccc------cCCCEEEEeecccccCCccce
Confidence 99999999999997766554 54 57788899999986432 2 2343332 346799999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~ 356 (477)
+||++++++ +.+.+.+....+.++++.|.++..++.+.. ..++++.+++++++++.+.+.|++.|+++.++.+|+|+
T Consensus 213 iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~ 289 (349)
T PRK07908 213 VGYALGAPD-VLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFV 289 (349)
T ss_pred eeeeecCHH-HHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEE
Confidence 999998655 444454444455678888888888887432 35677888999999999999999889888888889999
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|++++.. +.+...++++||.|.||+.|...++++||||++ ++++++++++.|++++.
T Consensus 290 ~~~~~~~----------~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 290 LVRVPDA----------ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred EEECCcH----------HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 9999841 233445567799999999996556789999997 67899999999998865
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=356.97 Aligned_cols=325 Identities=19% Similarity=0.262 Sum_probs=259.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+.. .....|++. +.++||++||++++ +++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~-~~~~Lr~aia~~~~--------v~~e~I~i 100 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSA-------------ALSGRYDLE-LEDDLRTLFAAQEG--------LPADHVMA 100 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHH-------------HHhcCCCCc-hHHHHHHHHHHHhC--------cChhhEEE
Confidence 57899999999885 566666655421 123468765 48999999999875 67999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++++. +|.+|++++++.. .++++|+
T Consensus 101 t~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~-------~~~~~v~ 170 (370)
T PRK09105 101 YAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQ-GAPVAKVPLRA--DGAHDVKAMLAAD-------PNAGLIY 170 (370)
T ss_pred cCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHhcC-------CCCCEEE
Confidence 999999999999999999999999999999998888877 99999999864 5788999887652 2678999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+||||||||.+++.++++++++.++ ++++||+||+|.++ ... .+...+.+ ..+++++++||||.||++|+|
T Consensus 171 l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f--~~~--~s~~~~~~----~~~~vi~~~SfSK~~g~~GlR 241 (370)
T PRK09105 171 ICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHF--SDA--PSVVDLVA----QRKDLIVLRTFSKLYGMAGMR 241 (370)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHh--ccC--cchHHHHh----hCCCEEEEecccHhhcCCccc
Confidence 9999999999999999999999754 59999999999764 322 24344433 357899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~ 356 (477)
+||++++++ +.+.+... ..+.++.+.|.++...|.+.+ ++++.++.++++++.+.+.|++.|+++.++++++|
T Consensus 242 iG~~v~~~~-~i~~l~~~-~~~~~~~~~~~aa~~~L~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f~- 314 (370)
T PRK09105 242 LGLAAARPD-LLAKLARF-GHNPLPVPAAAAGLASLRDPK----LVPQRRAENAAVREDTIAWLKKKGYKCTPSQANCF- 314 (370)
T ss_pred eeeeecCHH-HHHHHHhc-CCCCcCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcEE-
Confidence 999999655 44444444 344578888999888888754 46777788999999999999999998888887755
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|++++. +..++++.++++ ||.| |..|. ..++|+||+++ ++++++.+++.|++++
T Consensus 315 ~~~~~~--------~~~~l~~~L~~~-gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 315 MVDVKR--------PAKAVADAMAKQ-GVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred EEeCCC--------CHHHHHHHHHHC-CcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 677752 123677887765 9998 44453 34789999998 6788999999998876
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=360.63 Aligned_cols=315 Identities=18% Similarity=0.265 Sum_probs=245.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE-----EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI-----VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i-----~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~ 153 (477)
...|++..|.++||+++++|+.+..+ ...++++| +.++|+.+ +...+..++.|||+|++++|+|+.|...++
T Consensus 84 ~~~Y~~~~G~~~LR~aia~~~~~~~~--~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~ 160 (423)
T PLN02397 84 NKEYLPIEGLAEFNKLSAKLAYGADS--PAIKENRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFR 160 (423)
T ss_pred CCCCCCcCCCHHHHHHHHHHHcCCCC--chhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHH
Confidence 45799999999999999999965432 12223343 23333332 333444455799999999999999999998
Q ss_pred hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 154 WRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 154 ~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
.. |++++++++...++|++|++.+++.+++. ..+++++++++||||||.+++.+++++|+++|++++++||+||+|
T Consensus 161 ~~-g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y 236 (423)
T PLN02397 161 DA-GVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY 236 (423)
T ss_pred Hc-CCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence 77 99999999844446899999998887643 236788889999999999999999999999999999999999999
Q ss_pred cccccCC--CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEE--eCCHHHH----HHHHHhc--ccCCCchH
Q 011801 234 AATVFSS--PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVY--SFNDTVV----NCGRKMS--SFGLVSSQ 303 (477)
Q Consensus 234 ~~~~~~~--~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~--~~~~~i~----~~~~~~~--~~~~vs~~ 303 (477)
.++.|++ ..+.++..... ..+++++++||||.|+++|+|+||++ +.+..+. ..+.+.. .+..++.+
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~----~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (423)
T PLN02397 237 QGFASGDLDADAQSVRMFVE----DGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIH 312 (423)
T ss_pred CCccCCchhhhhHHHHHHHh----cCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHH
Confidence 9988754 23344444332 23579999999999999999999985 4443322 2222222 23346778
Q ss_pred HHHHHHHhcCChhhHHHH---HHHHHHHHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNF---LVETSKRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~---~~~~~~~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
.|.+++.+|+++++.+.+ +++.++++++|++.+.+.|+++| +.+..+++|+|+|++++. +++
T Consensus 313 ~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~-----------~~~ 381 (423)
T PLN02397 313 GASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNK-----------EQV 381 (423)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCH-----------HHH
Confidence 999999999987543344 67788999999999999999987 788889999999998851 478
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
..|++++||.|.++ + |++|++.+++.+++++++|+++++
T Consensus 382 ~~Ll~~~~V~v~~~--------~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 382 DRMTKEYHIYMTRD--------G--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHhCCEEECCC--------C--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 88999999999632 2 999987899999999999999986
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=356.59 Aligned_cols=334 Identities=22% Similarity=0.324 Sum_probs=268.4
Q ss_pred CccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|++++ +.+.+.+.+.. .....|++..+ .++|+++|++++ +++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 88 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAA-------------DELHRYPDGSG-FELKAALAEKFG--------VDPERII 88 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhcCCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 5678999999998853 45555555531 23457887654 799999999985 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++.+++.+++++||.|++++|+|..+...+... |+++++++++ ++.+|++++++++.+ ++++|
T Consensus 89 ~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~v 158 (367)
T PRK02731 89 LGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAV-GAKPVEVPAK---DYGHDLDAMLAAVTP------RTRLV 158 (367)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHc-CCeEEEeccc---CCCCCHHHHHHHhCC------CCcEE
Confidence 9999999999999999999999999999999888777665 9999999873 578999999988753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.++++++++.|+ +|+++|+||+|.++.+.+....++ ...+ ..+++++++||||.||++|+
T Consensus 159 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~-~~~~----~~~~~i~~~S~SK~~g~~G~ 232 (367)
T PRK02731 159 FIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGL-ELVA----KFPNVVVTRTFSKAYGLAGL 232 (367)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHH-HHHh----hcCCEEEEeeehHhhcCccc
Confidence 99999999999999999999999875 699999999999876655433333 2332 34679999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
|+||++++++ +.+.+.+....+.+++++|.++..+|++.++ +++.++.++++++.+.+.|++.|+.+.+ .+|+|
T Consensus 233 RiG~l~~~~~-~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~g~~ 306 (367)
T PRK02731 233 RVGYGIAPPE-IIDALNRVRQPFNVNSLALAAAVAALDDDAF----VEKSRALNAEGMAWLTEFLAELGLEYIP-SVGNF 306 (367)
T ss_pred ceeeeeCCHH-HHHHHHHccCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCCCccCC-CCceE
Confidence 9999999654 4455555444455788999999999987544 5677778888999999999999988764 45689
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|++++...+ ..++++.+. ++||.|+||..|+ .++++|++++ +.++++.+++.|+++++
T Consensus 307 ~~i~~~~~~~------~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 307 ILVDFDDGKD------AAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred EEEECCCCCC------HHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 9999864222 225666665 5699999998885 3679999998 67899999999999875
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=353.26 Aligned_cols=325 Identities=18% Similarity=0.304 Sum_probs=256.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+.-. .....|++. |.++||++||++++ +++++|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~-~~~~lr~aia~~~~--------~~~~~I~i 82 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALG------------DDLRLYPDP-NADALRQAIAAYYG--------LDPEQVFV 82 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhh------------hhhhcCCCC-cHHHHHHHHHHHhC--------CCHHHEEE
Confidence 46899999999985 5667776665311 124578766 56999999999985 67899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++.+++++++++||.|++++|+|+.|...++.. |++++++++++ +|.+|++++++ +.++|+
T Consensus 83 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~----------~~~~v~ 149 (353)
T PRK05387 83 GNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLY-GIPYEEIPLDD--DFSIDVEDYLR----------PNGGII 149 (353)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHh----------cCCEEE
Confidence 999999999999999999999999999999888877776 99999999863 57899998863 356899
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++++ ++++|+||+|.+ |.+....+ ... ..+++++++||||.+|+||+|
T Consensus 150 ~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~--~~~~~~~~---~~~----~~~~~i~~~S~SK~~~~~GlR 218 (353)
T PRK05387 150 FPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVD--FGGESAIP---LID----RYPNLLVVQTFSKSRSLAGLR 218 (353)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccc--cCCcchHH---HHh----hCCCEEEEEehhHhhcchhhh
Confidence 9999999999999999999998653 899999999986 44332222 222 346799999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc-c--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 277 VGIVYSFNDTVVNCGRKMS-S--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~-~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
+||++++++ +.+.+++.. . .+.++.++|.++..+|.+.++ +++.++++.++++.+.+.|++.|+.+.+ .+|
T Consensus 219 ~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~ 292 (353)
T PRK05387 219 VGFAIGHPE-LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAY----FEETRAKVIATRERLVEELEALGFEVLP-SKA 292 (353)
T ss_pred ceeeecCHH-HHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeECC-CcC
Confidence 999998654 444444433 2 234788999999999987554 5667788899999999999999987654 566
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++.. +..++++.+. ++||.|++... ...++++||+++ ++++++.++++|++++.
T Consensus 293 ~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~~--~~~~~~iRis~~--~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 293 NFVFARHPSH-------DAAELAAKLR-ERGIIVRHFNK--PRIDQFLRITIG--TDEEMEALVDALKEILA 352 (353)
T ss_pred cEEEEECCCC-------CHHHHHHHHH-HCCEEEEECCC--CCCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence 8999998731 1235677665 56999975322 124679999998 67999999999998864
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=353.71 Aligned_cols=347 Identities=20% Similarity=0.318 Sum_probs=269.7
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
++.++|+|+.++|+++ ++.+.+.+.+.... .....|++..|.+++|+++|++++ +++++|
T Consensus 26 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~--------~~~~~v 86 (380)
T PRK06225 26 KDKEMIWMGQNTNHLGPHEEVREAMIRCIEE-----------GEYCKYPPPEGFPELRELILKDLG--------LDDDEA 86 (380)
T ss_pred hcCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCcchHHHHHHHHHhcC--------CCCCcE
Confidence 3567899999999885 45555555443110 123568888899999999999985 578899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
++|+|+++++..++++++.+||.|++++|+|..+...++.. |.++++++++ ..++|.+|++++++++.. +++
T Consensus 87 ~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~ 159 (380)
T PRK06225 87 LITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRF-GAEVIEVPIYSEECNYKLTPELVKENMDE------NTR 159 (380)
T ss_pred EEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHh-CceEEeeccccccCCccCCHHHHHhhcCC------Cce
Confidence 99999999999999999999999999999999888777766 9999999975 345689999999988753 788
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|+++||+||||.+++.+++++|+++|+++|+++|+||+|.++.... .+...+ .+++++++.||||.+|++
T Consensus 160 ~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~------~~~~~i~~~s~SK~~g~~ 230 (380)
T PRK06225 160 LIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH---TLAAEY------APEHTVTSYSFSKIFGMA 230 (380)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC---Cchhhc------CCCCEEEEeechhhcCCc
Confidence 99999999999999999999999999999999999999998653221 222222 347889999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeE-ecC
Q 011801 274 GFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINC-LKS 350 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~-~~~ 350 (477)
|+|+||++++++ +.+.++.. ......+.++|.++..+|... .+++++.++.++++++.+.+.|+++ |+.+ ..+
T Consensus 231 G~RiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (380)
T PRK06225 231 GLRIGAVVATPD-LIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYP 306 (380)
T ss_pred cceeEEEecCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCC
Confidence 999999999655 44444433 223346788999888888653 2345666667777888888888874 5432 234
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+|+|+|++++... . +..++.+.+. ++||.+.||..|.. .+++++|++|+. +++++++++++|++++++.+
T Consensus 307 ~~g~~~~~~~~~~~----~-~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 307 SHGNMMVIDISEAG----I-DPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred CCCeEEEEEccccc----C-CHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHHHHhh
Confidence 56789999987421 1 1235667666 56999999987653 246799999985 88999999999999998654
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=352.03 Aligned_cols=320 Identities=19% Similarity=0.288 Sum_probs=253.1
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.++|+|+.|||+++++.. + . ......|++. +.++||+++|++++ +++++|++|
T Consensus 31 ~~~~~l~~ne~~~~~~~~---~-~--------------~~~~~~Yp~~-~~~~Lr~aia~~~~--------~~~~~I~it 83 (354)
T PRK04635 31 RGDIWINANESPFNNEYK---L-D--------------LARLNRYPEC-QPPELINAYSAYAG--------VAPEQILTS 83 (354)
T ss_pred CCcEEeeCCCCCCCCChh---h-h--------------hHHhccCCCC-CHHHHHHHHHHHhC--------cCHHHEEEe
Confidence 356999999999976521 1 0 1235679887 47999999999985 689999999
Q ss_pred CChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 118 GGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
+|+++++.+++.+++++| |.|+++.|+|+.|...++.. |+++++++++. +|.+|.+.++. + .++|+|+
T Consensus 84 ~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~-g~~v~~v~~~~--~~~~~~~~l~~-~-------~~~~li~ 152 (354)
T PRK04635 84 RGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETF-NVGVKALPLTA--DYQLPLDYIEQ-L-------DGAKLVF 152 (354)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCC--CCCCCHHHHHh-c-------cCCCEEE
Confidence 999999999999999999 99999999999998888776 99999999863 57888888862 2 1789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+||||||||.+++.+++++|++.|+ +++||+||+|.++.. . .+...+.. ..+++++++||||.+|+||+|
T Consensus 153 i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~--~--~s~~~~~~----~~~~~iv~~S~SK~~~l~GlR 222 (354)
T PRK04635 153 ICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCP--E--YSVADLLA----SYPNLVVLRTLSKAFALAGAR 222 (354)
T ss_pred EeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhcc--C--cchHHHHh----hCCCEEEEechHHHhhhhHHH
Confidence 9999999999999999999999876 499999999987532 1 23333333 347789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~ 355 (477)
+||++++++ +.+.+.+....+.++.+.|.++..+|.+..+ .++++..+.++++++.+.+.|++++ +.+.+++ |+|
T Consensus 223 lG~~i~~~~-~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-g~f 298 (354)
T PRK04635 223 CGFTLANEE-LIEILMRVIAPYPVPLPVSEIATQALSEAGL--ARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN-GNY 298 (354)
T ss_pred HhhhhCCHH-HHHHHHhhcCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC-CcE
Confidence 999999655 4454444444455788889888888876542 3356677788999999999999985 7777765 579
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+|++++. . .++.+ .+.++||.|++++.+ ..++++||+++ ++++++.++++|++.
T Consensus 299 ~~~~~~~---~------~~~~~-~l~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~~l~~al~~~ 352 (354)
T PRK04635 299 VLAKFDD---V------DAVFK-ALWDAGIVARAYKDP--RLANCIRFSFS--NRAETDKLIGLIRNQ 352 (354)
T ss_pred EEEECCC---H------HHHHH-HHHHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence 9998862 1 13444 456779999876543 24679999998 689999999998753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=347.29 Aligned_cols=313 Identities=19% Similarity=0.260 Sum_probs=244.6
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
+..+|+|+.|||+++++... +. ...+..||+.. .+||+++|++++ + .++++|++
T Consensus 23 ~~~~i~ls~Nenp~~~~~~~--~~---------------~~~~~~Yp~~~--~~L~~~ia~~~~------~-~~~~~I~i 76 (339)
T PRK06959 23 YDAWLDLSTGINPHGYPVPP--VP---------------ADAWRRLPEDD--DGLAACAARYYG------A-PDAAHVLP 76 (339)
T ss_pred hhhhceeccCCCCCCCCCCC--CC---------------HHHHHhCCCch--HHHHHHHHHHhC------C-CCcccEEE
Confidence 46789999999998764100 00 01345698753 899999999997 2 14689999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..+.. ++++|| |+++.|+|+.|...++.. |+++++++.+. +.+.+ .++.++
T Consensus 77 ~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~-g~~~~~v~~~~--------~~~~~----------~~~~v~ 135 (339)
T PRK06959 77 VAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFARH-GHRVVPLDEAA--------DTLPA----------ALTHLI 135 (339)
T ss_pred CcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHC-CCEEEeecccc--------hhccc----------cCCEEE
Confidence 9999999997765 567877 899999999999999877 99999988642 22211 456899
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+||||||||++++.+++++|++.|.+++.++|+||+|.++.+. .++.... ..+++++++||||.||+||+|
T Consensus 136 l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~-----~~~~vi~l~SfSK~~gl~GlR 206 (339)
T PRK06959 136 VVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHT-----DRPGLVVLRSVGKFFGLAGVR 206 (339)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhcc-----CCCCEEEEecChhhcCCcchh
Confidence 9999999999999999999999999999999999999975432 2333322 236789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~ 356 (477)
+||+++++ .+.+.+.+....+.++.++|.++..+|++.++ .++.++.++++++++.+.|++.|+++. .+++|+
T Consensus 207 iGy~v~~~-~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~f~ 279 (339)
T PRK06959 207 AGFVLAAP-ALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFAVH--ATPLFS 279 (339)
T ss_pred eEEEecCH-HHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCCcc--CcceEE
Confidence 99999965 45565665555666899999999999998665 566778999999999999999998765 357999
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
|++++. ..++++.+. ++||.|++ | ..++|+||+++. ++++++.+++.|+++++...
T Consensus 280 ~~~~~~---------~~~l~~~l~-~~GI~vr~---~--~~~~~lRisi~~-~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 280 WTDDPR---------AAALHAALA-RRGIWTRY---F--APPPSVRFGLPA-DEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred EEeCCC---------HHHHHHHHH-hCCeEEEE---C--CCCCeEEEECCC-CHHHHHHHHHHHHHHHHHHh
Confidence 998762 124666655 55999984 3 235699999953 77899999999998886543
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=346.35 Aligned_cols=340 Identities=20% Similarity=0.311 Sum_probs=265.1
Q ss_pred hcCCCCCCCCCCccccccccccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccC
Q 011801 26 FDRNPFHPTQNPGGVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRG 104 (477)
Q Consensus 26 ~~~~~~~~~~~~~~~i~l~~~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g 104 (477)
+.-.+|++..++.++|+|+.+++.. +++.+.+.+.+.. ..+..|++ .|.+++|+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~-~g~~~lr~~ia~~~~---- 71 (352)
T PRK03321 10 AGIPAYVPGKTVPGAIKLSSNETPFGPLPSVRAAIARAA-------------AGVNRYPD-MGAVELRAALAEHLG---- 71 (352)
T ss_pred hccCCCCCCCCcccceeccCCCCCCCCCHHHHHHHHHHH-------------HhcCcCCC-CcHHHHHHHHHHHhC----
Confidence 3445688878777899999999988 4566666665531 23456864 689999999999996
Q ss_pred CCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 105 GRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 105 ~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+++++|++|+|+++++..++..+++|||.|+++.|+|..|...++.. |.+++.+++++ ++.+|++++++++++
T Consensus 72 ----~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~ 144 (352)
T PRK03321 72 ----VPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVA-GATPVQVPLTP--DHTHDLDAMAAAITD 144 (352)
T ss_pred ----cCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHc-CCEEEEccCCC--CCCCCHHHHHHhhcc
Confidence 57899999999999999999999999999999999999887777766 99999999864 367899999988753
Q ss_pred HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEe
Q 011801 185 AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~ 264 (477)
++++|+++||+||||.+++.+++.++++.+ +++++||+||+|.++.+.+....++. ... ..+++++++
T Consensus 145 ------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~-~~~----~~~~vi~~~ 212 (352)
T PRK03321 145 ------RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLE-LVR----DHPNVVVLR 212 (352)
T ss_pred ------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHH-HHh----hCCCEEEEe
Confidence 788999999999999999999988888876 47999999999998877653322322 222 347899999
Q ss_pred cCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 011801 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG 344 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g 344 (477)
||||.||+||+|+||+++++ .+.+.+.+....+.+|.++|.++...|...+. +. +..+++.++++.+.+.|++.|
T Consensus 213 S~SK~~g~~GlRiG~~v~~~-~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~~---~~-~~~~~~~~~r~~~~~~L~~~~ 287 (352)
T PRK03321 213 TFSKAYGLAGLRVGYAVGHP-EVIAALRKVAVPFSVNSLAQAAAIASLAAEDE---LL-ERVDAVVAERDRVRAALRAAG 287 (352)
T ss_pred cchHHhhhHHHhhhhhcCCH-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH---HH-HHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999964 45555555555556899999988888875432 23 333444556678899999888
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+.+ .+|+|+|++++.. ..++.+.+ .++||.|.| |+ +.++||+++ +.+++++++++|++++
T Consensus 288 ~~~~~-~~g~~i~i~l~~~--------~~~~~~~l-~~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~ 349 (352)
T PRK03321 288 WTVPP-SQANFVWLPLGER--------TADFAAAA-AEAGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWR 349 (352)
T ss_pred CccCC-CCCCEEEEeCCCC--------HHHHHHHH-HHCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHh
Confidence 87654 4578999998521 12466665 567999987 42 346999997 7899999999999876
Q ss_pred h
Q 011801 425 Q 425 (477)
Q Consensus 425 ~ 425 (477)
.
T Consensus 350 ~ 350 (352)
T PRK03321 350 A 350 (352)
T ss_pred c
Confidence 4
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=337.37 Aligned_cols=309 Identities=22% Similarity=0.326 Sum_probs=238.2
Q ss_pred CCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 31 FHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
||-+.++.++|+|+.++|+++++.+.+.+.+.. .....|+. ...+|+++|++++
T Consensus 1 ~~~~~~~~~~i~l~~~~np~~p~~~~~a~~~~~-------------~~~~~yp~---~~~l~~~ia~~~~---------- 54 (311)
T PRK08354 1 YHGGIREEGLIDFSASVNPYPPEWLDEMFERAK-------------EISGRYTY---YEWLEEEFSKLFG---------- 54 (311)
T ss_pred CCCCCCccceeEecCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC---hHHHHHHHHHHHC----------
Confidence 566778899999999999998777777776531 12346764 3789999999985
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
++|++|+|+++++.+++..+ .+||.|++++|+|+.|...++.. |++++.++ +|++.++++++
T Consensus 55 -~~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~--------~d~~~l~~~~~------- 116 (311)
T PRK08354 55 -EPIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARFF-AARIIKGP--------NDPEKLEELVE------- 116 (311)
T ss_pred -CCEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHc-CCEEeecC--------CCHHHHHHhhc-------
Confidence 47999999999999888654 48999999999999999998877 99997654 46788877664
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+.+.++++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. . ..+++++++||||.|
T Consensus 117 ~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-~-----------~~~~vi~~~S~SK~~ 184 (311)
T PRK08354 117 RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES-P-----------EGENIIKLRTFTKSY 184 (311)
T ss_pred CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc-c-----------CCCcEEEEeccHhhc
Confidence 4567999999999999999999999999999999999999999987775421 1 247899999999999
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~ 350 (477)
|+||+|+||+++ +.+.+++....+.++...|.++..++++. + +++.+.++.+.++++.+.+.+ ..++
T Consensus 185 ~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~l------~~~~ 251 (311)
T PRK08354 185 GLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIEDD-F--EHLRKTMPLIWREKERFEKAL------YVKS 251 (311)
T ss_pred CCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHhH-H--HHHHHHHHHHHHHHHHHHHhc------CCCC
Confidence 999999999998 34445555566667777788888887742 2 334555555666655554443 2345
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+++ |+|++++. +.++++.+ .++||.|.||+.|+ .++|+||+++ ..++.+++++.|+++
T Consensus 252 ~~~-~~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~--~~~~iRi~~~--~~~~~~~l~~al~~~ 309 (311)
T PRK08354 252 DAN-FFIKDVGD---------AEKFVEFL-KRNGILVRDCTSFG--LPGYIRFSVR--DREENEKLIRALREW 309 (311)
T ss_pred CCc-EEEEECCC---------HHHHHHHH-HHCCeEEEecccCC--CCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence 565 55566542 12466665 45699999999996 3689999998 566777777777765
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=341.39 Aligned_cols=325 Identities=19% Similarity=0.323 Sum_probs=251.6
Q ss_pred cccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 40 VIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 40 ~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.++|+.++|+++ ++.+.+.+.+.-.. .....|++. +.+++|+++|++++ +++++|++|+
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~it~ 83 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKS-----------SQVNIYPDP-TAEKLREELARYCS--------VVPTNIFVGN 83 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhc-----------CcccCCCCc-cHHHHHHHHHHHhC--------CCcccEEEec
Confidence 389999999885 45556655542110 134568765 46999999999985 6789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~ 198 (477)
|+++++.+++.+++++||.|++++|+|+.+...++.. |.++++++++. +|.+|++++++++++. ++|+|+++
T Consensus 84 G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~k~v~l~ 155 (351)
T PRK14807 84 GSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIA-GAVEIPVKLKE--DYTYDVGSFIKVIEKY-----QPKLVFLC 155 (351)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHHhhcc-----CCCEEEEe
Confidence 9999999999999999999999999999888877776 99999999863 5789999999988632 78999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE
Q 011801 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278 (477)
Q Consensus 199 nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG 278 (477)
||+||||.+++.++++++++ +++.++|+||+|.++ + +....+ ... ..+++++++||||.+|+||+|+|
T Consensus 156 ~p~NPtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~-~-~~~~~~---~~~----~~~~vi~~~S~SK~~~~~GlRiG 223 (351)
T PRK14807 156 NPNNPTGSVIEREDIIKIIE---KSRGIVVVDEAYFEF-Y-GNTIVD---VIN----EFENLIVLRTLSKAFGLAGLRVG 223 (351)
T ss_pred CCCCCCCCCCCHHHHHHHHH---hCCCEEEEeCcchhh-c-ccchHH---Hhh----hCCCEEEEecchHhcccchhcee
Confidence 99999999999888777765 556789999999874 3 322222 222 34789999999999999999999
Q ss_pred EEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEE
Q 011801 279 IVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFW 357 (477)
Q Consensus 279 ~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~ 357 (477)
|+++++ .+.+.+......+.++.++|.++..+|+++. +++..+.+.++++.+.+.|.+. |+.+.++ +|+|+|
T Consensus 224 ~~v~~~-~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-~~~~~~ 296 (351)
T PRK14807 224 YAVANE-NILKYLNLVKSPYNINSLSQVIALKVLRTGV-----LKERVNYILNERERLIKELSKIPGIKVYPS-KTNFIL 296 (351)
T ss_pred eeecCH-HHHHHHHHccCCCCcCHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHhCCCcEECcC-CccEEE
Confidence 999954 4555555555556688999999999998642 3445556778888899999876 8877654 567999
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
++++. +.++++.+. ++||.|++++.+. ..++|+||+|+ +.++++.+++.|++++
T Consensus 297 i~~~~---------~~~~~~~l~-~~gV~v~~~~~~~-~~~~~iRis~~--~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 297 VKFKD---------ADYVYQGLL-ERGILVRDFSKVE-GLEGALRITVS--SCEANDYLINGLKELL 350 (351)
T ss_pred EEcCC---------HHHHHHHHH-HCCEEEEECCCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHhh
Confidence 99872 124555555 5699999865422 34679999998 5788899999988764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=337.65 Aligned_cols=310 Identities=19% Similarity=0.265 Sum_probs=238.5
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
+.++|+|+.|||+++++.. . +.. ..+..|++. ..+||++||++++ +++|++
T Consensus 19 ~~~~i~l~~ne~p~~~~~~-~-~~~---------------~~~~~yp~~--~~~Lr~~ia~~~~----------~~~I~i 69 (330)
T PRK05664 19 LADWLDLSTGIAPWPWPVP-A-IPA---------------DAWARLPET--DDGLEAAARAYYG----------APQLLP 69 (330)
T ss_pred HHHheeecCCcCCCCCCCc-c-cCH---------------HHHHhCCCC--hHHHHHHHHHHhC----------CCCEEE
Confidence 3468999999999865421 0 100 123458764 3899999999986 479999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++.+++. +.+||+|++++|+|+.|...++.. |+++++++++ +++++++ ++++++
T Consensus 70 t~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~----------~~~~~~~-------~~~~v~ 129 (330)
T PRK05664 70 VAGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWRRA-GHQVRELDEA----------EVEAALD-------SLDVLV 129 (330)
T ss_pred CcCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHHHc-CCeEEEechh----------hHhhhhc-------CCCEEE
Confidence 9999999998863 579999999999999999998887 9999998853 3444442 567899
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|++++++||+||+|.++ .. ..++..+. ..+++++++||||.+|+||+|
T Consensus 130 l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~--~~--~~s~~~~~-----~~~~vi~~~SfSK~~gl~GlR 200 (330)
T PRK05664 130 VVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN--TP--QHSLAACA-----HRPGLIVLRSFGKFFGLAGAR 200 (330)
T ss_pred EeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC--CC--cccccccc-----cCCCEEEEeeccccccCCCcc
Confidence 9999999999999999999999999999999999999764 22 12333332 346899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF 356 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~ 356 (477)
+||++++++ +.+.+.+....+.++.++|.++..+|.+.++ .++.++.++++++.+.+.|++.|++... ..++|+
T Consensus 201 iG~~v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~f~ 274 (330)
T PRK05664 201 LGFVLAEPA-LLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLTPAG-GCALFQ 274 (330)
T ss_pred eEEEEeCHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCcccC-CcceEE
Confidence 999999655 4454544444455889999999999987654 4566788999999999999998875322 223899
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|++++. ..++++.+ .++||.|++ |. .++++||+++. ++++++++++.|+++.++
T Consensus 275 ~~~~~~---------~~~~~~~l-~~~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 275 WVRTED---------AAALHEFL-ARRGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYRKE 328 (330)
T ss_pred EEecCC---------HHHHHHHH-HHCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence 998752 12455555 466999974 43 36799999985 577888888888877654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=339.90 Aligned_cols=335 Identities=22% Similarity=0.392 Sum_probs=265.2
Q ss_pred CCCCCCCC--Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCC
Q 011801 29 NPFHPTQN--PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGG 105 (477)
Q Consensus 29 ~~~~~~~~--~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~ 105 (477)
.||++..+ +.++|+|++++|+++ ++.+.+.+.+.. .....|++..+ +++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~----- 68 (346)
T TIGR01141 8 SPYQPARELGGKEVIKLNSNENPFGPPPKAKEALRAEA-------------DKLHRYPDPDP-AELKQALADYYG----- 68 (346)
T ss_pred CCCCCCCcCCCCceEEccCCCCCCCCCHHHHHHHHHhH-------------HHhhcCCCCCH-HHHHHHHHHHhC-----
Confidence 34545442 367999999999885 345566555531 13457887766 999999999996
Q ss_pred CCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 106 RVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 106 ~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
+++++|++|+|+++++..++..++++||+|++++|+|+.+...++.. |++++.++++. ++.+|++++++++.
T Consensus 69 ---~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~~~-- 140 (346)
T TIGR01141 69 ---VDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEVVKVPLDE--DGQLDLEDILVAID-- 140 (346)
T ss_pred ---cChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEeccCC--CCCCCHHHHHHhcC--
Confidence 56889999999999999999999999999999999999888777766 99999999864 36789999998753
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
.++++|++++|+||||.+++.++++++++.++ +++++|+||+|+++.+.. .+.+ ... ..+++++++|
T Consensus 141 ----~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~-~~~~---~~~----~~~~~i~~~S 207 (346)
T TIGR01141 141 ----DKPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP-STLP---LLA----EYPNLIVLRT 207 (346)
T ss_pred ----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc-cHHH---HHh----hCCCEEEEeh
Confidence 27899999999999999999999999999887 799999999998654322 2122 222 2356889999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
+||.+|++|+|+||+++++ .+.+.++.....+.+++++|.++..++++.+ ++.+.+++++++++.+.+.|+++ |
T Consensus 208 ~sK~~g~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g 282 (346)
T TIGR01141 208 LSKAFGLAGLRIGYAIANA-EIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLPG 282 (346)
T ss_pred hhHhhhchhhhceeeecCH-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999954 4555555555455678899999999998754 36677888899999999999988 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
+++.+ .+|+|+|++++. . ..++++.+. ++||.+.||+.|+.. ++++||+++ ++++++++++.|+
T Consensus 283 ~~~~~-~~g~~~~~~~~~--~------~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l~ 346 (346)
T TIGR01141 283 LEVYP-SDANFVLIRFPR--D------ADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAALR 346 (346)
T ss_pred CEECC-CcCCEEEEecCC--C------HHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHhC
Confidence 87654 457899999874 1 125666666 569999999988644 789999998 7899999988764
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=341.97 Aligned_cols=326 Identities=19% Similarity=0.325 Sum_probs=255.3
Q ss_pred CccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|++++ +.+.+.+.+.. .....|++..+ +++|+++|++++ +++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 90 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIEKEL-------------SKIHRYPEPDA-PELREALSKYTG--------VPVENII 90 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHHHH-------------HhhcCCCCCCH-HHHHHHHHHHhC--------CCHHHEE
Confidence 4578999999998854 45555554421 12456877654 999999999985 5789999
Q ss_pred E-eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 M-GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+ |+|+++++..++++++++||.|++++|+|+.+...++.. |++++.++.+ ++|.+|++++++++.. ++++
T Consensus 91 ~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~--~~~~~~~~~l~~~~~~------~~~~ 161 (361)
T PRK00950 91 VGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAH-GAKPVYAKRE--EDFSLDVDSVLNAITE------KTKV 161 (361)
T ss_pred EeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHhcc------CCCE
Confidence 9 799999999999999999999999999999988777766 9999998854 4678999999988753 7889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++.+|+ +++|+++|+||+|.++. +.. ...+.. ..+++++++||||.+|+||
T Consensus 162 v~~~~p~nptG~~~~~~~l~~l~---~~~~~~li~De~y~~~~--~~~---~~~~~~----~~~~vi~~~S~SK~~g~~G 229 (361)
T PRK00950 162 IFLCTPNNPTGNLIPEEDIRKIL---ESTDALVFVDEAYVEFA--EYD---YTPLAL----EYDNLIIGRTFSKVFGLAG 229 (361)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHH---HHCCcEEEEECchhhhC--ccc---hHHHHH----hcCCEEEEEeehHhhcCch
Confidence 99999999999999977766654 57899999999998753 222 222332 3468899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+|+||++++++ +...+++....+.+++++|.++..++.+.++ +++..++++++++.+.+.|. +.+. +.+|+
T Consensus 230 lRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~l~---~~~~-~~~~~ 300 (361)
T PRK00950 230 LRIGYGFVPEW-LIDYYMRAKTPFSLTRLSQAAAIAALSDKEY----IEKSIEHGIKSREYLYNELP---FKVY-PSEAN 300 (361)
T ss_pred hhcchhcCCHH-HHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhhcC---eeEC-CCcce
Confidence 99999999655 4444554544455888999999999987554 55666777888888887775 5554 45678
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|+|++++.. ...++++.+.+ +||.|+||..|...+++++|++++ +++++++++++|++++
T Consensus 301 ~i~~~~~~~-------~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il 360 (361)
T PRK00950 301 FVLVDVTPM-------TAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIV 360 (361)
T ss_pred EEEEECCCC-------CHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHh
Confidence 999999421 12357777765 599999999987656789999998 6789999999999875
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=335.65 Aligned_cols=317 Identities=17% Similarity=0.281 Sum_probs=244.1
Q ss_pred CCccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
.+.++|+|+.|+|++++ +.+.+.+.+.-. ......|++. |.++||+++|+|+++. + +++++|
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~-----------~~~~~~Y~~~-~~~~Lr~aia~~~~~~-~----~~~~~i 79 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLN-----------SDTLRIYYDS-PDEELIEKILSYLDTD-F----LSKNNV 79 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhh-----------hhhhhcCCCC-ChHHHHHHHHHHhCCC-C----CCcceE
Confidence 44688999999999964 455555544211 0123457765 8999999999999853 2 679999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++++.+++.++ |.|++++|+|+.|...++.. |++++.++++. +|.++... ++ +.++
T Consensus 80 ~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~----~~-------~~~~ 141 (335)
T PRK14808 80 SVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTK--DLRIPEVN----VG-------EGDV 141 (335)
T ss_pred EEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHHHc-CCeEEEecCCC--cCCCChhH----cc-------CCCE
Confidence 99999999999999888 67999999999999999987 99999999864 35554322 11 4689
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|||||||.+++++++++|+ +++++||+||+|.++ .+..+.+ .+. ..+++++++||||.+|+||
T Consensus 142 i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f--~~~~~~~---~~~----~~~~vi~~~S~SK~~~l~G 208 (335)
T PRK14808 142 VFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEF--HGESYVD---LLK----KYENLAVIRTFSKAFSLAA 208 (335)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhh--cCCchHH---HHH----hCCCEEEEEechhhccCcc
Confidence 99999999999999999998886 479999999999974 3322222 222 3468999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+|+||++++++ +.+.+.+....+.++.++|.++..++++.++ ..+..+.+.++++.+.+.|++.|+++.++++ .
T Consensus 209 lRvG~~v~~~~-~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g-~ 282 (335)
T PRK14808 209 QRIGYVVSSEK-FIDAYNRVRLPFNVSYVSQMFAKVALDHREI----FEERTKFIVEERERMKSALREMGYRITDSRG-N 282 (335)
T ss_pred cceEEEEeCHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEECCCCC-e
Confidence 99999999665 4555555544455888999999888876443 4556667778889999999999988877755 6
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
|+|+.++.. +..++.+.+ .++||.|+. | ++++||+++ +.++++.+++.|++|
T Consensus 283 f~~~~l~~~-------~~~~~~~~l-~~~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 283 FVFIFMEKE-------EKERLLEHL-RAKNIAVRS---F----REGVRITIG--KREENDMILKELEVF 334 (335)
T ss_pred EEEEeCCCc-------cHHHHHHHH-HHCCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHHhh
Confidence 889998731 112455554 456999984 3 357999998 689999999999865
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=336.39 Aligned_cols=316 Identities=17% Similarity=0.279 Sum_probs=243.0
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++|+|+.++|++++ +.+.+.+.+.-.. .....|++ .|.++||+++|+|++ +++++|++|
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~g~~~lr~~ia~~~~--------~~~~~I~~t 78 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKR-----------VPFNRYPH-ITSDPLREAIAEFYG--------LDAENIAVG 78 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhc-----------CccccCCC-CCHHHHHHHHHHHhC--------cCcceEEEc
Confidence 57999999999753 4455544432100 12457875 689999999999996 678999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++..++.++ +||.|++++|+|+.|...++.. |+++++++++. +|.+|++++++++. +++++++
T Consensus 79 ~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~-------~~~~v~~ 146 (337)
T PRK03967 79 NGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKLN-GIPVIDVPLKE--DFTIDGERIAEKAK-------NASAVFI 146 (337)
T ss_pred CCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCcCHHHHHHhcc-------CCCEEEE
Confidence 99999999998877 7999999999999888777766 99999999863 57899999887542 6788999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
+|||||||.+++.+++.+++ ++++++|+||+|.++. ..++. .... ..+++++++||||.||+||+|+
T Consensus 147 ~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~--~~~~~---~~~~----~~~~vi~l~S~SK~~~l~GlRi 213 (337)
T PRK03967 147 CSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFS--GKSLI---GLID----EYPNLILLRTFSKAFGLAGIRA 213 (337)
T ss_pred eCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhc--ccchH---HHHh----hCCCEEEEecchHhhcchhhhh
Confidence 99999999999987777665 3699999999999753 22222 2222 3467999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~ 357 (477)
||++++++ +.+.+.+....+.++.++|.++..+|++.++ ..+..+.+.++++.+.+.|.+.. .+.+++|+|
T Consensus 214 G~iv~~~~-~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~ 284 (337)
T PRK03967 214 GYAIANEE-IIDALYRIKPPFSLNILTMKIVRLALDHYDL----IEERIDYIIKERERVRRELGEYA----YPSDANFLL 284 (337)
T ss_pred eeeecCHH-HHHHHHhhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHhccCc----CCCCCcEEE
Confidence 99999654 5555555555566889999999999987654 34444555667778888887642 356789999
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++ +++.+++ +||.|+++.. ..++++||+++ +.++.+++++.|+++.+.+
T Consensus 285 ~~~~-------------~~~~l~~-~gi~v~~~~~---~~~~~~Ri~~~--~~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 285 LKLD-------------AYDYLLE-NGIVVRKLSG---RLEGHIRVTVG--KREENDEFIKALKEIKEGY 335 (337)
T ss_pred EhHH-------------HHHHHHH-CCEEEEeCCC---CCCCeEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 9774 3455554 5999998653 23679999998 5778888899988877653
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=331.86 Aligned_cols=312 Identities=22% Similarity=0.301 Sum_probs=250.7
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.++|+|+.++|+++++.+. .. ...+..|++..+ +++|+++|++++ +++++|++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~t 70 (330)
T TIGR01140 17 EDWLDFSTGINPLGPPVPP----IP-------------ASAWARYPDPEY-DELRAAAAAYYG--------LPAASVLPV 70 (330)
T ss_pred hheeEccccCCCCCCChhh----cc-------------hHHHhhCCCccH-HHHHHHHHHHhC--------CChhhEEEC
Confidence 3579999999999876211 11 134678988876 999999999986 568999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+|+++++..++.+ +.+| .|++++|+|..+...++.. |+++++++ |+++++++++ ++++|++
T Consensus 71 ~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~-g~~~~~~~---------d~~~l~~~~~-------~~~~v~i 131 (330)
T TIGR01140 71 NGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAA-GHEVVELP---------DLDRLPAALE-------ELDVLVL 131 (330)
T ss_pred CCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHc-CCEEEEeC---------CHHHHHhhcc-------cCCEEEE
Confidence 9999999998766 4677 6999999999999888876 99998887 5788887763 5678999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
++||||||.+++.+++++|+++|+++|++||+||+|.++.+. .++....+ ..+++++++||||.||+||+|+
T Consensus 132 ~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~----~~~~~~~~----~~~~~i~~~S~SK~~g~~G~R~ 203 (330)
T TIGR01140 132 CNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD----ASLAPQAA----RFPGLVVLRSLTKFFGLAGLRL 203 (330)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc----cchhhHhc----cCCCEEEEEecchhhcCchhhh
Confidence 999999999999999999999999999999999999876543 13333322 3578999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFF 356 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~ 356 (477)
||++++++ +...+..+...+.+|+++|.++..++.+.++ .+..+++++++++.+.+.|++.+ +.+. +.+|+|+
T Consensus 204 G~i~~~~~-~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~ 277 (330)
T TIGR01140 204 GFVVAHPA-LLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGGLEVV-GGTALFL 277 (330)
T ss_pred hheeCCHH-HHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEE
Confidence 99999665 5555655555556889999999999998665 45667889999999999999997 5554 4578999
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
|++++. ..++++.+++ +||.+.||..|...+++++||+++. +.++ +.++.+|
T Consensus 278 ~~~~~~---------~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 278 LVRTPD---------AAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred EEEcCC---------HHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 998873 1257777776 5999999999965566799999984 3333 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=302.09 Aligned_cols=341 Identities=18% Similarity=0.254 Sum_probs=266.0
Q ss_pred cccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCC
Q 011801 78 DIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 78 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
...+|+...|.++|...|.++.+...... ...+.+|++|+|.|.+++.+++.++++||.|+++.++|+.....++.. |
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p-~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~-g 169 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAP-PYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEAL-G 169 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCC-CCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcccc-C
Confidence 45689999999999999999665222211 133458999999999999999999999999999999999998888877 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHh---CCCeeEEEEeCC--CCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEA---SINIKGLIITNP--SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~---~~~~k~vii~nP--~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
++++||++|.+ +++++.|++.+.+.... +++++ |+.|-| +||||.+++.++.++|.++|++|+++||+||.
T Consensus 170 v~~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp 245 (472)
T KOG0634|consen 170 VKIIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP 245 (472)
T ss_pred ceEEeccccCC---CCCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence 99999999754 48999999999876433 24444 677777 79999999999999999999999999999999
Q ss_pred ccccccCC--------CCcccHHHhhh----h---ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc-
Q 011801 233 YAATVFSS--------PKFTSVAEVIQ----E---MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS- 296 (477)
Q Consensus 233 y~~~~~~~--------~~~~s~~~~~~----~---~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~- 296 (477)
|.-+.|.. .+..+...+.. . .+ ..++||...||||.++ ||+|+||+.+++..+...+.....
T Consensus 246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslD-tdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLD-TDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred cceeeccccCCCccccCccccHHHHHHhhcCCccccc-ccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhccee
Confidence 98766652 12222112221 1 11 4689999999999997 999999999977666665543311
Q ss_pred cCCCchHHHHHHHHhcCCh---hhHHHHHHHHHHHHHHHHHHHHHHHhhC---C-CeEecCCceEEEEeeccc--hhhcc
Q 011801 297 FGLVSSQTQYLLASMLSDD---EFVDNFLVETSKRLAKRHHNFTKGLEQV---G-INCLKSNAGLFFWMDLRH--LLKEK 367 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L~~~---~~~~~~~~~~~~~l~~r~~~l~~~L~~~---g-i~~~~~~~g~~~~~~l~~--~~~~~ 367 (477)
-...|.++|.++.++|..- .| -+++.+.+..+..|+..++.+|.+. + .++.+|.+|+|+|++++- ....+
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~-~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~ 402 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGF-LRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKK 402 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccccccccc
Confidence 1126778888888888743 33 4788999999999999999999885 4 678899999999999981 11222
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCC-CC----CEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCT-EP----GWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~----~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
...+-+++....+.+.||.+.+|+.|... +. -+||++++..+.|+++++++|+..+++++
T Consensus 403 ~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 403 SINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred chHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 33333345555666779999999999754 22 29999999889999999999999999875
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=282.37 Aligned_cols=318 Identities=30% Similarity=0.535 Sum_probs=253.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
...|++..|..+++++++++++..++ ....++++++++|+++++..++.++.++||+|+++.|+|..+...++.. |.
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~ 105 (350)
T cd00609 29 LLGYYPDPGLPELREAIAEWLGRRGG--VDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA-GA 105 (350)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CC
Confidence 45688888999999999999997654 2345778999999999999999999999999999999999999998877 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+++.++.+..+.+..+.+.++... +.++++|++++|+||||.+++.+++++|+++|+++|+++|+|++|+++.+
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 106 EVVPVPLDEEGGFLLDLELLEAAK------TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY 179 (350)
T ss_pred EEEEEecccccCCccCHHHHHhhc------CccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence 999999876554443324444432 34889999999999999999999999999999999999999999997655
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~ 316 (477)
.+... +...... ..+.+++++|+||.++++|.|+|+++++++.+.+.++....+ +..+...|.++..+|....
T Consensus 180 ~~~~~-~~~~~~~----~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (350)
T cd00609 180 DGEPP-PALALLD----AYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE 254 (350)
T ss_pred CCccc-ccccCcC----ccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH
Confidence 44332 1001111 346788999999999999999999999774565555544333 4577788888888888763
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+..++.++++.++++.+.+.|++.+... ..+.+|+++|++++... ..+.+..++.+.||.+.++..|..
T Consensus 255 ---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~l~~~gi~i~~~~~~~~ 324 (350)
T cd00609 255 ---EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD-------DEEFLERLLLEAGVVVRPGSAFGE 324 (350)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC-------hHHHHHHHHHhCCEEEeccccccc
Confidence 4467778889999999999999986543 46678899999988531 123566777888999999988875
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
..+.++|++++.. +++++.++++|+
T Consensus 325 ~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 325 GGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred CCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 5677999999976 999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=269.79 Aligned_cols=339 Identities=25% Similarity=0.419 Sum_probs=269.3
Q ss_pred cccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhhhC
Q 011801 78 DIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSWRT 156 (477)
Q Consensus 78 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~~~ 156 (477)
.+..|.+..|++-+|+.+|+|..++-| ++.+|++|++|.|++.|+..++.+++ ++.+.|++|-|.||-|...+...
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG--~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~- 181 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDG--IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLL- 181 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccC--CCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHh-
Confidence 456799999999999999999998877 78999999999999999999999874 57799999999999998888877
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|...+++-++++.+|.+|.++|+..++++. .+++++++++.||.||||.+++++.+++|+.+|.+++++|+.||+|.+-
T Consensus 182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 182 GGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDN 260 (475)
T ss_pred CCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence 999999999999999999999999999987 7899999999999999999999999999999999999999999999999
Q ss_pred ccCCC-CcccHHHhhhhccCC-CCc--EEEEecCCcc-cCCCCceEEEEEe--CCHHHHHHHHHhcccCCCch-HHHHHH
Q 011801 237 VFSSP-KFTSVAEVIQEMDCN-RDL--IHIIYSLSKD-MGLPGFRVGIVYS--FNDTVVNCGRKMSSFGLVSS-QTQYLL 308 (477)
Q Consensus 237 ~~~~~-~~~s~~~~~~~~~~~-~~~--viiv~SlSK~-~g~~G~RvG~i~~--~~~~i~~~~~~~~~~~~vs~-~~q~~~ 308 (477)
+|... .|.|+...+.+++.. +++ ++.++|.||. +|=.|.|-||.-+ ..+.+.+...++.+-...++ ..|...
T Consensus 261 vy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~v 340 (475)
T KOG0258|consen 261 VYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLV 340 (475)
T ss_pred ccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhh
Confidence 88864 899999988877532 223 4556889998 5568899999743 34455555555554433333 345555
Q ss_pred HHhcC-----ChhhHHHHH---HHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhh------ccCchHHH
Q 011801 309 ASMLS-----DDEFVDNFL---VETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLK------EKTLEGEI 373 (477)
Q Consensus 309 ~~~L~-----~~~~~~~~~---~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~------~~~~~~e~ 373 (477)
..+.. +..+ +.+. ......++.|.+.+.+.+..+ |+.|.+++|.+|++..+.=..+ ......++
T Consensus 341 dl~VnPP~Pgd~Sy-~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~ 419 (475)
T KOG0258|consen 341 DLVVNPPKPGDPSY-DLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDE 419 (475)
T ss_pred ceecCCCCCCCcch-hhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcH
Confidence 55554 2222 2222 334667888888999999988 9999999999999876541111 11222344
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCC-CEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQCTEP-GWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~~~~~-~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
-.+.+||+..||.+.|||.|+..+. -+||.+|- +.. + +.++++++|-+
T Consensus 420 FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiL--p~~-~-~~i~~~~~fH~ 468 (475)
T KOG0258|consen 420 FYCLKLLEATGICVVPGSGFGQKEGTYHFRTTIL--PPG-L-EIIEKFKKFHA 468 (475)
T ss_pred HHHHHHHHhcCeEEecCCCCCCCCceeEEEEeec--Cch-h-HHHHHHHHHHH
Confidence 5788999999999999999996432 37999986 333 4 77777777654
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=257.72 Aligned_cols=146 Identities=66% Similarity=1.211 Sum_probs=136.1
Q ss_pred ccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccc-cccccccc
Q 011801 2 GILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEG-VEVFKDIA 80 (477)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (477)
++||++|++++|||+|+||+||++|++||||+..||+|+|+||++||++++|++..|+.++|++.++++++ +..+.++.
T Consensus 7 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~a 86 (153)
T PLN02994 7 QLLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIA 86 (153)
T ss_pred hhhhhhcccccCCCCchHHHHHHHHhcCCCCcccCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999988777777666 44555667
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA 147 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~ 147 (477)
.|++++|.++||+++|+|+.+.+|.++.+++++|++|+|+++|++.++++|++|||.|++++|+|++
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 8999999999999999999999887777899999999999999999999999999999999999974
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=282.57 Aligned_cols=317 Identities=15% Similarity=0.225 Sum_probs=239.5
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
..|.+..|.++||++++++++ .+++++|+|+++|+.+++.++++||| |++++|.|+.+...+... |.+
T Consensus 72 ~~Y~~~~g~~~Lreaia~~~~----------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~-G~~ 139 (460)
T PRK13238 72 EAYAGSRSYYRLEDAVKDIFG----------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELN-GAT 139 (460)
T ss_pred cccCCCCCHHHHHHHHHHHhC----------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHc-CCE
Confidence 479999999999999999997 35799999999999999999999999 999999999998878776 999
Q ss_pred EEEEeccCC------CCcc--cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 160 IVPVHCDIS------NNFK--ITREALEAAYERAQEASINIKGLIITNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 160 ~~~v~~~~~------~~f~--i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
++.++++.. ++|+ +|+++|++++.+.. ..++++|++++|+|||| .+++.+++++|.++|++||++||+|
T Consensus 140 ~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~D 217 (460)
T PRK13238 140 AVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVID 217 (460)
T ss_pred EEEEeccccccccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999998642 4566 99999999986421 13699999999999998 9999999999999999999999999
Q ss_pred cccc--ccccCC-----CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE------EEEEeCCHHHHHHHHHhc--
Q 011801 231 EIYA--ATVFSS-----PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV------GIVYSFNDTVVNCGRKMS-- 295 (477)
Q Consensus 231 e~y~--~~~~~~-----~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv------G~i~~~~~~i~~~~~~~~-- 295 (477)
+++. ..+|.. ....++.++. ..++|++|.+.+.|+|+ |+++++++.+.+.++...
T Consensus 218 aa~~~e~a~f~~~~e~g~~~~si~~i~----------~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~ 287 (460)
T PRK13238 218 AARFAENAYFIKQREPGYKDKSIKEIA----------REMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCIL 287 (460)
T ss_pred CcchhhhhhhhhhccccccCCCHHHHh----------hhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccc
Confidence 9763 233432 1234544432 22345555555555554 466665556666555442
Q ss_pred -----ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh---cc
Q 011801 296 -----SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK---EK 367 (477)
Q Consensus 296 -----~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~---~~ 367 (477)
.++..+...|.+++..|.+..- +.++..+ .+++++|.+.|.+.|+++..|.+|+|+++++...+. ..
T Consensus 288 ~~g~~t~~g~~~~~~~Ala~~l~e~~~-~~~~~~~----~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~ 362 (460)
T PRK13238 288 YEGFPTYGGLAGRDMEALAVGLYEGMD-EDYLAYR----IGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAE 362 (460)
T ss_pred cCCcccccCcHHHHHHHHHhhHHHhhC-hHHHHHH----HHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCC
Confidence 2333455567777766653110 2233333 225689999999999999999999999999976432 11
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCCC-----------CCEEEEEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTE-----------PGWFRVCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~-----------~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
.+. ..+++..|+.+.||.+.|++.|.... ...+|+++.. .++++++.+.++|+.+.++
T Consensus 363 ~~~-~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 363 QFP-AQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred CCc-hHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 222 25789999999999999999887533 4689999975 3999999999999998865
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=253.71 Aligned_cols=305 Identities=20% Similarity=0.330 Sum_probs=241.5
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
.|+++. ..+++.+++.- -++++|+|+++.|+.+.+.++++|.+.|| ++|++-.|+|..|.-.+... +++
T Consensus 65 ~~~d~r-nk~ls~a~~~d--------kpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iN-d~e 134 (375)
T KOG0633|consen 65 VYPDPR-NKRLSDALAQD--------KPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAIN-DAE 134 (375)
T ss_pred ccCCcc-cchhhhhcccC--------CCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecC-Cce
Confidence 355543 24555555443 24789999999999999999999999999 99999999999998888776 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.+|.++ +|+++.+++.+.++. ..++|.+++|+|+||||..+..+.+++|++.-. |.++|+||+|.+ |.
T Consensus 135 Vvkvpl~p--dF~lnvdai~evl~~----ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYid--Fs 204 (375)
T KOG0633|consen 135 VVKVPLNP--DFSLNVDAIAEVLEL----DSKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYID--FS 204 (375)
T ss_pred EEEecCCC--CccccHHHHHHHHhc----cccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEe--ec
Confidence 99999875 899999999998875 347999999999999999999999999988543 889999999987 55
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+. .|-..++. .+.+++++.+|||.||++|+|+||-+. +..+...+.++.....+|..+..++.++|++.. -
T Consensus 205 g~--~S~~~lV~----kYpNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~ 275 (375)
T KOG0633|consen 205 GV--ESRMKLVK----KYPNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--G 275 (375)
T ss_pred cc--cccchHhH----hCCceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--c
Confidence 42 24444555 679999999999999999999999988 455778888887777799988888889999654 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE 397 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~ 397 (477)
+.++..++.+-+.+.++.+.|.++ ++. +..+...+|+.+++.+..+ .-...+..+++.+.||.|+- ..++
T Consensus 276 kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n----~~akkly~q~at~~gVvVRf----rgse 347 (375)
T KOG0633|consen 276 KKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDN----GMAKKLYKQDATKMGVVVRF----RGSE 347 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCc----HHHHHHHHHHHHhcceEEEE----cCCc
Confidence 346777888888889999999887 332 2333444788888875321 11235677778889999973 3222
Q ss_pred ---CCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 398 ---PGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 398 ---~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.|++|++++ ++|+.+.+++.|++++
T Consensus 348 ~~c~G~lRitvG--t~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 348 EGCKGYLRITVG--TPEENTVLMKCLKQFL 375 (375)
T ss_pred cccceeEEEEcC--CcccchHHHHHHHhhC
Confidence 579999999 7888999999998864
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-30 Score=255.33 Aligned_cols=282 Identities=13% Similarity=0.145 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc---CCCccchHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP---SPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~---~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
..+|++++|+|++ ++++++++++|+++|+..++.+|++|||.|+++ .|+|+.+...++.. |++++.+
T Consensus 56 ~~~Le~~lA~~~g--------~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~-ga~~~~~- 125 (346)
T TIGR03576 56 EEKVQELGREHLG--------GPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLA-GAEYFES- 125 (346)
T ss_pred HHHHHHHHHHHcC--------CCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHc-CCEEecc-
Confidence 3566677777765 578999999999999999999999999999975 47888888888876 8876432
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.++++++. ..++++|+++ ++||+|.+++.+++++|+++|+++|++||+||+|+..+.......
T Consensus 126 --------~~l~~l~~--------~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~ 188 (346)
T TIGR03576 126 --------DELSELKK--------IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP 188 (346)
T ss_pred --------CCHHHHhh--------CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCC
Confidence 13444321 1256777775 579999999999999999999999999999999986543211111
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cccC-CCchHHHHHHHHhcCChhhHHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSFG-LVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~~-~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
+.... +..++++|||| +++|+|+||++++++ +.+.+++. .++. +++++.|.++..+|+... .
T Consensus 189 ~~~~~--------~~divv~s~SK--alaG~r~G~v~~~~~-li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~-----~ 252 (346)
T TIGR03576 189 PALDL--------GADLVVTSTDK--LMDGPRGGLLAGRKE-LVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE-----L 252 (346)
T ss_pred CHHHc--------CCcEEEeccch--hccccceEEEEeCHH-HHHHHHHhhcCcccCccHHHHHHHHHHHhhcc-----H
Confidence 21111 12366789999 569999999999665 44555444 3333 257788888888886532 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
+..++.++++++.+.+.+.. +.+.++.+| |+|++++.. +..+++..+++++||.|+||+.|. ..++|+|
T Consensus 253 ~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~vR 321 (346)
T TIGR03576 253 SRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKTLR 321 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCeEE
Confidence 44567888888888888874 445555555 899998741 112467788889999999999884 3478999
Q ss_pred EEeccCCHH---HHHHHHHHHHHHH
Q 011801 403 VCFANMDDD---TLQVALNRIAAFV 424 (477)
Q Consensus 403 l~~~~~~~e---~l~~~l~~l~~~~ 424 (477)
||++. +++ +++.+++.|++-+
T Consensus 322 is~~~-~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 322 FDLAA-KDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred EEEec-ChHHhcCHHHHHHHHHhcc
Confidence 99994 333 6999999887643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=260.06 Aligned_cols=322 Identities=15% Similarity=0.188 Sum_probs=222.3
Q ss_pred ccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC
Q 011801 40 VIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG 119 (477)
Q Consensus 40 ~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G 119 (477)
+|||+.|+|+.+++.+.+.+.+.. .....|.+..+..+|++++|++++ + +.+++++|
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~~-------------~~~~~Y~~~~~~~~L~~~la~~~g--------~--~~~~v~~~ 57 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAAP-------------VGDDVYGDDPTVNALQDYAAELSG--------K--EAALFLPT 57 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhcc-------------CCCcccCCCHHHHHHHHHHHHHhC--------C--CeEEEeCc
Confidence 489999999998888888776642 134568555578999999999987 2 34567888
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCccc-hHHH-HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 120 ATGANELIMFCLANPGDAFLVPSPYYAA-FDRD-LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 120 ~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~~~-~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
+++++.+++.+++++||.|+++.|+|.. +... .....++++++++++ .+|.+|+++|++++.+...+..++++|++
T Consensus 58 g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 58 GTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred hHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 8888888888889999999999888753 3211 233313677777765 46889999999887531111125789999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
|||+ +|++++.+++++|+++|++++++||+||+|. |... ...+...+.. ..++++ .||||.+|++
T Consensus 136 ~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~---~~~~~~~~~~~~~~~~----~~~~~~--~s~SK~~~~~-- 202 (333)
T PRK10534 136 ENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARI---FNAVVAYGCELKEITQ----YCDSFT--ICLSKGLGTP-- 202 (333)
T ss_pred ecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHH---HHHHHHcCCCHHHHHh----cCCEEE--EEeEcCCCCc--
Confidence 9776 5999999999999999999999999999986 3210 0122222221 123333 4899999865
Q ss_pred eEE-EEEeCCHHHHHHHHHhcccCC----CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC
Q 011801 276 RVG-IVYSFNDTVVNCGRKMSSFGL----VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350 (477)
Q Consensus 276 RvG-~i~~~~~~i~~~~~~~~~~~~----vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~ 350 (477)
+| |+++ ++.+.+.++++...+. .+.+.|.++...|++ . .+ ..++..+.++++.+.|++.|+++.++
T Consensus 203 -~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~--~----~~-~~~~~~~~r~~l~~~L~~~g~~~~~~ 273 (333)
T PRK10534 203 -VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH--N----VA-RLQEDHDNAAWLAEQLREAGADVMRQ 273 (333)
T ss_pred -ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh--h----HH-HHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 78 5777 4455565555443321 223455555555532 1 11 22223445688999999999988877
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-cCCHHHHHHHHHHHHHHHh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~l~~~l~~l~~~~~ 425 (477)
+ ++|+|++++.. ...++. ..+.++||.|+||. ++|++.. ..+++++++++++|++++.
T Consensus 274 ~-~nfv~~~~~~~-------~~~~~~-~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 274 D-TNMLFVRVGEE-------QAAALG-EYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred C-ceEEEEECCch-------hHHHHH-HHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 4 68999998731 112344 56667799999873 4788764 2589999999999998875
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=238.54 Aligned_cols=375 Identities=18% Similarity=0.287 Sum_probs=257.6
Q ss_pred chhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHH
Q 011801 20 FDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFM 99 (477)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~ 99 (477)
+.|.-..-.|-...-+ ..|.|.+|-+ |+.-.+.+.+.....-. ... .+| ...+.+.+|..++|...|.+++++++
T Consensus 13 ~sGi~~lMdDl~d~Lr-t~g~imLggG-NPa~iPem~~~f~~~~a-eml-a~~-~~~e~~cnY~~pQG~~~li~ala~~l 87 (417)
T COG3977 13 HSGITQLMDDLNDGLR-TPGAIMLGGG-NPARIPEMDDYFQDLLA-EML-ASG-KATEALCNYDGPQGKAVLIDALAKML 87 (417)
T ss_pred hhhHHHHHHHHHhhcc-CCCceeeCCC-CcccChhHHHHHHHHHH-HHH-hcc-hHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 3444444444333333 3467888755 56544444443332100 000 011 01245789999999999999999999
Q ss_pred hcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC---C--CeEEEc-CCCccchHHHHhhhCCcEEEE----EeccCCC
Q 011801 100 GKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP---G--DAFLVP-SPYYAAFDRDLSWRTGVQIVP----VHCDISN 169 (477)
Q Consensus 100 ~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~---G--d~vlv~-~P~y~~~~~~~~~~~g~~~~~----v~~~~~~ 169 (477)
++.+| ..+++.+|.+|+|++.+...++..|.+. | .+|++| .|.|.+|....- - +--++. +...+.+
T Consensus 88 ~~~yg--wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l-~-~d~fVs~kP~iel~~~g 163 (417)
T COG3977 88 RREYG--WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGL-E-EDLFVSAKPNIELLPAG 163 (417)
T ss_pred HHHhC--CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccccccc-C-ccceeeccCCccccccc
Confidence 99988 4577999999999999999999888542 3 356666 789998875421 1 111111 1222233
Q ss_pred --CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 170 --NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 170 --~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.|.+|.++|+-. .++.+|+++-|.||||.+++.+|+.+|-.+|++||+.+|+|.+|+-- |.+--|..+.
T Consensus 164 ~FKY~vDF~~l~i~--------e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~~ 234 (417)
T COG3977 164 QFKYHVDFEHLHIG--------ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDAT 234 (417)
T ss_pred ceeeccCHHHcccc--------cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceeccccc
Confidence 356677776542 37888999999999999999999999999999999999999999732 4332232222
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC--CchHHHHHHHHhcCChhhHHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--VSSQTQYLLASMLSDDEFVDNFLVET 325 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~--vs~~~q~~~~~~L~~~~~~~~~~~~~ 325 (477)
-+ -.++++.+.|+|| +|+||.|+|++++ ++.+++.+..|....+ .+...+++++.|++.++..+---+-.
T Consensus 235 ~~------w~~NiilC~SLSK-~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVI 306 (417)
T COG3977 235 PL------WNENIILCMSLSK-LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVI 306 (417)
T ss_pred cc------CCCCEEEEeehhh-cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhh
Confidence 22 2478899999999 7899999999999 6667777776654322 45588999999999888632111222
Q ss_pred HHHHHHHHHHHHHHHh----hCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC----
Q 011801 326 SKRLAKRHHNFTKGLE----QVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE---- 397 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~----~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~---- 397 (477)
+--++++.+.....|+ +..+.+.++++..|+|+=+.++.-. .+++.+++ +++||++.||..|.+.-
T Consensus 307 rPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPIt-----t~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ew 380 (417)
T COG3977 307 RPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPIT-----TEELYQRL-KARGVLMVPGHYFFPGLDKEW 380 (417)
T ss_pred hHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCC-----HHHHHHHH-HhCeEEEecccccCCCCCCCC
Confidence 3445555555555554 4456677899999999877654322 23566655 56699999999997642
Q ss_pred ---CCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 398 ---PGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 398 ---~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
..++|+++.. ++++++.++++|.+.+++.
T Consensus 381 pH~hqC~Rmn~~~-~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 381 PHTHQCMRMNYVP-EPEKIEKGVAILAEEVERA 412 (417)
T ss_pred CCccceEEEecCC-CHHHHHHHHHHHHHHHHHH
Confidence 3489999985 8899999999999998763
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=250.52 Aligned_cols=316 Identities=17% Similarity=0.268 Sum_probs=232.2
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
.|.+..|.++|+++++++++ .+++++|+|+++|+.+++.++++|||.| +++|+|+.+...+... |.++
T Consensus 48 ~Y~~~~g~~~Leeaia~~~g----------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~-Ga~p 115 (431)
T cd00617 48 AYAGSKSFYDLEDAVQDLFG----------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEAN-GAVP 115 (431)
T ss_pred ccCCCCCHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhC-CCEe
Confidence 59999999999999999997 3579999999999999999999999977 6999999998888877 9999
Q ss_pred EEEeccCCCC------cc--cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 161 VPVHCDISNN------FK--ITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 161 ~~v~~~~~~~------f~--i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
+.++++...+ |+ +|+++|++++.+. ...++++|++++|+||+ |.+++.+++++|.++|+++|++||+|+
T Consensus 116 v~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~Da 193 (431)
T cd00617 116 VDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDA 193 (431)
T ss_pred EEEecccccccccccCCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 9999875433 44 9999999999741 01248899999999998 999999999999999999999999999
Q ss_pred cccc--ccc-----CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce------EEEEEeCCHHHHHHHHHhc---
Q 011801 232 IYAA--TVF-----SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR------VGIVYSFNDTVVNCGRKMS--- 295 (477)
Q Consensus 232 ~y~~--~~~-----~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R------vG~i~~~~~~i~~~~~~~~--- 295 (477)
+... .+| ++....++.++. +.++|+||.+.+.|+| .||++++++.+.+.++...
T Consensus 194 Ar~~~na~~i~~r~~g~~~~si~ei~----------~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~ 263 (431)
T cd00617 194 ARFAENAYFIKEREEGYRDKSIAEIA----------REMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLY 263 (431)
T ss_pred hhhHhhhhhhhcccccccCCCHHHHH----------HHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhcccc
Confidence 9541 123 122334554432 2355777777777766 5699997766666555321
Q ss_pred ----ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc---cC
Q 011801 296 ----SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE---KT 368 (477)
Q Consensus 296 ----~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~---~~ 368 (477)
.++..+.-...+++..|....- .+++ .++++ +++++.+.|.+.|+++..|.+|+|+|++.+..+.. ..
T Consensus 264 ~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l---~~~~~-~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~ 338 (431)
T cd00617 264 EGFVTYGGMAGRDMEALAQGLREAVE-EDYL---RHRVE-QVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQ 338 (431)
T ss_pred CCccccccccHHHHHHHHHHHHhccc-HHHH---HHHHH-HHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCccc
Confidence 1222233222333435533110 1222 33344 44899999999999999999999999999864321 12
Q ss_pred chHHHHHHHHHHHhcCeEEeC-CCCC-C--CC-------CCCEEEEEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 369 LEGEIALWRTIVNDVKLNVSP-GSSF-Q--CT-------EPGWFRVCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~p-g~~f-~--~~-------~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
+ ...+++..++.+.||.+.. |+.. + +. ....+|+++.. .+.++++.+.++|..+.++
T Consensus 339 ~-~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 339 F-PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred C-cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 2 2447888999999999654 4421 1 11 12579999965 4999999999999999987
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=246.21 Aligned_cols=300 Identities=14% Similarity=0.189 Sum_probs=209.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..++++++|+|++ .+.+++++|+++++..++.++.++||.|+++.+.|......++.. |++++.++.+.
T Consensus 53 ~~~~~e~lA~~~g----------~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~-g~~~~~~~~~~ 121 (370)
T TIGR02539 53 IHDFLEDLAEFLG----------MDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERA-GLNVKEVPHTG 121 (370)
T ss_pred HHHHHHHHHHHhC----------CCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHc-CCEEEEEecCC
Confidence 4688999999987 245777999999999999999999999999988855555566655 99999999765
Q ss_pred CCCcccCHHHHHHHHHHHHHh-CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 168 SNNFKITREALEAAYERAQEA-SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~-~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
+++|.+|+++|++++++.... ..++++|++++|+||||...+ +++|+++|+++|+++|+||+|+.. ..+ .+.
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g---~~~-~~~ 194 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVG---RMP-VSA 194 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccC---CcC-CCH
Confidence 567899999999998753221 136789999999999999888 777888899999999999999842 111 121
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCch----------HHHHHHHHhcCChh
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSS----------QTQYLLASMLSDDE 316 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~----------~~q~~~~~~L~~~~ 316 (477)
. ..+..++++|+||++| +|.|+||++++++.+ +.++....++.++. ..+.++...+.+
T Consensus 195 ~--------~~~~di~v~s~sK~~~-~~g~~G~l~~~~~~i-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-- 262 (370)
T TIGR02539 195 K--------EIGADFIVGSGHKSMA-ASGPCGVLGMSEEWE-DIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH-- 262 (370)
T ss_pred H--------HcCCCEEEeeCccccc-CCCCEEEEEECHHHH-hhhcccccCCccceeeeecccccccHHHHHHHHHHH--
Confidence 1 1133467799999998 677899999966544 44443332221211 134444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe--cCCceEEEEeeccchhh--ccCchHHHHHHHHHHHhcCeE-EeCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCL--KSNAGLFFWMDLRHLLK--EKTLEGEIALWRTIVNDVKLN-VSPGS 391 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~--~~~~g~~~~~~l~~~~~--~~~~~~e~~l~~~ll~~~gI~-v~pg~ 391 (477)
. .+++++..+.++.+ +++.++|++.|+++. .+..++|++++++.... .........+.+.| .+.||. +++|
T Consensus 263 ~-~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L-~e~GI~~ir~~- 338 (370)
T TIGR02539 263 V-VERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEEL-KKRGIHGIRSG- 338 (370)
T ss_pred H-HHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHH-HhCCCccccCC-
Confidence 1 23344444444444 589999999998763 24556899998863210 00001112344554 456997 6543
Q ss_pred CCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 392 SFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++++|+++...+++++++++++|++++++
T Consensus 339 -----~~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 339 -----QTKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred -----cceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 256899998445999999999999998865
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=248.87 Aligned_cols=305 Identities=14% Similarity=0.112 Sum_probs=213.3
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
..|.+++++++++++.+..| . +++|++|+| ++++..++.++++|||.|++++|+|+.+...+... |.+++.++
T Consensus 82 ~~G~~~l~~~l~~~la~~~g----~-~~~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~-~~~~~~~~ 154 (397)
T PRK06939 82 ICGTQDLHKELEEKLAKFLG----T-EDAILYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVRLC-KAKRYRYA 154 (397)
T ss_pred ccCCcHHHHHHHHHHHHHhC----C-CcEEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhc-CCceEEeC
Confidence 46888889888888887765 2 367888888 77899999999999999999999999998877766 88887776
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
. .|++++++.+++....+.++++|++.+.+||+|...+ +++|+++|++++++||+||+|+...+.... .
T Consensus 155 ~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~-~ 223 (397)
T PRK06939 155 N-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENG-R 223 (397)
T ss_pred C-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCC-C
Confidence 3 3788898888754333346777776667899998665 888999999999999999999632222211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-ccc--C-CCchHHHHHHHHhcCChhhHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSF--G-LVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~--~-~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
+...... ...+.+++++||||.++ |.|+||++++++.+ +.+... ..+ . ..++..+.++.+.++.. +.
T Consensus 224 ~~~~~~~---~~~~~~i~~~S~sK~~~--g~r~G~v~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~ 294 (397)
T PRK06939 224 GTVEHFG---VMDRVDIITGTLGKALG--GASGGYTAGRKEVI-DWLRQRSRPYLFSNSLAPAIVAASIKVLELL---EE 294 (397)
T ss_pred CHHHHcC---CCCCCcEEEEECHHHhC--ccCceEEEeCHHHH-HHHHHhCccccccCCCCHHHHHHHHHHHHHH---hc
Confidence 1111111 12345688999999994 55999999965544 444332 221 1 12233344443434221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEP 398 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~ 398 (477)
..+.+++++++++.+.+.|++.|+++.++.++++ ++.++... ...++.+.++++ ||.+.++. |.. .+.
T Consensus 295 -~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~ 364 (397)
T PRK06939 295 -SDELRDRLWENARYFREGMTAAGFTLGPGEHPII-PVMLGDAK------LAQEFADRLLEE-GVYVIGFS-FPVVPKGQ 364 (397)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEE-EEEECCHH------HHHHHHHHHHHC-CceEeeeC-CCCCCCCC
Confidence 2456778889999999999998887766666554 44444321 123577777776 99998643 432 234
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++|++++. .+++++++++++|++++++
T Consensus 365 ~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 365 ARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 689999976 5899999999999999876
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=246.75 Aligned_cols=297 Identities=15% Similarity=0.164 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~ 168 (477)
.++++++|++++ .+++++++|+++|+..++.+++++||.|+++.|+|+.+...++.. +.+.+.+.
T Consensus 86 ~~le~~ia~~~g----------~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~-~~~~~~~~---- 150 (393)
T TIGR01822 86 KELEAKIAAFLG----------TEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYA---- 150 (393)
T ss_pred HHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhc-CCceEEeC----
Confidence 899999999987 246788889999999999999999999999999999988877665 66655443
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
.+|++++++++++..+.+.++++|++.+++||||.+.+ +++|+++|+++|++||+||+|+.. +.+....+...
T Consensus 151 ---~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g-~~~~~~~~~~~ 223 (393)
T TIGR01822 151 ---NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATG-FLGPTGRGSHE 223 (393)
T ss_pred ---CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCcccc-CcCCCCCchHH
Confidence 26889999999865333447888888889999999988 888999999999999999999632 22222223222
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-ccc--C-CCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSF--G-LVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~--~-~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
... ...+.+++++|+||.+ +|+|+||++++++ +.+.++.. ..+ . +.++..+.++...+. +.+ ..++
T Consensus 224 ~~~---~~~~~di~~~s~sK~l--~g~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~---~~~-~~~~ 293 (393)
T TIGR01822 224 LCG---VMGRVDIITGTLGKAL--GGASGGFTTARKE-VVELLRQRSRPYLFSNSLPPAVVGASIKVLE---MLE-ASNE 293 (393)
T ss_pred hcC---CCCCCeEEEEEChHHh--hCCCcEEEEeCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHH---HHh-cCHH
Confidence 221 0224568899999987 4789999998654 44444332 222 1 123333334444442 211 2355
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEE
Q 011801 325 TSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFR 402 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~R 402 (477)
.+++++++++++.+.|++.|+++.++.+. ++++.+++.. ...++.+.++++ ||.+. +..|.. .+..++|
T Consensus 294 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~~~~~~------~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~iR 364 (393)
T TIGR01822 294 LRDRLWANTRYFRERMEAAGFDIKPADHP-IIPVMLYDAV------LAQRFARRLLEE-GIYVT-GFFYPVVPKGQARIR 364 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCHH------HHHHHHHHHHHC-CeeEe-eeCCCCCCCCCceEE
Confidence 67888999999999999888877655443 5555554321 123577777765 99997 555532 2335799
Q ss_pred EEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 403 VCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 403 l~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++++.. +++++++++++|++++++
T Consensus 365 is~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 365 VQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH
Confidence 998765 899999999999998764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=245.64 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=207.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..+++++++++++ .++.|++++|+++ +..++.+++++||.|+++.|+|+.+...++.. |.+++.++.
T Consensus 63 ~~~l~~~la~~~~---------~~~~i~~~~G~~~-~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-- 129 (360)
T TIGR00858 63 HEELEEELAEWKG---------TEAALLFSSGYLA-NVGVISALVGKGDLILSDALNHASLIDGCRLS-GARVRRYRH-- 129 (360)
T ss_pred HHHHHHHHHHHhC---------CCCEEEECchHHH-HHHHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEecC--
Confidence 4568888888875 2567888888655 44567788899999999999999998888776 998887763
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+|++++++.+++. .+.++++|++++++||||...+ +++|.++|+++|++||+||+|+...++... .+..
T Consensus 130 -----~d~~~l~~~~~~~--~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~ 198 (360)
T TIGR00858 130 -----NDVEHLERLLEKN--RGERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDG-RGTL 198 (360)
T ss_pred -----CCHHHHHHHHHHc--ccCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCC-CchH
Confidence 4788898888642 1135678888899999999888 788888999999999999999854444321 2222
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--C-CCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--G-LVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~-~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
.... .. ..+++++++||||.||++| ||++++++.+.........+ . ..++..+.++.+.++... ...+
T Consensus 199 ~~~~-~~-~~~~~i~i~s~sK~~~~~g---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----~~~~ 269 (360)
T TIGR00858 199 EHFG-LK-PEPVDIQVGTLSKALGSYG---AYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQ----EEPW 269 (360)
T ss_pred HhcC-CC-ccCCcEEEEechhhhhccC---cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh----hCHH
Confidence 2211 00 2367889999999999777 99998654433322222222 1 233444445555553221 1345
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEE
Q 011801 325 TSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRV 403 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl 403 (477)
.+++++++++++.+.|++.++.+.++ +++++|+.++... ...++++.+. ++||.+.++..+.. .+++++||
T Consensus 270 ~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~iRi 341 (360)
T TIGR00858 270 RREKLLALIARLRAGLEALGFTLMPS-CTPIVPVIIGDNA------SALALAEELQ-QQGIFVGAIRPPTVPAGTSRLRL 341 (360)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCC-CCCEEEEEeCCHH------HHHHHHHHHH-HCCeeEeeeCCCCCCCCCceEEE
Confidence 67889999999999999988876644 5679999987421 1235667665 45999998766542 23568999
Q ss_pred Eecc-CCHHHHHHHHHHHH
Q 011801 404 CFAN-MDDDTLQVALNRIA 421 (477)
Q Consensus 404 ~~~~-~~~e~l~~~l~~l~ 421 (477)
+++. .+++++++++++|+
T Consensus 342 s~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 342 TLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred EEcCCCCHHHHHHHHHhhC
Confidence 9985 38999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=242.08 Aligned_cols=335 Identities=15% Similarity=0.193 Sum_probs=219.2
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
..+|+|+.++++.+.+.+.+.++.... .....|.++ ...+|++++|++++. +.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~-~~~~l~~~la~~~~~----------~~~~~~ 61 (353)
T PLN02721 5 SRVVDLRSDTVTKPTDAMRAAMANAEV------------DDDVLGYDP-TALRLEEEMAKIFGK----------EAALFV 61 (353)
T ss_pred hhhhhhhcccccCCCHHHHHHHHhccC------------CCcccCCCH-HHHHHHHHHHHHhCC----------ceeEEe
Confidence 357899999999888888777765310 111223222 368999999999972 234555
Q ss_pred CChHHHHHHHHHHhcC-CCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC-CCe
Q 011801 118 GGATGANELIMFCLAN-PGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS-INI 192 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~-~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~-~~~ 192 (477)
+++++++..++.++++ +||.|++++|+|..... .+... |++++.++.+ .++.+|++++++++++....+ .++
T Consensus 62 ~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 138 (353)
T PLN02721 62 PSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLG-GVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTT 138 (353)
T ss_pred cCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhc-CceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcc
Confidence 5556667777777777 99999999999864443 34545 9999998875 356789999999987421111 378
Q ss_pred eEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 193 KGLIITNP-SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP-~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
++|+++++ +||||.+++.+++++|+++|+++|+++|+||+|....+.... .+...... ..+ .++.|+||.++
T Consensus 139 ~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~-~~~~~~~~----~~d--~~~~s~sK~l~ 211 (353)
T PLN02721 139 RLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALG-VPVHRLVK----AAD--SVSVCLSKGLG 211 (353)
T ss_pred eEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhC-CCHHHHhh----hCC--EEEEecccccC
Confidence 89999875 789999999999999999999999999999998621111011 22222222 223 34558999987
Q ss_pred CCCceEEE-EEeCCHHHHHHHHHhcc-cC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeE
Q 011801 272 LPGFRVGI-VYSFNDTVVNCGRKMSS-FG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINC 347 (477)
Q Consensus 272 ~~G~RvG~-i~~~~~~i~~~~~~~~~-~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~ 347 (477)
. ++|+ +++ ++.+...+..... +. ..+...+.+++.+..- +.+.++. ++..++++.+.+.|++. ++.+
T Consensus 212 ~---~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~ 282 (353)
T PLN02721 212 A---PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVAL----QENVPKL-EDDHKKAKLLAEGLNQIKGLRV 282 (353)
T ss_pred C---ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHhCCCcEE
Confidence 3 3676 455 4445444433332 21 1222222222222211 2223332 23355678899999887 6754
Q ss_pred -ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-cCCHHHHHHHHHHHHHHHh
Q 011801 348 -LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 348 -~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~l~~~l~~l~~~~~ 425 (477)
..+..++|+|++++.... .. ..++.+.+. ++||.++|+. ++++|++++ ..+++++++++++|++++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 283 NVAAVETNIVYFDITDGSR---IT-AEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred ecCCccceEEEEEccCCcc---cc-HHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 333334679999874210 11 124666665 6799999974 468999997 4599999999999998875
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-28 Score=240.28 Aligned_cols=300 Identities=17% Similarity=0.181 Sum_probs=207.2
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTG 157 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g 157 (477)
.|.+..+..++++.++++++ ++++++++|+++++..++.+++++||.|+++.|+|..+.. ..... |
T Consensus 27 ~~~~~~~~~~l~~~~a~~~g----------~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~-g 95 (338)
T cd06502 27 VYGEDPTTAKLEARAAELFG----------KEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLS-G 95 (338)
T ss_pred ccCCCHHHHHHHHHHHHHhC----------CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHHc-C
Confidence 45555567889999988875 4568888888899999999999999999999999875432 23334 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHH-hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQE-ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~-~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
++++.++.+ .+.+|++++++++++..+ ...++++|+++||+|| |.+++.+++++|+++|+++|+++|+||+|...
T Consensus 96 ~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~ 171 (338)
T cd06502 96 VKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLAN 171 (338)
T ss_pred ceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence 999988864 267999999998864211 1136889999999998 77779999999999999999999999998532
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhc
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASML 312 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L 312 (477)
...... .++..... ..+ +++.|+||.+|+|| |+++..++.+.+.++... .+ ..+++.++.++...|
T Consensus 172 ~~~~~~-~~~~~~~~----~~d--~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L 241 (338)
T cd06502 172 AAAALG-VALKTYKS----GVD--SVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAAL 241 (338)
T ss_pred HHHhcC-CCHHHHHh----cCC--EEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHh
Confidence 111111 13222211 223 46789999999887 554433544555444432 22 124567778888888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHH--HhcCeEEeCC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV--NDVKLNVSPG 390 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll--~~~gI~v~pg 390 (477)
++..+ .+..+++.+.++++.+.|++.|+.+.++.++ |+.++++.. .. .-..+.+.+. .+.|+.+.+.
T Consensus 242 ~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~v~~~~~---~~--~~~~l~~~l~~~~~~gi~~~~~ 310 (338)
T cd06502 242 ENDLW-----LRRLRHDHEMARRLAEALEELGGLESEVQTN-IVLLDPVEA---NA--VFVELSKEAIERRGEGVLFYAW 310 (338)
T ss_pred cCchH-----HHHHHHHHHHHHHHHHHHHhcCCCcccccCC-eEEEecCCc---cH--HHHHHHHHHHHhhhCCEEEEec
Confidence 76543 2333566666788999999988876666654 666666521 10 0012222222 2569998764
Q ss_pred CCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 391 SSFQCTEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
. .+++|++++.. ++++++++++++++
T Consensus 311 ~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 311 G------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred C------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 2 26899999865 89999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=230.71 Aligned_cols=347 Identities=18% Similarity=0.261 Sum_probs=255.3
Q ss_pred CCCCCCCcccccccccc--cccc----HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccC
Q 011801 31 FHPTQNPGGVIQLGLAE--NQLC----FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRG 104 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~--n~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g 104 (477)
|..+.+|+. |+|+++. |... ++-++++-+.-.. -.....|-+..|++++++++++.+- |
T Consensus 20 f~~D~R~~K-VNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~-----------~~~~k~Yl~i~G~~~f~~~~~~llF---G 84 (396)
T COG1448 20 FKADPRPNK-VNLGIGVYKDEDGKTPVLRAVKKAEKRLLE-----------QEKTKNYLPIEGLPEFLEAVQKLLF---G 84 (396)
T ss_pred HhcCCCcCe-eeeeeeeeeCCCCCcchhHHHHHHHHHhhc-----------cccccccCCcCCcHHHHHHHHHHhc---C
Confidence 555677766 9998874 3332 2333333332211 1234579999999999999999974 2
Q ss_pred CCCc-cCCCcEE--EeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 105 GRVT-FDPDRIV--MGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 105 ~~~~-~~~~~i~--~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
...+ ++.++|. =|.|+|+|+.+....+. .|..+|.+++|+|+.+...+... |.++..+|+....+-.+|.+.+.
T Consensus 85 ~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~a-Gl~v~~Y~Yyd~~~~~~df~~ml 163 (396)
T COG1448 85 ADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAA-GLEVETYPYYDAETKGLDFDGML 163 (396)
T ss_pred CCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhc-CCceeeeeccccccccccHHHHH
Confidence 1110 2334443 38899999999987763 46677999999999999988877 99999999866566679999999
Q ss_pred HHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC---CcccHHHhhhhccCC
Q 011801 180 AAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP---KFTSVAEVIQEMDCN 256 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~---~~~s~~~~~~~~~~~ 256 (477)
+.++++++. .-+++-.++|||||.-++.++|++|+++.++++.+.+.|-+|.++ +.. .-..+..++. .
T Consensus 164 a~L~~a~~~---~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF--~~GleeDa~~lR~~a~----~ 234 (396)
T COG1448 164 ADLKTAPEG---SVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGF--ADGLEEDAYALRLFAE----V 234 (396)
T ss_pred HHHHhCCCC---CEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhh--ccchHHHHHHHHHHHH----h
Confidence 999876432 223344567999999999999999999999999999999999974 432 1122222232 2
Q ss_pred CCcEEEEecCCcccCCCCceEEEE--EeCCHHHHHHH----H--HhcccCCCchHHHHHHHHhcCChhhHHH---HHHHH
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIV--YSFNDTVVNCG----R--KMSSFGLVSSQTQYLLASMLSDDEFVDN---FLVET 325 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i--~~~~~~i~~~~----~--~~~~~~~vs~~~q~~~~~~L~~~~~~~~---~~~~~ 325 (477)
..-+++..||||.||+.|-|+|.+ ++.+....... . .++.|.+++.-...+++.+|+++++... .+..+
T Consensus 235 ~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~M 314 (396)
T COG1448 235 GPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEM 314 (396)
T ss_pred CCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 233788999999999999999985 45554433221 1 1245565666788899999999876444 45567
Q ss_pred HHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 326 SKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
+.|+.+.|..|.+.|++. .+.+...+.|+|.+..+.. +-+.++.+++||.+... |
T Consensus 315 r~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~QV~rLree~~IY~v~s--------G-- 373 (396)
T COG1448 315 RQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQVDRLREEFGIYLVAS--------G-- 373 (396)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HHHHHHHHhccEEEecC--------C--
Confidence 899999999999999984 4778889999999886663 34677889999998642 2
Q ss_pred EEEeccCCHHHHHHHHHHHHHH
Q 011801 402 RVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 402 Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
|+|++.+++..++.+.++|.++
T Consensus 374 Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 374 RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred eeeeccCChhhHHHHHHHHHhh
Confidence 9999999999999999998875
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=244.84 Aligned_cols=294 Identities=16% Similarity=0.194 Sum_probs=212.4
Q ss_pred cHHHHHHHHHHHhcccCCCCcc-CCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccc----hHHHHhhhCCc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTF-DPDRIVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAA----FDRDLSWRTGV 158 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~-~~~~i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~----~~~~~~~~~g~ 158 (477)
+.++|+++|++++ . ++++|++|+|+|+++.+++.++ .++||.|++++|.|++ +...++.. |+
T Consensus 65 ~~~~r~~la~~~g--------~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLN--------APDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQT-GA 135 (401)
T ss_pred HHHHHHHHHHHcC--------CCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHh-CC
Confidence 6789999999987 3 6889999999999999999987 3789999999999865 34445555 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+++.++.+. ++.+|++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 136 ~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~ 204 (401)
T PRK10874 136 KVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF 204 (401)
T ss_pred EEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc
Confidence 999999863 567899999998854 7899999999999999998 77888889999999999999973212
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc---------------------c-
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS---------------------S- 296 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~---------------------~- 296 (477)
+ ..+.. .+..+++.|++|.+|.+| +||++++++.+.. +.... .
T Consensus 205 ---~-~~~~~--------~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (401)
T PRK10874 205 ---P-ADVQA--------LDIDFYAFSGHKLYGPTG--IGVLYGKSELLEA-MSPWQGGGKMLTEVSFDGFTPQSAPWRF 269 (401)
T ss_pred ---c-CCchh--------cCCCEEEEecccccCCCc--cEEEEEchHHHhc-CCCeecCCcceEeeccCccCCCCChhhc
Confidence 1 22221 134477899999998777 6999986554332 22110 0
Q ss_pred -cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHH
Q 011801 297 -FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 297 -~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
.++.+...+.++...+..-. +.-..+..+++++.++++.+.|+++ |+.+..+..+.++++.++.. .. .+
T Consensus 270 e~Gt~~~~~~~al~~al~~l~--~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~------~~-~~ 340 (401)
T PRK10874 270 EAGTPNVAGVIGLSAALEWLA--DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV------HH-SD 340 (401)
T ss_pred cCCCcCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc------CH-HH
Confidence 12234344555544443111 1112345667777778888899887 88777555555667676531 11 13
Q ss_pred HHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+ .+.++||.+++|..|.. ...+++|+|++.. ++++++.+++.|+++++.
T Consensus 341 ~~~-~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 341 LVT-LLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred HHH-HHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 444 44567999999987642 2357999999875 899999999999998865
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=242.92 Aligned_cols=292 Identities=17% Similarity=0.203 Sum_probs=208.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccc----hHHHHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAA----FDRDLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~ 159 (477)
+.++|+++|++++. -++++|++|+|+|+++.+++.++ .++||.|++++|.|++ +...++.. |++
T Consensus 62 ~~~~r~~la~~~g~-------~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~-g~~ 133 (398)
T TIGR03392 62 YELARQQVARFLNA-------PDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQT-GAK 133 (398)
T ss_pred HHHHHHHHHHHhCC-------CCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHc-CcE
Confidence 56799999999872 14789999999999999999887 4789999999999876 33444555 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++++. ++.+|++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 134 v~~v~~~~--~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~- 201 (398)
T TIGR03392 134 VVKLPIGA--DLLPDIRQLPELLTP------RTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG- 201 (398)
T ss_pred EEEEecCC--CCCcCHHHHHHHhcc------CceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC-
Confidence 99999864 467899999998854 7899999999999999998 77888999999999999999973211
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc---------------------c--
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS---------------------S-- 296 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~---------------------~-- 296 (477)
+ ..+.. .+..+++.|++|.+|.+| +||++.+++.+. .+.... .
T Consensus 202 --~-~~~~~--------~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 267 (398)
T TIGR03392 202 --P-PDVQA--------LDIDFYAFSGHKLYGPTG--IGVLYGKTELLE-AMPPWQGGGKMLSHVSFDGFIPQAVPHRFE 267 (398)
T ss_pred --C-CChhh--------cCCCEEEEecccccCCCc--eEEEEEcHHHHh-hCCCeecCCceEeeccccccccCCChhhcc
Confidence 1 22221 133467788899998665 999998665432 221110 0
Q ss_pred cCCCchHHHHHHHHhc---CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHH
Q 011801 297 FGLVSSQTQYLLASML---SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L---~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
.++.+.....++...+ .+.+ +++..++..+.++.+.+.|.++ |+.+..+..+.++++.++.. . .
T Consensus 268 ~GT~~~~~~~a~~~al~~l~~~g-----~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-~-----~- 335 (398)
T TIGR03392 268 AGTPNIAGVIGLSAALEWLTDID-----IAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-H-----H- 335 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-C-----H-
Confidence 1223333333333333 2222 2345566677778888888876 77766544455677766531 1 1
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.++.+.+ .++||.|++|+.|.. ..++++|+|++.. ++++++.+++.|++++++
T Consensus 336 ~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 336 SDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred HHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 1355554 567999999987642 1257999999775 899999999999998875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=240.66 Aligned_cols=341 Identities=14% Similarity=0.130 Sum_probs=232.3
Q ss_pred Cccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 37 PGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
..++|||+.+.. .+ +.+.+.+.+.+.-.. .+ .....|....|.+++++++++++.+..| .++.|
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~-----~~----~~~~~~~~~~g~~~l~~~l~~~l~~~~g-----~~~~i 97 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQ-----YG----VGAGAVRTIAGTLRLHEELEEKLAKFKK-----TEAAL 97 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHH-----cC----CCCCccCcccCCcHHHHHHHHHHHHHhC-----CCcEE
Confidence 467899987642 23 344454544432100 00 0123566778999999999999988765 24568
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++++| ++++..++.+++++||.|+++.|+|+.+...+... |.++..++ .+|++++++.+++.. ..++++
T Consensus 98 ~~~sG-~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~-g~~~~~~~-------~~d~~~l~~~l~~~~--~~~~~~ 166 (385)
T TIGR01825 98 VFQSG-FNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLT-KATKKIYK-------HADMDDLDRVLRENP--SYGKKL 166 (385)
T ss_pred EECcH-HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEeC-------CCCHHHHHHHHHhhc--cCCCeE
Confidence 88888 55677888889999999999999999887766655 88776654 367888888876532 236788
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++++||||.+.+ +++|.++|+++|+++|+||+|+...++........ ... ...+.+++++||||.+|++|
T Consensus 167 v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~---~~~~~~i~~~s~sK~~~~~g 239 (385)
T TIGR01825 167 IVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVH-HFG---LEDKVDIQVGTLSKAIGVVG 239 (385)
T ss_pred EEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHh-hcC---CCcCCcEEEEeccHHhhcCC
Confidence 888888999999988 78899999999999999999986555422211111 111 13467899999999998776
Q ss_pred ceEEEEEeCCHHHHHHHHHh-ccc--CC-CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKM-SSF--GL-VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~-~~~--~~-vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~ 350 (477)
||++++++ +.+.+... ..+ +. .++..|.++.+.++... +. .+..+++.++++++.+.|.+.|+++..+
T Consensus 240 ---G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 311 (385)
T TIGR01825 240 ---GYAAGHKE-LIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQ---RS-PELMERLWDNTRFFKAGLGKLGYDTGGS 311 (385)
T ss_pred ---CEEecCHH-HHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99988554 44444332 222 22 34456666666664321 11 2345566778899999999989888776
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.+. ++++.++... ...++++.++++ ||.+. +..|.. .+.+++|++++. .+++++++++++|++++++
T Consensus 312 ~~~-~~~~~~~~~~------~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 312 ETP-ITPVVIGDEK------AAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCC-EEEEEECCHH------HHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 654 5555554211 122577777776 99984 444542 234689998854 4999999999999999865
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=245.37 Aligned_cols=313 Identities=14% Similarity=0.172 Sum_probs=225.2
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
.|.+..++.+|++++|++++ .++.|++++|.+ ++..++.+++++||.|++...+|..+...+... |.++
T Consensus 149 ~yg~~~~~~~Lee~La~~~~---------~~~~i~~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls-~~~~ 217 (481)
T PLN02822 149 FYGTIDVHLDCETKIAKFLG---------TPDSILYSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLS-RSTI 217 (481)
T ss_pred cccCHHHHHHHHHHHHHHhC---------CCCEEEECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHc-CCeE
Confidence 36666778999999999997 367899998877 678899999999999998887777776666665 8888
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHh---CCCe-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEA---SINI-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~---~~~~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
+.++.+ |.+.++..+++..+. ..++ ++|++..++|++|.+.+ +++|+++|++||+++|+||+|+..
T Consensus 218 ~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~g 287 (481)
T PLN02822 218 VYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFG 287 (481)
T ss_pred EEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 888754 456666666544322 1345 67788888999999999 888999999999999999999855
Q ss_pred ccCCCCcccHHHhhhhccC-CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc---ccC-CCchHHHHHHHHh
Q 011801 237 VFSSPKFTSVAEVIQEMDC-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS---SFG-LVSSQTQYLLASM 311 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~-~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~---~~~-~vs~~~q~~~~~~ 311 (477)
+++... ..+.+... . ..+..++++||||.+|++| ||++++++ +.+..+... .|+ ..+++.|.++...
T Consensus 288 vlG~~G-~G~~e~~~---v~~~~~dii~~s~sKalg~~G---G~i~g~~~-ii~~~~~~~~~~~fsa~lPp~~~~Aa~~a 359 (481)
T PLN02822 288 VLGKSG-RGLSEHFG---VPIEKIDIITAAMGHALATEG---GFCTGSAR-VVDHQRLSSSGYVFSASLPPYLASAAITA 359 (481)
T ss_pred ccCCCC-CChHHHcC---CCCCCCeEEEecchhhhhhCC---eEEEcCHH-HHHHHHhcCCceeeccccCHHHHHHHHHH
Confidence 565322 22333221 1 1245688999999999999 99998655 444444322 222 1235566666666
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEe
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
|+.. +. ..+.+++++++++++.+.|.+. |+++..+.+++++++.++..... .+.....++++.+++++||.+.
T Consensus 360 L~~l---~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~ 435 (481)
T PLN02822 360 IDVL---ED-NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVV 435 (481)
T ss_pred HHHH---Hh-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEE
Confidence 6321 22 2456788999999999999987 88887777889999998642110 0001124688888878899999
Q ss_pred CC--CCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 389 PG--SSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 389 pg--~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|+ ..|... .+.++|++++. .+++++++++++|++++.+
T Consensus 436 ~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 436 VSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred eeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 77 444321 24589999865 4999999999999998865
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=242.25 Aligned_cols=343 Identities=18% Similarity=0.218 Sum_probs=230.6
Q ss_pred Cccccccccc------cc-cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 37 PGGVIQLGLA------EN-QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 37 ~~~~i~l~~~------~n-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
...+|+|+++ .+ +.+.+.+.+.+.+..... | ..-..|+...+..++++++|+|++
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~-~--------~sr~~~g~~~~~~ele~~lA~~~g--------- 160 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSAST-C--------SSRVDGGTTKLHRELEELVARFVG--------- 160 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCC-C--------ccccccCCcHHHHHHHHHHHHHhC---------
Confidence 4556777654 22 223456666666642110 0 112347767788999999999997
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh-
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA- 188 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~- 188 (477)
.++.|++++| ..++..++.+++++||.|++++|+|+.+...++.. |++++.++.+ |.+++++.+++....
T Consensus 161 ~~~ai~~~~G-~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~-Ga~v~~~~~~-------d~~~le~~l~~~i~~~ 231 (489)
T PLN02483 161 KPAAIVFGMG-YATNSTIIPALIGKGGLIISDSLNHNSIVNGARGS-GATIRVFQHN-------TPSHLEEVLREQIAEG 231 (489)
T ss_pred CCcEEEECCH-HHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHc-CCeEEEEeCC-------CHHHHHHHHHhhhhcc
Confidence 2567777776 45566778889999999999999999999888877 9999998843 467777777643211
Q ss_pred -----CCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEE
Q 011801 189 -----SINIKGLIITNP-SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262 (477)
Q Consensus 189 -----~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vii 262 (477)
.+..+.++++++ .|++|.+.+ +++|+++|+++|++||+||+|+...+ ++......+...- + ..+.+++
T Consensus 232 ~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~-G~~G~g~~~~~~v-~-~~~~dI~ 305 (489)
T PLN02483 232 QPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAV-GKTGRGVCELLGV-D-PADVDIM 305 (489)
T ss_pred ccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCcc-CCCCCchHHhcCC-C-cccCcEE
Confidence 122366666666 599999988 88899999999999999999984323 2221222222210 0 1356789
Q ss_pred EecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-c--cC-CCc-hHHHHHHHHh---cCChhhHHHHHHHHHHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-S--FG-LVS-SQTQYLLASM---LSDDEFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~--~~-~vs-~~~q~~~~~~---L~~~~~~~~~~~~~~~~l~~r~~ 334 (477)
++||||++|++| ||++++++ +.+.++... . ++ ..+ ...|.+++++ +.+.. .+...+.+++++++++
T Consensus 306 ~~SfSKs~g~~G---G~i~~~~~-li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g--~~~~~~~~~~l~~~~~ 379 (489)
T PLN02483 306 MGTFTKSFGSCG---GYIAGSKE-LIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG--TNRGAQKLAQIRENSN 379 (489)
T ss_pred EEecchhcccCc---eEEEcCHH-HHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc--ccchHHHHHHHHHHHH
Confidence 999999999887 99998554 555554432 1 22 122 3444433222 21211 1223455678999999
Q ss_pred HHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC--CCCCCEEEEEecc-CCHH
Q 011801 335 NFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ--CTEPGWFRVCFAN-MDDD 411 (477)
Q Consensus 335 ~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~--~~~~~~~Rl~~~~-~~~e 411 (477)
++.+.|++.|+.+..+.++..+|+.+....+ ..++++.+++ +||.+.| ..|. +...+++|+|++. .++|
T Consensus 380 ~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~~------~~~~~~~Ll~-~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~e 451 (489)
T PLN02483 380 FFRSELQKMGFEVLGDNDSPVMPIMLYNPAK------IPAFSRECLK-QNVAVVV-VGFPATPLLLARARICISASHSRE 451 (489)
T ss_pred HHHHHHHHCCCcccCCCCCCEEEEEECCHHH------HHHHHHHHHH-CCcEEee-eCCCCCCCCCceEEEEeCCCCCHH
Confidence 9999999999887766666677776543221 1247777775 5999997 4553 2334789999976 4999
Q ss_pred HHHHHHHHHHHHHhh
Q 011801 412 TLQVALNRIAAFVQQ 426 (477)
Q Consensus 412 ~l~~~l~~l~~~~~~ 426 (477)
++++++++|+++++.
T Consensus 452 dId~~l~~L~~~~~~ 466 (489)
T PLN02483 452 DLIKALEVISEVGDL 466 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998865
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=238.99 Aligned_cols=347 Identities=14% Similarity=0.120 Sum_probs=228.3
Q ss_pred ccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC
Q 011801 40 VIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG 119 (477)
Q Consensus 40 ~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G 119 (477)
.|+|.-++|.+++. +.+.+...... .+ ..| ......|....+.+++++.+++++.+..| .+...|++++
T Consensus 21 ~~~~~~~~~~~~~~-v~~a~~~~~~~-~~-~~g---~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~v~~~s- 89 (402)
T cd00378 21 TLELIASENFTSPA-VMEAMGSDLTN-KY-AEG---YPGKRYYGGCEYVDEIEDLAIERAKKLFG----AEYANVQPHS- 89 (402)
T ss_pred CeeeeccCCcCCHH-HHHHhcccccc-cc-cCC---CCCCcccCCchHHHHHHHHHHHHHHHHhC----CCceeeecCC-
Confidence 57787777777554 44444332100 00 001 01123465666778888877777666555 3445566555
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-----HhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCee
Q 011801 120 ATGANELIMFCLANPGDAFLVPSPYYAAFDRD-----LSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 120 ~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-----~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+++|+.+++.++.+|||.|+++.|+|+++... ++.. |.++..++++.+ +++.+|++++++++.+. +++
T Consensus 90 gt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~~~ 163 (402)
T cd00378 90 GSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSAS-GKLFESVPYGVDPETGLIDYDALEKMALEF-----KPK 163 (402)
T ss_pred cHHHHHHHHHHhcCCCCEEEEecCccCcccccccccccccc-ceeEEEecCCcCcccCCcCHHHHHHHHHhC-----CCC
Confidence 57999999999999999999999999876433 4444 877777776543 26899999999998642 688
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc-cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY-AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y-~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
+|++++|+||+ ..+ +++|+++|+++|+++|+|++| .++.+.+.....+. ...++++|+||.+
T Consensus 164 ~v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----------~~dv~~~s~sK~l-- 226 (402)
T cd00378 164 LIVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----------GADVVTTTTHKTL-- 226 (402)
T ss_pred EEEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----------CCcEEEeccccCC--
Confidence 89999998864 334 888999999999999999995 44434332111111 1126789999987
Q ss_pred CCceEEEEEeCCHHHHHHHHHhcc-cCC-Cch-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe-
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMSS-FGL-VSS-QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL- 348 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~~-~~~-vs~-~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~- 348 (477)
+|.|.||++++++.+.+.+.+... +.. .+. ..+.++...+.. ..+....+.+++++++++.+.+.|.+.|+.+.
T Consensus 227 ~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 304 (402)
T cd00378 227 RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKE--ALEPEFKAYAKQVVENAKALAEALKERGFKVVS 304 (402)
T ss_pred CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEee
Confidence 889999999977455555543322 211 121 222222222221 11223456677889999999999999998876
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC----CCCCCCCEEEEEeccC-----CHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS----FQCTEPGWFRVCFANM-----DDDTLQVALNR 419 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~----f~~~~~~~~Rl~~~~~-----~~e~l~~~l~~ 419 (477)
.+.+++++|++++.... .. +.+..+++++||.+.++.. ++...+.++|+++... ++++++.+++.
T Consensus 305 ~~~~~~~v~v~~~~~~~----~~--~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~ 378 (402)
T cd00378 305 GGTDNHLVLVDLRPKGI----TG--KAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADF 378 (402)
T ss_pred cCCCCeEEEEeCCccCC----CH--HHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHH
Confidence 45678999999984211 11 2334567788999986432 1111346899999653 58999999999
Q ss_pred HHHHHhhhh
Q 011801 420 IAAFVQQDK 428 (477)
Q Consensus 420 l~~~~~~~~ 428 (477)
|++++++..
T Consensus 379 l~~~~~~~~ 387 (402)
T cd00378 379 IARALKDAE 387 (402)
T ss_pred HHHHHhccc
Confidence 999887643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=222.57 Aligned_cols=321 Identities=19% Similarity=0.299 Sum_probs=215.2
Q ss_pred ccccc-CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHH-H-HHHHHh----cC--------CCCeEEEcC
Q 011801 78 DIAIF-QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGAN-E-LIMFCL----AN--------PGDAFLVPS 142 (477)
Q Consensus 78 ~~~~Y-~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al-~-~i~~~l----~~--------~Gd~vlv~~ 142 (477)
+..+| +...|+++.|+-.|+.++ +++++|++.+.++--+ + ++.+++ .+ +.-++|+|.
T Consensus 60 D~RNY~G~l~Gipe~r~l~a~llg--------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv 131 (425)
T PF12897_consen 60 DCRNYPGGLDGIPEARELFAELLG--------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV 131 (425)
T ss_dssp BTTSS-S-SS--HHHHHHHHHHHT--------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE
T ss_pred cccCCCCccCChHHHHHHHHHHhC--------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC
Confidence 56799 889999999999999998 7899999977655333 2 222332 11 124799999
Q ss_pred CCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC--CCCcccCCCHHHHHHHHHH-
Q 011801 143 PYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP--SNPLGTTLDRDTLKSLVSF- 219 (477)
Q Consensus 143 P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP--~NPtG~~~~~~~l~~l~~~- 219 (477)
|.|......++.. |++.++||+++++ +|.+.+++.+.+ ++.+|+++. .| +||||.++|.|..++++++
T Consensus 132 PGYDRHFai~E~~-Giemi~VpM~~dG---PDmD~Ve~LV~~----D~svKGiWc-VP~ySNPtG~tySde~vrrlA~m~ 202 (425)
T PF12897_consen 132 PGYDRHFAITEHF-GIEMIPVPMTEDG---PDMDMVEELVAE----DPSVKGIWC-VPKYSNPTGITYSDEVVRRLAAMK 202 (425)
T ss_dssp S--HHHHHHHHHC-T-EEEEEEEETTE---E-HHHHHHHTHT----STTEEEEEE--SSS-TTT-----HHHHHHHHHS-
T ss_pred CCchHHHHHHHhh-CcEEEecCCCCCC---CCHHHHHHHHhc----CCccceEEe-CCCccCCCCccCCHHHHHHHhcCC
Confidence 9999999999988 9999999998654 899999998764 568998654 45 8999999999999999997
Q ss_pred HHhcCeEEEeccccccccc-CCCC---cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc
Q 011801 220 INDKNIHLVCDEIYAATVF-SSPK---FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS 295 (477)
Q Consensus 220 ~~~~~~~lI~De~y~~~~~-~~~~---~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~ 295 (477)
....+..|+.|++|+-..+ +... ...+.+...+.| ++++++...|+||.- +||-+|+++.++.+.+....+.+.
T Consensus 203 ~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~~ 280 (425)
T PF12897_consen 203 TAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHLS 280 (425)
T ss_dssp -SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHH
T ss_pred cCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHhc
Confidence 4468999999999986545 2222 124555544433 789999999999987 699999999998887766655543
Q ss_pred ccC-CCchHHHHHHHHhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHhhC-----CC-eEecCCceEEEEeeccchhhcc
Q 011801 296 SFG-LVSSQTQYLLASMLSDDE-FVDNFLVETSKRLAKRHHNFTKGLEQV-----GI-NCLKSNAGLFFWMDLRHLLKEK 367 (477)
Q Consensus 296 ~~~-~vs~~~q~~~~~~L~~~~-~~~~~~~~~~~~l~~r~~~l~~~L~~~-----gi-~~~~~~~g~~~~~~l~~~~~~~ 367 (477)
.-. ...-+.|..-..++.|.+ -++.++++.++.|+-+.+.+.+.|++. |+ +|..|.||+|++++..++..
T Consensus 281 ~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~A-- 358 (425)
T PF12897_consen 281 VQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTA-- 358 (425)
T ss_dssp HH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-H--
T ss_pred CceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChH--
Confidence 222 245589999999999976 668899999999988888777777653 34 78899999999999986533
Q ss_pred CchHHHHHHHHHHHhcCeEEeC-CCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSP-GSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~p-g~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
...-.+.++.||.+.| |+.|... .+..|||+.+..+.++++.+++.+.-+++
T Consensus 359 ------krvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 359 ------KRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp ------HHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 2344567788999999 7776532 24589999998899999999999988775
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=233.78 Aligned_cols=299 Identities=14% Similarity=0.173 Sum_probs=204.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..++++++|++++ + +++++|+|+++++.+++.+++++||.|+++.++|......++.. |++++.++++.
T Consensus 46 ~~~l~~~la~~~g--------~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 114 (361)
T cd06452 46 IKDFHHDLAEFLG--------M--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERA-GLNVREVPNTG 114 (361)
T ss_pred HHHHHHHHHHHcC--------C--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhc-CCEEEEEecCC
Confidence 5799999999986 2 78999999999999999999999999999999877666666666 99999999876
Q ss_pred CCCcccCHHHHHHHHHHHHHh-CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 168 SNNFKITREALEAAYERAQEA-SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~-~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.++|.+|++++++++++..+. +.++++|++++|+||||...+ +++|+++|+++|+++|+|++|+. ...++ +.
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~---g~~~~-~~ 187 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTV---GRMPV-SG 187 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCccc---CCcCC-CH
Confidence 556899999999998753221 237899999999999999877 78888899999999999999972 22221 22
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCch----------HHHHHHHHhcCChh
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSS----------QTQYLLASMLSDDE 316 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~----------~~q~~~~~~L~~~~ 316 (477)
.+ .+..++++|+||.++ +|.|+||++++++.+ +.+.+...++.++. ..+..+...+.
T Consensus 188 ~~--------~~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--- 254 (361)
T cd06452 188 KE--------LGADFIVGSGHKSMA-ASAPIGVLATTEEWA-DIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP--- 254 (361)
T ss_pred HH--------cCCCEEEecCCcccc-CCCCeEEEEECHHHH-HHHhccccccccceeeeeccccCchHHHHHHHHHH---
Confidence 11 244588999999998 566999999965544 44433322211111 11222222221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec--CCceEEEEeeccchhhcc--CchHHHHHHHHHHHhcCeEEeCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK--SNAGLFFWMDLRHLLKEK--TLEGEIALWRTIVNDVKLNVSPGS 391 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~--~~~g~~~~~~l~~~~~~~--~~~~e~~l~~~ll~~~gI~v~pg~ 391 (477)
+..++++...+. .++.+++.+.|+++ |+++.. +...+|+.++.+...... ......++.+.+.+ +||.+..
T Consensus 255 ~~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~-- 330 (361)
T cd06452 255 HVKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGIK-- 330 (361)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEEc--
Confidence 112233333333 33447888999998 888762 233456667665211100 00001136666654 5998532
Q ss_pred CCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 392 SFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
....+++|++....++++++.+++.|+++.
T Consensus 331 ---~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 331 ---PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ---CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 123458999994458999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=237.17 Aligned_cols=339 Identities=14% Similarity=0.139 Sum_probs=219.2
Q ss_pred CCCCccccccccc--cccccH--HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQLCF--DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+++ +.+.+.+.+.-. ... +....+..++++++++++.+..+
T Consensus 35 d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~la~~l~~~~~----- 95 (396)
T PRK02627 35 DDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAA-------------KLI-HTSNLYYIEPQEELAEKLVELSG----- 95 (396)
T ss_pred eCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHh-------------hcc-ccccccCCHHHHHHHHHHHhhcC-----
Confidence 4456678898664 344543 556666555311 010 00111236788888888876543
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCC-------CeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCc----ccCHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPG-------DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNF----KITREA 177 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~G-------d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f----~i~~~~ 177 (477)
.+++++++|+++|++.+++.+...+ +.|++..++|.++........+.........+ ..++ ..|+++
T Consensus 96 -~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (396)
T PRK02627 96 -MDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEA 174 (396)
T ss_pred -CCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHH
Confidence 5799999999999999998764333 67999999998876554333232221111110 0111 127888
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~ 256 (477)
+++++.+ ++++|+++.++||+| .+++.+.+++|.++|+++|+++|+||+|.++.+.+.. .+.... . ..
T Consensus 175 l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~~~~-~---~~ 243 (396)
T PRK02627 175 LKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAYQHY-G---IE 243 (396)
T ss_pred HHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eeehhc-C---CC
Confidence 8888742 789999988899999 6889999999999999999999999999986554432 222111 1 12
Q ss_pred CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~ 334 (477)
++ +.||||.+| +|+|+||++++++ +.+.+.. .......++++|.++.+.|+..+. +++.++.++.....++
T Consensus 244 pd----i~t~sK~~~-~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~ 316 (396)
T PRK02627 244 PD----IMTLAKGLG-GGVPIGAVLAKEK-VADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRA 316 (396)
T ss_pred CC----EEEEcchhh-CCcccEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHH
Confidence 22 337999999 9999999999655 4444432 222234788899998888864321 2223333333333333
Q ss_pred HHHHHHhhCC-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-cCCHHH
Q 011801 335 NFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDT 412 (477)
Q Consensus 335 ~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~ 412 (477)
.+.+.+.+.+ +... ...|+++|++++. ...+++..++++ ||.+.|+. ++++|++++ ..++++
T Consensus 317 ~l~~~~~~~~~~~~~-~~~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~~~------~~~lRi~~~~~~~~~~ 380 (396)
T PRK02627 317 KLRELLEKYPGIKEV-RGLGLMIGIELDR--------PAAEIVKKALEK-GLLINVTG------DNVLRLLPPLIISKEE 380 (396)
T ss_pred HHHHHHHhCCCeeee-ccCcEEEEEEecC--------cHHHHHHHHHHC-CeEEeecC------CCEEEEECCcccCHHH
Confidence 3433333332 2222 2357899998831 123577777766 99999863 467999986 359999
Q ss_pred HHHHHHHHHHHHhh
Q 011801 413 LQVALNRIAAFVQQ 426 (477)
Q Consensus 413 l~~~l~~l~~~~~~ 426 (477)
+++++++|++++++
T Consensus 381 i~~~~~~l~~~l~~ 394 (396)
T PRK02627 381 IDEAVDRLEEVLKE 394 (396)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=235.12 Aligned_cols=298 Identities=13% Similarity=0.139 Sum_probs=206.6
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
...+|++++|++++ .++.|++++| ++|+..++..+.. +||.|+++.++|..+...++.. |.++..++
T Consensus 92 ~~~~Le~~la~~~g---------~~~~i~~~sG-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~-g~~~~~~~ 160 (410)
T PRK13392 92 PHVLLERELADLHG---------KESALLFTSG-YVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRS-GAEKQVFR 160 (410)
T ss_pred HHHHHHHHHHHHhC---------CCCEEEECcH-HHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHc-CCeEEEEe
Confidence 36799999999986 2466777777 4677777776653 8998888777777776666655 88876664
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
. + |.+.+++.+++.. ..++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...++.. ..
T Consensus 161 ~---~----d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~-g~ 227 (410)
T PRK13392 161 H---N----DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR-GG 227 (410)
T ss_pred C---C----CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC-CC
Confidence 2 1 4566766665431 237889999999999999999 88888889999999999999984334332 12
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc-c--C-CCchHHHHHHHHhcCChhhHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS-F--G-LVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~-~--~-~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.+..... ......++++||||.||++| ||+++++ .+.+.+++... + + ..++..+.++.+.|+..+.
T Consensus 228 g~~~~~~---~~~~~div~~tlsK~~g~~G---G~~~~~~-~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~--- 297 (410)
T PRK13392 228 GIAERDG---LMDRIDMIQGTLAKAFGCLG---GYIAASA-DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKT--- 297 (410)
T ss_pred chhhhcc---CCCCCcEEEEEChHhhhccc---chhhcCH-HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhc---
Confidence 2222111 01122377899999999998 9998854 45554544432 2 1 2344667777777754322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPG 399 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~ 399 (477)
....+++++++++++.+.|++.|+++.++.+++ +.+.++.. ....++++.+++++||.+.++..... .+.+
T Consensus 298 -~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~ 369 (410)
T PRK13392 298 -SQTERDAHQDRVAALKAKLNANGIPVMPSPSHI-VPVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTE 369 (410)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCE-EEEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCc
Confidence 233456788889999999999998877766654 33444321 11235777787778999998753322 2346
Q ss_pred EEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 400 WFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 400 ~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++|+++... ++++++.++++|+++.++
T Consensus 370 ~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 370 RLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 899999654 899999999999998765
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=232.52 Aligned_cols=337 Identities=14% Similarity=0.127 Sum_probs=217.4
Q ss_pred CCcccccccccccc-c-cHHHHHHHHHhCCCCcccccccccccccccccCCCCC----cHHHHHHHHHHHhcccCCCCcc
Q 011801 36 NPGGVIQLGLAENQ-L-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHG----LPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 36 ~~~~~i~l~~~~n~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~ 109 (477)
....+|||+.+++. + +++.+.+.+.+.-.. -+ . ....|....| ..+++++++++++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-----~~---~-~~~~~~~~~g~~~~~~~l~~~la~~~~--------- 98 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARR-----YG---A-GSGGSRLVTGNSPAHEALEEELAEWFG--------- 98 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHh-----cC---C-CCCCcCcccCCcHHHHHHHHHHHHHhC---------
Confidence 45678999988752 2 345555555442110 00 0 0011211223 3566666666654
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
.++.|++++ +++++..++..++++||.|+++.|+|+.+...+... |.+++.++. .|++++++.++.. .
T Consensus 99 ~~~~i~~~~-g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~i~~~---~ 166 (385)
T PRK05958 99 AERALLFSS-GYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS-RARVRRYPH-------NDVDALEALLAKW---R 166 (385)
T ss_pred CCcEEEECc-HHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhc-CCceEEeCC-------CCHHHHHHHHHhc---c
Confidence 245555555 556666777888999999999999999988877766 988888764 2688898888641 1
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
.+..++++.+++||+|...+ +++|+++|+++|+++|+||+|+...+.... ........ .+ ..+++++++|+||.
T Consensus 167 ~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g-~~~~~~~~-~~-~~~~~i~~~s~sK~ 240 (385)
T PRK05958 167 AGRALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQG-RGLAAEAG-LA-GEPDVILVGTLGKA 240 (385)
T ss_pred CCCeEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCC-CchHHhhC-CC-CCCceEEEEechhh
Confidence 13455566667899998877 888899999999999999999754443211 11111110 00 23577899999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHh-ccc--C-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKM-SSF--G-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~-~~~--~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
+|.+| ||++++++ +.+.+.+. ..+ . ..++..+.++.+.|+..+ .. .+..+++.++++++.+.|++.|+
T Consensus 241 ~~~~G---g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~---~~-~~~~~~~~~~~~~l~~~L~~~~~ 312 (385)
T PRK05958 241 LGSSG---AAVLGSET-LIDYLINRARPFIFTTALPPAQAAAARAALRILR---RE-PERRERLAALIARLRAGLRALGF 312 (385)
T ss_pred cccCC---cEEEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99777 99988544 44433322 122 1 133344444445554321 11 34567788888999999998888
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~ 423 (477)
++.++.+ .|+|+.++.. ....++++.+.+ .||.+.++..+. ..+++++||+++. .++++++.++++|+++
T Consensus 313 ~~~~~~~-~~~~~~~~~~------~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 313 QLMDSQS-AIQPLIVGDN------ERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred CcCCCCC-CEEEEEeCCH------HHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 8766655 5778887642 122357777764 599999865443 2235699999974 4899999999999875
Q ss_pred H
Q 011801 424 V 424 (477)
Q Consensus 424 ~ 424 (477)
+
T Consensus 385 ~ 385 (385)
T PRK05958 385 L 385 (385)
T ss_pred C
Confidence 3
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=228.54 Aligned_cols=295 Identities=15% Similarity=0.176 Sum_probs=207.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++.++++++ .++ +.+++++|+++++.+++.+++++||.|+++.++|.. +...++.. |++++.++
T Consensus 34 ~~~~~~~la~~~g--------~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 104 (356)
T cd06451 34 MDEILEGLRYVFQ--------TENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERY-GADVDVVE 104 (356)
T ss_pred HHHHHHHHHHHhc--------CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHh-CCCeEEee
Confidence 4577777777776 333 457889999999999999999999999999987765 44556666 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+. ++.+|++++++++++. ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+ ++..+ .
T Consensus 105 ~~~--~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~---~g~~~-~ 170 (356)
T cd06451 105 KPW--GEAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS---LGGEP-F 170 (356)
T ss_pred cCC--CCCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh---ccCcc-c
Confidence 864 4678999999988642 6889999999999999999 6678888889999999999986 33222 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH----hcc----------------c-CCCchH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----MSS----------------F-GLVSSQ 303 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----~~~----------------~-~~vs~~ 303 (477)
++. ..+..+++.|++|.++.| .++||++.+++.+.. +.. ... . ++.+..
T Consensus 171 ~~~--------~~~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 240 (356)
T cd06451 171 RMD--------EWGVDVAYTGSQKALGAP-PGLGPIAFSERALER-IKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVN 240 (356)
T ss_pred ccc--------ccCccEEEecCchhccCC-CCcceeEECHHHHHH-HHhcCCCCceeecHHHHHhhhcccCCCCCCChHH
Confidence 211 112335678999999844 469999997664433 321 100 1 112233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
.+.++.+++..- .+..+++..++.+++.+++.+.|.+.|+++..+. .+.++|+.++...+ ..++.+.+.
T Consensus 241 ~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~ 312 (356)
T cd06451 241 LLYALREALDLI--LEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVD------GDEVVRRLM 312 (356)
T ss_pred HHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCC------HHHHHHHHH
Confidence 334444444321 1223456667778888999999998888776422 34556777764321 124666665
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
++.||.+.+|..+ ..++++|++++.. +++++++++++|+++++
T Consensus 313 ~~~gI~~~~g~~~--~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 313 KRYNIEIAGGLGP--TAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HhCCEEEeccccc--ccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 5559999998753 3457999999765 89999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=235.52 Aligned_cols=295 Identities=17% Similarity=0.174 Sum_probs=212.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchH---HHHhhhCCcEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFD---RDLSWRTGVQI 160 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~ 160 (477)
..++|+.+|++++ .++++|++|+|+++++..++..+. ++||.|++..+.|+.+. ..++.. |+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~-g~~v 115 (381)
T PRK02948 45 LQVCRKTFAEMIG--------GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTV 115 (381)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhC-CCEE
Confidence 4678888888886 468899999999999999888875 57899999886666543 445555 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
..++++. ++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++++ |+.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~---~g~ 181 (381)
T PRK02948 116 TEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQT---FGK 181 (381)
T ss_pred EEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhh---ccc
Confidence 9999863 467899999988753 6789999999999999999 6788888999999999998765 432
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH------HhcccCCCchHHHHHHHHhcCC
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR------KMSSFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~------~~~~~~~vs~~~q~~~~~~L~~ 314 (477)
.+ ..+ . ..+..+++.|+||.+|.+| +|+++++++....... ....+++++.+.+.++..++..
T Consensus 182 ~~-~~~----~----~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~ 250 (381)
T PRK02948 182 LP-IDV----F----EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAEN 250 (381)
T ss_pred cc-cCc----c----cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHH
Confidence 22 111 1 2345678899999999888 8998886543100000 0012455777888888877764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE-----eeccchhhccCchHHHHHHHHHHHhcCeEEeC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW-----MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP 389 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~-----~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p 389 (477)
. .+++++.++++++.++++.+.|+++|+++.......+.. +.++. ... .++... +.++||.|++
T Consensus 251 ~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~------~~~-~~~~~~-l~~~gI~v~~ 319 (381)
T PRK02948 251 I---LKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG------IEG-QYTMLE-CNRRGIAIST 319 (381)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCC------CCH-HHHHHh-cccCCEEEEc
Confidence 2 234677788999999999999999887665432122221 12221 111 134444 4567999999
Q ss_pred CCCCCCC-----------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 390 GSSFQCT-----------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 390 g~~f~~~-----------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
|+.|... ..+++|+|++.. ++++++.+++.|++++++.
T Consensus 320 g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 320 GSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred hHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8864221 146899999865 8999999999999988654
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=226.03 Aligned_cols=296 Identities=16% Similarity=0.146 Sum_probs=202.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..+++++++++++ . ++ .++++++++++..++..++++||.|++++|+|+.+...++.. |+++++++.
T Consensus 48 ~~~l~~~la~~~~--------~-~~-~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~-- 114 (349)
T cd06454 48 HEELEEELAEFHG--------K-EA-ALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLS-GAKKRIFKH-- 114 (349)
T ss_pred HHHHHHHHHHHhC--------C-CC-EEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHc-CCceEEecC--
Confidence 4677777777764 2 23 455555577888888888899999999999999888777766 999887762
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+|.+.+++.+++.. +..+++++++++|+||||...+ +++|+++|+++|+++|+|++|+...+.... ....
T Consensus 115 -----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~-~~~~ 184 (349)
T cd06454 115 -----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHG-RGVE 184 (349)
T ss_pred -----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCC-CChh
Confidence 46788888887532 1236778888999999999887 788899999999999999999742232111 1111
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
..... ..+.+++++|+||.+|.+| ||++++++.+.........+ +.++.+.+.++...|... .. ...
T Consensus 185 ~~~~~---~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~ 254 (349)
T cd06454 185 EFGGL---TDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPE 254 (349)
T ss_pred hhccc---cccCcEEEeechhhhcccC---CEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHH
Confidence 11100 2356788999999998655 99988654433332222222 234555555555555332 11 345
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEE
Q 011801 325 TSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRV 403 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl 403 (477)
.+++++++++.+.+.|.+.|+.+..+.++.+.++.++... ...++.+.+.++ ||.++++.... ....+++|+
T Consensus 255 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi 327 (349)
T cd06454 255 RRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPA------KAVAFSDALLER-GIYVQAIRYPTVPRGTARLRI 327 (349)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCChH------HHHHHHHHHHhC-CceEEEecCCccCCCCCeEEE
Confidence 5778888999999999988887776655555555444211 122566666665 99998863221 112478999
Q ss_pred Eecc-CCHHHHHHHHHHHHHH
Q 011801 404 CFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 404 ~~~~-~~~e~l~~~l~~l~~~ 423 (477)
+++. .+++++++++++|+++
T Consensus 328 ~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 328 SLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEeCCCCHHHHHHHHHHHHHh
Confidence 9976 4999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=227.18 Aligned_cols=225 Identities=20% Similarity=0.293 Sum_probs=170.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~ 154 (477)
..+|+++ ....|++++|++.+ .+++++++|+++|+.+++.+++++||.|+++.|+|+++...+ ..
T Consensus 77 y~R~~~P-t~~~Le~~lA~leg----------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~ 145 (427)
T PRK07049 77 YSRFNHP-NSEIVEDRLAVYEG----------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN 145 (427)
T ss_pred ccCCCCc-CHHHHHHHHHHHhC----------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh
Confidence 3567655 36899999999986 456888899999999999999999999999999999997654 33
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh---cCeEEEecc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND---KNIHLVCDE 231 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~---~~~~lI~De 231 (477)
. |++++.++. ..|.+++++++++..+ ..++|+|++++|+||||.+++.+++.+|++.|.. +++++|+||
T Consensus 146 ~-Gi~~v~~~~------~~d~~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDe 217 (427)
T PRK07049 146 F-GVGAVGFAD------GLSEAAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDN 217 (427)
T ss_pred c-CcEEEEEeC------CCCHHHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEEC
Confidence 4 888777762 1467788877754321 1378999999999999999999999999988654 689999999
Q ss_pred cccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcc-c-CCCchHHHHHH
Q 011801 232 IYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSS-F-GLVSSQTQYLL 308 (477)
Q Consensus 232 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~-~-~~vs~~~q~~~ 308 (477)
+|....+.. ++ ..+..++++||||.+| .+|+|+||++++++ +.+.+++... + ..++++.|+++
T Consensus 218 ty~~~~~~~----pl---------~~g~divv~S~SK~~gG~~glr~G~vv~~~~-l~~~l~~~~~~~g~~ls~~~a~l~ 283 (427)
T PRK07049 218 TLLGPVFQK----PL---------EHGADLSVYSLTKYVGGHSDLVAGAVLGRKA-LIRQVRALRSAIGTQLDPHSCWML 283 (427)
T ss_pred CccccccCC----cc---------ccCCCEEEEcCceeecCCCCcEEEEEECCHH-HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 997542211 11 1234588899999999 79999999998654 5454444332 2 34788899988
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
...|+. +..+.++..++++.+.+.|+++
T Consensus 284 ~r~L~t-------l~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 284 GRSLET-------LVLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred HcCCCh-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 888864 2333455577888899999876
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=228.10 Aligned_cols=294 Identities=16% Similarity=0.202 Sum_probs=207.8
Q ss_pred CcHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccchH----HHHhhhCC
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAAFD----RDLSWRTG 157 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~----~~~~~~~g 157 (477)
++.++|+++|++++ .+ +++|++|+|+++++.+++.++ .++||.|+++++.|+... ..++.. |
T Consensus 63 ~~~~~r~~ia~~~~--------~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~-g 133 (403)
T TIGR01979 63 AYEAVREKVAKFIN--------AASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERT-G 133 (403)
T ss_pred HHHHHHHHHHHHhC--------cCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhc-C
Confidence 46799999999987 34 679999999999999998875 578999999999877533 344444 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
++++.++.+ .++.++++++++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..
T Consensus 134 ~~~~~v~~~--~~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g- 201 (403)
T TIGR01979 134 ATLKFIPLD--DDGTLDLDDLEKLLTE------KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVP- 201 (403)
T ss_pred cEEEEEecC--CCCCCCHHHHHHHhcc------CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcC-
Confidence 999999876 3467899999998864 7899999999999999999 788888999999999999999732
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc----------------------
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS---------------------- 295 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~---------------------- 295 (477)
..+ ..+. ..+..+++.|++|.+|.+| +|+++++++.+ +.+....
T Consensus 202 --~~~-~~~~--------~~~~d~~~~s~~K~~gp~G--~g~l~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 267 (403)
T TIGR01979 202 --HMP-VDVQ--------ALDCDFYVFSGHKMYGPTG--IGVLYGKEELL-EQMPPFLGGGEMIAEVSFEETTYNEAPHK 267 (403)
T ss_pred --ccc-cCcc--------ccCCCEEEEecccccCCCC--ceEEEEchHHH-hcCCCeecCCCceeecccCccccCCChhh
Confidence 111 1211 1244588899999998666 99999865533 2221100
Q ss_pred -ccCCCchHHHHHHHHhcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc----eEEEEeeccchhhccC
Q 011801 296 -SFGLVSSQTQYLLASMLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA----GLFFWMDLRHLLKEKT 368 (477)
Q Consensus 296 -~~~~vs~~~q~~~~~~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~----g~~~~~~l~~~~~~~~ 368 (477)
..++.+.....++...++. +.+ -.++..+++.+.++.+.+.|+++ |+++..+.. +.++.+.++.. .
T Consensus 268 ~~~gt~~~~~~~al~~al~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~-~--- 340 (403)
T TIGR01979 268 FEAGTPNIAGVIGLGAAIDY---LEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV-H--- 340 (403)
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc-C---
Confidence 0122333444444444421 111 13455677777888888888877 788775431 33555566531 1
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCC------CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQ------CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~------~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
. .++ ...+++.||.+++|+.|. ...++++||+++.. ++++++.+++.|+++++.
T Consensus 341 --~-~~~-~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 341 --P-HDV-GTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred --H-HHH-HHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 1 133 345667899999887442 12357999999865 899999999999987754
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=224.19 Aligned_cols=295 Identities=16% Similarity=0.199 Sum_probs=207.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC--cEEEeCChHHHHHHHHHHhcCCCCeEEEcCC-Cccc-hHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD--RIVMGGGATGANELIMFCLANPGDAFLVPSP-YYAA-FDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~--~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P-~y~~-~~~~~~~~~g~~~~~v 163 (477)
..++|+.++++++ ++++ .|++++|+++++..++..+..+||.+++..+ +|+. +...++.. |.+++.+
T Consensus 33 ~~~~~~~la~~~~--------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~-g~~~~~i 103 (355)
T TIGR03301 33 TDQVRDRLLALAG--------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYL-GIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHhc--------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHc-CCceEEE
Confidence 5688888888886 3333 6888999999999999999888888776555 4554 34455555 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+. ++.+|++++++++++ +.+++.+++++++||||...+ +++|+++|+++++++|+|++++ ++..+
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s---~g~~~- 170 (355)
T TIGR03301 104 NFSE--YEPPDLNRIEEALAA----DPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSS---FGAIP- 170 (355)
T ss_pred ecCC--CCCCCHHHHHHHHHh----CCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccc---cCCcc-
Confidence 8753 467899999998864 236778888999999999988 7889999999999999999876 33322
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHh------------------cccCCCchHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKM------------------SSFGLVSSQT 304 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~------------------~~~~~vs~~~ 304 (477)
.++. ..+..++++|++|.+ |.+| +||++++++.+....... ...++.+...
T Consensus 171 ~~~~--------~~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 240 (355)
T TIGR03301 171 IDIE--------ELDVDALIASANKCLEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHT 240 (355)
T ss_pred cchh--------hcCccEEEecCCcccccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHH
Confidence 2222 124557789999986 5556 799999766544322110 0112355566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC---CceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
+.++..++....- +..+++..++++++++++.+.|++.|+++..+ .++.++|+.++.... .. ..++.+.+ .
T Consensus 241 ~~a~~~al~~~~~-~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~l-~ 314 (355)
T TIGR03301 241 VYAFAQALEELEA-EGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPD---FD-FDDFYQEL-K 314 (355)
T ss_pred HHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCc---ch-HHHHHHHH-H
Confidence 6665555542110 11246667788889999999999888875533 245678888874210 11 12445554 5
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEec-cCCHHHHHHHHHHHHHH
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAF 423 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~l~~~l~~l~~~ 423 (477)
+.||.+.+|..+. .+++||++. ..++++++.+++.|+++
T Consensus 315 ~~gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 315 ERGFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred HCCEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 5699999987553 278999984 45899999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=227.97 Aligned_cols=330 Identities=14% Similarity=0.109 Sum_probs=209.1
Q ss_pred CCCccccccccc--cccccH--HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLCF--DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+....||+..+ .|.+++ +.+.+.+.+.-+... .....|++ .-..+|.++++++++
T Consensus 24 ~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---------~~~~~~~~-~~~~~l~~~la~~~g---------- 83 (379)
T TIGR00707 24 VNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV---------HVSNLYYT-EPQEELAEKLVEHSG---------- 83 (379)
T ss_pred CCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc---------ccccccCC-HHHHHHHHHHHhhCC----------
Confidence 344567898764 565543 455555544211000 01123432 224556666666553
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---C----CCCeEEEcCCCccchHHHHhhhCCcEEE----EEeccCCCCccc--CHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA---N----PGDAFLVPSPYYAAFDRDLSWRTGVQIV----PVHCDISNNFKI--TREA 177 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~---~----~Gd~vlv~~P~y~~~~~~~~~~~g~~~~----~v~~~~~~~f~i--~~~~ 177 (477)
.+++++++|+++|+..++..+. . +||+|++++|+|+++...+... +.... ..++..+..+.. |+++
T Consensus 84 ~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~ 162 (379)
T TIGR00707 84 ADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA-TGQPKYQKGFEPLVPGFSYAPYNDIES 162 (379)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh-cCChhhhccCCCCCCCceeeCCCCHHH
Confidence 3489999999999999987652 2 3799999999999877655544 33221 112221111111 7889
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~ 256 (477)
+++.+.+ ++++|+++.++||+|.. ++.+++++|.++|+++++++|+||+|.++.+.+.. .+... .. ..
T Consensus 163 l~~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~~~-~~---~~ 231 (379)
T TIGR00707 163 LKKAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAYEH-YG---IE 231 (379)
T ss_pred HHHHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhHHh-cC---CC
Confidence 9888764 68888886556677764 79999999999999999999999999876554431 22111 11 02
Q ss_pred CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~ 334 (477)
++ + .+|||.++ +|+|+||++++++ +.+.+... ......++++|.++.+.|+..+ . .+..++++++++
T Consensus 232 ~d-~---~t~sK~~~-~G~riG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~--~~~~~~~~~~~~ 300 (379)
T TIGR00707 232 PD-I---ITLAKGLG-GGVPIGATLAKEE-VAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---K--ERLLENVKEKGD 300 (379)
T ss_pred CC-E---EEEccccc-CCcccEEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--hhHHHHHHHHHH
Confidence 22 2 27899999 9999999999654 54444432 1222367888998887775211 0 123344555556
Q ss_pred HHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CC
Q 011801 335 NFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MD 409 (477)
Q Consensus 335 ~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~ 409 (477)
.+.+.|.+. ++... ...|+|+|++++.. ..++.+.+ .+.||.+.|+. ++++|++++. .+
T Consensus 301 ~~~~~l~~~~~~~~~~~~-~~~g~~~~~~~~~~--------~~~~~~~l-~~~Gv~v~~~~------~~~lRi~~~~~~t 364 (379)
T TIGR00707 301 YFKERLEELGKNYPNKEV-RGKGLMLGIELEAP--------CKDIVKKA-LEKGLLVNCAG------PKVLRFLPPLIIT 364 (379)
T ss_pred HHHHHHHHHHhhCCCCcc-ccCceEEEEEecCc--------HHHHHHHH-HHCCcEEeeCC------CCEEEEECCCcCC
Confidence 666655543 33222 23578999988631 12455554 45699999853 4789999865 59
Q ss_pred HHHHHHHHHHHHHH
Q 011801 410 DDTLQVALNRIAAF 423 (477)
Q Consensus 410 ~e~l~~~l~~l~~~ 423 (477)
++++++++++|+++
T Consensus 365 ~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 365 KEEIDEAVSALEEA 378 (379)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=220.94 Aligned_cols=297 Identities=14% Similarity=0.154 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDP--DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~--~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
..++|+.++++++ .++ +.|++|+|+|++++.++..+..+||.+++..+.+.+. ...++.. |.+++.+
T Consensus 37 ~~~~r~~la~l~~--------~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~-g~~~~~v 107 (363)
T TIGR02326 37 VEQIRQQLLALAT--------AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYL-GIPHHVV 107 (363)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEE
Confidence 4567788888876 344 4799999999999999999988998888776655433 3445555 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. +..+|++++++++++ +.+++++.+++++||||..++ +++|.++|+++|+++|+|++++ ++..+
T Consensus 108 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~~~- 174 (363)
T TIGR02326 108 DTGE--VEPPDVVEVEAILAA----DPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGGIP- 174 (363)
T ss_pred eCCC--CCCCCHHHHHHHHhh----CCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccCcc-
Confidence 8763 456899999998864 235678889999999999999 7899999999999999999886 44332
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHhc-------------------ccCCCchH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKMS-------------------SFGLVSSQ 303 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~~-------------------~~~~vs~~ 303 (477)
.++.+ .+..+++.|++|.+ |.+| +||++++++.+........ ...+.+..
T Consensus 175 ~~~~~--------~~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~ 244 (363)
T TIGR02326 175 IDIAE--------LHIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTH 244 (363)
T ss_pred cchhh--------cCccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHH
Confidence 23222 23447789999987 4445 7999997765543211000 01134556
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC---CceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
.+.++.+++..-.- +..+++..++++++++++.+.|++.|+.+..+ ..+..+|+.++... .++ ..++.+.+
T Consensus 245 ~~~al~~al~~l~~-~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~v~~~L- 318 (363)
T TIGR02326 245 VVHAFAQALLELEK-EGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDP---DYR-FADFYQRL- 318 (363)
T ss_pred HHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCC---CCC-HHHHHHHH-
Confidence 66665555543210 11245677889999999999999998876543 34556788877421 011 11355554
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHHHh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCF-ANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~-~~~~~e~l~~~l~~l~~~~~ 425 (477)
+++||.++||..+ .+++|||++ +..+.++++.++++|++++.
T Consensus 319 ~~~gi~v~~g~~~---~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 319 KEQGFVIYPGKVS---QVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HHCCEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 5669999999765 247899996 55699999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=226.16 Aligned_cols=293 Identities=17% Similarity=0.193 Sum_probs=205.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCccc----hHHHHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC----LANPGDAFLVPSPYYAA----FDRDLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~----l~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~ 159 (477)
..++|+++|++++. .++++|++|+|+|+++.+++.+ +.++||.|+++++.|++ +...++.. |++
T Consensus 69 ~~~~r~~la~~~~~-------~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~ 140 (406)
T PRK09295 69 MENVRKQAALFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARV-GAE 140 (406)
T ss_pred HHHHHHHHHHHcCc-------CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHc-CcE
Confidence 56899999999862 1578999999999999999876 45899999999988764 33444545 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++.+. ++.+|+++|++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+..
T Consensus 141 v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g--- 206 (406)
T PRK09295 141 LRVIPLNP--DGTLQLETLPALFDE------RTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVM--- 206 (406)
T ss_pred EEEEecCC--CCCCCHHHHHHhcCC------CcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccC---
Confidence 99998864 457899999988854 7899999999999999999 778888999999999999999732
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------------------------c
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------------------S 295 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------------------------~ 295 (477)
..+ ..+.+ .+..+++.|++|.+|.+| +||++.+++.+.. +... -
T Consensus 207 ~~~-~~~~~--------~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~r~ 274 (406)
T PRK09295 207 HHP-VDVQA--------LDCDFYVFSGHKLYGPTG--IGILYVKEALLQE-MPPWEGGGSMIATVSLTEGTTWAKAPWRF 274 (406)
T ss_pred ccc-cCchh--------cCCCEEEeehhhccCCCC--cEEEEEchHhHhh-CCCcccCCceeeeeecCCccccCCchhhc
Confidence 211 22221 234478899999988666 8999996654322 1100 0
Q ss_pred ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC--ceEEEEeeccchhhccCchHH
Q 011801 296 SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN--AGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 296 ~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~--~g~~~~~~l~~~~~~~~~~~e 372 (477)
..++.+.....++..+++--. +.-+++..+++++..+++.+.|.+. |+++..+. .+ .+.+.++.. . .
T Consensus 275 e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~-iv~~~~~~~-~-----~- 344 (406)
T PRK09295 275 EAGTPNTGGIIGLGAALDYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKH-H-----A- 344 (406)
T ss_pred CCCCccHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCce-EEEEEECCc-C-----H-
Confidence 012334444444444443211 1123455567777778888888877 67776542 44 344455531 1 1
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHHHHHHh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
.++.. .+++.||.++.|+.|.. ..++++|+|++.. +++|++.+++.|+++..
T Consensus 345 ~~~~~-~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 345 YDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHHH-HHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 13433 45788999999986642 1256899999876 88999999999988743
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=228.50 Aligned_cols=298 Identities=13% Similarity=0.126 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccc----hHHHHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAA----FDRDLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~ 159 (477)
+.++|+++|++++. -++++|++|+|+|+++..++..+ .++||.|+++.+.|+. +...++.. |++
T Consensus 78 ~~~~r~~la~~~~~-------~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~-g~~ 149 (424)
T PLN02855 78 YELARKKVAAFINA-------STSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKT-GAV 149 (424)
T ss_pred HHHHHHHHHHHcCC-------CCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHc-CCE
Confidence 56899999999872 13579999999999999998763 5789999999998765 33344545 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++++.. ..++++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+ ..
T Consensus 150 v~~v~~~~~--~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~---~g 215 (424)
T PLN02855 150 LKFVGLTPD--EVLDVEQLKELLSE------KTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQS---VP 215 (424)
T ss_pred EEEEecCCC--CCcCHHHHHHHhcc------CceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhh---cC
Confidence 999998643 35889999998864 7899999999999999999 6788889999999999999996 22
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-----------------------c
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-----------------------S 296 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-----------------------~ 296 (477)
..+ ..+. ..+..+++.|++|.+|.+| +||++++++.+.. +.... .
T Consensus 216 ~~~-~~~~--------~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~-~~p~~~g~~~~~~~~~~~~~~~~~~~r~e 283 (424)
T PLN02855 216 HMP-VDVQ--------TLGADFLVASSHKMCGPTG--IGFLWGKSDLLES-MPPFLGGGEMISDVFLDHSTYAPPPSRFE 283 (424)
T ss_pred CcC-CCch--------hcCCCEEEeecccccCCCc--cEEEEEchhhhhc-CCCEecCCCceeeeecCccccCCChhhcc
Confidence 222 2222 1233477899999887555 8999997654332 21110 0
Q ss_pred cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC------ceEEEEeeccchhhccCc
Q 011801 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN------AGLFFWMDLRHLLKEKTL 369 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~------~g~~~~~~l~~~~~~~~~ 369 (477)
.++.+.....++..+++.-. +..+++.+++..+..+++.+.|+++ |+++..+. .+.++.+.++.. .
T Consensus 284 ~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-~---- 356 (424)
T PLN02855 284 AGTPAIGEAIGLGAAIDYLS--EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-H---- 356 (424)
T ss_pred CCChHHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-C----
Confidence 11222233334444443110 1134566677777888888888877 77777432 124566666531 1
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 370 EGEIALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
. .++.+.|.+++||.++.|..|.. .-++++|+|++.. ++++++.+++.|+++++..+
T Consensus 357 -~-~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 357 -P-TDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred -H-HHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 13555555555999999876532 1246899999876 89999999999999987644
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=222.37 Aligned_cols=317 Identities=15% Similarity=0.132 Sum_probs=222.4
Q ss_pred ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHH
Q 011801 50 LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMF 129 (477)
Q Consensus 50 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~ 129 (477)
.++..+.+++...-+. ....|....+..++++++++++.+..|. +.+++++++|+|+|+|+.+++.
T Consensus 10 ~~~~~~~~~~~~~~n~------------~~~~y~~~~~~~~le~~~~~~~~~~~g~--~~~~~~~~~t~ggt~a~~~al~ 75 (345)
T cd06450 10 DPPALLLEMLTSAKNA------------IDFTWDESPAATEMEAEVVNWLAKLFGL--PSEDADGVFTSGGSESNLLALL 75 (345)
T ss_pred cHHHHHHHHHHHhcCC------------CCcccccCchhHHHHHHHHHHHHHHhCC--CCCCCCEEEeCChhHHHHHHHH
Confidence 3455666766654321 1234777788999999999999888773 2245689999999999999998
Q ss_pred HhcC------------C--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 130 CLAN------------P--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 130 ~l~~------------~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
++.. + ++.|+++.++|..+...+... |.+++.++++++ +.+|+++|++++++...++.++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~-g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v 152 (345)
T cd06450 76 AARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL-DVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMV 152 (345)
T ss_pred HHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHH-hcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEE
Confidence 8742 2 347888999999888888877 999999998753 4899999999998765566678889
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+.+ +++|.++|+++|+++++|++|+...+........ ... ..+...+..|++|.++ ++.
T Consensus 153 ~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~---~~~~d~~~~s~~K~l~-~p~ 222 (345)
T cd06450 153 VATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL---DFG---IERVDSISVDPHKYGL-VPL 222 (345)
T ss_pred EEecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH---hcC---ccccCEEEEchhHhhC-CCc
Confidence 99999999999866 8889999999999999999998654322111111 000 1133456679999775 777
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~g 353 (477)
++|+++.+ ...+.++..++.... +++..+++.+.++++.+.|.+. ++++.. +..+
T Consensus 223 g~g~~~~~------------------~~~~~~~l~~l~~~g-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 279 (345)
T cd06450 223 GCSAVLVR------------------ALKLWATLRRFGRDG-----YGEHIDRIVDLAKYLAELIRADPGFELLGEPNLS 279 (345)
T ss_pred chHHHHHH------------------HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcee
Confidence 88987663 444555555554433 4566677778888999999887 676654 4555
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-C-CHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-M-DDDTLQVALNRIAA 422 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~-~~e~l~~~l~~l~~ 422 (477)
+ +.+.++... ..... ..++.+.+. +.|+.+.++..+. .++++|+++.. . ++++++++++.|++
T Consensus 280 i-v~f~~~~~~-~~~~~-~~~i~~~L~-~~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 280 L-VCFRLKPSV-KLDEL-NYDLSDRLN-ERGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred E-EEEEECCcc-hhhHH-HHHHHHHHH-hcCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 4 444554310 00011 124555554 5566555554443 46799999986 3 89999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=222.21 Aligned_cols=293 Identities=16% Similarity=0.157 Sum_probs=200.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
...+|++.+|++++ .+.+++++|+++|+..++.++..+||.|++..+.|......++.. |+++++++.
T Consensus 100 ~~~~le~~la~~~g----------~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~-g~~~~~~~~- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTG----------FESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAA-GAQAHPFRH- 167 (407)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHC-CCeEEEecC-
Confidence 45788999999986 246788999999999999999999999999999888777666655 888776642
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|+++|++++++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...++ ....+.
T Consensus 168 ------~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g-~~g~g~ 232 (407)
T PRK07179 168 ------NDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHG-PQGAGL 232 (407)
T ss_pred ------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcC-CCCCch
Confidence 3789999988642 4678888999999999999 778888999999999999999743332 221222
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---cCC-CchHHHHHHHHhcCChhhHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---FGL-VSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---~~~-vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
.... +......+++.|+||.+| + |+||++++++ +.+.+..... +.. .++....++.+.++... ..
T Consensus 233 ~~~~---~~~~~vdi~~~S~sK~~g-~--~~G~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~----~~ 301 (407)
T PRK07179 233 VAEL---GLTSRVHFITASLAKAFA-G--RAGIITCPRE-LAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIE----SA 301 (407)
T ss_pred HHhc---CCCCCCCEEEeechHhhh-c--cCeEEEeCHH-HHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHh----cC
Confidence 2111 111223578899999996 2 6999998654 4444443321 221 12222222323332211 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC-CCCCCCCEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS-FQCTEPGWF 401 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~-f~~~~~~~~ 401 (477)
.+.+++++++++++.+.|.++|+++. +. +.++++.++... .. +.+...+.++||.+..-.. .....++++
T Consensus 302 ~~~~~~l~~~~~~l~~~L~~~g~~v~-~~-~~i~~l~~~~~~------~~-~~~~~~L~~~GI~~~~~~~p~~~~~~~~l 372 (407)
T PRK07179 302 DDRRARLHANARFLREGLSELGYNIR-SE-SQIIALETGSER------NT-EVLRDALEERNVFGAVFCAPATPKNRNLI 372 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC-CC-CCEEEEEeCCHH------HH-HHHHHHHHHCCceEeeecCCCCCCCCceE
Confidence 34567888999999999999888766 33 467788765311 11 2333445567997431110 011235789
Q ss_pred EEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
||+++.. +++++++++++|++++++
T Consensus 373 Ris~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 373 RLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 9999764 999999999999999876
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=218.56 Aligned_cols=301 Identities=15% Similarity=0.157 Sum_probs=205.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v~~ 165 (477)
..++|+.++++++ .+-+++.|++++|+++++..++..+..+||.|+++.++|.+. ...++.. |++++.+++
T Consensus 39 ~~~~~~~l~~l~~------~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~-g~~~~~i~~ 111 (368)
T PRK13479 39 TASVRAKLVAIAT------GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYL-GIAHVVLDT 111 (368)
T ss_pred HHHHHHHHHHHhC------CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHc-CCcEEEEEC
Confidence 5788888888876 111235688999999999999999999999999998877654 3555655 999999997
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+. ++.+|++++++++++ +.++++|++++|+||||...+ +++|.++|+++|+++|+|++++ |+..+ .+
T Consensus 112 ~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~---~g~~~-~~ 178 (368)
T PRK13479 112 GE--DEPPDAAEVEAALAA----DPRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSS---FGAIP-ID 178 (368)
T ss_pred CC--CCCCCHHHHHHHHHh----CCCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEcccc---cCCcc-cc
Confidence 63 456899999998864 236778999999999999999 7788888999999999997664 44332 22
Q ss_pred HHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHhcc------------------cCCCchHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKMSS------------------FGLVSSQTQY 306 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~~~------------------~~~vs~~~q~ 306 (477)
+.. .+..+++.|++|.+ |.+| +||++++++.+........+ ..+.+...+.
T Consensus 179 ~~~--------~~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 248 (368)
T PRK13479 179 IAE--------LGIDALISSANKCIEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVA 248 (368)
T ss_pred ccc--------cCceEEEecCccccccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHH
Confidence 221 13346778999975 6677 69999976554332211111 0134444444
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 307 ~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
++...+..-.- +..+++..+++.++++.+.+.|++.|+++..+. .+..+.+.++.. ...+. .++.+.+.+ .
T Consensus 249 ~l~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~l~~~L~~-~ 322 (368)
T PRK13479 249 AFYQALLELEE-EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPAD---PAYDF-KEFYERLKE-Q 322 (368)
T ss_pred HHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCC---CCcCH-HHHHHHHHH-C
Confidence 44444432110 112456667888999999999999998765332 111122223321 01111 246666654 5
Q ss_pred CeEEeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHHHhhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCF-ANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~-~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
||.|++|..+ ..+++|++. +..++++++.+++.|++++++.
T Consensus 323 gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 323 GFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred CEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999998644 246899985 6569999999999999998763
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=218.04 Aligned_cols=306 Identities=15% Similarity=0.162 Sum_probs=206.1
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
...++|+.+|++++ .+++++++|+++++.+++.+++++||.|+++.++|......++.. |++++.++.+
T Consensus 64 ~~~~l~~~lA~~~g----------~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v~~~ 132 (387)
T PRK09331 64 PIADFHEDLAEFLG----------MDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERA-GLNVREVPKT 132 (387)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCc
Confidence 47899999999987 246888999999999999999999999999999987776666766 9999999974
Q ss_pred CCCCcccCHHHHHHHHHHHH-HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQ-EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~-~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.+.++.+|++++++++++.. ..++++++|++++|+||||...+ +++|.++|+++|+++|+|++|+. +.-+ .+
T Consensus 133 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~---g~~~-~~ 205 (387)
T PRK09331 133 GYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTV---GRMP-VD 205 (387)
T ss_pred cCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCccc---CCcC-CC
Confidence 23467899999999997531 12347899999999999999888 88899999999999999999973 2211 12
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC------CCchHHHHHHHHhcCChhhHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG------LVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~------~vs~~~q~~~~~~L~~~~~~~ 319 (477)
... .+..+++.|++|+++ .+.|+||++++++.+....+...+|. ..++..+..+..++..-+...
T Consensus 206 ~~~--------~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~ 276 (387)
T PRK09331 206 GKK--------LGADFIVGSGHKSMA-ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVV 276 (387)
T ss_pred HHH--------cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHH
Confidence 211 234578899999998 56699999996654443323222111 000111111111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCeEec--CCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GINCLK--SNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQ 394 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~--~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~ 394 (477)
+.+. ..++..++.+++.+.|.++ |+++.. +....++.++.+..... .......++.+.| .++||...+.
T Consensus 277 ~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~~---- 350 (387)
T PRK09331 277 ERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEEL-KKRGIHGIKP---- 350 (387)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHH-HHcCceEEcc----
Confidence 2232 3344556677889999999 888773 22334566666621110 0001112355555 4669984332
Q ss_pred CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 395 CTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 395 ~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.....+|+.....++++++.+++.|++++++
T Consensus 351 -~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 351 -GATKEFKLSTYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred -CCceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 1244577777456999999999999998875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=223.88 Aligned_cols=333 Identities=14% Similarity=0.122 Sum_probs=216.9
Q ss_pred CCCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ .+.++ .+.+.+.+.+.-+. .+ .....|+...+ .+|.+.++++++ . .
T Consensus 39 d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~-----~~----~~~~~~~~~~~-~~la~~l~~~~~------~-~ 101 (398)
T PRK03244 39 DVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLAT-----LG----HVSNLFATEPQ-IALAERLVELLG------A-P 101 (398)
T ss_pred ECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHh-----cc----CccCccCCHHH-HHHHHHHHHhCC------C-C
Confidence 3445668888654 34443 35566655542110 00 00123544332 455555555543 1 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCCCcccCHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISNNFKITRE 176 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~f~i~~~ 176 (477)
+++++++++|+++|++.+++.+..+| +.|+..+++|+++........|.. +..++. .|++
T Consensus 102 ~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~ 174 (398)
T PRK03244 102 EGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVD 174 (398)
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHH
Confidence 35799999999999999998765566 567777889988754433222321 222221 2678
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccC
Q 011801 177 ALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDT-LKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~-l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~ 255 (477)
++++++.+ ++++|+++.++||+|.+++.++ +++|.++|+++|+++|+||+|.++...+..+ .. ... +.
T Consensus 175 ~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~-~~~---~~ 243 (398)
T PRK03244 175 ALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AH-QHD---GV 243 (398)
T ss_pred HHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hh-hhh---CC
Confidence 88887742 7889999988999999987665 9999999999999999999998754443322 11 111 11
Q ss_pred CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 011801 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRH 333 (477)
Q Consensus 256 ~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~ 333 (477)
.++ +.+|||.+| +|+|+||++++++ +.+.+.. .......++++|.++.+.|+.-+ + .+..++++++.
T Consensus 244 ~pD----i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~---~~~~~~~~~~~ 312 (398)
T PRK03244 244 TPD----VVTLAKGLG-GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIA--S---EGLLENAERLG 312 (398)
T ss_pred CCC----EEEEchhhh-CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHH
Confidence 233 238899999 9999999999665 4444432 22223477888888888875211 0 12234555666
Q ss_pred HHHHHHHhhCCCeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCH
Q 011801 334 HNFTKGLEQVGINC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDD 410 (477)
Q Consensus 334 ~~l~~~L~~~gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~ 410 (477)
+++.+.|++++... .....|+++|+.++.. ...++.+.++ ++||.+.|. .++.+|++++. .++
T Consensus 313 ~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~p~~~~t~ 378 (398)
T PRK03244 313 EQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR-EAGFLVNAV------APDVIRLAPPLIITD 378 (398)
T ss_pred HHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH-HCCeEEeec------CCCEEEEECCCcCCH
Confidence 77888888765421 1224678999998631 1124556665 459999874 24689999876 599
Q ss_pred HHHHHHHHHHHHHHhh
Q 011801 411 DTLQVALNRIAAFVQQ 426 (477)
Q Consensus 411 e~l~~~l~~l~~~~~~ 426 (477)
+++++++++|++++++
T Consensus 379 ~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 379 AQVDAFVAALPAILDA 394 (398)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999975
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=220.26 Aligned_cols=281 Identities=15% Similarity=0.163 Sum_probs=189.8
Q ss_pred CCcEEEeCChHHHHHHHHHHh----cCCCC----eEEEcCCCccchHHHHhhhCCcEEEEEec-cCCCCcc----cCHHH
Q 011801 111 PDRIVMGGGATGANELIMFCL----ANPGD----AFLVPSPYYAAFDRDLSWRTGVQIVPVHC-DISNNFK----ITREA 177 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l----~~~Gd----~vlv~~P~y~~~~~~~~~~~g~~~~~v~~-~~~~~f~----i~~~~ 177 (477)
.+++++++|+++|++.+++++ .++|| +|++.++.|+++........+.....-.. ....++. .|+++
T Consensus 88 ~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 167 (389)
T PRK01278 88 ADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEA 167 (389)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHH
Confidence 468999999999999998876 45676 89999999998876554432322111000 0011222 47889
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~ 256 (477)
+++++++ ++++|+++.++||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+..+. . +.. +..
T Consensus 168 l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~-~-~~~---~~~ 236 (389)
T PRK01278 168 LKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFA-H-EWA---GVT 236 (389)
T ss_pred HHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccee-e-ccc---CCC
Confidence 9888753 788888887778888 789999999999999999999999999998655543221 1 111 112
Q ss_pred CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHHHH
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRLAK 331 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~ 331 (477)
++ +.||||.++ +|+|+||++++++ +.+.+.... .....+++.|.++.+.|+ +.++ .+++.+..+++++
T Consensus 237 pd----i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~~~~~~~~~~l~~ 309 (389)
T PRK01278 237 PD----IMAVAKGIG-GGFPLGACLATEE-AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-LDNVQRMGLYLKQ 309 (389)
T ss_pred CC----EEEEehhcc-CCcceEEEEEcHH-HHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHH
Confidence 23 348999998 9999999999665 433332221 112367788888766664 2333 3445555556665
Q ss_pred HHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCH
Q 011801 332 RHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDD 410 (477)
Q Consensus 332 r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~ 410 (477)
+.+.+.+.+.+. +.... ..|+++|++++. + ..+++..++++ ||.+.|+. ++++|++++. .++
T Consensus 310 ~l~~l~~~~~~~-~~~v~-g~G~~~~i~~~~--~------~~~~~~~l~~~-GV~~~p~~------~~~lR~~p~~~~~~ 372 (389)
T PRK01278 310 KLEGLVDRFPDV-IEEVR-GKGLLLGLKCVV--P------NRDLVQALRDE-GLLTVGAG------DNVVRLLPPLIITE 372 (389)
T ss_pred HHHHHHhhCCCc-eeeEe-cccEEEEEEEec--C------HHHHHHHHHHC-CeEEeecC------CCEEEEeCCcccCH
Confidence 555443322111 22223 357888988752 1 23577777766 99999873 5789999864 599
Q ss_pred HHHHHHHHHHHHHHhh
Q 011801 411 DTLQVALNRIAAFVQQ 426 (477)
Q Consensus 411 e~l~~~l~~l~~~~~~ 426 (477)
+++++++++|++++++
T Consensus 373 ~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 373 EEIDEALERLERAAES 388 (389)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998864
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=220.62 Aligned_cols=290 Identities=17% Similarity=0.207 Sum_probs=197.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchH----HHHhhhCCcEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFD----RDLSWRTGVQI 160 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~ 160 (477)
..++|++++++++ .++++|++++|+++++..++.++ .+|||+|++++|.|++.. ..++.. |+++
T Consensus 62 ~~~l~~~ia~~~~--------~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~~ 132 (397)
T TIGR01976 62 VDDAREAVADLLN--------ADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERA-GAKV 132 (397)
T ss_pred HHHHHHHHHHHcC--------CCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhc-CCEE
Confidence 3588888888876 45667999999999999887775 689999999999887643 334445 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
+.++++.. ++.++++++++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|+++.. +
T Consensus 133 ~~~~~~~~-~~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~ 198 (397)
T TIGR01976 133 KWARVDEA-TGELHPDDLASLLSP------RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA----P 198 (397)
T ss_pred EEEecccc-CCCcCHHHHHHhcCC------CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc----c
Confidence 99987642 467899999998853 7899999999999999998 88888899999999999999852 1
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-cc-----------CCCchHH---H
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SF-----------GLVSSQT---Q 305 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~-----------~~vs~~~---q 305 (477)
.....+.+ .+..+++.|++|.+| .|+|+++++++.+. .+.... .+ ++.+... .
T Consensus 199 ~~~~~~~~--------~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 266 (397)
T TIGR01976 199 HGLIDVQA--------TGADFLTCSAYKFFG---PHMGILWGRPELLM-NLPPYKLTFSYDTGPERFELGTPQYELLAGV 266 (397)
T ss_pred ccCCCHHH--------cCCCEEEEechhhcC---CceEEEEEcHHHHh-hCCCccccCccCCCcchhcCCCCCHHHHHHH
Confidence 11122221 233466789999885 36999999665433 222211 11 1112111 2
Q ss_pred HHHHHhcCChh------h---HHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecC----CceEEEEeeccchhhccCchH
Q 011801 306 YLLASMLSDDE------F---VDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKS----NAGLFFWMDLRHLLKEKTLEG 371 (477)
Q Consensus 306 ~~~~~~L~~~~------~---~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~----~~g~~~~~~l~~~~~~~~~~~ 371 (477)
..+..++.+.+ . +..++++..++..+..+++.+.|++++ +++..+ ..+.++.+.++.. .
T Consensus 267 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 339 (397)
T TIGR01976 267 VAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL-P------ 339 (397)
T ss_pred HHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc-C------
Confidence 22223332211 0 011256667777788888999998874 777654 1234666665521 1
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCC---------CCCCEEEEEeccC-CHHHHHHHHHHH
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQC---------TEPGWFRVCFANM-DDDTLQVALNRI 420 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~---------~~~~~~Rl~~~~~-~~e~l~~~l~~l 420 (477)
..++.+.| .++||.|+.|+.|.. ...+++|||+... ++++++.+++.|
T Consensus 340 ~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 340 PQRVVRRL-ADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHHHH-HHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 11455555 556999998877641 1346899999765 899999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=219.72 Aligned_cols=289 Identities=17% Similarity=0.223 Sum_probs=200.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHHhcC---CCCeEEEcCCCccchH----HHHhhhCCc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFCLAN---PGDAFLVPSPYYAAFD----RDLSWRTGV 158 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~l~~---~Gd~vlv~~P~y~~~~----~~~~~~~g~ 158 (477)
...++|+.++++++ .+ +++|++|+|+++++.+++..+.. +||.|+++.+.|+... ..++.. |+
T Consensus 44 ~~~~~~~~la~~~~--------~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~-g~ 114 (373)
T cd06453 44 AYEAAREKVARFIN--------APSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERT-GA 114 (373)
T ss_pred HHHHHHHHHHHHhC--------CCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhc-Cc
Confidence 35688899999986 33 67999999999999999999877 8999999999998742 233344 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+++.++++ .++.+|++++++++.+ ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|+..
T Consensus 115 ~~~~v~~~--~~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~-- 181 (373)
T cd06453 115 KLKVVPVD--DDGQLDLEALEKLLTE------RTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAG-- 181 (373)
T ss_pred EEEEeecC--CCCCcCHHHHHHHhcC------CceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcC--
Confidence 99999886 3567999999998864 7899999999999999999 678888899999999999999732
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------------------c
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------------------F 297 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------------------~ 297 (477)
..+ ..+. ..+..+++.|++|.++. .++|+++++++.+.. +..... +
T Consensus 182 -~~~-~~~~--------~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (373)
T cd06453 182 -HMP-VDVQ--------DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEE-MPPYGGGGEMIEEVSFEETTYADLPHKF 248 (373)
T ss_pred -cee-eecc--------ccCCCEEEeccccccCC--CCcEEEEEchHHhhc-CCCeecCCCccccccccccccCCCcccc
Confidence 111 1111 11334667899999984 568999996654432 222110 1
Q ss_pred --CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC--ceEEEEeeccchhhccCchHH
Q 011801 298 --GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN--AGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 298 --~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~--~g~~~~~~l~~~~~~~~~~~e 372 (477)
++.+.....++...+..-. +.-+++..++.++.++++.+.|.++ |+++..+. .+.++++.++.. + .
T Consensus 249 ~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~- 319 (373)
T cd06453 249 EAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-H-----P- 319 (373)
T ss_pred CCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-C-----H-
Confidence 1222223333333332111 1123555666777888899999887 67766321 245667776531 1 1
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHH
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRI 420 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l 420 (477)
.++.+.+ .++||.+.+|..|.. ..++++|++++.. ++++++++++.|
T Consensus 320 ~~i~~~l-~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 320 HDVATIL-DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHHHHH-HHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 1344544 457999988875431 2357999999864 899999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=217.90 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=201.2
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~ 154 (477)
..+|+++ ...+|++++|++.+ . +..++++|+++|+.+++ .++++||.|+++.|.|++... .++.
T Consensus 46 y~r~~~p-t~~~le~~la~l~g--------~--~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~ 113 (366)
T PRK08247 46 YSRTGNP-TRGVLEQAIADLEG--------G--DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK 113 (366)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC--------C--CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc
Confidence 4456554 46899999999987 2 23477788889999876 577899999999999987433 3444
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |+++..++. .|++++++++++ ++++|++++|+||+|. ..++++|+++|+++|+++|+|++|+
T Consensus 114 ~-G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 114 W-NVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred c-CceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 5 999888774 278889888754 7899999999999765 4569999999999999999999996
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHh
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASM 311 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~ 311 (477)
...+.. ++ ..+..++++|+||.++- ++++.|+++++++.+...+...... ..+++..|+++...
T Consensus 177 ~~~~~~----p~---------~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~ 243 (366)
T PRK08247 177 TPVLQR----PL---------EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRG 243 (366)
T ss_pred cccccC----ch---------hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhc
Confidence 332211 11 12456899999999973 3579999998655555544433222 23567788887776
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeE--ecCCceEEEEeeccchhhccCchHHHHH---HHHHHHhcCe
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINC--LKSNAGLFFWMDLRHLLKEKTLEGEIAL---WRTIVNDVKL 385 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l---~~~ll~~~gI 385 (477)
|+.- ..+.++.+++++.+.+.|+++ ++.. .++.+|+|.| .+........+.+...+ +..+.....+
T Consensus 244 l~tl-------~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~slg~~~sl 315 (366)
T PRK08247 244 MKTL-------ALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAESLGGVESF 315 (366)
T ss_pred cCcH-------HHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccCCCCCceE
Confidence 6532 233445688889999999987 6653 4447888887 56421000000011111 1122233466
Q ss_pred EEeCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCT-----------EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~-----------~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.|++.++.. .++.+|++++. |+.+.+++.|.+++++
T Consensus 316 ~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 316 ITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred EECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 77788766431 24689999995 5677778888888764
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=216.65 Aligned_cols=300 Identities=14% Similarity=0.132 Sum_probs=201.0
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
.....+|++++|++++ .++.+++++| ++|+..++..+.. +++.|+.....|......++.. |.++..
T Consensus 90 ~~~~~~l~~~la~~~g---------~~~~~~~~sG-~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~-~~~~~~ 158 (407)
T PRK09064 90 NHYHVELERELADLHG---------KEAALVFTSG-YVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRS-RCEKHI 158 (407)
T ss_pred HHHHHHHHHHHHHHhC---------CCcEEEECcH-HHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHc-CCcEEE
Confidence 3346789999999885 2455665655 5687777776654 7776666655565555555544 777655
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++. .|++++++.++... ..++++|++++|+||+|.+.+ +++|.++|+++|+++|+||+|+..+|+...
T Consensus 159 ~~~-------~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g 226 (407)
T PRK09064 159 FRH-------NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRG 226 (407)
T ss_pred ECC-------CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCC
Confidence 542 26788888876321 136789999999999999998 888888899999999999999833344322
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cccC---CCchHHHHHHHHhcCChhhH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSFG---LVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~~---~vs~~~q~~~~~~L~~~~~~ 318 (477)
..+.+..+ ...+.+++++||||.+|++| ||++++++ +.+.++.. ..+. ..++..+.++.+.++ ++
T Consensus 227 -~g~~~~~~---~~~~~div~~t~sKa~g~~G---G~~~~~~~-~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~---~~ 295 (407)
T PRK09064 227 -GGIAERDG---LMDRIDIIEGTLAKAFGVMG---GYIAGSAA-LVDAVRSYAPGFIFTTSLPPAIAAAALASIR---HL 295 (407)
T ss_pred -CChHHhcC---CCCCCeEEEEecchhhhccC---ceEecCHH-HHHHHHHhCccccccCcCCHHHHHHHHHHHH---HH
Confidence 22222211 11234688899999999888 99988554 44444433 2221 234444555444443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TE 397 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~ 397 (477)
++. ...+++++++++++.+.|.+.|+++.++.+ .++++.++.. ....++.+.++++.||.|++...... .+
T Consensus 296 ~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~ 367 (407)
T PRK09064 296 KES-NEERERHQERAAKLKAALDAAGIPVMPNES-HIVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRG 367 (407)
T ss_pred hcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CEEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCC
Confidence 221 234567888899999999999988776554 5667766531 11235777777777999988653322 23
Q ss_pred CCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 398 PGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 398 ~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+++|++++.. ++++++.+++.|++++++
T Consensus 368 ~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 368 TERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999754 899999999999999865
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=214.43 Aligned_cols=302 Identities=15% Similarity=0.187 Sum_probs=212.2
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-----CC-CCeEEEcCCCccchHHH---HhhhC
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-----NP-GDAFLVPSPYYAAFDRD---LSWRT 156 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-----~~-Gd~vlv~~P~y~~~~~~---~~~~~ 156 (477)
.+.+.+++++++++... + . .++++|++|+|+++++.+++..+. ++ ++.|+++.+.|+.+... ++..
T Consensus 39 ~~~~~l~~a~~~~~~~~-~--~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~- 113 (382)
T TIGR03403 39 ATHPAIAEALDKLYKGI-N--A-RDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESL- 113 (382)
T ss_pred HHHHHHHHHHHHHHHHc-C--c-CCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHC-
Confidence 35678999999888532 1 1 268899999999999999998752 45 46899998777665433 4444
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|++++.++++. ++.+|++++++++++ +++++++++|+||||.+++ +++|.++|+++|+++|+|++++
T Consensus 114 G~~v~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~-- 180 (382)
T TIGR03403 114 GVEVTYLPINE--QGTITAEQVREAITE------KTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDAVQA-- 180 (382)
T ss_pred CCEEEEEecCC--CCCCCHHHHHHhccc------CCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEechhh--
Confidence 99999999864 457899999988864 6789999999999999999 6678888889999999999987
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHH---HHh--cccCCCchHHHHHHHH
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCG---RKM--SSFGLVSSQTQYLLAS 310 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~---~~~--~~~~~vs~~~q~~~~~ 310 (477)
+...+ ..+. ..+..+++.|++|.+|.+| +|+++..+..- .... ... ...++++...+.++..
T Consensus 181 -~g~~~-~~~~--------~~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~ 248 (382)
T TIGR03403 181 -IGKIP-VDVQ--------KAGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGE 248 (382)
T ss_pred -cCCCc-cCcc--------ccCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHH
Confidence 22211 1211 1123377889999988777 68887654321 0000 000 1134567777767766
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
.+.. ..++++...+++++.++++.++|.++ |+.+..+.. ..++.+.++.. + .+ ++... +.++||.
T Consensus 249 al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~-L~~~gI~ 317 (382)
T TIGR03403 249 AMRL---ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-E-----GE-AMLWD-LNKAGIA 317 (382)
T ss_pred HHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-C-----HH-HHHHh-hccCCEE
Confidence 6642 23346677788899999999999876 777775431 23555665521 1 11 34444 5677999
Q ss_pred EeCCCCCCCC-----------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 387 VSPGSSFQCT-----------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 387 v~pg~~f~~~-----------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
++.|+.|... ..+.+|+|++.. ++++++++++.|++++++.+
T Consensus 318 v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 318 ASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred EEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9988766311 126799999876 89999999999999887644
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=216.06 Aligned_cols=297 Identities=12% Similarity=0.104 Sum_probs=201.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
..+|++++|++++ .+ ..++++++++|+..++..+.. +|+.|+....+|......+... |+++..++.
T Consensus 92 ~~~Le~~la~~~g---------~~-~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~-g~~~~~~~~ 160 (402)
T TIGR01821 92 HVELEAELADLHG---------KE-SALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHS-GAEKFIFRH 160 (402)
T ss_pred HHHHHHHHHHHhC---------CC-eEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHc-CCeEEEECC
Confidence 5789999999986 12 345555558889988888765 6776666656666555555555 877655542
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.|.+++++.++... ..++++|++++|+||+|.+.+ +++|.++|+++|+++|+||+|+..+++.. ...
T Consensus 161 -------~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~-g~g 227 (402)
T TIGR01821 161 -------NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPR-GGG 227 (402)
T ss_pred -------CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCC-CCc
Confidence 26778888776421 125789999999999999998 88888999999999999999984334322 122
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhcCChhhHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
..+.. +...+.+++++||||.+|++| ||++++++ +.+.++... .+ ...++..+.++.+.|+..+ +.
T Consensus 228 ~~~~~---~~~~~~div~~t~sKa~g~~G---G~i~~~~~-~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~---~~ 297 (402)
T TIGR01821 228 IAERD---GLMHRIDIIEGTLAKAFGVVG---GYIAASRK-LIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLK---ES 297 (402)
T ss_pred cchhc---cCCCCCeEEEEechhhhccCC---ceeecCHH-HHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhh---cC
Confidence 21111 111234678899999999888 99988554 555444332 22 1245566666666664321 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCE
Q 011801 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGW 400 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~ 400 (477)
...++++.++++++.+.|++.|+++.++.+ .++.+.++.. ....++++.++++.||.+++...... .+..+
T Consensus 298 -~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~i~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~ 369 (402)
T TIGR01821 298 -QDLRRAHQENVKRLKNLLEALGIPVIPNPS-HIVPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTER 369 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCce
Confidence 334455667888899999998988776655 4666655421 11235777777777999988653322 23468
Q ss_pred EEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 401 FRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 401 ~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+|+++... ++++++++++.|++++++
T Consensus 370 lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 370 LRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999654 999999999999999865
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=214.88 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=162.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh----hhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS----WRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~----~~~g~~~~~ 162 (477)
-..+|++.+|++.+ .+.+++++|+++|+.+++.+++++||.|+++.|.|+.+...+. ...|++++.
T Consensus 77 t~~~LE~~lA~l~g----------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~ 146 (418)
T PLN02242 77 TVLNLGRQMAALEG----------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF 146 (418)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence 46899999999886 3567899999999999999999999999999999988866542 113777776
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |++++++++++. ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|..+.+..
T Consensus 147 ~d~~-------d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~-- 209 (418)
T PLN02242 147 VDIT-------DLEAVKKAVVPG-----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP-- 209 (418)
T ss_pred cCCC-------CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH--
Confidence 6542 688888887531 4899999999999999987 8889999999999999999997543311
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCHHHHHHHHHhcc----cCCCchHHHHHHHHhcCChhh
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFNDTVVNCGRKMSS----FGLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~~i~~~~~~~~~----~~~vs~~~q~~~~~~L~~~~~ 317 (477)
.. .+..++++||||.++.+|.+ .||++++++.+ ..++.... ....+...|.+...++....
T Consensus 210 ----~~--------~g~divv~S~SK~l~g~g~~~gG~iv~~~~li-~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~t- 275 (418)
T PLN02242 210 ----AR--------LGADVVVHSISKFISGGADIIAGAVCGPAELV-NSMMDLHHGALMLLGPTMNPKVAFELSERLPH- 275 (418)
T ss_pred ----HH--------cCCcEEEEeCccccCCCCCceEEEEEcCHHHH-HHHHHHhhhhhhccCCCCCHHHHHHHHcCCCc-
Confidence 11 13458899999999988987 58888865543 43443311 22234445666555555432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
+..+.+++.++++.+.+.|+++++++..
T Consensus 276 ----l~~r~~~~~~~a~~la~~L~~~~~~V~y 303 (418)
T PLN02242 276 ----LSLRMKEHCRRAMEYAKRMKELGLKVIY 303 (418)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCEEEC
Confidence 3445567888999999999998877663
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=219.39 Aligned_cols=346 Identities=14% Similarity=0.090 Sum_probs=212.9
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .+.+. .+.+.+.+.+.- .....|+...+..++...+++.+.+..+ .+
T Consensus 33 ~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~ 95 (413)
T cd00610 33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL-------------AKLTHFSLGFFYNEPAVELAELLLALTP----EG 95 (413)
T ss_pred CCCCEEEEcCccHHhhccCCCCHHHHHHHHHHH-------------HhCcCccCcccCCHHHHHHHHHHHHhCC----CC
Confidence 445678999765 44443 455555554421 1223444432344555555555554433 35
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCC----CCcc
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDIS----NNFK 172 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~----~~f~ 172 (477)
++++++++|+++|++.++..+. .+++.|++.+|+|++.........+ .+++.++.+.. ..+.
T Consensus 96 ~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (413)
T cd00610 96 LDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELA 175 (413)
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHH
Confidence 7899999999999999998763 5789999999999986544332212 23455554311 1245
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNP-SNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~ 250 (477)
.|+++|++++++. ..++++ ++++| +|++|.++ +.+.+++|.++|+++++++|+||+|.++...+.. .. .+..
T Consensus 176 ~d~~~l~~~l~~~---~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~-~~-~~~~ 249 (413)
T cd00610 176 DDLEALEEALEEH---PEEVAA-VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM-FA-FEHF 249 (413)
T ss_pred HHHHHHHHHHhcC---CCCEEE-EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcch-hh-Hhhc
Confidence 5788888887642 124555 44555 56779876 6777999999999999999999999874333321 11 1111
Q ss_pred hhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH--HHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG--RKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 251 ~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~--~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
. ..++ +.|+||.++ .|+|+||++++++ +.+.+ .... .....++++|.++.+.|+.- ++ .+..
T Consensus 250 ~---~~~d----~~t~sK~l~-~g~~~g~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~ 315 (413)
T cd00610 250 G---VEPD----IVTLGKGLG-GGLPLGAVLGREE-IMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLL 315 (413)
T ss_pred C---CCCC----eEEEccccc-CccccEEEEEcHH-HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHH
Confidence 1 0122 458999999 5899999998554 44443 2221 12235667777766665321 11 1234
Q ss_pred HHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 327 KRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
++++++.+.+.+.|++. ++.......|.++|+.++..... .......++++.++ ++||.+.|+. ++.
T Consensus 316 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~------~~~ 388 (413)
T cd00610 316 ENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG------GNV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC------CCE
Confidence 45555556666666544 22222234568888888642100 00012234666655 4599999974 467
Q ss_pred EEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 401 FRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 401 ~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
+|++++.. +++++++++++|++++
T Consensus 389 lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 389 IRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhC
Confidence 99998764 8999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=215.70 Aligned_cols=285 Identities=15% Similarity=0.168 Sum_probs=188.1
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-----HhhhCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-----LSWRTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-----~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
.++++|++++| ++|+..++.++++|||.|+++.|+|+++... +... |++++.++++. +++.+|+++++++++
T Consensus 86 ~~~~~i~~~sg-t~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~i~ 162 (416)
T PRK00011 86 AEYANVQPHSG-SQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGK-LYNVVSYGVDE-ETGLIDYDEVEKLAL 162 (416)
T ss_pred CCceeeecCCc-hHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccc-eeeEeecCcCc-ccCCcCHHHHHHHHH
Confidence 34556766665 6799999999999999999999999865321 1222 67788777763 357899999999986
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-cccCCCCcccHHHhhhhccCCCCcEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVFSSPKFTSVAEVIQEMDCNRDLIHI 262 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~vii 262 (477)
+. ++++|++++++|| ...+ +++|.++|+++|+++|+|++|+. ..+.+.....+ . ...++
T Consensus 163 ~~-----~~k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~---------~-~~di~ 222 (416)
T PRK00011 163 EH-----KPKLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPV---------P-HADVV 222 (416)
T ss_pred hc-----CCCEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCC---------C-CCcEE
Confidence 42 6788888766554 4455 78889999999999999999852 21211111110 1 22477
Q ss_pred EecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCc-h--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVS-S--QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs-~--~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
++|+||.+ +|.|.||++++++.+.+.+++....+..+ + ..+.++...+. ...+..+.+..++++++++++.+.
T Consensus 223 ~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~ 298 (416)
T PRK00011 223 TTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFK--EALEPEFKEYAQQVVKNAKALAEA 298 (416)
T ss_pred EecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 89999976 78999999997666666665443322221 1 12222111111 111234566778889999999999
Q ss_pred HhhCCCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCC-CCC---CCCCCEEEEEec-----cCC
Q 011801 340 LEQVGINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS-SFQ---CTEPGWFRVCFA-----NMD 409 (477)
Q Consensus 340 L~~~gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~-~f~---~~~~~~~Rl~~~-----~~~ 409 (477)
|++.|+++.. ...++++|+.+++. .+.. .++.+ .+++.||.+..+. .++ +..+..+|++.. +++
T Consensus 299 L~~~g~~~~~~~~~~~~~~i~~~~~----~~~~-~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t 372 (416)
T PRK00011 299 LAERGFRVVSGGTDNHLVLVDLRSK----GLTG-KEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFK 372 (416)
T ss_pred HHhCCCeeeecCCCCeEEEEeCccc----CCCH-HHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcC
Confidence 9999987764 12348899998632 1111 13444 5567799997432 121 112457999651 357
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011801 410 DDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 410 ~e~l~~~l~~l~~~~~~ 426 (477)
+++++.+++.|++++.+
T Consensus 373 ~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 373 EAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999999875
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=213.59 Aligned_cols=309 Identities=13% Similarity=0.105 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
+..++++++++.+.+..| .++ +.+++++|++++++.++..+.++||+|+++++.|.+. ...++.. |++++.+
T Consensus 39 ~~~~~~~~~~~~l~~~~g----~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~-g~~v~~v 113 (401)
T PLN02409 39 AFPALTKELLEDVKYIFK----TKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRL-NFDVDVV 113 (401)
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHc-CCceEEE
Confidence 456777777777776655 333 4688899999999999999999999999999888654 3455655 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+.+ ..++++++++++++. .+.++|+|++++++||||.+++.+++.++++ |+++|+++|+|++++ +...+
T Consensus 114 ~~~~~--~~~~~~~l~~~l~~~--~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s---~g~~~- 184 (401)
T PLN02409 114 ESPWG--QGADLDILKSKLRQD--TNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSS---IGALD- 184 (401)
T ss_pred ECCCC--CCCCHHHHHHHHhhC--cCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccc---cCCcc-
Confidence 97643 347899999988741 0127899999999999999999766666666 999999999999987 32221
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-c----------------c--cCCCchHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-S----------------S--FGLVSSQT 304 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~----------------~--~~~vs~~~ 304 (477)
..+. ..+..+++.|.+|.++.|. ++||++.+++.+....... . . .++.+...
T Consensus 185 id~~--------~~~~D~~~~s~~K~l~~P~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~ 255 (401)
T PLN02409 185 FRMD--------EWGVDVALTGSQKALSLPT-GLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQL 255 (401)
T ss_pred cccc--------ccCccEEEEcCccccCcCC-CcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHH
Confidence 1111 2244577788899997443 7999999766543322100 0 0 11233345
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
+.++...++.- .+.-+++.++++++..+++.+.|++.|+++..+. .+..+|+.++...+. .++.+.++
T Consensus 256 ~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~------~~l~~~l~ 327 (401)
T PLN02409 256 LYGLRAALDLI--FEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDS------AEIVKNAW 327 (401)
T ss_pred HHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCH------HHHHHHHH
Confidence 55555555421 1334667778888999999999998898876542 223467777744332 24667788
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+++||.+.+|.. ....+.|||+... .+++++..++.+|.+++.+..
T Consensus 328 ~~~~i~i~~G~~--~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 328 KKYNLSLGLGLN--KVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred HhCCEEEEcCCC--cccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 889999998853 3245789999865 489999999999999997643
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=212.43 Aligned_cols=294 Identities=16% Similarity=0.185 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCccchHHH---HhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPGDAFLVPSPYYAAFDRD---LSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~ 161 (477)
+.++|+.++++++ .++++|++|+|+|+++.+++.++. .+||.|++....|+.+... ++.. |++++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~-G~~v~ 114 (379)
T TIGR03402 44 VEEAREQVAKLLG--------AEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQ-GYKVT 114 (379)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHc-CCEEE
Confidence 4577788888876 568899999999999999988763 4568899988888776533 3334 99999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++. ++.+|++++++++++ +++++++++++||||.+++ +++|.++|+++|+++|+|++++ ++..
T Consensus 115 ~v~~~~--~g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~---~g~~ 180 (379)
T TIGR03402 115 YLPVDE--EGRLDLEELRAAITD------DTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQA---VGKI 180 (379)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECccc---cccc
Confidence 998763 457899999998854 7889999999999999999 6678889999999999999997 3221
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-HH-----HHhcccCCCchHHHHHHHHhcCCh
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN-CG-----RKMSSFGLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~-~~-----~~~~~~~~vs~~~q~~~~~~L~~~ 315 (477)
+ ..+. ..+..+++.|.+|.+|.+| +|+++..++.... .. ......++.+.....++.+.++
T Consensus 181 ~-~~~~--------~~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~-- 247 (379)
T TIGR03402 181 P-IDLK--------EMNIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAE-- 247 (379)
T ss_pred c-cCcc--------cCCCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHH--
Confidence 1 2211 1233467778889777555 8888875542100 00 0001123334333344444442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeEecCC-----ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
+..+++++..+++++.++.+.+.|.+ + ++.+..+. +...+|++... . .++.. .++++||.++
T Consensus 248 -~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~-~l~~~gI~v~ 316 (379)
T TIGR03402 248 -LATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE---G------EAILL-LLDMEGICAS 316 (379)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC---H------HHHHH-hhccCCEEEE
Confidence 22344566667788888888888875 4 66655432 23445654331 1 13444 4567799999
Q ss_pred CCCCCCCC-----------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 389 PGSSFQCT-----------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 389 pg~~f~~~-----------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
+|+.|... .++.+|+|++.. ++++++.+++.|++++++.+
T Consensus 317 ~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 317 SGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred chhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99877543 147899999876 89999999999999887643
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=209.53 Aligned_cols=289 Identities=12% Similarity=0.139 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc------CCCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA------NPGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~------~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
.++++.+|++++ .+++++++++|+++++..++.++. ++||.|+++.++|..+...++.. |++++.
T Consensus 62 ~~~~~~la~~~g--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~-G~~~~~ 132 (373)
T TIGR03812 62 EEVVGSLGNLLH--------LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEML-GLELRY 132 (373)
T ss_pred HHHHHHHHHHhC--------CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHc-CCeEEE
Confidence 456666666665 567788999999999988876653 47799999999999998888877 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC--C
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS--S 240 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~--~ 240 (477)
++++ .++.+|++++++++++ ++..++++.|+||||.+.+ +++|.++|+++|+++|+|++|++.... .
T Consensus 133 v~~~--~~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~ 201 (373)
T TIGR03812 133 APLD--EDYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLK 201 (373)
T ss_pred EeeC--CCCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHh
Confidence 9876 3578899999998865 4444555568999999988 778888899999999999999754211 0
Q ss_pred C--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC----------CCchHHHHHH
Q 011801 241 P--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG----------LVSSQTQYLL 308 (477)
Q Consensus 241 ~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~----------~vs~~~q~~~ 308 (477)
. ....+. + . ......+..|.+| +++++.|+|+++..++.+.+.++...++. +.+.....++
T Consensus 202 ~~~~~~~~d-~-~----~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~ 274 (373)
T TIGR03812 202 KGYNPPPFD-F-S----LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAAT 274 (373)
T ss_pred cCCCCCCcc-c-c----CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHH
Confidence 0 000000 0 0 0122234567789 66788899877654554444433222221 1222333344
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCe-EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEE
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGIN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v 387 (477)
...|..-. +..+++..+++.+.++++.+.|+++|+. +..+. ..++.+.++.. .++.+.+. ++||.+
T Consensus 275 ~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~v~~~~~~~---------~~v~~~L~-~~gi~v 341 (373)
T TIGR03812 275 YAVIKYLG--REGYRKIVAECMENTRYLVEELKKIGFEPVIEPV-LNIVAFEVDDP---------EEVRKKLR-DRGWYV 341 (373)
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCC-ceEEEEEeCCH---------HHHHHHHH-HCCcee
Confidence 44443211 2345667788889999999999998875 33433 35666766531 13555555 559999
Q ss_pred eCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 388 SPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 388 ~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+++. .++++|+++... ++++++.++++|++
T Consensus 342 ~~~~-----~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 342 SVTR-----CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ccCC-----CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 7652 367899999764 89999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=213.24 Aligned_cols=326 Identities=16% Similarity=0.123 Sum_probs=214.0
Q ss_pred cccccccccccccHHH-HHHHHHhCCCCcccccccccccccccccCC-----CCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 39 GVIQLGLAENQLCFDL-IKDWITKNPYASICTAEGVEVFKDIAIFQD-----YHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
+++.++.++...+.+. +.+...+. . ....|.+ ..|.+++++++++++.+..| .+++
T Consensus 21 ~~~~l~~g~~~~~~p~~~~~~~~~~-~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g----~~~~ 82 (398)
T cd00613 21 SMSFLGSGTYKHNPPAVIKRNILEN-E-------------FYTAYTPYQPEISQGRLQALFELQTMLCELTG----MDVA 82 (398)
T ss_pred CcccccccccCCcCcHHHHHHhccc-c-------------CcccCCCCChhhhhhHHHHHHHHHHHHHHHHC----CCcc
Confidence 5688888877676544 44433332 0 1123444 57899999999999998776 4455
Q ss_pred cEEEeC-ChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCC----cEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 113 RIVMGG-GATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTG----VQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 113 ~i~~t~-G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g----~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++++++ |+++++..++.++..+ ||.|++++|+|+.+...+... | .+++.++++. ++.+|++++++++.+
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~-~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~- 158 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTR-GEPLGIEVVEVPSDE--GGTVDLEALKEEVSE- 158 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHh-cccCCcEEEEeccCC--CCCcCHHHHHHhcCC-
Confidence 777766 4445555556666666 999999999999988776655 5 8888888753 457899999988743
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
++++|++++|+ |+|.+. +.+++|.++|+++|+++|+|++++... .. .... ..+..++++|
T Consensus 159 -----~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~--~~--~~~~--------~~~~d~~~~s 218 (398)
T cd00613 159 -----EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT--GL--KPPG--------EYGADIVVGN 218 (398)
T ss_pred -----CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc--CC--CChH--------HcCCCEEEee
Confidence 78999999885 899994 356999999999999999999875321 11 1111 1245688899
Q ss_pred CCcccCCC----CceEEEEEeCCHHHHHHHHH------------------------------hcc--cCCCchHHHHHHH
Q 011801 266 LSKDMGLP----GFRVGIVYSFNDTVVNCGRK------------------------------MSS--FGLVSSQTQYLLA 309 (477)
Q Consensus 266 lSK~~g~~----G~RvG~i~~~~~~i~~~~~~------------------------------~~~--~~~vs~~~q~~~~ 309 (477)
++|.+ +| |.|+||++.+++.+.. +.. ... ++......|.+..
T Consensus 219 ~~K~~-~p~g~Ggp~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~ 296 (398)
T cd00613 219 LQKTG-VPHGGGGPGAGFFAVKKELVRF-LPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAM 296 (398)
T ss_pred ccccC-CCCCCCCCceeEEEEhhhhHhh-CCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHH
Confidence 99998 56 7999999996654332 100 000 1111123333333
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE--EEeeccchhhccCchHHHHHHHHHHHhcCeEE
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF--FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~--~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v 387 (477)
.+.... +..+++.+++++++.+++.+.|++++... .+.+..+ ++++++... . ....++++.+. +.||.+
T Consensus 297 ~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~L~-~~gi~~ 367 (398)
T cd00613 297 YIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY---G-IRAEDLAKALI-DGGFHA 367 (398)
T ss_pred HHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc---h-HHHHHHHHhhh-hcCccc
Confidence 332221 22356677888999999999999876443 2222333 567766310 0 11235666665 458876
Q ss_pred eCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHH
Q 011801 388 SPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRI 420 (477)
Q Consensus 388 ~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l 420 (477)
.... +..++.+|+++... ++++++++++.|
T Consensus 368 ~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 368 PTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 4321 22457899999765 899999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-23 Score=208.13 Aligned_cols=291 Identities=14% Similarity=0.139 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC----CCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN----PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~----~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
++++.+|++++ .+++++++++|+++++..++.++.. +||.|++.++.|..+...++.. |++++.++.
T Consensus 63 ~~~~~la~~~g--------~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~-g~~~~~v~~ 133 (371)
T PRK13520 63 EAVEMLGELLH--------LPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADML-GVELRRAPL 133 (371)
T ss_pred HHHHHHHHHhC--------CCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHc-CceEEEecC
Confidence 45555555554 4556789999999999999877643 5799999999999888877766 999999987
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFT 244 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~ 244 (477)
+. ++.+|+++|++++.+ +++.|+++.++||||.+.+ +++|.++|+++|+++++|++|+++.... ....
T Consensus 134 ~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~ 202 (371)
T PRK13520 134 DD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPP 202 (371)
T ss_pred CC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCC
Confidence 53 567899999999875 5777888889999999998 8888888999999999999998643211 1100
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC----------CCchHHHHHHHHhcCC
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG----------LVSSQTQYLLASMLSD 314 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~----------~vs~~~q~~~~~~L~~ 314 (477)
.+ .. . ..+...+..|.+| ++++|.++|+++..++.+.+.+....++. +.+.....++...|..
T Consensus 203 ~~-~~-~----~~~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~ 275 (371)
T PRK13520 203 NF-DF-S----LPGVDSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKY 275 (371)
T ss_pred Cc-cc-c----CCCCceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhh
Confidence 00 00 0 1122345567788 55688999998876665544443222221 1122333444444432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCe-EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGIN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
-. +..+++..+++.+.++++.+.|++.|++ +..+.. .++.++++. . .++.+.+.+ .||.|+++.
T Consensus 276 l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~v~~~~~~---~------~~v~~~L~~-~gi~v~~~~-- 340 (371)
T PRK13520 276 LG--REGYRKVVERCMENTRWLAEELKERGFEPVIEPVL-NIVAFDDPN---P------DEVREKLRE-RGWRVSVTR-- 340 (371)
T ss_pred hc--HhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCc-eEEEEecCC---H------HHHHHHHHH-CCceeccCC--
Confidence 11 2224566777888889999999988987 555554 466677652 1 145555554 599998653
Q ss_pred CCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHh
Q 011801 394 QCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
.++++|+++... ++++++.+++.|+++++
T Consensus 341 ---~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 341 ---CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred ---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 356899998654 89999999999998765
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=208.25 Aligned_cols=296 Identities=15% Similarity=0.175 Sum_probs=202.0
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~ 161 (477)
.+..++|+.++++++. -++++|++|+|+++++..++..++++||+|+++.+.|+.+.. .++.. |.+++
T Consensus 44 ~~~~~~~~~la~~~~~-------~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~ 115 (376)
T TIGR01977 44 REVEETRQLLAKLFNA-------PSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQI-GVEIT 115 (376)
T ss_pred HHHHHHHHHHHHHhCc-------CCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHc-CcEEE
Confidence 4567899999999862 134589999999999999999999999999999999987643 23334 89999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+. ++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++++. +..
T Consensus 116 ~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~---g~~ 181 (376)
T TIGR01977 116 IVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTA---GVI 181 (376)
T ss_pred EEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhcc---Ccc
Confidence 888763 467899999998853 7899999999999999999 67788889999999999999973 222
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH----h--------------cccCCCchH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----M--------------SSFGLVSSQ 303 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----~--------------~~~~~vs~~ 303 (477)
+ ..+. ..+..+++.|++|.++.|. .+|.++..++........ . ...++.+..
T Consensus 182 ~-~~~~--------~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~ 251 (376)
T TIGR01977 182 P-IDMT--------ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTP 251 (376)
T ss_pred C-CCch--------hcCCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHH
Confidence 2 1111 1234577889999986442 367776655431110000 0 001122333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC----ceEEEEeeccchhhccCchHHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
...++...++. +.+.-.+..+++.++..+.+.+.|.+. |+++..+. .+..+++.+++. + ..++.+.
T Consensus 252 ~~~a~~~al~~--~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~------~~~~~~~ 322 (376)
T TIGR01977 252 GIAGLNAGIKF--IEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-D------SEEVADI 322 (376)
T ss_pred HHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-C------HHHHHHH
Confidence 33333333321 111123455667777888888888865 67665431 234677777532 1 1135555
Q ss_pred HHHhcCeEEeCCCCCCC--------CCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 379 IVNDVKLNVSPGSSFQC--------TEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~--------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+.+++||.+++|..|.. ..++.||++++.. ++++++.++++|++
T Consensus 323 L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 323 LDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 55555999999876642 2457999999765 99999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=205.82 Aligned_cols=323 Identities=14% Similarity=0.163 Sum_probs=206.4
Q ss_pred CCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 28 RNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 28 ~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
+-.+.+.-|..|++ -.++.++ +++.+.+.+.+.. ..| .+.+++++++++++.+.+|
T Consensus 4 ~~~~~~~ina~g~~-t~~g~s~-~~~~v~~a~~~~~----------------~~~---~~~~~~~~~~~~~~a~~~g--- 59 (363)
T TIGR01437 4 KYGLKKVINASGKM-TILGVST-VSDEVADAQKRGA----------------QNY---FEIKELVNKTGEYIANLLG--- 59 (363)
T ss_pred cCCCceEEECCcEe-ecCCCCC-CCHHHHHHHHHHH----------------hcC---CCHHHHHHHHHHHHHHhhC---
Confidence 33455556677766 3344444 4444445444421 123 3567888888888877655
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhcCCCC---------------eEEEcCCCccch----HHHHhhhCCcEEEEEeccCC
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLANPGD---------------AFLVPSPYYAAF----DRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~~~Gd---------------~vlv~~P~y~~~----~~~~~~~~g~~~~~v~~~~~ 168 (477)
.+++++|+|+|+|+.+++.+++++|| .|+++.|.|..| ...+... |++++.++++
T Consensus 60 ---~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~-g~~~v~v~~~-- 133 (363)
T TIGR01437 60 ---VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLG-GGKVVEAGYA-- 133 (363)
T ss_pred ---CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhc-CCeEEEEcCC--
Confidence 45799999999999999999999998 999999888765 3444545 9999888753
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEE-EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLI-ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vi-i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+.+|++++++++.+ ++++++ +++|+||+|.+.+ +++|.++|+++|+++|+|++|+. .. .+..
T Consensus 134 --~~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~---~~---~~~~ 196 (363)
T TIGR01437 134 --NECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE---DL---QKYY 196 (363)
T ss_pred --CCCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC---ch---HHHH
Confidence 45899999999965 677665 6788999999999 66789999999999999999972 11 1111
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc-------CCCchHHHHHHHHhcCChhhHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF-------GLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~-------~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
. .+..+++.|++|.+ .|++.|+++.+++.+. ..+..... +..+..++.++...+.+.
T Consensus 197 ~--------~g~D~~~~S~~K~l--~gp~~G~l~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~----- 260 (363)
T TIGR01437 197 R--------LGADLVIYSGAKAI--EGPTSGLVLGKKKYIE-WVKLQSKGIGRAMKVGKENILGLTAALEQYLST----- 260 (363)
T ss_pred H--------cCCCEEEEeCCccc--CCCceEEEEEcHHHHH-HHHhccCCCcceeccCHHHHHHHHHHHHHHHcc-----
Confidence 1 12346778999977 6888999998555443 33222111 111112222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CCeEecC--CceE-----EEEeeccchhhccCchHHHHHHHHHHHhcC--eEEeCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV-GINCLKS--NAGL-----FFWMDLRHLLKEKTLEGEIALWRTIVNDVK--LNVSPG 390 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~-----~~~~~l~~~~~~~~~~~e~~l~~~ll~~~g--I~v~pg 390 (477)
-.+..+.+.++++.+.+.|.++ |+.+... ..+. -+.++... ..... .++.+. |++.+ |.+++
T Consensus 261 -~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~----~g~~~-~~l~~~-L~~~~~~I~~r~- 332 (363)
T TIGR01437 261 -GKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE----LGMTA-ADVVQA-LRQGEPAIYTRG- 332 (363)
T ss_pred -CcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC----CCCCH-HHHHHH-HhcCCCCEEEee-
Confidence 1122223345566788999887 8877632 1111 11122211 01111 145454 45446 66665
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 391 SSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.| .+.+.+|+++...++++++.++++|++++
T Consensus 333 -~~--~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 333 -YK--ANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred -ee--ecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 22 34678999998789999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=203.58 Aligned_cols=215 Identities=16% Similarity=0.217 Sum_probs=155.4
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----Hhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~ 155 (477)
.+|+. .+..+|++++|++++ .+++++++|+++|+..++.+++++||.|+++.|.|+.+... ++..
T Consensus 59 ~r~~~-p~~~~Le~~iA~~~g----------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~ 127 (400)
T PRK06234 59 SRLGN-PTSTEVENKLALLEG----------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY 127 (400)
T ss_pred cCCCC-ccHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhC
Confidence 33443 468999999999986 23578888889999999999999999999999999865543 3444
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIY 233 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y 233 (477)
|++++.++.. |++++++++.+ ++|+|++++|+||||.+.+ +++|.++|+++ |+++|+||+|
T Consensus 128 -G~~v~~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~ 190 (400)
T PRK06234 128 -GVEVTFVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTF 190 (400)
T ss_pred -CeEEEEECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCC
Confidence 8988888742 68889888864 7899999999999999999 77788888886 9999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh--c-cc-CCCchHHHHHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM--S-SF-GLVSSQTQYLL 308 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~--~-~~-~~vs~~~q~~~ 308 (477)
+...+.. ++ ..+..++++|+||.++.+|.|+ ||++++++ +.+.++.. . .+ ..++++..+.+
T Consensus 191 ~~~~~~~----~l---------~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~l~p~~a~l~ 256 (400)
T PRK06234 191 CTPYIQR----PL---------QLGADVVVHSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSVIGPFEAFLI 256 (400)
T ss_pred CchhcCC----ch---------hhCCcEEEeeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 8543321 11 1134588999999999889775 99998665 44433321 1 12 23555655655
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
..-|+.-+ .+.++..++...+.+.|+++
T Consensus 257 ~~~l~tl~-------~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 257 IRGMKTLQ-------IRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred HhccCcHH-------HHHHHHHHHHHHHHHHHHcC
Confidence 55555432 23333445566677777654
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=207.13 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=186.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~ 170 (477)
.+.+++++++++|++.++.... ...+.|+..+-+|++....+...+| .+++.++.
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF----- 171 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----
Confidence 3689999999999999997541 1235688888887775432211111 11222221
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
-|++++++.+.+ ++++|+++ |.||+|.++ +.+.+++|+++|++||+++|+||+|.++.+.+.. .+...
T Consensus 172 --~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~ 241 (403)
T PRK05093 172 --NDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL-FAYMH 241 (403)
T ss_pred --CCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc-hhhhh
Confidence 167888887742 67776666 889988765 8899999999999999999999999987665542 22111
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-hc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-MS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
. . ..++ +.||||.+| +|+|+||++++++ +.+.+.. .. .....+++.|.++.+.|+... -.+..
T Consensus 242 ~-~---~~pd----i~s~sK~l~-~G~rig~vv~~~~-i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~-----~~~~~ 306 (403)
T PRK05093 242 Y-G---VTPD----ILTSAKALG-GGFPIGAMLTTAE-IASHFKVGTHGSTYGGNPLACAVAEAVFDIIN-----TPEVL 306 (403)
T ss_pred c-C---CCCC----EEEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-----hccHH
Confidence 1 0 1233 569999999 9999999999665 4444332 11 122367888988888664211 12334
Q ss_pred HHHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 327 KRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
++++++++.+.+.|++.+ +....+..|+++|+.++.... ....+++..++++ ||.+.|+ +++++|
T Consensus 307 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~~~-Gv~v~~~------g~~~lR 375 (403)
T PRK05093 307 EGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAAEE-GVMVLVA------GPDVLR 375 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHHHC-CeEEecC------CCCEEE
Confidence 677788888888888753 222334568999999874210 1233577777765 9999874 246899
Q ss_pred EEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 403 VCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 403 l~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++++.. +++++++++++|++++.+
T Consensus 376 l~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 376 FAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 987665 999999999999999864
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=202.87 Aligned_cols=218 Identities=18% Similarity=0.190 Sum_probs=157.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---h
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---R 155 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~ 155 (477)
..+|+++ -..+|++++|++.+ .+++++++|+++|+.+++.+++++||.|+++.|+|++....+.. .
T Consensus 45 Y~R~~~p-~~~~le~~lA~l~g----------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNP-TRDLLQQALAELEG----------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 4566654 36899999999875 36799999999999999999999999999999999875543322 2
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
.|+++..++. .|++++++++++ ++|+|++++|+||||.+++ +++|+++|+++|+++|+|++|+.
T Consensus 114 ~~~~v~~~d~-------~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 114 GCFRVLFVDQ-------GDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred cCeEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 1455544431 268888888754 7899999999999999999 67788888899999999999975
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L 312 (477)
..+.. ++ .. +..++++|+||.++ .+|++.|++++.++.+.+.++....+ ..++++.++++..-+
T Consensus 178 ~~~~~----pl-~~--------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l 244 (382)
T TIGR02080 178 PALQN----PL-AL--------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGL 244 (382)
T ss_pred cccCC----ch-hh--------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHccc
Confidence 32211 11 11 22378899999985 57899999988766666555443332 335666666665444
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+. +..+.++..++...+.+.|+++
T Consensus 245 ~t-------l~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 245 RT-------LVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred ch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 42 2233445556777777888765
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=204.93 Aligned_cols=297 Identities=12% Similarity=0.092 Sum_probs=200.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
..+|++.+|++++ .+..++++++++|+..++..+.. +||.|+.....|+.....+... |.++..++.
T Consensus 92 ~~~le~~la~~~g----------~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~-g~~~~~~~~ 160 (406)
T PRK13393 92 HVLLEAELADLHG----------KEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHS-RAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHc-CCeEEEeCC
Confidence 4788888888875 13444444445699999987765 7887777777777766666655 777766652
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.|++.+++.++... ..++++|++++++||+|.+.+ +++|.++|+++|+++|+||+|+..+++... ..
T Consensus 161 -------~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g 227 (406)
T PRK13393 161 -------NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GG 227 (406)
T ss_pred -------CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cc
Confidence 26778887775421 125788899999999999999 888888999999999999999843344322 22
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhcCChhhHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
+.... +...+.+++++||||.+|++| ||++++++ +.+.++... .+ +..++..+.++.+.|+.. +..
T Consensus 228 ~~~~~---~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~-~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~ 297 (406)
T PRK13393 228 IAERE---GLADRLTIIEGTLAKAFGVMG---GYITGSAA-LCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KAS 297 (406)
T ss_pred hhhhc---CCCCCCeEEEEeCchhhcccC---ceeeCCHH-HHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhC
Confidence 22111 112234677899999999888 99988544 545444432 22 223445566666666432 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCE
Q 011801 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGW 400 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~ 400 (477)
. ..+.++.++.+++.+.|++.|+++.++.+. ++.+.+... ....++.+.+++++||.++++..... .+.++
T Consensus 298 ~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~ 369 (406)
T PRK13393 298 S-AERERHQDRVARLRARLDKAGIPHLPNPSH-IVPVMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTER 369 (406)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-eEEEEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCce
Confidence 1 224567788889999999888877666554 555544321 11235677777767999998653321 23468
Q ss_pred EEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 401 FRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 401 ~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+|+++... +++++++++++|++++++
T Consensus 370 iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 370 LRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 99999754 999999999999999865
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=203.23 Aligned_cols=334 Identities=13% Similarity=0.112 Sum_probs=210.1
Q ss_pred CCCCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+.. .+ +.+.+.+.+.+.-+ ...... .....++++++++++.+..+
T Consensus 25 d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~-------------~~~~~~-~~~~~~~~~~la~~l~~~~~----- 85 (377)
T PRK02936 25 DNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLD-------------DIWHVS-NLFTNSLQEEVASLLAENSA----- 85 (377)
T ss_pred eCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hccccc-cccCCHHHHHHHHHHHhcCC-----
Confidence 344556788866542 23 34555555554311 111111 12346899999999986432
Q ss_pred CCCcEEEeCChHHHHHHHHHHh-cCCC-CeEEEcCCCccchHHHHhhhCCcEEE---EEeccCCCCcc--cCHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCL-ANPG-DAFLVPSPYYAAFDRDLSWRTGVQIV---PVHCDISNNFK--ITREALEAAY 182 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l-~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~---~v~~~~~~~f~--i~~~~l~~~~ 182 (477)
.+.+++++++++|++.++... ..+| +.|++.+++|++.........+.... ..+......+- -|++++++.+
T Consensus 86 -~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 164 (377)
T PRK02936 86 -GDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM 164 (377)
T ss_pred -CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhc
Confidence 358999999999999999853 2244 67999999998654322111122110 00110000000 1678888877
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
.+ ++++|++..+.+++|.. .+.+.+++|.++|++||+++|+||+|.++.+.+.. .+.... . ..++
T Consensus 165 ~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~-~~~~~~-~---~~~d--- 230 (377)
T PRK02936 165 NE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL-FAYEQF-G---LDPD--- 230 (377)
T ss_pred cC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhh-C---CCCc---
Confidence 53 68888888888999976 58899999999999999999999999876554432 222111 1 1223
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
+.+|||.+| +|+|+||+++++ .+.+.+.... .....+++.|.++.++|+.... + +..++++++.+.+.+.
T Consensus 231 -i~t~sK~l~-~G~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~----~~~~~~~~~~~~l~~~ 302 (377)
T PRK02936 231 -IVTVAKGLG-NGIPVGAMIGKK-ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-P----SFLEEVQEKGEYFLQK 302 (377)
T ss_pred -EEEEccccc-CCCccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHH
Confidence 237999999 999999999965 4444443221 1123678899998888864321 2 2234455555666666
Q ss_pred HhhC--CCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-cCCHHHHH
Q 011801 340 LEQV--GINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQ 414 (477)
Q Consensus 340 L~~~--gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~l~ 414 (477)
|.+. ++... ....|+++|++++.. ...+++ .+.+.||.+.|+. ++++|+++. ..++++++
T Consensus 303 L~~~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~-~l~~~gv~v~~~g------~~~lRi~p~~~~~~~~i~ 367 (377)
T PRK02936 303 LQEELEHLECVKNIRGKGLMIGIECTEE--------VAPVIE-QLREEGLLVLSAG------PNVIRLLPPLVVTKEELD 367 (377)
T ss_pred HHHHHhhCCcEEeEeecceEEEEEecch--------HHHHHH-HHHHCCeEEecCC------CCEEEEECCcccCHHHHH
Confidence 6542 22211 123568999998742 123444 4456799998752 468999973 35999999
Q ss_pred HHHHHHHHHH
Q 011801 415 VALNRIAAFV 424 (477)
Q Consensus 415 ~~l~~l~~~~ 424 (477)
+++++|++++
T Consensus 368 ~~i~~l~~~~ 377 (377)
T PRK02936 368 QAVYLLKKVL 377 (377)
T ss_pred HHHHHHHHhC
Confidence 9999998763
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=208.94 Aligned_cols=292 Identities=15% Similarity=0.191 Sum_probs=198.0
Q ss_pred HHHHHHHHHHH---hcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhh---hCCcEEE
Q 011801 89 PEFRQAVAKFM---GKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSW---RTGVQIV 161 (477)
Q Consensus 89 ~~lr~aia~~~---~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~ 161 (477)
+..+++++++. .+..| ++++++++|+|++++++.++.++. .+||.|+++.|.|+.+...++. ..|++++
T Consensus 108 ~g~~~~~~e~~~~la~l~g----~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~ 183 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTG----MDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVV 183 (447)
T ss_pred hHHHHHHHHHHHHHHHHhC----CCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEE
Confidence 44666666433 55555 567789999999999999988874 7999999999999988876543 2489999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEe--cccccccccC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVC--DEIYAATVFS 239 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~--De~y~~~~~~ 239 (477)
.+++++ + .+|++++++++.+ ++++|++++| ||||.+.+ +++|.++|+++|+++|+ |.+..+. +.
T Consensus 184 ~v~~~~--~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~-~~ 249 (447)
T PRK00451 184 EVPYED--G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGL-LK 249 (447)
T ss_pred EecCCC--C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhcc-CC
Confidence 999864 4 7899999998853 7899999999 99999977 88899999999999988 5443221 11
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEe---cCCcccCCCCceEEEEEeCCHHHHHH--------------------------
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIY---SLSKDMGLPGFRVGIVYSFNDTVVNC-------------------------- 290 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~---SlSK~~g~~G~RvG~i~~~~~~i~~~-------------------------- 290 (477)
.+ . ..+..++++ +|||.+.+.|.|+||++++++.+...
T Consensus 250 ~~---------~----~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (447)
T PRK00451 250 PP---------G----EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQ 316 (447)
T ss_pred Cc---------c----cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccc
Confidence 00 0 123344554 78888888899999999866544431
Q ss_pred -HHHhcccCCCc--hHHHH-HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEE--eeccch
Q 011801 291 -GRKMSSFGLVS--SQTQY-LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFW--MDLRHL 363 (477)
Q Consensus 291 -~~~~~~~~~vs--~~~q~-~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~--~~l~~~ 363 (477)
.++.......+ ...|. +++..+... .+..+++..+++.++++++.++|.+. |+++. .+++|.+ ++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~- 391 (447)
T PRK00451 317 HIRREKATSNICTNQALNALAAAIYMSLL--GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK- 391 (447)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC-
Confidence 01111111111 12232 222222210 02346778889999999999999988 67765 3344543 44431
Q ss_pred hhccCchHHHHHHHHHHHhcCeE-EeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 364 LKEKTLEGEIALWRTIVNDVKLN-VSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 364 ~~~~~~~~e~~l~~~ll~~~gI~-v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
. ..++.+.+.++ ||. ..+++.|.+...+++|+++... ++++++++++.|++++
T Consensus 392 -~------~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 392 -P------AEEVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred -C------HHHHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 1 12577777665 655 3456666544457999999753 8999999999998764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=200.19 Aligned_cols=209 Identities=18% Similarity=0.216 Sum_probs=151.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~v 163 (477)
..+|++.+|++++ .+++++++|+++|+..++.+++++||.|+++.+.|++... .+... |++++.+
T Consensus 63 ~~~le~~la~l~g----------~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~v~~v 131 (390)
T PRK08133 63 VTMFQERLAALEG----------AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTFV 131 (390)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHc-CcEEEEE
Confidence 6789999999876 3568999999999999999999999999999999876543 34444 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++ |++++++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+..
T Consensus 132 d~~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--- 192 (390)
T PRK08133 132 DLT-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--- 192 (390)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 753 67888887754 7899999999999999998 7889999999999999999997432211
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhcccC-CCchHHHHHHHHhcCChhhHHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSSFG-LVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~~~-~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
++ . .+..++++|+||.++.+|.++ |+++++++.+......+...+ .+++..++++..-++.
T Consensus 193 -pl-~--------~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~t------- 255 (390)
T PRK08133 193 -PL-K--------LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLET------- 255 (390)
T ss_pred -ch-h--------hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccch-------
Confidence 11 1 123477899999999889998 556665544433333333333 2444554444333321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+..+.++..++...+.+.|++.
T Consensus 256 l~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 256 LSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344445556777888888876
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=199.16 Aligned_cols=290 Identities=14% Similarity=0.188 Sum_probs=191.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh---
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR--- 155 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~--- 155 (477)
..+|+++. ..+|++.+|++++. .+.|+ +++++.|+..++.+++++||.|+++.|.|+.....+...
T Consensus 55 y~r~~~pt-~~~Le~~lA~l~G~---------~~al~-~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~ 123 (386)
T PRK06767 55 YSRLGNPT-VKLFEERMAVLEGG---------EEALA-FGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK 123 (386)
T ss_pred ccCCCCcc-hHHHHHHHHHHhCC---------CcEEE-ECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh
Confidence 34565543 68999999999871 24444 455567999999899999999999999988765544322
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
.|+++..++. .|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 124 ~gi~~~~~~~-------~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~ 187 (386)
T PRK06767 124 FMITHSFCDM-------ETEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCS 187 (386)
T ss_pred cCeEEEEeCC-------CCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 2555444432 267888888754 7899999999999999999 77888888899999999999974
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhcc-c-CCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSS-F-GLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~-~-~~vs~~~q~~~~~~L 312 (477)
..+. . ++ ..+..++++|+||.++.+|.|+ |+++++++.+....+.... . +.++++.++++...|
T Consensus 188 ~~~~-~---pl---------~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L 254 (386)
T PRK06767 188 PYLQ-R---PL---------ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGL 254 (386)
T ss_pred cccC-C---ch---------hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 3222 1 11 1133477889999998889885 8899877666554433322 2 235666666655555
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec------------CCceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
.. +..+.++..++...+.+.|+++ ++.... ..+| .+.++++... +....+...+
T Consensus 255 ~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg-~vsf~l~~~~-----~~~~~f~~~l 321 (386)
T PRK06767 255 KT-------LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGG-VISFSIKGGK-----EETQAFINDL 321 (386)
T ss_pred Cc-------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCc-eEEEEEcCCH-----HHHHHHHHhC
Confidence 43 2334456677888888899887 665321 1233 4556665311 1122344433
Q ss_pred HHhcCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 380 VNDVKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+..++.++-|..... -.++.+|+|++. |+.+.+++-|.+++.
T Consensus 322 -~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 322 -HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred -CccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 445666665543321 024689999995 556777777777765
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=197.12 Aligned_cols=218 Identities=19% Similarity=0.211 Sum_probs=161.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---h
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---R 155 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~ 155 (477)
..+|+++ ....|++++|++.+ .+.+++++|+++|+.+++.++++|||.|++++|+|++....+.. .
T Consensus 46 Y~R~~~p-t~~~L~~~lA~l~g----------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 114 (386)
T PRK08045 46 YSRRGNP-TRDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 4567665 46899999999986 23699999999999999999999999999999999864433221 2
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
.|+++..++ ..|++++++++++ ++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|..
T Consensus 115 ~gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 115 GCYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred CCeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence 245655543 1478888888754 7899999999999999999 67788888899999999999975
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHh-cc-cCCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKM-SS-FGLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~-~~-~~~vs~~~q~~~~~~L 312 (477)
.... .++ .. +..++++|++|.++ .++.+.|++++.++.+.+.++.. .. ...++++.++++...|
T Consensus 179 ~~~~----~pl-~~--------gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl 245 (386)
T PRK08045 179 PALQ----NPL-AL--------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 245 (386)
T ss_pred cccC----Cch-hh--------CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 3221 111 11 22378999999985 56788999988666555544332 22 2346788888888888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+. +..+.++..+....+.+.|+++
T Consensus 246 ~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 246 RT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred cc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 76 3445566677778888888876
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=197.34 Aligned_cols=210 Identities=17% Similarity=0.228 Sum_probs=144.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc----chHHHHhhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA----AFDRDLSWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~----~~~~~~~~~~g~~~~ 161 (477)
....+|++++|++.+ . ...+++++| ++|+..++.++++|||.|+++.|.|+ .|...++.. |+++.
T Consensus 45 p~~~~L~~~lA~l~g--------~-~~~v~~~sG-~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~-G~~v~ 113 (376)
T PRK06460 45 PTVLELTKKIVELEN--------A-EMGVAFSSG-MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNW-GVNVD 113 (376)
T ss_pred ccHHHHHHHHHHHhC--------C-CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhh-CcEEE
Confidence 357899999999987 2 234555444 68999999999999999999987553 444556655 99988
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+. .+.+++.+ ..++|+|++++|+||||.+++ +++|+++|+++|+++|+||+|+.. +..
T Consensus 114 ~~~~~~-------~~~l~~~~------~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~-~~~- 175 (376)
T PRK06460 114 ASNPGS-------DNIIEKAK------SKRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTP-INQ- 175 (376)
T ss_pred EECCCC-------HHHHHHhc------CCCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcc-ccC-
Confidence 776431 22333322 237899999999999999999 556788888999999999999742 111
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHh-cccCC-CchHHHHHHHHhcCChhhH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKM-SSFGL-VSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~-~~~~~-vs~~~q~~~~~~L~~~~~~ 318 (477)
.+ + ..+.+++++|+||.++ ..|.|+||++++++ +.+.+++. ..++. .++. .+..++...++
T Consensus 176 --~~---l------~~~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~~l~~~~~~~g~~~~~~---~a~~~l~~~~~- 239 (376)
T PRK06460 176 --KP---L------ELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPH---AAYLTLRGIKT- 239 (376)
T ss_pred --Ch---h------hcCCCEEEeecceeccCCCCceEEEEecCHH-HHHHHHHHHHhcCCCCCHH---HHHHHHhchhh-
Confidence 11 1 1234688999999985 22378999998554 54544433 33332 2322 22333344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
++.+.+++.++++.+.+.|++.
T Consensus 240 ---l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 240 ---LKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Confidence 5666777888889999999876
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=196.39 Aligned_cols=313 Identities=15% Similarity=0.151 Sum_probs=199.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
|+...++.+|++++|+|++. .+.+++++|.+... .++.+++++||.|+++++.|+.+...+... +.+++
T Consensus 39 yg~~~~~~~LE~~lA~~~g~---------e~al~~~sG~~a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~-~~~~~ 107 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLGT---------ESAILYSDGASTTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLS-RANVR 107 (392)
T ss_pred cCChHHHHHHHHHHHHHhCC---------CcEEEecCcHHHHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHc-CCeEE
Confidence 77666889999999999972 36677777766555 677778999999999999999987776555 77777
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHH--------hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 162 PVHCDISNNFKITREALEAAYERAQE--------ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~--------~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
.++.. |.+.+++.++.... ...++++|++.++.||+|.+.+ +++|.++|+++|+++|+||+|
T Consensus 108 ~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~ 177 (392)
T PLN03227 108 WFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESF 177 (392)
T ss_pred EeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcc
Confidence 66642 34455554433221 1236788899999999999999 778999999999999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCC-CchHHHHHHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGL-VSSQTQYLLA 309 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~-vs~~~q~~~~ 309 (477)
+ +...++......+... .....+..+++.|+||.+|.. .|+++++++ +.+..+.. ..|+. .++..+.++.
T Consensus 178 ~-~g~~g~~G~g~~~~~g-~~p~~~~Div~~slsk~~g~~---gg~v~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~aa~ 251 (392)
T PLN03227 178 S-FGTLGKSGRGSLEHAG-LKPMVHAEIVTFSLENAFGSV---GGMTVGSEE-VVDHQRLSGSGYCFSASAPPFLAKADA 251 (392)
T ss_pred c-ccccCCCCCcHHHHcC-CCCCCCceEEEeechhhhhcc---CcEEecCHH-HHHHHHHhCcCccccCCCCHHHHHHHH
Confidence 7 3222322122333211 000124478889999988644 488887554 44333322 22332 2344455544
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe----------cCCceEEEEeeccchhhccCchH---HHHHH
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL----------KSNAGLFFWMDLRHLLKEKTLEG---EIALW 376 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~----------~~~~g~~~~~~l~~~~~~~~~~~---e~~l~ 376 (477)
..+.... + .++..++++++.+++.+.|++.++... ....|+++.+.+.+......... -.+++
T Consensus 252 ~al~~~~--~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 327 (392)
T PLN03227 252 TATAGEL--A--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIA 327 (392)
T ss_pred HHHHHHh--c--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHH
Confidence 3332211 1 134456777888888888876543311 11234566666654211111111 02455
Q ss_pred HHHHHhcCeEEeCCCC-----CCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSS-----FQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~-----f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.++ ++||.+.+... +....+..+|+++.. .++|++++++++|++++++
T Consensus 328 ~~~~-~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 328 HHSL-SEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred HHHH-HCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 5555 45999875321 122335789999966 4999999999999999865
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=202.80 Aligned_cols=293 Identities=16% Similarity=0.218 Sum_probs=198.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHH---hhhCCcE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDL---SWRTGVQ 159 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~---~~~~g~~ 159 (477)
...++|+.+|++++ .++++|++++|+|+++.+++.++. ++||.|+++.+.|+.+...+ +.. |++
T Consensus 50 ~~~~~r~~ia~~~g--------~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~-g~~ 120 (404)
T PRK14012 50 AVDIARNQIADLIG--------ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFE 120 (404)
T ss_pred HHHHHHHHHHHHcC--------cCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhC-CCE
Confidence 35688899999886 567889999999999999887764 78999999999998765433 334 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++.+. ++.+|+++|++++.+ ++++|++++++||||.+.+ +++|.++|+++|+++|+|++++ ++
T Consensus 121 ~~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~---~g 186 (404)
T PRK14012 121 VTYLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQS---VG 186 (404)
T ss_pred EEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchh---cC
Confidence 99998763 567899999998864 7889999999999999998 7888889999999999999997 32
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--------ccCCCchHHHHHHHHh
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--------SFGLVSSQTQYLLASM 311 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--------~~~~vs~~~q~~~~~~ 311 (477)
..+ ..+.. .+..+++.|++|.+| |+ ++|+++.+++.......... ..++.+......+.+.
T Consensus 187 ~~~-~~~~~--------~~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~a 255 (404)
T PRK14012 187 KVP-IDLSK--------LKVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEA 255 (404)
T ss_pred Ccc-cCccc--------CCCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHH
Confidence 221 12111 123366779999887 54 69999887654321111000 0111222222222222
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC-----CceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS-----NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~-----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
+.. ++....+..++.++.++++.+.|+++ ++.+... ...+++|+.+... + ++... + .++
T Consensus 256 l~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~-l--~~~ 320 (404)
T PRK14012 256 ARI---AKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG-------E--SLIMA-L--KDL 320 (404)
T ss_pred HHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH-------H--HHHHh-C--CCe
Confidence 221 12223445566677777788888765 4544321 2234566665321 1 23333 2 378
Q ss_pred EEeCCCCCCCC-----------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 386 NVSPGSSFQCT-----------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 386 ~v~pg~~f~~~-----------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
.|..|..|.+. .++.+|++++.. ++++++.+++.|++++++.+
T Consensus 321 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 321 AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred EEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888776432 136899999874 99999999999999987654
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=202.33 Aligned_cols=270 Identities=16% Similarity=0.168 Sum_probs=178.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC---------CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN---------PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~---------~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~ 168 (477)
.+.+++++++++|++.++..... +| +.|+..+-+|++........++.. +..++.
T Consensus 97 ~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (396)
T PRK04073 97 KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY--- 173 (396)
T ss_pred CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC---
Confidence 36899999999999999887521 34 678888777776542221111211 111221
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
. |++++++++.+ ++++|+++.|+||+|.+++.+ .+++|.++|+++|+++|+||+|.++...+..+. .
T Consensus 174 ---~-d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~--~ 241 (396)
T PRK04073 174 ---G-DLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA--C 241 (396)
T ss_pred ---C-CHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH--h
Confidence 1 67888887753 688888888899999998765 699999999999999999999997544332211 1
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVET 325 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~ 325 (477)
+.. +..++ +.+|||.+|.+|+|+||++++++ +.+.+... ......+++.|.++.+.|+..+ + ...
T Consensus 242 ~~~---~~~pd----i~~~sK~lg~gg~~ig~~~~~~~-i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~--~---~~l 308 (396)
T PRK04073 242 DWD---NVTPD----MYILGKALGGGVFPISCVAANRD-ILGVFTPGSHGSTFGGNPLACAVSIAALEVLE--E---EKL 308 (396)
T ss_pred hhc---CCCCC----EEEecccccCCCCcceEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--h---cCH
Confidence 111 11222 33689999988899999999654 44444321 1222367888888888775211 1 112
Q ss_pred HHHHHHHHHHHHHHHhhCC---CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 326 SKRLAKRHHNFTKGLEQVG---INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~g---i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
.++.+++.+++.+.|++++ +....+. |+|++++++.. ..++.+.+++ +||.+.+. +++++|
T Consensus 309 ~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~~--------~~~~~~~l~~-~Gv~~~~~------~~~~iR 372 (396)
T PRK04073 309 PERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNEP--------ARPYCEALKE-EGLLCKET------HETVIR 372 (396)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecch--------HHHHHHHHHH-CCeEEecC------CCCEEE
Confidence 2344556677888887753 3333344 67889988631 1246666654 59999763 246899
Q ss_pred EEecc-CCHHHHHHHHHHHHHHH
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
+++.. .+++++++++++|++++
T Consensus 373 i~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 373 FAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EECCcccCHHHHHHHHHHHHHHh
Confidence 99754 39999999999999876
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=200.05 Aligned_cols=294 Identities=17% Similarity=0.225 Sum_probs=202.4
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHH---hhhCCcE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDL---SWRTGVQ 159 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~---~~~~g~~ 159 (477)
.+.++|+.++++++ .++++|++|+|+|+++.+++.++. ++||.|+++.+.|+.+...+ +.. |++
T Consensus 48 ~~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~-g~~ 118 (402)
T TIGR02006 48 AVENARNQVAELIG--------ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE-GFE 118 (402)
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhc-CCE
Confidence 46778888999876 568899999999999999887653 68999999999998765443 334 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++++. ++.+|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++++. .
T Consensus 119 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~---g 184 (402)
T TIGR02006 119 VTYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSV---G 184 (402)
T ss_pred EEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhc---C
Confidence 99998763 467899999988754 6889999999999999998 77888999999999999999973 2
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHh
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASM 311 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~ 311 (477)
..+ ..+. ..+..+++.|.+|.+|.+| +|+++..++......... ...++.+.....++...
T Consensus 185 ~~~-~~~~--------~~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~a 253 (402)
T TIGR02006 185 KIP-INVN--------ELKVDLMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEA 253 (402)
T ss_pred Ccc-cCcc--------ccCCCEEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHH
Confidence 211 1211 1234467789999887446 899888654332111000 01123344444444444
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC-----ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
++- +...++...+++++.++.+.+.|+++ ++.+..+. ..+.+ .++. .. .+ ++... + .+|
T Consensus 254 l~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v--~f~~-~~-----~~-~~~~~-l--~~i 318 (402)
T TIGR02006 254 FRI---AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNV--SFNY-VE-----GE-SLIMA-L--KDL 318 (402)
T ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEE--EEeC-cC-----HH-HHHHh-c--CCE
Confidence 432 23345666778888889999998875 55554221 11122 2221 11 11 23222 2 489
Q ss_pred EEeCCCCCCCC-----------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 386 NVSPGSSFQCT-----------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 386 ~v~pg~~f~~~-----------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.++.|..|... ..+++|+|++.. |+++++.+++.|+++++..+.
T Consensus 319 ~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 319 AVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred EEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99998877542 137899999876 899999999999999876543
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=202.63 Aligned_cols=346 Identities=13% Similarity=0.109 Sum_probs=213.2
Q ss_pred CCCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccC-CCCCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ-DYHGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+..||+..+. +.+ +.+.+.+.+++.-+ +...|. +..+..+|+++|++++..
T Consensus 44 d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~lae~l~~~~~~------- 103 (423)
T TIGR00713 44 DVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALE-------------RGTSYGAPTEAEILLAKEIISRVPS------- 103 (423)
T ss_pred eCCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hCCcCCCCCHHHHHHHHHHHHhCCc-------
Confidence 44556788886543 333 45666666665311 112333 345788999999998741
Q ss_pred cCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhC--CcEEEEEeccC-------CCCcc---cC
Q 011801 109 FDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRT--GVQIVPVHCDI-------SNNFK---IT 174 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~--g~~~~~v~~~~-------~~~f~---i~ 174 (477)
.++|++++|+++|++.+++.. ....++|+..+++|+++...+...+ +......+..+ .+.+. -|
T Consensus 104 --~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 181 (423)
T TIGR00713 104 --VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYND 181 (423)
T ss_pred --ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCC
Confidence 368999999999999988753 2245899999999998754332210 11110001000 00011 16
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 175 REALEAAYERAQEASINIKGLIIT-NPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~-nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
++++++++++. ..++++|++. .|+| +|.+.+ .+.+++|.++|++||+++|+||+|.++.++ ..+. .+..
T Consensus 182 ~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g-~~~~--~~~~-- 252 (423)
T TIGR00713 182 LEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVA-LGGA--QEYF-- 252 (423)
T ss_pred HHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccC-cchh--HHHh--
Confidence 88998888632 2378888774 7888 798887 688999999999999999999999876443 2211 1111
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH---h--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK---M--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~---~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
+..++ +.+|||.+| +|+|+||++++++ +.+.+.. . .+....++++|.++.+.|+..+- +.+.+..++
T Consensus 253 -~~~pD----i~t~sK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~ 324 (423)
T TIGR00713 253 -GVEPD----LTTLGKIIG-GGLPVGAFGGRRE-IMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDE 324 (423)
T ss_pred -CCCcc----hhhhhhhhc-CCCceeeeeEHHH-HHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 11333 238999999 9999999999654 4444432 1 11123677888887777652210 113445555
Q ss_pred HHHHHHHHHHHHHhhCCCeEecCCceEEEEeecc--chhh---c--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 328 RLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR--HLLK---E--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~--~~~~---~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
..+..++.+.+.+++.++.......|.++.+.+. ...+ . .+...-..++..+++ +||.+.++ .| +.
T Consensus 325 ~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-~~-----~~ 397 (423)
T TIGR00713 325 LAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS-QF-----EA 397 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC-Cc-----cc
Confidence 5666667777777777765432222333333332 1100 0 000111245566665 69998654 22 35
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 401 FRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 401 ~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+++. .+++++++++++|.+++++
T Consensus 398 ~~l~~~-~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 398 CFLSAA-HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred eeeECC-CCHHHHHHHHHHHHHHHhh
Confidence 788887 5999999999999998864
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=195.48 Aligned_cols=211 Identities=19% Similarity=0.271 Sum_probs=157.4
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
-..+|++++|++.+ .+..++++++++|+..++.+++++||.|+++.+.|.+.... ++.. |+++..
T Consensus 41 ~~~~le~~la~l~g----------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 109 (369)
T cd00614 41 TVDALEKKLAALEG----------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKL-GIEVTF 109 (369)
T ss_pred hHHHHHHHHHHHHC----------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhc-CeEEEE
Confidence 46899999999886 24577778889999999999999999999999999876543 3334 888887
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ +++++++++++ ++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|+..++..
T Consensus 110 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~-- 171 (369)
T cd00614 110 VDPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR-- 171 (369)
T ss_pred eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC--
Confidence 7743 47888887753 7899999999999999998 7888999999999999999997543311
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc-cc-CCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS-SF-GLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~-~~-~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+ + ..+..++++|+||.+|.+| .+.|+++++++.+.+.++... .+ +.+++..++++...|+.
T Consensus 172 --~---~------~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t----- 235 (369)
T cd00614 172 --P---L------ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT----- 235 (369)
T ss_pred --h---h------hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-----
Confidence 1 1 1234578999999998666 889999997745555444332 22 23566666666555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVG 344 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~g 344 (477)
+..+.++..++.+.+.+.|++++
T Consensus 236 --l~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 236 --LPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCC
Confidence 23345566777788888888774
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=194.28 Aligned_cols=216 Identities=19% Similarity=0.293 Sum_probs=152.9
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~ 155 (477)
.+|+.+ -..+|++.+|++.+ .+.+++++++++|+.+++.+++++||.|+++.+.|++.. ..+...
T Consensus 49 ~r~~~p-~~~~le~~la~l~g----------~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 117 (380)
T TIGR01325 49 SRYANP-TVAAFEERIAALEG----------AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRF 117 (380)
T ss_pred ecCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHh
Confidence 456543 36899999999876 256788999999999999999999999999999887533 334445
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|+++..++.+ |++++++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 118 -g~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 118 -GIEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred -CCEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9998888753 57888877643 7899999999999999998 78888889999999999999975
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhcccCC-CchHHHHHHHHhcC
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSSFGL-VSSQTQYLLASMLS 313 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~~~~-vs~~~q~~~~~~L~ 313 (477)
..+.. ++ . .+..+++.|+||.++-+|.++ |+++++++.+......+...+. +++...+++..-+.
T Consensus 181 ~~~~~----pl-~--------~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~ 247 (380)
T TIGR01325 181 PVLQQ----PL-K--------LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLE 247 (380)
T ss_pred cccCC----ch-h--------hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccC
Confidence 32221 11 1 133477889999998788887 6677655433333323333332 34444333333332
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
. +..+.++..+.+..+.+.|+++
T Consensus 248 t-------l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 248 T-------LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred c-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 2 3334455666777788888876
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=199.66 Aligned_cols=312 Identities=12% Similarity=0.087 Sum_probs=192.0
Q ss_pred HHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchHHHHhhhCCc---------
Q 011801 91 FRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSWRTGV--------- 158 (477)
Q Consensus 91 lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~~~g~--------- 158 (477)
...++|+++.+..+. ... +++++++++++|++.+++.. .++ ..|+...++|++....+...++.
T Consensus 85 ~~~~la~~l~~~~~~--~~~-~~~~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~ 160 (425)
T PRK08088 85 PYLELCEKMNQKVPG--DFA-KKTLLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG 160 (425)
T ss_pred HHHHHHHHHHHhCCC--CCC-CEEEEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence 344777777765431 121 46677666677777666543 344 45777799998876554433121
Q ss_pred ------EEEEEeccCCCCcccC--HHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 159 ------QIVPVHCDISNNFKIT--REALEAAYERAQEASINIKGLIITN-PSNPLGTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 159 ------~~~~v~~~~~~~f~i~--~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
..+++|.+. ++...+ ++.|++.+++. ..+.++.+|++.- .+++.+...+.+.+++|+++|+++|+++|+
T Consensus 161 ~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~ 238 (425)
T PRK08088 161 LMPGHVYRALYPCPL-HGVSEDDAIASIERIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIA 238 (425)
T ss_pred CCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 111122211 111111 44566666421 1123566655542 267877888999999999999999999999
Q ss_pred cccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHH
Q 011801 230 DEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYL 307 (477)
Q Consensus 230 De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~ 307 (477)
||+|.++.+.+. +.+... .+.+..+.||||.++ +|+|+||++++++ +.+.+... ......++++|.+
T Consensus 239 Dev~~g~g~~g~-~~~~~~--------~~~~pdi~s~sK~l~-~G~rig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~a 307 (425)
T PRK08088 239 DEVQTGAGRTGT-LFAMEQ--------MGVAADLTTFAKSIA-GGFPLAGVTGRAE-VMDAIAPGGLGGTYAGNPIACAA 307 (425)
T ss_pred eccccCCCcCcc-hhHHhh--------cCCCCCEEEEecccc-CCCcceeeEecHH-HHhhcCCCCCCCCCCcCHHHHHH
Confidence 999997544332 222111 122334789999998 9999999999655 44433222 1222367899999
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-eEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcC
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI-NCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVK 384 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi-~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~g 384 (477)
+..+|+.... ++++++.++..+.+++.+.+.+.+.+. ..... .|+++|+.+...... .......+++..+++ .|
T Consensus 308 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g-~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~G 384 (425)
T PRK08088 308 ALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRG-LGAMIAIELFEDGDHSKPNAKLTAQIVARARD-KG 384 (425)
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEec-cceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CC
Confidence 9999986543 455555555544444444444444443 22222 289999999532211 011123356666665 59
Q ss_pred eEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 385 LNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 385 I~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|.+.|+..| ++.+|++++. .+++++++++++|++++.+
T Consensus 385 v~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 385 LILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CEEecCCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 998876544 4689999985 5899999999999999875
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=196.54 Aligned_cols=217 Identities=17% Similarity=0.261 Sum_probs=152.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~ 154 (477)
..+|+++ -..+|++++|++.+ . +..+++++++.|+..++.+++++||.|+++.|.|+++...+ ..
T Consensus 59 y~r~~~p-~~~~Le~~lA~l~G--------~--~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 127 (398)
T PRK07504 59 YSRYSNP-TVDMFEKRMCALEG--------A--EDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR 127 (398)
T ss_pred eecCCCc-hHHHHHHHHHHHhC--------C--CeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh
Confidence 3456544 36899999999986 2 23345677788998888888899999999999999764432 33
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |+++..++ .+|++++++++++ ++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|+
T Consensus 128 ~-G~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a 190 (398)
T PRK07504 128 Y-GIESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFA 190 (398)
T ss_pred c-CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcc
Confidence 4 88888775 2578999888754 7899999999999999999 7788888999999999999998
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE-EEEeCCHHHHHHHHH-hcccC-CCchHHHHHHHHh
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG-IVYSFNDTVVNCGRK-MSSFG-LVSSQTQYLLASM 311 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG-~i~~~~~~i~~~~~~-~~~~~-~vs~~~q~~~~~~ 311 (477)
...+.. +. + .+..+++.|+||.++.+|.|+| +++++++.+.+.++. +...+ .+++..++++..-
T Consensus 191 ~~~~~~----~~-~--------~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~ 257 (398)
T PRK07504 191 TPLFQK----PL-E--------LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKG 257 (398)
T ss_pred ccccCC----ch-h--------hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 533321 11 1 1345789999999988999996 555655544433332 22222 3455555555555
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
|.. +..+.++..++...+.+.|+++
T Consensus 258 L~t-------l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 258 LET-------LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred cch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 544 2233334446666677777765
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-21 Score=191.67 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=160.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH---hhh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL---SWR 155 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~---~~~ 155 (477)
..+|+.+ ....|++++|++.+ .+++++++|+++|+.+++.+++++||.|+++.|+|++....+ ...
T Consensus 47 Y~R~~np-t~~~Le~~lA~leg----------~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~ 115 (388)
T PRK08861 47 YTRSGNP-NRGLLEQTLSELES----------GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK 115 (388)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc
Confidence 4455554 46899999999986 479999999999999999999999999999999998644332 112
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
.|+++..++. .|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..
T Consensus 116 ~gi~v~~vd~-------~d~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~ 179 (388)
T PRK08861 116 GDFKVQFVDQ-------SDAAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLT 179 (388)
T ss_pred CCeEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccc
Confidence 2677777652 378888887754 7899999999999999999 67788888899999999999985
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L 312 (477)
.++..+ . ..+..++++|++|.++- .+...|++++.++.+.+.++..... ..+++...+++..-|
T Consensus 180 ~~~~~p--l-----------~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl 246 (388)
T PRK08861 180 PVLQKP--L-----------ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGI 246 (388)
T ss_pred cccCCC--c-----------ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcC
Confidence 433221 1 11334789999999864 3478899988666665544433322 335777777777777
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+.-. -+.++..+....+.+.|+++
T Consensus 247 ~Tl~-------lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 247 RTLG-------ARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred CCHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 7643 23344455666777778765
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=192.40 Aligned_cols=280 Identities=16% Similarity=0.162 Sum_probs=185.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~ 154 (477)
..+|+++ ...+|++++|++.+ .+ .++++++++|+..++.+++++||+|+++.|.|.++...+ +.
T Consensus 45 y~ry~~p-~~~~Le~~lA~l~~----------~~-~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~ 112 (366)
T PRK07582 45 YGRASNP-TWRALEAALGELEG----------AE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP 112 (366)
T ss_pred eECCCCc-cHHHHHHHHHHHcC----------CC-EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc
Confidence 4567654 67999999999862 34 455555568999999999999999999999998876543 23
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |++++.++.+.. + + . +. .++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 113 ~-G~~v~~v~~~~~--~----~---~-~~------~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 113 L-GVTVREAPTAGM--A----E---A-AL------AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred C-eEEEEEECCCCh--H----H---H-hc------cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCC
Confidence 4 899988886421 1 1 1 11 27889999999999998887 8889999999999999999996
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHh
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASM 311 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~ 311 (477)
.. +... ++ +. +..++++|+||.+ |.+|+|+||+++.++.+.+.++....+ ...+++..+.+...
T Consensus 173 ~~-~~~~---p~-~~--------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~ 239 (366)
T PRK07582 173 TP-LGQR---PL-EL--------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRS 239 (366)
T ss_pred Cc-cccC---ch-hc--------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 32 2111 11 11 2237889999998 456799999998766666655543322 23566777777777
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe-Ee----c--C-----------CceEEEEeeccchhhccCchHH
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN-CL----K--S-----------NAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~----~--~-----------~~g~~~~~~l~~~~~~~~~~~e 372 (477)
|...+ .+.++..++...+.+.|+++ .+. +. + + .+| .+.+++.. .
T Consensus 240 l~tl~-------~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg-~~s~~~~~---~------ 302 (366)
T PRK07582 240 LGTLG-------LRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGG-LVSFELAD---A------ 302 (366)
T ss_pred cccHH-------HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcc-eEEEEeCC---H------
Confidence 76533 22344456667777778765 332 22 1 1 234 45566642 1
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC--------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC--------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~--------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+...+.++..++.. .+.+++. ..++.+|+|++. |+.+.+++.|.++++
T Consensus 303 -~~~~~~~~~l~~~~-~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl---E~~~dli~dl~~al~ 364 (366)
T PRK07582 303 -AAAERFVAASRLVV-AATSFGGVHTSADRRARWGDAVPEGFVRLSCGI---EDTDDLVADLERALD 364 (366)
T ss_pred -HHHHHHHHhCCcce-ecccCCCccchhhhHHHcCCCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 12345566666644 2333332 124689999996 345566777766664
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=194.55 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=196.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEE---
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIV--- 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~--- 161 (477)
..++++++|+.+.. .++ .+++++++++|++.++.... ..++.|++.+..|++........+|.+..
T Consensus 68 ~~~~~~~la~~l~~--------~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~ 139 (375)
T PRK04260 68 LNSLQEEVAQKLIG--------DKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDG 139 (375)
T ss_pred CCHHHHHHHHHHhc--------CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCC
Confidence 46888999987752 133 46889999999998887652 34678999999888643222111122111
Q ss_pred ------EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 162 ------PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 162 ------~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
.++.. .+ .|++.+++.+.+ ++.+|++..++|++|... +.+.++++.++|+++|+++|+||+|.
T Consensus 140 ~~~~~~~~~~~---~~-~dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~ 209 (375)
T PRK04260 140 FGDGVPHFSYA---IF-NDLNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT 209 (375)
T ss_pred CCCCCCCeEEe---CC-CCHHHHHHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 11110 01 278888877642 678889999999999875 46779999999999999999999998
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhc
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASML 312 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L 312 (477)
++...+.. .+.. .. +..++ +.||||.+| +|+|+||++++++ +.+.+... ......+++++.++.++|
T Consensus 210 g~g~~g~~-~~~~-~~---~~~pd----i~t~sK~l~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~a~l 278 (375)
T PRK04260 210 GMGRTGKL-YAFE-HY---GIEPD----IFTLAKGLA-NGVPVGAMLAKSS-LGGAFGYGSHGSTFGGNKLSMAAASATL 278 (375)
T ss_pred CCCcccch-hhhH-hh---CCCCC----EEEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHH
Confidence 75333322 1211 11 11334 338999998 8999999999755 43433321 122235788899988888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS 391 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~ 391 (477)
+..+. ++++++.++..+..++.+.+.+.+.+ +.... ..|+++|++++.. ..++.+.+. +.||.+.|+
T Consensus 279 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~--------~~~~~~~l~-~~Gi~v~~~- 346 (375)
T PRK04260 279 DIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTAD--------LSQLVEAAR-DKGLIVLTA- 346 (375)
T ss_pred HHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecCc--------HHHHHHHHH-hCCCEEecC-
Confidence 66443 45566667777777777877777664 33333 3689999998521 114555555 469999875
Q ss_pred CCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHH
Q 011801 392 SFQCTEPGWFRVCF-ANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~-~~~~~e~l~~~l~~l~~~ 423 (477)
+++.+|+++ ..++++++++++++|+++
T Consensus 347 -----~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 347 -----GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred -----CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 246799999 546999999999999875
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=191.90 Aligned_cols=212 Identities=19% Similarity=0.233 Sum_probs=150.2
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVP 162 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~ 162 (477)
....+|++++|++.+. ...+ +++++++|+.+++.+++++||.|+++.|+|++....+.. ..|+++..
T Consensus 61 p~~~~Le~~lA~~~g~---------~~~i-~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 61 PTRTALEEQLAALEGG---------AYGR-AFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred ccHHHHHHHHHHHhCC---------CceE-EeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 4678999999999872 1234 445668999999999999999999999999865443322 12777766
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++. .|++++++++.+ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+. .
T Consensus 131 ~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-~- 192 (388)
T PRK07811 131 VDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ-Q- 192 (388)
T ss_pred eCC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC-C-
Confidence 653 378889888754 7899999999999999877 888889999999999999999753221 1
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhccc-C-CCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSF-G-LVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~-~-~vs~~~q~~~~~~L~~~~~~~ 319 (477)
++. .+..++++|++|.++-+| .+.||++++++.+.+.++.+... + ..++...+++...|+.
T Consensus 193 --p~~---------~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t----- 256 (388)
T PRK07811 193 --PLA---------LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT----- 256 (388)
T ss_pred --chh---------hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----
Confidence 111 123478999999998654 57899998777776655544333 2 2344544555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+..+.++..++...+.+.|+++
T Consensus 257 --l~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 257 --LAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhC
Confidence 2233344456667777777765
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=191.61 Aligned_cols=294 Identities=18% Similarity=0.206 Sum_probs=208.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchH----HHHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFD----RDLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~ 159 (477)
+.+.|+++|+|++ .+ .++|++|.|+|+++++++.++ ..+||.|++..--|+... ...+. .|++
T Consensus 68 ~e~aRe~va~~~~--------a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~-~Ga~ 138 (405)
T COG0520 68 YEAAREAVARFLN--------ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR-TGAK 138 (405)
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHh-cCcE
Confidence 5789999999987 56 489999999999999999998 589999999998877543 33333 4999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
+..+|+++ +..++.++++..+.+ ++|+|.++.-+|.||++.+ +++|+++|+++|+++++|.+++. .
T Consensus 139 v~~i~~~~--~g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~---~ 204 (405)
T COG0520 139 VRVIPLDD--DGLLDLDALEKLITP------KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA---G 204 (405)
T ss_pred EEEEecCC--CCCcCHHHHHHhcCC------CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc---C
Confidence 99999873 457889999987654 8999999999999999999 99999999999999999999873 1
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCc-ccCCCCceEEEEEeCCHHHHHHHHHhcc----------------------
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSK-DMGLPGFRVGIVYSFNDTVVNCGRKMSS---------------------- 296 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK-~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------------------- 296 (477)
...+.+.+ .+..+++.|.+| .+| | -.+|.+++.++.+....-....
T Consensus 205 -h~~idv~~--------l~~Df~afsgHKwl~g-P-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rf 273 (405)
T COG0520 205 -HLPIDVQE--------LGCDFLAFSGHKWLLG-P-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRF 273 (405)
T ss_pred -ccCCCchh--------cCCCEEEEcccccccC-C-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhh
Confidence 11233332 355688999999 555 4 2499999977655443110000
Q ss_pred -cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC---ceEEEEeeccchhhccCchH
Q 011801 297 -FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN---AGLFFWMDLRHLLKEKTLEG 371 (477)
Q Consensus 297 -~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~---~g~~~~~~l~~~~~~~~~~~ 371 (477)
.++.+......+.+.+.--. +--+++..++.++..+++.+.|.++ +++++.+. .+-.+.+.++....
T Consensus 274 e~gTpn~~~~i~l~aAl~~~~--~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~------ 345 (405)
T COG0520 274 EAGTPNIAGAIGLAAALDYLL--EIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHP------ 345 (405)
T ss_pred ccCCchHHHHHhHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCH------
Confidence 01122222222233332111 1113556667777778888999887 68887653 23455566664311
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCC------CCCEEEEEeccC-CHHHHHHHHHHHHHHHh
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQCT------EPGWFRVCFANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~~------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
.++ ...|.+.||.++.|..|... .++.+|+|++.. |+||++.+++.|+++.+
T Consensus 346 -~dv-~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 346 -HDV-ATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred -HHH-HHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 133 44556679999999877531 234599999876 89999999999998764
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=191.21 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=153.8
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----hHHHHhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----FDRDLSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----~~~~~~~~ 155 (477)
.+|+++ ...+|++.+|++.+ .++.++ ++++++|+.+++..++++||.|+++.|.|++ +...+...
T Consensus 55 ~R~~~p-~~~~Le~~lA~l~g---------~~~~v~-~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~ 123 (405)
T PRK08776 55 TRSGNP-TRDLLGEALAELEG---------GAGGVI-TATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKG 123 (405)
T ss_pred cCCCCh-HHHHHHHHHHHHhC---------CCceEE-EcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhc
Confidence 344443 25688888888875 134555 4555799999999999999999999999987 33334434
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|++++.++. .|++++++++++ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|+.
T Consensus 124 -g~~v~~v~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 124 -HFALITADL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred -CcEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 888887764 267888887753 7899999999999999977 88899999999999999999974
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L 312 (477)
... +.++ .. +..+++.|++|.++-+ ++..|++++.++.+.+.+..... ...++++.++++...+
T Consensus 187 ~~~----~~pl-~~--------gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl 253 (405)
T PRK08776 187 PAL----QKPL-EF--------GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL 253 (405)
T ss_pred ccc----CCcc-cc--------cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 211 1121 11 2237889999999755 57889998877766554433221 1235677777666544
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+. +..+.++..++...+.+.|+++
T Consensus 254 ~t-------l~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 254 RT-------LDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred Cc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 43 4455666677778888888765
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=197.10 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=157.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----hHHHHhh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----FDRDLSW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----~~~~~~~ 154 (477)
..+|+.+ ...+|++++|++.+ .++.+++++++.|+..++.+++.+||.|+++...|++ +...++.
T Consensus 64 Y~r~~~p-~~~~le~~lA~l~g----------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~ 132 (403)
T PRK07810 64 YSRYGNP-TVSMFEERLRLIEG----------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR 132 (403)
T ss_pred eeCCCCc-hHHHHHHHHHHHhC----------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH
Confidence 3456654 36899999999986 3467788888899999998999999999998855543 3444555
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |++++.++. .|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 133 ~-G~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 133 W-GVETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred c-CcEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCC
Confidence 5 999888863 278889988864 7899999999999999998 8888889999999999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-ccc-CCCchHHHHHHHHh
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSF-GLVSSQTQYLLASM 311 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~-~~vs~~~q~~~~~~ 311 (477)
...+.. +. ..+..+++.|++|.++..|.++ |+|+++++.+...++.+ ... ..+++..++++...
T Consensus 196 ~~~~~~----~~---------~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~ 262 (403)
T PRK07810 196 TPLLQR----GL---------PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKG 262 (403)
T ss_pred ccccCC----hh---------hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 432221 11 1134578899999998788887 77887666554434332 222 24677777777777
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
|+.- ..+.++..+....+.+.|+++
T Consensus 263 L~tl-------~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 263 LETL-------ALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred cCcH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 7653 233334445555666777765
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=192.24 Aligned_cols=215 Identities=20% Similarity=0.239 Sum_probs=150.2
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~ 155 (477)
.+|+.+ ...+|++++|++.+ .+..++++++++|+.+++..+++|||.|+++.|.|..... .+...
T Consensus 60 ~r~~~p-~~~~le~~lA~l~g----------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~ 128 (403)
T PRK07503 60 SRISNP-TLALLEQRMASLEG----------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF 128 (403)
T ss_pred eCCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhC
Confidence 345443 36899999999986 1235666677889999999999999999999999975432 33444
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|+++..++.+ |++++++++++ ++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 129 -G~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~ 191 (403)
T PRK07503 129 -GVTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCT 191 (403)
T ss_pred -CEEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 8888888753 67888888754 7899999999999999998 78888888999999999999985
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--cc--cCCCchHHHHHHHH
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--SS--FGLVSSQTQYLLAS 310 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--~~--~~~vs~~~q~~~~~ 310 (477)
..+ .. ++ .. +..++++|+||.+|.+| .|.|+++.+ +.+.+.++.. .. ...++++.++++..
T Consensus 192 ~~~-~~---~l-~~--------g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~ 257 (403)
T PRK07503 192 PYL-QR---PL-EL--------GADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVMSPFDAFLLMR 257 (403)
T ss_pred ccc-CC---ch-hh--------CCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCCCHHHHHHHHc
Confidence 322 21 11 11 23478899999999766 788988864 4454444321 11 12356666666655
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
-|+.- ..+.++..++...+.+.|+++
T Consensus 258 ~L~tl-------~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 258 GLKTL-------ALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred CcchH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 55432 222233345556666677665
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=190.99 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=151.0
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~ 155 (477)
.+|+++ ...+|++++|++.+ .+..++++++++|+.+++.+++.+||.|+++.|.|+... ..+...
T Consensus 54 ~r~~~p-~~~~le~~lA~l~g----------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~ 122 (391)
T TIGR01328 54 SRLGNP-TVSNLEGRIAFLEG----------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKF 122 (391)
T ss_pred eCCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcC
Confidence 445544 35789999999987 234677888889999999999999999999999887543 333444
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|+++..++++ |++++++++.+ ++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 123 -G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 123 -GIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred -CeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCch
Confidence 8888888753 67888888754 7899999999999999998 77888888999999999999974
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh--c-ccC-CCchHHHHHHHH
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM--S-SFG-LVSSQTQYLLAS 310 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~--~-~~~-~vs~~~q~~~~~ 310 (477)
..+. . ++ ..+..++++|+||.+|.+|.++ |++++ ++.+.+.++.. . .++ .+++...+++..
T Consensus 186 ~~~~-~---~~---------~~g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~ 251 (391)
T TIGR01328 186 PMLT-N---PV---------ALGVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILR 251 (391)
T ss_pred hccC-C---ch---------hcCCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHh
Confidence 3221 1 11 1133378899999999889875 66666 44444444321 1 122 345555555555
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
-|+.- ..+.++..++.+.+.+.|+++
T Consensus 252 ~L~tl-------~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 252 GLKTL-------NIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred CcCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 45432 233444556667777777765
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=192.68 Aligned_cols=209 Identities=16% Similarity=0.212 Sum_probs=150.0
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
-..+|++.+|++.+ .+..++++++++|+..++.+++++||.|+++.|+|++.... +... |+++..
T Consensus 65 ~~~~le~~lA~l~g----------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~-Gi~v~~ 133 (398)
T PRK08249 65 TVQAFEEKVRILEG----------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRM-GVDVTL 133 (398)
T ss_pred HHHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhC-CeEEEE
Confidence 46899999999986 24566777778999999999999999999999999875433 3444 888776
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++. .|++++++++++ ++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..... .
T Consensus 134 vd~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~-~- 195 (398)
T PRK08249 134 CET-------GDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ-N- 195 (398)
T ss_pred cCC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC-C-
Confidence 652 478899888854 7899999999999999999 777888899999999999999854222 1
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhcc-c-CCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSS-F-GLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~-~-~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+. .. +..++++|+||.+|-+|.++ |++++ ++.+.+.++.... . ..+++..++++..-|+.
T Consensus 196 --~l-~~--------~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t----- 258 (398)
T PRK08249 196 --PL-AL--------GADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKT----- 258 (398)
T ss_pred --ch-hh--------CCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-----
Confidence 11 11 22367899999998677776 55555 5555554443322 2 23566666665555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
+..+.++..+..+.+.+.|+++
T Consensus 259 --L~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 259 --LKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 2333445556667777888765
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=192.20 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=154.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~ 154 (477)
..+|+++ ...+|++++|++.+ .+++++++|+++|+.+++.++++|||.|+++.|+|+.+.. .+..
T Consensus 59 Y~r~~~p-t~~~Le~~lA~l~g----------~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 127 (394)
T PRK07050 59 YGLHATP-TSLALAQRLAEIEG----------GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD 127 (394)
T ss_pred cCCCCCH-HHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh
Confidence 3455443 36788888888875 4689999999999999999999999999999999998664 3344
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |+++..++.. +.+++++++++ ++|+|++++|+||+|... ++++|+++|+++|+++|+|++|+
T Consensus 128 ~-Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~~~---di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 128 F-GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTMEVP---DVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred c-CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccHh---hHHHHHHHHHHcCCEEEEECCcc
Confidence 4 8888877632 34667777643 789999999999997554 59999999999999999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHh
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASM 311 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~ 311 (477)
...+- .+ + ..+..+++.|++|.++ ..+.+.|++++.++.+.+.++.... ...+++...+.+...
T Consensus 191 ~~~~~----~~---l------~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~ 257 (394)
T PRK07050 191 AGLAF----KP---F------EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRG 257 (394)
T ss_pred ccccc----CH---H------HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 42211 11 1 2244688999999996 3446789998877766665544333 233566666665555
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
|.+- ..+.++..++...+.+.|++.
T Consensus 258 l~tl-------~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 258 LPSL-------QVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred CCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 5542 223344445555677777765
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=188.99 Aligned_cols=292 Identities=13% Similarity=0.113 Sum_probs=175.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCC-eEEEcCCCccchHH---HHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGD-AFLVPSPYYAAFDR---DLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd-~vlv~~P~y~~~~~---~~~~~~g~~ 159 (477)
..++++.++++++ . +.+++++ +++|++.++..+. .+|+ .|++.+..|++-.. ..... +.+
T Consensus 93 ~~~l~~~la~~~~--------~--~~~~~~s-G~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~-~~~ 160 (402)
T PRK07505 93 LKDLEEALSELFG--------A--SVLTFTS-CSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICAD-ETE 160 (402)
T ss_pred HHHHHHHHHHHhC--------C--CEEEECC-hHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhc-CCe
Confidence 4677777777764 2 4455554 4668877765432 2232 36677766544221 11222 556
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++. .|++++++++++ +.+++++++|+||||.+++ +++|.++|+++++++|+||+|+...|+
T Consensus 161 v~~~~~-------~d~~~l~~~~~~------~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g 224 (402)
T PRK07505 161 VETIDH-------NDLDALEDICKT------NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYG 224 (402)
T ss_pred EEEeCC-------CCHHHHHHHHhc------CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcC
Confidence 666664 278888887753 4578999999999999999 677888899999999999999644444
Q ss_pred CCCcccHHHhhhhccC-CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC----CCchHHHHHHHHhcCC
Q 011801 240 SPKFTSVAEVIQEMDC-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG----LVSSQTQYLLASMLSD 314 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~-~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~----~vs~~~q~~~~~~L~~ 314 (477)
........... +. .++++++++||||.+|.+| ||++..++.+.+.+.+....+ .+++++..++.+.++-
T Consensus 225 ~~g~~~~~~~~---~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~ 298 (402)
T PRK07505 225 KNGEGYVRSEL---DYRLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEI 298 (402)
T ss_pred CCCCchHHHHc---CCCCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHH
Confidence 32111111111 11 3577899999999999776 888765666666555432221 2344555555555541
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ 394 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~ 394 (477)
.. ++.+.+..++++++.+.+...+... .....-++.++.++.. ....++.+.++ +.||.++++..+.
T Consensus 299 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~------~~~~~~~~~l~-~~Gi~v~~~~~p~ 365 (402)
T PRK07505 299 HL--SEELDQLQQKLQNNIALFDSLIPTE----QSGSFLPIRLIYIGDE------DTAIKAAKQLL-DRGFYTSPVFFPV 365 (402)
T ss_pred Hh--ccCcHHHHHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCCH------HHHHHHHHHHH-HCCCeEeeecCCC
Confidence 00 1123334455555554443322211 0112212234433311 11124666666 5599999874332
Q ss_pred C-CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 395 C-TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 395 ~-~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
. .++.++||+++.. +++++++++++|++++++
T Consensus 366 ~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 366 VAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 1 1236899999763 999999999999999865
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=189.78 Aligned_cols=284 Identities=14% Similarity=0.126 Sum_probs=186.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccchHHHHhhhCCcEEEE---EeccC--CCCcccCHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAFDRDLSWRTGVQIVP---VHCDI--SNNFKITREA 177 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~---v~~~~--~~~f~i~~~~ 177 (477)
.+++++++++++|++.+++... .....|+..+.+|++........++..... .++.. ..-...|+++
T Consensus 96 ~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 175 (406)
T PRK12381 96 ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNS 175 (406)
T ss_pred CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHH
Confidence 4689999999999999998742 234789999999988764433222321100 00000 0000126788
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~ 255 (477)
+++.+.+ ++++|++ +|.||+|-+. +.+.+++|.++|++||+++|+||+|.++.+.+..+ .. +.. +.
T Consensus 176 l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~-~~~---~v 243 (406)
T PRK12381 176 ASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AY-MHY---GV 243 (406)
T ss_pred HHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hh-Hhh---CC
Confidence 8877742 6777666 7999998765 78999999999999999999999998765554322 11 111 11
Q ss_pred CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 011801 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRH 333 (477)
Q Consensus 256 ~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~ 333 (477)
.++ +.||||.+| +|+|+||++++++ +.+.+... ......+++.+.++.+.|+-- + -.+..++++++.
T Consensus 244 ~pD----i~t~sK~l~-gG~~ig~~~~~~~-~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~ 312 (406)
T PRK12381 244 TPD----VLTTAKALG-GGFPIGAMLTTEK-CASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRH 312 (406)
T ss_pred CCC----EEEehhhhh-CCCceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHH
Confidence 233 349999999 9999999999654 44444321 121235778888877766321 1 123456677777
Q ss_pred HHHHHHHhhCC--Ce--EecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-C
Q 011801 334 HNFTKGLEQVG--IN--CLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-M 408 (477)
Q Consensus 334 ~~l~~~L~~~g--i~--~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~ 408 (477)
+++.+.|++++ .. ......|+++|+.++.... .....+... +.++||.+.++ +++++|++++. +
T Consensus 313 ~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~-l~~~Gv~v~~~------g~~~lRl~p~~~~ 381 (406)
T PRK12381 313 DWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQE-AAKAGVMVLIA------GPNVVRFAPALNI 381 (406)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHH-HHHCCcEEeeC------CCCEEEEeCCccC
Confidence 88888777653 21 1223457899998864210 111234444 45669999764 24689999976 5
Q ss_pred CHHHHHHHHHHHHHHHhhhh
Q 011801 409 DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~~~ 428 (477)
+++++++++++|++++++..
T Consensus 382 t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 382 SEEEITTGLDRFARACERFV 401 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997643
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=193.97 Aligned_cols=279 Identities=15% Similarity=0.173 Sum_probs=188.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC----CC-CeEEEcCCCccchHH---HHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN----PG-DAFLVPSPYYAAFDR---DLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~----~G-d~vlv~~P~y~~~~~---~~~~~~g~~ 159 (477)
+.++|+.+|++++ .++++|++|+|+++++..++..+.. +| +.|++....|+.+.. .++.. |++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~-G~~ 114 (353)
T TIGR03235 44 VERARKQVAEALG--------ADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERN-GFT 114 (353)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhc-CCE
Confidence 4688888888886 5688999999999999999888753 56 778888766665443 34444 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
++.++.+. ++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++++ +.
T Consensus 115 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~---~g 180 (353)
T TIGR03235 115 VTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQV---VG 180 (353)
T ss_pred EEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhh---cC
Confidence 99998763 467899999988753 6889999999999999999 7888999999999999999987 22
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH-HHHh---------cccCCCchHHHHHHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC-GRKM---------SSFGLVSSQTQYLLA 309 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~-~~~~---------~~~~~vs~~~q~~~~ 309 (477)
..+ ..+. ..+..+++.|.+|.+|.+| +|+++.+++.+... .... ...++.+.....++.
T Consensus 181 ~~~-~~~~--------~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 249 (353)
T TIGR03235 181 KIT-VDLS--------ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMG 249 (353)
T ss_pred Ccc-cccc--------ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHH
Confidence 221 1111 2234577789999887556 89998876532111 1100 012233333444444
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce---EEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG---LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g---~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
..+.. +...+++..++++++.+.+.+.|.+.|+++..+..+ -.+.+.++. .+. +.+...|++ +|.
T Consensus 250 ~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~------~~~--~~v~~~L~~-~i~ 317 (353)
T TIGR03235 250 EAAEI---ARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG------VNS--EALIVNLRA-DAA 317 (353)
T ss_pred HHHHH---HHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC------cCH--HHHHHHHhC-CeE
Confidence 44432 123456677889999999999998889887643221 133333332 111 233444555 999
Q ss_pred EeCCCCCCCCC--CCEEEEEeccCCHHHH
Q 011801 387 VSPGSSFQCTE--PGWFRVCFANMDDDTL 413 (477)
Q Consensus 387 v~pg~~f~~~~--~~~~Rl~~~~~~~e~l 413 (477)
|++|..|.+.. +.++|.+++. +++++
T Consensus 318 v~~g~~~~~~~~~~~~~l~~~g~-~~~~~ 345 (353)
T TIGR03235 318 VSTGSACSSSKYEPSHVLQAMGL-DTDRA 345 (353)
T ss_pred EEchhhcCCCCCCCCHHHHHcCC-CHHHh
Confidence 99999987543 3467777764 54444
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-20 Score=181.52 Aligned_cols=297 Identities=16% Similarity=0.155 Sum_probs=206.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
-+.+|.+.+|+|++ .+..++.+++-.|+..++.+|++++|.|+...-.+......++.. +.+++.+.-
T Consensus 85 ~h~~LE~~lA~f~g----------~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls-~a~~~~f~H- 152 (388)
T COG0156 85 LHVELEEELADFLG----------AEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLS-RAEVRRFKH- 152 (388)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhC-CCcEEEecC-
Confidence 35899999999997 345555555567999999999999999999999999888888876 999888773
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|++.||+.+++.+..+.+.+.|++..--.-.|.+.+ |++|++++++|+.++++||+|+-.+++... ..+
T Consensus 153 ------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~G-rG~ 222 (388)
T COG0156 153 ------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNG-RGL 222 (388)
T ss_pred ------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCC-ccH
Confidence 3789999999886533323455555555678999999 888999999999999999999976666433 343
Q ss_pred HHhhhhccCC-CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC---CchHHHHHHHHhcCChhhHHHHH
Q 011801 247 AEVIQEMDCN-RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL---VSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 247 ~~~~~~~~~~-~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~---vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
.+.. ++. .+..|+++||||+||..| ||+.++...+....++.++|.. .++....++...|+.- + ..
T Consensus 223 ~e~~---g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l---~-~~ 292 (388)
T COG0156 223 AEHF---GLEPEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRIL---E-EG 292 (388)
T ss_pred HHHh---CCCCccceEEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH---H-hC
Confidence 3332 222 455789999999999888 9999955544333344444432 2332222333333221 1 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWF 401 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~ 401 (477)
.+.+++++++...+...+...|+.+.++.. ..+.+-+.... ..+++...++++ ||.+.+...-.- .+...+
T Consensus 293 ~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s-~I~pv~~gd~~------~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarl 364 (388)
T COG0156 293 PERRERLQELAAFFRSLLKALGLVLLPSES-PIIPVILGDEE------RALEASRALLEE-GIYVSAIRPPTVPKGTARL 364 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCC-CeeeeEeCCHH------HHHHHHHHHHHC-CeeEeeecCCCCCCCcceE
Confidence 445677777778888777777887755555 35545454321 123566777777 999987644322 223579
Q ss_pred EEEecc-CCHHHHHHHHHHHHHH
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~ 423 (477)
|+|++. +++++++.+++.|.++
T Consensus 365 Ri~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 365 RITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred EEEecCCCCHHHHHHHHHHHHhh
Confidence 999965 4999999999998764
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=186.12 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=130.9
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~ 155 (477)
.+|+.+ -..+|++.+|++.+ .+..++++++++|+..++.+++++||.|+++.|.|++... .++..
T Consensus 52 sr~~~p-~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 120 (418)
T TIGR01326 52 SRLMNP-TTDVLEQRIAALEG----------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL 120 (418)
T ss_pred ECCCCh-hHHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHc
Confidence 445443 35899999999986 2467889999999999999999999999999999976433 34444
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|++++.++.+ |++++++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 121 -G~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~ 183 (418)
T TIGR01326 121 -GIEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFAT 183 (418)
T ss_pred -CcEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCch
Confidence 9998888742 68889888754 7899999999999999998 78888899999999999999973
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN 284 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~ 284 (477)
..+. .+ + ..+.++++.|+||.+|.+|.|+||+++++
T Consensus 184 ~~~~----~~---l------~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 184 PYLC----RP---I------DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred hhcC----Cc---h------hcCCeEEEECccccccCCccceEEEEEec
Confidence 2111 11 1 22467899999999999999999998854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-20 Score=187.07 Aligned_cols=283 Identities=14% Similarity=0.089 Sum_probs=176.3
Q ss_pred CcEEEeCChHHHHHHHHHHhc----------CCCCeEEEcCCCccchHHHHhhhCCcEEEE---EeccCCCCc----ccC
Q 011801 112 DRIVMGGGATGANELIMFCLA----------NPGDAFLVPSPYYAAFDRDLSWRTGVQIVP---VHCDISNNF----KIT 174 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~----------~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~---v~~~~~~~f----~i~ 174 (477)
+.+++++++++|++.++..+. ..++.|++.+-.|.+.....-...+..... .+.. .++ ..|
T Consensus 89 ~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d 166 (400)
T PTZ00125 89 DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFV--PGFELVDYND 166 (400)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCC--CCceEeCCCC
Confidence 588999999999999998763 134788888888877543322111211100 0000 000 127
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 175 REALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
+++++++++. .++++|++..++||||.+++ .+.+++|.++|++||+++|+||+|.++...+..+ .. ...
T Consensus 167 ~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~-~~-~~~--- 236 (400)
T PTZ00125 167 VEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL-AH-DHE--- 236 (400)
T ss_pred HHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-HH-Hhc---
Confidence 8999988851 27899988888999999986 4569999999999999999999998754444321 11 111
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAK 331 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~ 331 (477)
+..++ + .++||.++.+++|+||++++++. .+.+... ......++++|.++.+.|+.-. +. ...+++++
T Consensus 237 ~~~pd--~--~~~sK~l~~g~~~ig~v~~~~~~-~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~--~~---~~~~~~~~ 306 (400)
T PTZ00125 237 GVKPD--I--VLLGKALSGGLYPISAVLANDDV-MLVIKPGEHGSTYGGNPLACAVAVEALEVLK--EE---KLAENAQR 306 (400)
T ss_pred CCCCC--E--EEEcccccCCCcCcEEEEEcHHH-HhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--hc---CHHHHHHH
Confidence 11223 2 25789998433599999996654 4433321 1122356777777766553211 00 11223333
Q ss_pred HHHHHHHHHhh----CCC-eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec
Q 011801 332 RHHNFTKGLEQ----VGI-NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406 (477)
Q Consensus 332 r~~~l~~~L~~----~gi-~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~ 406 (477)
+.+.+.+.|++ .++ .... ..|.++|+.++... . ....++++.++ ++||.+.|+. ++++|++..
T Consensus 307 ~~~~l~~~l~~l~~~~~~~~~~~-~~g~~~~v~~~~~~---~-~~~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~ 374 (400)
T PTZ00125 307 LGEVFRDGLKELLKKSPWVKEIR-GKGLLNAIVFDHSD---G-VNAWDLCLKLK-ENGLLAKPTH------DNIIRFAPP 374 (400)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEe-cccEEEEEEEccCc---c-hHHHHHHHHHH-HCCeEEeecC------CCEEEEECC
Confidence 44444444443 233 2233 35688888876310 1 12235667766 5599998862 568999975
Q ss_pred c-CCHHHHHHHHHHHHHHHhhhh
Q 011801 407 N-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 407 ~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
. .+++++++++++|.+++++..
T Consensus 375 ~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 375 LVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHh
Confidence 4 599999999999999987653
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=182.71 Aligned_cols=211 Identities=18% Similarity=0.225 Sum_probs=148.5
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh--hCCcEEEEEe
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW--RTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~--~~g~~~~~v~ 164 (477)
...+|++++|++++ .+++++++|+++|+..++.+++++||.|+++.|.|+.+...+.. ..|+++..+.
T Consensus 54 ~~~~lE~~lA~l~g----------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~ 123 (385)
T PRK08574 54 TLRPLEEALAKLEG----------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY 123 (385)
T ss_pred cHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence 57899999999986 35788889999999999999999999999999999987655432 1277765543
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++.+++++++++. ++|+|++++|+||||.+++ +++|+++|+++|+++|+|++|+.... . .
T Consensus 124 --------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~-~---~ 183 (385)
T PRK08574 124 --------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLL-Y---R 183 (385)
T ss_pred --------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc-C---C
Confidence 3578888877531 6899999999999999999 77889999999999999999963211 1 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhcc-cC-CCchHHHHHHHHhcCChhhHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSS-FG-LVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~-~~-~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
++ ..+..+++.|+||.++-+|-.+ |++++.++.+.+.++..+. ++ .++++..+++..-|+.-
T Consensus 184 ~l---------~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL------ 248 (385)
T PRK08574 184 PL---------RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTL------ 248 (385)
T ss_pred hh---------hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH------
Confidence 11 1134588999999997666554 6677766666555443322 33 24555444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
..+.++..+....+.+.|+++
T Consensus 249 -~~R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 249 -EVRFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred -HHHHHHHHHHHHHHHHHHHcC
Confidence 222333344556667777655
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=189.09 Aligned_cols=286 Identities=15% Similarity=0.142 Sum_probs=185.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC---------CC-CeEEEcCCCccchHHHHhhhCC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN---------PG-DAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~---------~G-d~vlv~~P~y~~~~~~~~~~~g 157 (477)
..+|.+.++++.+ .+++++++++++|++.++.++.. +| +.|++..-+|.+....+....+
T Consensus 85 ~~~l~~~l~~~~~----------~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~ 154 (401)
T PRK00854 85 LAPLYEELAALTG----------SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFST 154 (401)
T ss_pred HHHHHHHHHhhCC----------CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccC
Confidence 4556666666543 35899999999999999988742 23 6788888777765433221100
Q ss_pred ------------cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcC
Q 011801 158 ------------VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKN 224 (477)
Q Consensus 158 ------------~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~ 224 (477)
..+..++. .|++++++++.+ ++++|++++|+||+|.+++.+ .+++|.++|++||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~g 221 (401)
T PRK00854 155 DPDARGGFGPFTPGFRVVPF-------GDAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANN 221 (401)
T ss_pred CccccccCCCCCCCeEEeCC-------CCHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 11222221 368888888753 789999999999999999754 5999999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhcc--cCCCc
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSS--FGLVS 301 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~--~~~vs 301 (477)
+++|+||+|.++.+.+..+ .. ... +..++.+ .+||.++ .| +|+|+++++++. .+.+..... ....+
T Consensus 222 i~lI~DEv~~g~g~~g~~~-~~-~~~---g~~~D~~----~~~K~l~-gg~~~ig~v~~~~~~-~~~l~~~~~~~t~~~~ 290 (401)
T PRK00854 222 VTLILDEIQTGLGRTGKLL-AE-EHE---GIEADVT----LIGKALS-GGFYPVSAVLSNSEV-LGVLKPGQHGSTFGGN 290 (401)
T ss_pred CEEEEechhhCCCCCchHh-HH-hhc---CCCCCEE----Eeccccc-CCccCeEEEEEcHHH-HhcccCCCCCCCCCcC
Confidence 9999999998754443211 11 111 1123322 2469997 55 799999996654 333332211 12257
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE---ecCCceEEEEeeccchhhccCchHHHHHHHH
Q 011801 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC---LKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~---~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
++.|.++.+.|+..+ . ....+.++++.+++.+.|++.+..+ ..+.+ .++.+.+... . ....++++.
T Consensus 291 ~~~~aa~~a~L~~l~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g-~~~~i~~~~~--~---~~~~~~~~~ 359 (401)
T PRK00854 291 PLACAVARAALKVLT---E--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRG-LMLAVELEPE--A---GGARQYCEA 359 (401)
T ss_pred HHHHHHHHHHHHHHH---H--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccc-eEEEEEEecC--c---hhHHHHHHH
Confidence 788888877775321 1 2234566777788888888765322 23344 4444444321 0 112256677
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+++ .||.+.+. +++++|+++.. .+++++++++++|++++.
T Consensus 360 L~~-~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 360 LKE-RGLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred HHH-CCeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 765 59999753 24689999864 499999999999999874
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=183.15 Aligned_cols=280 Identities=16% Similarity=0.152 Sum_probs=182.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~v 163 (477)
..+|++++|++.+. +..+++++++.|+.+++.++++|||.|+++.+.|++.. ..+... |+++..+
T Consensus 65 ~~~le~~lA~l~g~----------~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (389)
T PRK05968 65 VRAFEEMLAKLEGA----------EDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM-GVEVDYV 133 (389)
T ss_pred HHHHHHHHHHHhCC----------CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CceEEEe
Confidence 57999999999861 23444556678999999889999999999999998643 344545 9998887
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+ |++++++++. ++|+|++++|+||++. ..++++|.++|+++|+.+|+|++|+...+..
T Consensus 134 d~~-------d~~~l~~~i~-------~tklV~ie~pt~~~~~---~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--- 193 (389)
T PRK05968 134 DGR-------DEEAVAKALP-------GAKLLYLESPTSWVFE---LQDVAALAALAKRHGVVTMIDNSWASPVFQR--- 193 (389)
T ss_pred CCC-------CHHHHHHhcc-------cCCEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcchhccC---
Confidence 642 6788887762 6789999977766654 4669999999999999999999997543222
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-c-cc-CCCchHHHHHHHHhcCChhhHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-S-SF-GLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-~-~~-~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
++ ..+..++++|+||.++.+| .+.|+++++++.+ +.+++. . .. +.+++..++++...|+.-
T Consensus 194 -p~---------~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~-~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl---- 258 (389)
T PRK05968 194 -PI---------TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHI-ARINAEAYPYLGAKLSPFEAWLLLRGLRTL---- 258 (389)
T ss_pred -ch---------hcCCcEEEeeccccccCCCCeEEEEEEECHHHH-HHHHHHHHHhCCCCCChHHHHHHHcccCcH----
Confidence 11 1123477889999998655 5889988755544 333321 1 12 346666666666666542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-C-----------CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GINCLK-S-----------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~-----------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
..+.++..+..+.+.+.|+++ ++.... | ..|-.+.+++..... ..+++..+ +..++.
T Consensus 259 ---~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~------~~~f~~~L-~~~~~~ 328 (389)
T PRK05968 259 ---PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGID------VRAFADAL-KLFRLG 328 (389)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHH------HHHHHHhC-CccEEe
Confidence 222333344556677778776 453222 2 123345566653211 12344444 344666
Q ss_pred EeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 387 VSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 387 v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++-|..+.. ..++.+|+|++. |+.+.+++-|++++++
T Consensus 329 ~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 329 VSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred cCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 666655440 015689999996 4566667777777754
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=181.48 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=155.3
Q ss_pred ccCCC--CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hh
Q 011801 81 IFQDY--HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SW 154 (477)
Q Consensus 81 ~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~ 154 (477)
.|... .+...|+++||++.+ .+++++++|+++|+..++.+++++||.|++++|.|+++...+ ..
T Consensus 54 ~Y~r~~npt~~~Le~~iA~le~----------~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 54 FYGRRGTPTHFAFQAAIVELEG----------GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred eecCCCCchHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 35553 345699999999864 246899999999999999999999999999999998876543 33
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |+++..++.+ +.+++++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 124 ~-Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 124 F-GIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred c-ceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCcc
Confidence 3 7887766532 35667777643 7999999999999988755 8999999999999999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHh-c-ccCCCchHHHHHHHHh
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKM-S-SFGLVSSQTQYLLASM 311 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~-~-~~~~vs~~~q~~~~~~ 311 (477)
..+. - .++ ..+..+++.|.+|.+ |..+...|+++.+ +.+.+.++.. . ....+++...+.+..-
T Consensus 187 ~p~~-~---~Pl---------~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rg 252 (394)
T PRK09028 187 SPIN-S---RPF---------EMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSPDDVYLAMRG 252 (394)
T ss_pred cccc-C---Ccc---------ccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence 4211 1 111 235568999999998 5556778877654 4333323322 1 2234677777777777
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
|+.- .-+.++..++...+.+.|+++
T Consensus 253 l~TL-------~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 253 LRTL-------GVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred cCcH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 7663 333445566777788888876
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=184.75 Aligned_cols=278 Identities=17% Similarity=0.226 Sum_probs=178.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~v 163 (477)
..+|++.+|++.+ .+ +.+++++| +.|+.+++. ++++||.|+++.|.|++.. ..++.. |+++..+
T Consensus 56 ~~~le~~lA~l~g--------~~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~-G~~v~~v 123 (390)
T PRK08064 56 REALEDIIAELEG--------GT-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTFV 123 (390)
T ss_pred HHHHHHHHHHHhC--------CC-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHc-CCEEEEE
Confidence 5789999999986 22 45666555 668888876 6789999999999998544 334445 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+ |++++++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.....
T Consensus 124 ~~~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~---- 183 (390)
T PRK08064 124 DMT-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ---- 183 (390)
T ss_pred CCC-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc----
Confidence 753 57888887754 7899999999999999988 778888899999999999999743211
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcc-cCC-CchHHHHHHHHhcCChhhHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSS-FGL-VSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~-~~~-vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.++ + .+..+++.|+||.++ .+|...|++++.++.+.+.++.... ++. .++...+.+..-+..
T Consensus 184 ~~~-~--------~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~t------ 248 (390)
T PRK08064 184 KPL-D--------LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKT------ 248 (390)
T ss_pred Cch-h--------hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc------
Confidence 111 1 134578899999985 3456678888766666666655444 332 233333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-C-eEec----------------CCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVG-I-NCLK----------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~----------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+..+.++..+....+.+.|++.+ + .++- ...|-.+.+++... +-...+++.
T Consensus 249 -l~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~----------~~~~~f~~~ 317 (390)
T PRK08064 249 -LHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE----------EAVRQFVSH 317 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH----------HHHHHHHHh
Confidence 33444455666667777777652 1 1110 11233555666421 123455666
Q ss_pred cCe---EEeCCCCC----------CC-----------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 383 VKL---NVSPGSSF----------QC-----------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI---~v~pg~~f----------~~-----------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++ .++-|..+ ++ ..++.+|+|++. |+.+.+++.|.+++++
T Consensus 318 l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl---e~~~dli~dl~~Al~~ 382 (390)
T PRK08064 318 VKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL---ENVDDLIADFEQALSY 382 (390)
T ss_pred CCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 676 44545211 11 125789999996 4455556666666654
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=184.67 Aligned_cols=296 Identities=13% Similarity=0.151 Sum_probs=190.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
..+|+.+ ...+|++++|++.+ .+++++++|+++|+.+++. ++++||.|+++.+.|.+....+... ..
T Consensus 48 Y~R~~~p-~~~~le~~lA~leg----------~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~-~~ 114 (364)
T PRK07269 48 YTRTKNP-TRAKLEETLAAIES----------ADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQ-EK 114 (364)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHH-Hh
Confidence 3455544 47899999999985 5789999999999999984 5699999999999998665433221 00
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+. .+.. .|..|++++++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+
T Consensus 115 ~~-~~~~----~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 115 EG-RFHF----TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred cC-cEEE----EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc
Confidence 00 1111 234578999888864 7899999999999999987 88889999999999999999864322
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCCh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~ 315 (477)
. . ++ .....++++|++|.++-+| .=.|+|+++++.+.+.++..... ..+++...+++..-|+.-
T Consensus 181 ~-~---pl---------~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL 247 (364)
T PRK07269 181 Q-R---PI---------ELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL 247 (364)
T ss_pred C-C---ch---------hhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH
Confidence 1 1 11 1133488999999996333 23578888666665555433322 235777777777777652
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-CC-eEe-cCCceEEEEeeccchhhccCchHHHHH---HHHHHHhcCeEEeC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV-GI-NCL-KSNAGLFFWMDLRHLLKEKTLEGEIAL---WRTIVNDVKLNVSP 389 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi-~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l---~~~ll~~~gI~v~p 389 (477)
..+.++..++...+.+.|+++ ++ .+. ++.+|++.+ .+........|.+.+++ +..+-....+.+.|
T Consensus 248 -------~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf-~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p 319 (364)
T PRK07269 248 -------SLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISF-KVADETRIPHILNSLKVFTFAESLGGVESLITYP 319 (364)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEE-EECCHHHHHHHHHhCCcceEccCCCCcCeEeeCC
Confidence 333444456667777778776 33 343 666776544 44321100011111111 11222233556667
Q ss_pred CCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 390 GSSFQCT-----------EPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 390 g~~f~~~-----------~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
++.++.. .++.+|++++. |+.+.+++-|.++++
T Consensus 320 ~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 320 TTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE 363 (364)
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence 6554321 25689999995 566777887777664
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=181.81 Aligned_cols=174 Identities=17% Similarity=0.334 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~ 168 (477)
++++++++++.+..| .+++++|+|+|+|+.+++.++ .+|||.|+++.|+|+.+...+... |++++.++++.
T Consensus 31 ~~~~~~e~~la~~~g------~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~-G~~~v~vd~d~- 102 (376)
T TIGR02379 31 PFSRRCETWLENRTG------TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIRP- 102 (376)
T ss_pred HHHHHHHHHHHHHhC------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEecCC-
Confidence 556666666655433 578999999999999999887 799999999999999988888776 99999999985
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~~s~~ 247 (477)
++|.+|++++++++.+ ++|+|+ |+||+|...+ +++|.++|+++|++||+|++|+... +++....+
T Consensus 103 ~~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~-- 168 (376)
T TIGR02379 103 DTMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALGS-- 168 (376)
T ss_pred CcCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccCC--
Confidence 4588999999998764 788876 6678999988 7788889999999999999998432 33322111
Q ss_pred HhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcc
Q 011801 248 EVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 296 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~ 296 (477)
+ . .+.+.|| +|.+. +|.+.|+++++++.+.+.++.++.
T Consensus 169 -~--------~-~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 169 -I--------G-HLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred -C--------C-CEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHH
Confidence 0 1 1223343 38885 788999999988887777665544
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=183.18 Aligned_cols=288 Identities=16% Similarity=0.101 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---C------C------CCeEEEcCCCccchHHHHhh
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---N------P------GDAFLVPSPYYAAFDRDLSW 154 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~------~------Gd~vlv~~P~y~~~~~~~~~ 154 (477)
+....+|+.+.+.. ..+++++++++++|++.+++.-. . + ..+|+...-+|++....+..
T Consensus 57 ~~~~~la~~l~~~~------~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s 130 (382)
T PLN00144 57 IPQVELAKRLVASS------FADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALA 130 (382)
T ss_pred HHHHHHHHHHHhcC------CCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHh
Confidence 44455666554321 24689999999999999887631 1 0 24689889888886543332
Q ss_pred hCCcE------------EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC--HHHHHHHHHHH
Q 011801 155 RTGVQ------------IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD--RDTLKSLVSFI 220 (477)
Q Consensus 155 ~~g~~------------~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~--~~~l~~l~~~~ 220 (477)
.++-. +..++. -|++++++.++. .++++|++.--+|| |.+++ .+.+++|.++|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~-----~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~ 197 (382)
T PLN00144 131 LTSKEQYRTPFEPLMPGVTFVEY-------GNLEAARKLIQK-----GKTAAVFVEPVQGE-GGIYPATKEFLQGLRALC 197 (382)
T ss_pred cCCCccccccCCCCCCCeEEeCC-------CCHHHHHHhcCC-----CCeEEEEEccccCC-CCCccCCHHHHHHHHHHH
Confidence 21211 111111 167888877742 26777665533788 54444 44599999999
Q ss_pred HhcCeEEEecccccccccCCCCccc-HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hccc
Q 011801 221 NDKNIHLVCDEIYAATVFSSPKFTS-VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSF 297 (477)
Q Consensus 221 ~~~~~~lI~De~y~~~~~~~~~~~s-~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~ 297 (477)
++||+++|+||+|.++...+..+.. ...+ .+| +.||||.++ +|+|+|+++++++ +.+.+.. ..+-
T Consensus 198 ~~~g~llI~DEv~tg~gr~g~~~~~~~~~~------~PD----i~t~sK~l~-~G~pig~v~~~~~-~~~~~~~~~~~~T 265 (382)
T PLN00144 198 DEAGALLVFDEVQCGLGRTGYLWAHEAYGV------EPD----IMTLAKPLA-GGLPIGAVLVTEK-VASAINPGDHGST 265 (382)
T ss_pred HHcCCEEEEechhhCCCccchHhhhhhcCC------CCC----EEEeccccc-CCcceEEEEEcHH-HHhccCCCCCCCC
Confidence 9999999999999986555432211 1111 344 669999998 9999999999655 4433321 1222
Q ss_pred CCCchHHHHHHH---HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHH
Q 011801 298 GLVSSQTQYLLA---SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 298 ~~vs~~~q~~~~---~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+..+++++.++. .+++++++ .+++++..+.++ +.+.+.+.+.+....-...|+++|+.+.. . ...
T Consensus 266 ~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~---~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--~------~~~ 333 (382)
T PLN00144 266 FAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYLR---ELLRRKLGGNPHVKEVRGVGLLVGIQLDV--P------AGP 333 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHH---HHHHHHHhhCCCceeeecCceEEEEEecC--c------cHH
Confidence 236778888877 55566655 455666555553 33444455543211112378999999831 1 124
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++..++ +.||.+.|+.. ...+|++++. ++++++++++++|.+++.+
T Consensus 334 ~~~~~~-~~Gv~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 334 LVDACR-DSGLLVLTAGK-----GDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred HHHHHH-HCCeEEeecCC-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 555555 56999998721 3689999988 6999999999999999865
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=185.56 Aligned_cols=280 Identities=16% Similarity=0.197 Sum_probs=188.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccchHHH---HhhhCCcEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAAFDRD---LSWRTGVQI 160 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~ 160 (477)
+.++|+.++++++ .++++|++|+|+|+++.+++..+ .++||.|++....|+.+... ++.. |+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~-g~~v 115 (364)
T PLN02651 45 VEKARAQVAALIG--------ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQE-GFEV 115 (364)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhc-CCEE
Confidence 4577888888876 56789999999999988877554 47899999998777765433 3334 8899
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
+.++++. ++.+|++++++++++ +++++++++++||||.+.+ +++|.++|+++|+++++|.+++. ..
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~---g~ 181 (364)
T PLN02651 116 TYLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAV---GK 181 (364)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhh---CC
Confidence 8888763 467899999998864 7889999999999999999 78889999999999999999973 22
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhc
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASML 312 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L 312 (477)
-+ ..+. ..+..+++.|.+|.+| ...+|+++..++......... ...++.+.....++.+.|
T Consensus 182 ~~-~~~~--------~~~~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al 250 (364)
T PLN02651 182 IP-VDVD--------DLGVDLMSISGHKIYG--PKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAAC 250 (364)
T ss_pred cc-cCcc--------cCCCCEEEechhhhCC--CCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHH
Confidence 11 1211 2244578889999654 345899988664332111001 112334444445555554
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeEecCCc-----eEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINCLKSNA-----GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~~~~~~-----g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
+- +.+..++..++.++..+++.+.|++ + |+++..+.. ...+.+.++.. + .+ ++...| .+ |
T Consensus 251 ~~---~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~-----~~-~~~~~L-~~--i 317 (364)
T PLN02651 251 EL---AMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV-E-----GE-SLLMGL-KE--V 317 (364)
T ss_pred HH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC-C-----HH-HHHHHh-CC--E
Confidence 32 2223455667777788888888875 3 777765411 12444445421 1 11 344444 43 9
Q ss_pred EEeCCCCCCCC-----------------CCCEEEEEeccC-CHHHHH
Q 011801 386 NVSPGSSFQCT-----------------EPGWFRVCFANM-DDDTLQ 414 (477)
Q Consensus 386 ~v~pg~~f~~~-----------------~~~~~Rl~~~~~-~~e~l~ 414 (477)
.++.|+.|... ..+.+|+|++.. |++|+|
T Consensus 318 ~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 318 AVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 99999877543 137899999876 777764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-19 Score=179.44 Aligned_cols=296 Identities=14% Similarity=0.149 Sum_probs=190.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc--------------CCCCeEEEcCCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--------------NPGDAFLVPSPY 144 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~--------------~~Gd~vlv~~P~ 144 (477)
+..|.+++ .+|.+++|+|++ .+..++.+.+..|+..++.+|+ +++|.|+...-.
T Consensus 142 ~~G~~~~h--~~LE~~LA~f~g----------~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~ 209 (476)
T PLN02955 142 ICGYTTYH--RLLESSLADLKK----------KEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALN 209 (476)
T ss_pred cccChHHH--HHHHHHHHHHHC----------CCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccc
Confidence 44454443 789999999997 3566777777888888888872 456778887778
Q ss_pred ccchHHHHhhhC---CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHH
Q 011801 145 YAAFDRDLSWRT---GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTTLDRDTLKSLVSFI 220 (477)
Q Consensus 145 y~~~~~~~~~~~---g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~ 220 (477)
|......++... +++++.++. -|++.|++.+++.. .+.+ ++++.+ -++.|.+.+ +++|.++|
T Consensus 210 HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L~~~~---~~~~-~Vv~EgV~SmdGdiap---L~eL~~L~ 275 (476)
T PLN02955 210 HASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLLSSCK---MKRK-VVVTDSLFSMDGDFAP---MEELSQLR 275 (476)
T ss_pred hHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHHHhCC---CCce-EEEEeCCCCCCCCcCC---HHHHHHHH
Confidence 877776666431 366666552 27899999987542 1334 455555 689999999 77788888
Q ss_pred HhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-ccc--
Q 011801 221 NDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSF-- 297 (477)
Q Consensus 221 ~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~-- 297 (477)
++||+++|+||+|+..+++... ....+.. +...+..++++||||++|..| ||++++++ +.+.++.. .++
T Consensus 276 ~~~ga~LiVDEAH~~Gv~G~~G-~G~~e~~---g~~~di~ii~~TLsKA~G~~G---Gfi~gs~~-~~~~l~~~~~~~if 347 (476)
T PLN02955 276 KKYGFLLVIDDAHGTFVCGENG-GGVAEEF---NCEADVDLCVGTLSKAAGCHG---GFIACSKK-WKQLIQSRGRSFIF 347 (476)
T ss_pred HHcCcEEEEcccccCceecCCC-CcHHHHh---CCCCCCcEEEEeCccchhccC---ceeecHHH-HHHHHHHhCCCCee
Confidence 8999999999999976665422 3333322 224577899999999998777 99999654 45555433 232
Q ss_pred CCCchHHH-HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHH
Q 011801 298 GLVSSQTQ-YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 298 ~~vs~~~q-~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
++..++.. .++.+.+. .+.. -...+++|.++.+++.+. .|+.+. ...+.+.+... ....+++
T Consensus 348 Stalpp~~aaa~laal~---l~~~-~~~~r~~L~~n~~~fr~~---~G~~~~----sPI~pI~ig~~------~~a~~~~ 410 (476)
T PLN02955 348 STAIPVPMAAAAYAAVV---VARK-EKWRRKAIWERVKEFKAL---SGVDIS----SPIISLVVGNQ------EKALKAS 410 (476)
T ss_pred cccccHHHHHHHHHHHH---HHhc-CHHHHHHHHHHHHHHHHh---cCCCCC----CCEEEEEeCCH------HHHHHHH
Confidence 22222222 22222221 1111 123456777777777763 365531 23333444422 2223566
Q ss_pred HHHHHhcCeEEeCCCCCCC-CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQC-TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.|++ .||.+.+...-.. .+...+|+++.. .++++++.+++.|+++.+.
T Consensus 411 ~~L~~-~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 411 RYLLK-SGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred HHHHH-CCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 66665 5999986543322 223479999965 4999999999999988765
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=182.22 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=125.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~v 163 (477)
...|.+.+|++.+ .+..++++|+++|+..++..++++||.|+++.|.|++... .++.. |++++.+
T Consensus 66 ~~~Le~~lA~leg----------~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~-Gv~v~~v 134 (431)
T PRK08248 66 TDVFEKRIAALEG----------GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKL-GITVKFV 134 (431)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhC-CEEEEEE
Confidence 5788888999876 3567889999999999999999999999999999976433 34445 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.. |++++++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.. +. .
T Consensus 135 d~~-------d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~---~ 194 (431)
T PRK08248 135 DPS-------DPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YL---L 194 (431)
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-cc---C
Confidence 752 68888888754 7899999999999999999 678888999999999999998621 11 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeC
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSF 283 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~ 283 (477)
.++ ..+..+++.|++|.+|.+|.++|++++.
T Consensus 195 ~pl---------~~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 195 RPI---------EHGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred Chh---------HcCCCEEEEcCccccCCCCCceEEEEEe
Confidence 111 1245688899999999999999998774
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-19 Score=178.85 Aligned_cols=214 Identities=19% Similarity=0.241 Sum_probs=148.4
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRT 156 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~ 156 (477)
+|+++ -..+|++.+|++.+ . ...+++++| +.++..++ .+++|||.|+++.|.|++... .+...
T Consensus 46 r~~~p-~~~~Le~~lA~l~g--------~-~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~- 112 (377)
T PRK07671 46 RTGNP-TRAALEELIAVLEG--------G-HAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRF- 112 (377)
T ss_pred CCCCh-HHHHHHHHHHHHhC--------C-CceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcC-
Confidence 44433 36799999999986 1 234665555 56887765 577899999999999985433 23334
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|++++.++. .|++++++++++ ++|+|++++|+||||.+.+ +++|.++|+++|+++|+|++|+..
T Consensus 113 G~~v~~v~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 113 GIEHTFVDT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CeEEEEECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence 888888763 278889888854 7899999999999999987 778888889999999999999753
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcC
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLS 313 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~ 313 (477)
.+.. ++ ..+..++++|+||.+|-++ .-.|++++.++.+.+.++.++.. +..++...+.+..-+.
T Consensus 177 ~~~~----p~---------~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~ 243 (377)
T PRK07671 177 YWQS----PI---------SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK 243 (377)
T ss_pred ccCC----hh---------hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence 2321 11 1133588999999997443 45677777666666655554444 3355555554444333
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
. +..+.++..++...+.+.|++.
T Consensus 244 t-------l~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 244 T-------LGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 3 3334555667777888888765
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-19 Score=178.83 Aligned_cols=281 Identities=16% Similarity=0.168 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v 163 (477)
..+|++.+|++++ .++++++++++.|+.+++. ++++||.|+++.+.|+++... +... |++++.+
T Consensus 49 ~~~le~~la~l~g----------~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~-G~~v~~v 116 (378)
T TIGR01329 49 RTALESLLAKLDK----------ADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRS-GVVVVHV 116 (378)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHc-CcEEEEe
Confidence 4566777777664 2466667777789998776 779999999999999887553 3334 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++ |++++++++++ ++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+.. .. .
T Consensus 117 d~~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~-~~---~ 176 (378)
T TIGR01329 117 DTT-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSP-LL---C 176 (378)
T ss_pred CCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccc-cc---C
Confidence 753 68889888753 7899999999999999998 889999999999999999998532 11 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhcc-cC-CCchHHHHHHHHhcCChhhHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMSS-FG-LVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~~-~~-~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.++ . .+..++++|++|.++- .+.+.|++++.++.+.+.++.... .+ ..++...+.+..-++.-
T Consensus 177 ~~l-~--------~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl----- 242 (378)
T TIGR01329 177 NPL-E--------LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL----- 242 (378)
T ss_pred Chh-h--------cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH-----
Confidence 121 1 1334888999998853 347899999877666554443332 22 34555555444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-C-eEec----------------CCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVG-I-NCLK----------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~----------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
..+.++..++...+.+.|+++. + .+.- ...|-.+.+++.. . +...++...+ +.
T Consensus 243 --~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-~-----~~~~~~~~~L-~~ 313 (378)
T TIGR01329 243 --AIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS-V-----ALSKRLVEAT-KL 313 (378)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-H-----HHHHHHHHhC-cC
Confidence 2223333444455555665541 1 1110 1123355566632 1 1112344444 55
Q ss_pred cCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++.++-|..... ..++.+|++++. |+.+.+++-|.+++++
T Consensus 314 ~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 314 FSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVT 375 (378)
T ss_pred cccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 6777777765421 125689999995 5677778888887764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=174.43 Aligned_cols=298 Identities=19% Similarity=0.246 Sum_probs=211.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHH--hcC----CCCeEEEcCCCccchHHHHhhh--CCc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC--LAN----PGDAFLVPSPYYAAFDRDLSWR--TGV 158 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~--l~~----~Gd~vlv~~P~y~~~~~~~~~~--~g~ 158 (477)
.+.+-|+.||+.++ ++|++|++|+|+||++++++.. ... .|..|++..--++.....+++. -|.
T Consensus 45 ~ve~AR~~iA~llg--------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~ 116 (386)
T COG1104 45 AVEEAREQIAKLLG--------ADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGF 116 (386)
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCC
Confidence 36788888999887 6789999999999999999987 322 4778999888888877666543 388
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
++..++++. +..+|+++|++++++ ++.+|-+...||-+|++.| +++|.++|+++++++++|.+.+ +
T Consensus 117 ~Vtyl~V~~--~G~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa---~ 182 (386)
T COG1104 117 EVTYLPVDS--NGLVDLEQLEEALRP------DTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQA---V 182 (386)
T ss_pred eEEEeCCCC--CCeEcHHHHHHhcCC------CceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhh---c
Confidence 999999886 447999999999975 7888889999999999999 8889999999999999999997 4
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-HH------HHhcccCCCchHHHHHHHHh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN-CG------RKMSSFGLVSSQTQYLLASM 311 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~-~~------~~~~~~~~vs~~~q~~~~~~ 311 (477)
+.-+ ..+.. ........|-+|..|.-| +|.++..+..-.. .+ +.+++ ++.+.+.-.++..+
T Consensus 183 Gkip-i~~~~--------~~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~Rs-GTenv~~Ivg~~~A 250 (386)
T COG1104 183 GKIP-IDLEE--------LGVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRS-GTENVPGIVGFGKA 250 (386)
T ss_pred Ccee-ccccc--------cCcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCC-CCccHHHHHHHHHH
Confidence 4322 22221 123455668899999777 8888874432111 00 11111 23444444444444
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
++.. .+.++....++...|+.|.+.|.+. ++.+.... ....+-+.++. ++. +.....++..||.
T Consensus 251 ~~~a---~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~g------v~g--E~ll~~L~~~gI~ 319 (386)
T COG1104 251 AEIA---VEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPG------VEG--ESLLLALDLAGIA 319 (386)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCC------CcH--HHHHHhccccCeE
Confidence 4321 2335566677888889999999875 33322221 12233344442 223 3445567788999
Q ss_pred EeCCCCCCCCC-----------------CCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 387 VSPGSSFQCTE-----------------PGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 387 v~pg~~f~~~~-----------------~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
++.||.|.... .+.+|++|+.. ++++++.+++.+++++++.++
T Consensus 320 vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 320 VSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred EeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999996431 35899999886 899999999999999988654
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-18 Score=176.61 Aligned_cols=215 Identities=17% Similarity=0.193 Sum_probs=150.2
Q ss_pred ccCCCCCcH---HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhh
Q 011801 81 IFQDYHGLP---EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSW 154 (477)
Q Consensus 81 ~Y~~~~G~~---~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~ 154 (477)
.|... |.| +|++++|++.+ .+..+++++++.|+..++.+++++||.|+++++.|+.... .++.
T Consensus 40 ~Y~r~-g~p~~~~lE~~la~leg----------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~ 108 (397)
T PRK05939 40 TYARQ-GTPTTAALEAKITKMEG----------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRG 108 (397)
T ss_pred CcCCC-CCHHHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHh
Confidence 35443 445 89999999876 2234455555899999999999999999999999986543 3444
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |++++.++.. |++++++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 109 ~-G~~v~~v~~~-------d~e~l~~~l~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 109 L-GVEVTMVDAT-------DVQNVAAAIRP------NTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred c-CCEEEEECCC-------CHHHHHHhCCC------CCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcc
Confidence 4 9998888752 68889888754 7999999999999999965 9999999999999999999986
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH----------------------HHHHHH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT----------------------VVNCGR 292 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~----------------------i~~~~~ 292 (477)
.... +.+ . ..+..++++|+||.++..|.++|+++..+.. +.....
T Consensus 172 ~~~~----~~~---~------~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
T PRK05939 172 SPWL----FRP---K------DVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRK 238 (397)
T ss_pred cccc----cCc---c------ccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHH
Confidence 3210 000 0 2256689999999999889999998874321 111111
Q ss_pred -Hhccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 293 -KMSSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 293 -~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+..+ ..+++...+++..-++.- ..+.++..++...+.+.|+++
T Consensus 239 ~~~~~~G~~~~p~~a~l~~rgl~tl-------~~R~~~~~~na~~la~~L~~~ 284 (397)
T PRK05939 239 KGLRDMGATLSSEAAHRIAIGAETL-------ALRVDRSCSNALALAQFLEAH 284 (397)
T ss_pred HHHHhcCCCCCHHHHHHHHcCcCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 11122 235666666665555543 223344455667777788765
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-20 Score=181.33 Aligned_cols=169 Identities=19% Similarity=0.259 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
+.++++.+|++++ . .+.+++++|+++++..++.++++|||.|+++.|+|..+...+... |++++.++.+.
T Consensus 61 i~~~~~~~A~~~g--------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~-g~~~~~v~~~~ 130 (294)
T cd00615 61 IKEAQELAARAFG--------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLS-GAVPVYLKPER 130 (294)
T ss_pred HHHHHHHHHHHhC--------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHC-CCEEEEecCcc
Confidence 7889999999986 1 234556999999999999999999999999999999888888776 99988887754
Q ss_pred CCC----cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCC
Q 011801 168 SNN----FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPK 242 (477)
Q Consensus 168 ~~~----f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~ 242 (477)
..+ ..+|++++++++++ +.++++|++++| ||+|.+++ +++|+++|+++|+++|+||+|+.. .|.+..
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~ 202 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPIL 202 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCccc
Confidence 443 36899999999864 347899999999 79999998 888999999999999999999753 233221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEE-EeCC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIV-YSFN 284 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i-~~~~ 284 (477)
..+. . ..+.++++.|++|.+ +|++.|++ ..++
T Consensus 203 ~~~~--~------~~~~div~~S~hK~l--~g~~~~~~l~~~~ 235 (294)
T cd00615 203 PSSA--A------MAGADIVVQSTHKTL--PALTQGSMIHVKG 235 (294)
T ss_pred Ccch--h------hcCCcEEEEchhccc--chHhHHHHHHhCC
Confidence 1111 1 235678999999976 78886554 4433
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=175.77 Aligned_cols=292 Identities=14% Similarity=0.158 Sum_probs=174.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
-+.++++.+|++++ . ++.+++++|. .|+..+...+.++||.|++..-.|......++.. ....+.++
T Consensus 57 ~~~~~e~~la~~~~--------~-~~~l~~~sG~-~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~-~~~~~~~~-- 123 (370)
T PRK05937 57 LLDDLEHKIAHFHG--------A-PEAFIVPSGY-MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVI-SGWHQSFR-- 123 (370)
T ss_pred HHHHHHHHHHHHhC--------C-CeEEEECChH-HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHc-CCceEEec--
Confidence 36899999999987 2 3346666666 5666666666678887777777776666666554 32333332
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
..|+++|++.+++..+...+..+|++++++|++|.+.+ +++|.++|+++|+++|+||+|+...+.. .....
T Consensus 124 -----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~-~g~g~ 194 (370)
T PRK05937 124 -----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGD-DGKGF 194 (370)
T ss_pred -----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCC-CCCch
Confidence 24789999988754322224556778999999999999 7888888999999999999998433322 11111
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
.... + ..+..+++.||||.+|..|. | +++.++..........++ ...++....++.+.++ ++++.-+
T Consensus 195 ~~~~---~-~~~~~~~~~tlsK~~g~~G~--~-vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~---~l~~~~~ 264 (370)
T PRK05937 195 CHSL---G-YENFYAVLVTYSKALGSMGA--A-LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYD---FLSQEGE 264 (370)
T ss_pred HHhh---C-CCCCcEEEEechhhhhcCce--E-EEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHH---HHHhCcH
Confidence 1111 1 11223568899999997773 3 344343322222122221 1234444333333332 1111112
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
..++++++.++++.+.|...+. ..... +.++.. .. .++.+ .+.+.||.+... +.+ ..+++|+
T Consensus 265 ~~~~~l~~l~~~l~~~l~~~~~-----~~~~~--i~~~~~------~~-~~~~~-~L~~~gi~v~~~--~~~-~~~~iRi 326 (370)
T PRK05937 265 LARKQLFRLKEYFAQKFSSAAP-----GCVQP--IFLPGI------SE-QELYS-KLVETGIRVGVV--CFP-TGPFLRV 326 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-----CCEEE--EEeCCh------hH-HHHHH-HHHHCCeeEEee--CCC-CCCEEEE
Confidence 3355667777777777654221 01111 223321 11 13444 455669988632 222 3468999
Q ss_pred EeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 404 CFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 404 ~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
+++.. ++++++.+++.|++++++..
T Consensus 327 s~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 327 NLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99764 99999999999999987643
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=178.39 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=155.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
-...|++.+|++.+ .+..+++++++.|+.+++.+++++||.|+++.++|.+.... +... |+++..
T Consensus 62 tv~~lE~~la~leg----------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~-Gi~v~~ 130 (432)
T PRK06702 62 TLAAFEQKLAELEG----------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKL-GIDVTF 130 (432)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHC-CCEEEE
Confidence 36788999999876 24578899999999999999999999999999999866654 5555 999888
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+.. .+|++++++++++ ++|+|++.+|+||++.+.+ +++|+++|+++|+++|+|++|+. +.
T Consensus 131 vd~------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~t-----P~ 190 (432)
T PRK06702 131 FNP------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLAT-----PY 190 (432)
T ss_pred ECC------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCc-----hh
Confidence 853 3688999998865 8999999999999999999 88899999999999999999852 11
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCc-----ccCCCCceE-----EEEEeCCHHHHH-----------------------
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSK-----DMGLPGFRV-----GIVYSFNDTVVN----------------------- 289 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK-----~~g~~G~Rv-----G~i~~~~~~i~~----------------------- 289 (477)
+... + ..+..++++|+|| ..+++|.++ +|..+++..+..
T Consensus 191 ~~~p---l-----~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (432)
T PRK06702 191 LCQA---F-----EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKA 262 (432)
T ss_pred hCCh---h-----hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHH
Confidence 1111 1 2345588999999 777888887 565543222211
Q ss_pred HHHHhcccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 290 CGRKMSSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 290 ~~~~~~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.......++ .++++..+++...|+.-+ .+.++..++...+.+.|+++
T Consensus 263 ~~~~~~~~g~~~sp~~a~l~~rgL~Tl~-------lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 263 RVQLLRDYGNCMSPFNAYISNIGLETLH-------LRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHHHHccCCCCHHHHHHHHhccCcHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 111222333 467788888888887643 22333356677778888766
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=175.54 Aligned_cols=285 Identities=17% Similarity=0.209 Sum_probs=187.6
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
.....+++++++++++ .+++++++|+++|+..++.++ .++||.|+++.++|..+...+... |++++.+
T Consensus 17 ~~~~~~~~~~la~~~~----------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~ 85 (352)
T cd00616 17 GPKVREFEKAFAEYLG----------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLL-GATPVFV 85 (352)
T ss_pred CHHHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCeEEEE
Confidence 3457899999999986 246888889999999999998 589999999999999988888776 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~ 242 (477)
+++. +++.+|++++++++++ ++++|+++ ||+|...+ +++|.++|+++|+++|+|++++.. .+.+.
T Consensus 86 ~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~~- 151 (352)
T cd00616 86 DIDP-DTYNIDPELIEAAITP------RTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKGR- 151 (352)
T ss_pred ecCC-CcCCcCHHHHHHhcCc------CCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECCE-
Confidence 9864 4688999999988743 78888877 46999887 777888899999999999999721 11111
Q ss_pred cccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEeCCHHHHHHHHHhcccCC-----------------CchH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL-----------------VSSQ 303 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~-----------------vs~~ 303 (477)
. .. . ...+.+.|++ |.++ +.+.|++++.++.+.+.++.....+. .+.+
T Consensus 152 --~----~~----~-~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T cd00616 152 --K----VG----T-FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEI 218 (352)
T ss_pred --E----cc----c-CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHH
Confidence 0 00 0 1124567776 8874 44578888877665554443321110 1112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC-----ceEEEEeeccchhhccCchHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
...+....+ ..+++..++.+++.+++.+.|.++ |+++..+. ....+.+.++.. .... -.++.+
T Consensus 219 ~aa~~~~~l-------~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~v~~ 287 (352)
T cd00616 219 QAAIGLAQL-------EKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE---AGES-RDELIE 287 (352)
T ss_pred HHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc---CCCC-HHHHHH
Confidence 111111111 123445556677778888888885 77665322 123344444420 0001 113555
Q ss_pred HHHHhcCeEEeCCCCCCCC----------------C-------CCEEEEEeccC-CHHHHHHHHHHHH
Q 011801 378 TIVNDVKLNVSPGSSFQCT----------------E-------PGWFRVCFANM-DDDTLQVALNRIA 421 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~~----------------~-------~~~~Rl~~~~~-~~e~l~~~l~~l~ 421 (477)
.| .+.||.+.. .|.+. . .+.+|+++... ++++++.++++|+
T Consensus 288 ~L-~~~gI~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 288 AL-KEAGIETRV--HYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HH-HHCCCCeee--ecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 44 556996642 22111 0 15799999764 9999999988874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=161.53 Aligned_cols=359 Identities=17% Similarity=0.221 Sum_probs=249.6
Q ss_pred CCCCCCCCccccccccccccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 30 PFHPTQNPGGVIQLGLAENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 30 ~~~~~~~~~~~i~l~~~~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
.|+.+.+|.. ++|+.+--.. +-+.+...+++.+... ..+ -.--..|-|--|++.|+++.++.+-.... .
T Consensus 23 ~y~~d~~p~K-vnL~igAYRtd~g~PWvLPvVk~~e~~i--~~d----~s~NHEYLpi~Gl~~F~~~A~el~lg~~s--~ 93 (410)
T KOG1412|consen 23 SYGEDLDPVK-VNLGIGAYRTDDGKPWVLPVVKKAEKKI--AND----QSLNHEYLPILGLPTFTKAATELLLGADS--P 93 (410)
T ss_pred HhcccCCcce-eecccceEEcCCCCeeEehhhhhhhhhc--cCc----hhccchhccccCchhhhhhhHHHhcCCCc--h
Confidence 4777888877 7888764222 3344444444433210 000 01123588888999999999998642211 1
Q ss_pred ccCCCcE--EEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC-cEEEEEeccCCCCcccCHHHHHHHH
Q 011801 108 TFDPDRI--VMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG-VQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 108 ~~~~~~i--~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g-~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
.+..+++ +=+-++|+|+.+....|. -+..+|.+..|+|......++.. | ..+..+++=..++-.+|.+.+...+
T Consensus 94 a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~a-Gf~tv~~Y~yWd~~~k~~d~e~~Lsdl 172 (410)
T KOG1412|consen 94 AIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKA-GFTTVATYPYWDAENKCVDLEGFLSDL 172 (410)
T ss_pred hhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHc-CCceeeeeeeecCCCceecHHHHHHHH
Confidence 1233443 236678999998876652 24567999999999988888876 8 4455555533456678999998888
Q ss_pred HHHHHhCCCeeEE-EEeCC-CCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC--cccHHHhhhhccCCCC
Q 011801 183 ERAQEASINIKGL-IITNP-SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK--FTSVAEVIQEMDCNRD 258 (477)
Q Consensus 183 ~~~~~~~~~~k~v-ii~nP-~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~--~~s~~~~~~~~~~~~~ 258 (477)
+.+ ..+.| ++..+ |||||.-.++|+|+.|++..++++.+.+.|-+|.++.-+++. -+.+..+++ ...
T Consensus 173 ~~A-----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~----~g~ 243 (410)
T KOG1412|consen 173 ESA-----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVE----QGF 243 (410)
T ss_pred hhC-----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHh----cCC
Confidence 875 33334 44433 999999999999999999999999999999999986444332 233333443 334
Q ss_pred cEEEEecCCcccCCCCceEEEE--EeCCHHHHHHH-HH-----hcccCCCchHHHHHHHHhcCChhhHHHHHH---HHHH
Q 011801 259 LIHIIYSLSKDMGLPGFRVGIV--YSFNDTVVNCG-RK-----MSSFGLVSSQTQYLLASMLSDDEFVDNFLV---ETSK 327 (477)
Q Consensus 259 ~viiv~SlSK~~g~~G~RvG~i--~~~~~~i~~~~-~~-----~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~---~~~~ 327 (477)
-++++.||+|.||+.+-|+|-+ +..+..++... .+ ...+...+.....++...|+.+++.++|.+ .+..
T Consensus 244 e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~Mss 323 (410)
T KOG1412|consen 244 ELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSS 323 (410)
T ss_pred eEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999975 45555443322 22 234444566778889999999887665544 4467
Q ss_pred HHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 328 RLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
|+++.|..|.+.|..++ |.....+.|+|-+-.|.+ .-++.+.++++|.+.+- | |+
T Consensus 324 RI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp-----------~qV~~li~~h~vyLl~~--------G--RI 382 (410)
T KOG1412|consen 324 RIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP-----------AQVDHLIENHKVYLLSD--------G--RI 382 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-----------HHHHHHHHhceEEEecC--------C--cE
Confidence 88888899999998874 444556788998876663 24677888999988642 3 89
Q ss_pred EeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 404 CFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 404 ~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+++.++...++...++|.+.++...
T Consensus 383 nisGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 383 NISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred eeeccccccHHHHHHHHHHHHHhhc
Confidence 9988888899999999999887643
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=179.78 Aligned_cols=310 Identities=15% Similarity=0.181 Sum_probs=195.5
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHH--H-HhcCCCC----eEEEcCCCccchHHHHhhhCC
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIM--F-CLANPGD----AFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~--~-~l~~~Gd----~vlv~~P~y~~~~~~~~~~~g 157 (477)
..|..+++.++++++.+..| .+...+..++|+++.+..++ + ++.++|| .|+++.|.|+.+...+... |
T Consensus 108 sqG~lel~~~~~~~la~l~G----~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~-G 182 (481)
T PRK04366 108 VQGALELMYELQEWLKEITG----MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMA-G 182 (481)
T ss_pred hhHHHHHHHHHHHHHHHHhC----CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHc-C
Confidence 45888999999999998877 34445655677666655332 2 3456776 9999999999999888776 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
++++.++++ .+|.+|+++|++++.+ ++++|++++|+ |||.+ .+++++|+++|+++|+++|+|.++....
T Consensus 183 ~~vv~v~~~--~~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~ 251 (481)
T PRK04366 183 FKVVEIPSN--EDGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAI 251 (481)
T ss_pred CEEEEeecC--CCCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhh
Confidence 999999985 3578999999988854 78899999997 99964 3469999999999999999999985221
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC----CceEEEEEeCCHHHHHHHHHh------cccC---------
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP----GFRVGIVYSFNDTVVNCGRKM------SSFG--------- 298 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~----G~RvG~i~~~~~~i~~~~~~~------~~~~--------- 298 (477)
... .+.. ..+..++++|.+|.||.| |..+|++++.++.+. .+.-. ..+.
T Consensus 252 ~g~---~~~~--------~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~-~lp~~~v~~~g~~~~l~~~r~~~i 319 (481)
T PRK04366 252 LGK---ARPG--------DMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAP-FLPVPVVEKDGDRYRLDYDRPKSI 319 (481)
T ss_pred ccc---CCcc--------ccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHh-hCCCCeeeccCCceeecccccccC
Confidence 111 1111 224568889999998754 456888888554332 22100 0000
Q ss_pred ------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce-EEEEeeccchhhccCchH
Q 011801 299 ------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG-LFFWMDLRHLLKEKTLEG 371 (477)
Q Consensus 299 ------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g-~~~~~~l~~~~~~~~~~~ 371 (477)
..+.....++..++..-. .+-+++..++..++.+++.++|.+. +++.-.... .-+.++.+.. ......
T Consensus 320 ~r~~a~t~~~l~~~~a~~~l~~~G--~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~- 394 (481)
T PRK04366 320 GRVRAFYGNFGVLVRAYAYIRSLG--AEGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKL-KETGVR- 394 (481)
T ss_pred CCcccccCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccc-cccCCC-
Confidence 000111111222222111 1224455566666778888888875 322211111 1123333311 111111
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
..++.+.+. +.||.+. +..+.....+.+|+|+... +++++|.+++.|+++.++..+
T Consensus 395 ~~~v~~~L~-~~Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 395 TLDIAKRLL-DYGFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred HHHHHHHHH-HCCccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 124666665 4599864 2222212256899999765 899999999999999876443
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=175.86 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=123.4
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh---CCcEEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR---TGVQIVPV 163 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~---~g~~~~~v 163 (477)
...+|++++|++.+ .+..++++++++|+.+++..++++||.|+++.|.|++....+... .|+++..+
T Consensus 59 t~~~Le~~lA~l~g----------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~ 128 (425)
T PRK06084 59 TNDVLEQRVAALEG----------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFA 128 (425)
T ss_pred hHHHHHHHHHHHhC----------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEE
Confidence 35789999999976 234667788889999999999999999999999998655544321 26666555
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+. .|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|++||+|++|+.... .
T Consensus 129 d~-------~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~--- 188 (425)
T PRK06084 129 AH-------DDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-C--- 188 (425)
T ss_pred CC-------CCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C---
Confidence 42 378999988864 7899999999999999999 78888999999999999999973211 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeC
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSF 283 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~ 283 (477)
.++ ..+..+++.|++|.+|.+|.++|.+++.
T Consensus 189 ~p~---------~~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 189 RPF---------EHGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred Chh---------hcCCCEEEECchhcccccccceeEEEEe
Confidence 111 1234488999999999899999987764
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=174.95 Aligned_cols=208 Identities=16% Similarity=0.127 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v~ 164 (477)
..|++++|++.+ .+++++++|+++|+..++.+++++||.|++++|.|++....+ +.. |+++..++
T Consensus 53 ~~lE~~lA~l~g----------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~-gi~v~~~d 121 (377)
T TIGR01324 53 FALQDAMCELEG----------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYYD 121 (377)
T ss_pred HHHHHHHHHHhC----------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhc-CcEEEEEC
Confidence 599999999976 357999999999999999999999999999999998765432 333 78776664
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.. +.+++++++++ ++|+|++++|+||+|...+ +++|+++|+++|+++|+|++|+...+. .
T Consensus 122 ~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~-~--- 181 (377)
T TIGR01324 122 PL-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF-K--- 181 (377)
T ss_pred CC-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc-C---
Confidence 21 22677777653 7999999999999988866 999999999999999999999743221 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcccCC-CchHHHHHHHHhcCChhhHHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSSFGL-VSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~~~~-vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
+ + ..+..++++|++|.+| .++...|+++++++.+.........++. +++...+.+..-++. +
T Consensus 182 p---l------~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t-------l 245 (377)
T TIGR01324 182 P---L------EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRT-------L 245 (377)
T ss_pred c---c------ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh-------H
Confidence 1 1 2345688999999996 3457789888866544333323334443 455544455444443 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 011801 323 VETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~ 343 (477)
..+.++..++...+.+.|++.
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 246 GVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 333445555656677777765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=176.83 Aligned_cols=171 Identities=22% Similarity=0.300 Sum_probs=134.1
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
...+|++++|++++ .+++++++|+|+|+.+++.++ +++||.|+++.|+|..+...+... |++++.+++
T Consensus 34 ~~~~le~~la~~~g----------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~v~vd~ 102 (379)
T PRK11658 34 KNQALEQAFCQLTG----------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLL-GATPVMVDV 102 (379)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHc-CCEEEEEec
Confidence 47999999999997 246888999999999999998 799999999999999998887776 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-cccCCCCcc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVFSSPKFT 244 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~~~~~~~ 244 (477)
+. ++|.+|++++++++.+ ++|+|+ |+||+|...+ +++|.++|+++|++||+|++++. ..+.+.. .
T Consensus 103 ~~-~~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~-~ 168 (379)
T PRK11658 103 DR-DTLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH-I 168 (379)
T ss_pred CC-CcCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCee-c
Confidence 74 4678999999998864 788876 5677999887 77888999999999999999972 2232211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM 294 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~ 294 (477)
. ..+. .+.||++.-.+++.+.|+++.+++.+.+.++.+
T Consensus 169 ------g----~~g~--~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~ 206 (379)
T PRK11658 169 ------G----ARGT--AIFSFHAIKNITCAEGGLVVTDDDELADRLRSL 206 (379)
T ss_pred ------C----CCCC--EEEeCCCCCcCcccCceEEEECCHHHHHHHHHH
Confidence 1 1122 356776555557778899998777766655544
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-18 Score=173.07 Aligned_cols=215 Identities=18% Similarity=0.199 Sum_probs=142.3
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----Hhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~ 155 (477)
.+|+.+ -...|++++|++.+. ...+++++| +.|+.+++ .+++|||+|++++|.|++.... +...
T Consensus 45 ~r~~~p-~~~~Le~~la~l~g~---------~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~ 112 (380)
T PRK06176 45 SRSGNP-TRFALEELIADLEGG---------VKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKN 112 (380)
T ss_pred cCCCCh-hHHHHHHHHHHHhCC---------CCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhc
Confidence 344433 267899999998761 234555555 66888766 4679999999999999865432 3334
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|+++..++. .|++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 113 -gi~v~~vd~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~ 175 (380)
T PRK06176 113 -GLSCTIIDT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFAT 175 (380)
T ss_pred -CeEEEEcCC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccc
Confidence 888776653 268888888754 7899999999999999998 77888899999999999999985
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhccc-C-CCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSF-G-LVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~-~-~vs~~~q~~~~~~L 312 (477)
..+.. + + ..+..+++.|++|.++-+| .-.|++++.++.+...++.++.. + ..++...+.+..-+
T Consensus 176 ~~~~~-p---~---------~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl 242 (380)
T PRK06176 176 PYYQN-P---L---------LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGI 242 (380)
T ss_pred cccCC-c---c---------ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 43321 1 1 1133478899999997555 45677777666665555443333 2 23555555554444
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
..-. .+.++..+....+.+.|++.
T Consensus 243 ~tl~-------~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 243 KTLG-------LRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred CcHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 3322 22223334445555666554
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=177.03 Aligned_cols=293 Identities=11% Similarity=0.066 Sum_probs=174.3
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC--------c-----EEEEEeccC--CC-----
Q 011801 112 DRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG--------V-----QIVPVHCDI--SN----- 169 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g--------~-----~~~~v~~~~--~~----- 169 (477)
+++++++++++|++.+++.-. ....+|+...-+|++....+...++ . .+..++... .+
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 689999999999999887531 2235688888888876533222111 1 112222210 00
Q ss_pred --CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 170 --NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 170 --~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.+.-+++++++.+... ....++.+|++.--..-+|.+++ .+.+++|.++|++||+++|+||+|.++.+.+. +.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~ 252 (420)
T TIGR00700 175 QLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFAC 252 (420)
T ss_pred chhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHH
Confidence 0011134555554311 12346777766533556787664 45599999999999999999999998766553 2222
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH--HhcccCCCchHHHHHHHHhcC---ChhhHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR--KMSSFGLVSSQTQYLLASMLS---DDEFVDNF 321 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~--~~~~~~~vs~~~q~~~~~~L~---~~~~~~~~ 321 (477)
... +..++ +.+|||.++ +|+|+||++++++ +.+... ...+....++++|.++.+.|+ +.++ .+.
T Consensus 253 ~~~----~~~pD----i~~lsK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-~~~ 321 (420)
T TIGR00700 253 EHE----GPEPD----LITTAKSLA-DGLPLSGVTGRAE-IMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL-IER 321 (420)
T ss_pred hhc----CCCCC----EEEeecccc-CCcceEEEEecHH-HHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-HHH
Confidence 211 11223 346999999 9999999999654 444332 122222367888888755553 3333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh-ccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK-EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~-~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
+.+..++++++.+.+.+.+. .+....+. |+++|+.+..... .........+...+ .+.||.+.|++.|+ ++
T Consensus 322 ~~~~g~~l~~~L~~l~~~~~--~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~p~~~f~----~~ 393 (420)
T TIGR00700 322 ARQIGRLVTDRLTTLKAVDP--RIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAA-HAAGLLLLTCGMFG----NI 393 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCC--CEEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHH-HHCCeEEeccCCCC----CE
Confidence 44444444444333333221 23334444 7888998742100 00111112344444 45699999987773 68
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 401 FRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 401 ~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+|++++. ++++++++++++|.+++.
T Consensus 394 lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 394 IRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 9999976 599999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-19 Score=178.27 Aligned_cols=172 Identities=16% Similarity=0.315 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
.++++++++++.+..| .+++++++|+++|+.+++..+ .++||.|+++.|+|+.+...+... |++++.++++.
T Consensus 30 ~~~~~~~e~~la~~~g------~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~-G~~~v~~d~d~ 102 (375)
T PRK11706 30 GGFTRRCQQWLEQRFG------SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIRP 102 (375)
T ss_pred CHHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHc-CCEEEEEecCC
Confidence 4566666666655433 468999999999999887765 689999999999999999888877 99999999875
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCcccH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKFTSV 246 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~~s~ 246 (477)
++|.+|++++++++.+ ++|+|+++ |++|...+ +++|+++|+++|++||+|++|+... +++.+ +
T Consensus 103 -~~~~~d~~~le~~i~~------~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~---~ 166 (375)
T PRK11706 103 -DTMNIDETLIEAAITP------KTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRA---L 166 (375)
T ss_pred -CcCCcCHHHHHHhcCC------CCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCee---e
Confidence 4588999999998854 78888876 46998877 6788888999999999999998432 22221 1
Q ss_pred HHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEeCCHHHHHHHHHh
Q 011801 247 AEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYSFNDTVVNCGRKM 294 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~~~~~i~~~~~~~ 294 (477)
..+ . .+.+.||+ |.++ +|.+.++++. ++.+.+.++.+
T Consensus 167 g~~--------~-~~~~~Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~~~ 205 (375)
T PRK11706 167 GTI--------G-HIGCFSFHETKNYT-AGEGGALLIN-DPALIERAEII 205 (375)
T ss_pred ecC--------c-CEEEEeCCCCcccc-ccCCeEEEEC-CHHHHHHHHHH
Confidence 111 1 13344554 9997 6877666665 55555544433
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-18 Score=170.97 Aligned_cols=320 Identities=17% Similarity=0.245 Sum_probs=217.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-HhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-LSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-~~~~~g~~ 159 (477)
.|.......+|.++++++++ .+.++.+++++.|+++++.++++|||.| +.++|...... +.+. |..
T Consensus 66 ~yag~~s~~~lE~~va~~~G----------~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~-Gav 132 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG----------FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKN-GAT 132 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhC-CeE
Confidence 48777778999999999997 4579999999999998877788999976 77777444444 5655 886
Q ss_pred EEEEeccC--------CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCC-cccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 160 IVPVHCDI--------SNNFKITREALEAAYERAQEASINIKGLIITNPSNP-LGTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 160 ~~~v~~~~--------~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NP-tG~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
++.++.++ ..++.+|+++|++++++. ...++++|.+.+++|- .|..++.++++++.++|+++|+.||+|
T Consensus 133 ~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~--~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 133 FVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV--GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhccc--cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 66664431 235788999999999742 1125667888999885 589999999999999999999999999
Q ss_pred ccccc--ccc-----CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCHHHHHHHHHh-------c
Q 011801 231 EIYAA--TVF-----SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFNDTVVNCGRKM-------S 295 (477)
Q Consensus 231 e~y~~--~~~-----~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~~i~~~~~~~-------~ 295 (477)
.+... -.| .+-.-.++.+++.+. ..-...++.|..|+.+.| | |+|...++.+.+.++.. .
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~--~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~~ 285 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEM--MSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGMP 285 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHH--hccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCcc
Confidence 98863 111 011224665555443 112224778999999877 4 67776777776666544 1
Q ss_pred ccCCCchHHHHHHHHhcCChhhHH-HHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh---hccCchH
Q 011801 296 SFGLVSSQTQYLLASMLSDDEFVD-NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL---KEKTLEG 371 (477)
Q Consensus 296 ~~~~vs~~~q~~~~~~L~~~~~~~-~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~---~~~~~~~ 371 (477)
+++..+.-...+++..|... ++ .++.. + ....++|.+.|.+.|+++..|.+|.-++++....+ ....+..
T Consensus 286 tyGgla~r~~~ala~gL~e~--~~~~y~~~---r-~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~ 359 (450)
T TIGR02618 286 SYGGLAGRDMEAMAIGIREA--VDYEYIEH---R-VKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPA 359 (450)
T ss_pred ccCchhhhhHHHHHHHHHHh--hhHHHHHH---H-HHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChH
Confidence 23333333333333333321 11 11221 1 12357889999999999988888899999886542 2223333
Q ss_pred HHHHHHHHHHhcCeEEeC-CCCCCCC--------CC--CEEEEEecc--CCHHHHHHHHHHHHHHHhhh
Q 011801 372 EIALWRTIVNDVKLNVSP-GSSFQCT--------EP--GWFRVCFAN--MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~p-g~~f~~~--------~~--~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~ 427 (477)
..+...|..+.||.-.- |+..... .+ ..+|+.+.. .|.++++...++|..+.++.
T Consensus 360 -~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 360 -QSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred -HHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 36777788888997433 3332111 11 479999966 38999999999999999873
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-18 Score=175.58 Aligned_cols=360 Identities=13% Similarity=0.093 Sum_probs=199.1
Q ss_pred CCCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCC
Q 011801 31 FHPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGR 106 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~ 106 (477)
|..+.+.+..||+..+ ...+ ..+.+.+.+++.-+ .........-..+.+..+|+.+.+..+.
T Consensus 47 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~~~~~~~~~~la~~L~~~~p~- 112 (451)
T PRK06918 47 LVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVD-------------QYIHTGFNVMMYEPYIELAEKLAALAPG- 112 (451)
T ss_pred EEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHH-------------hccCccccccccHHHHHHHHHHHHhCCC-
Confidence 3334455667887544 2333 34566666655311 1111110001134455555555443210
Q ss_pred CccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccC--CC
Q 011801 107 VTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDI--SN 169 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~--~~ 169 (477)
-..+.+++++++++|++.+++.-. .....|+....+|++....+...++. .+..+|... ..
T Consensus 113 --~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (451)
T PRK06918 113 --SFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRR 190 (451)
T ss_pred --CCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccc
Confidence 011589999999999999987632 22356888888888765432221121 012222110 00
Q ss_pred CcccCH--------HHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCC-CHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 170 NFKITR--------EALEAAYERAQEASINIKGLIITNPSNPL-GTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 170 ~f~i~~--------~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
...+.. +.+++.++.. ....++.+ +|..|-+.. |.++ +.+.+++|.++|+++|+++|+||+|.++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAa-vi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~ 268 (451)
T PRK06918 191 PEGLTEEQYDDFMIEEFKNFFISE-VAPETIAA-VVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFART 268 (451)
T ss_pred cccCchHHHHHHHHHHHHHHHHhh-cCCCceEE-EEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCcc
Confidence 011111 1233322111 01234555 555675544 6545 5556999999999999999999999987665
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcC---C
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLS---D 314 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~---~ 314 (477)
+.. .+...+ . ..++ +.||||.++ +|+|+||++++++ +.+.+... ..-...++++|.++.+.|+ +
T Consensus 269 g~~-~a~~~~-~---v~pD----i~t~sK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~ 337 (451)
T PRK06918 269 GKY-FAIEHF-D---VVPD----LITVSKSLG-AGVPISGVIGRKE-IMDESAPGELGGTYAGSPLGCAAALAVLDIIEK 337 (451)
T ss_pred Cce-ehhHhc-C---CCCC----EEeeehhhc-CCCccEEEEEcHH-HHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 543 333322 1 1233 448999999 9999999999655 43333221 1122367788888555553 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSS 392 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~ 392 (477)
+++ .+++++..+++.++.+.+.+ +.+ +....+.++++.|....+.. ..........+.+.+ .++||.+.|+..
T Consensus 338 ~~~-~~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~Gvlv~~~~~ 412 (451)
T PRK06918 338 ENL-NDRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEA-NKRGLLLLSAGT 412 (451)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHH-HHCCeEEeecCC
Confidence 333 34455555555554444333 222 23344567676665542110 000111112344444 456999999866
Q ss_pred CCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 393 FQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 393 f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
|+ +++|++++. ++++++++++++|.+++++..
T Consensus 413 ~~----~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~ 445 (451)
T PRK06918 413 YG----NVIRVLMPLVITDEQLEEGLTIIEESLQACY 445 (451)
T ss_pred CC----CEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 63 689999976 699999999999999997643
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=176.01 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=147.8
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRT 156 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~ 156 (477)
.|... |.+ .++++.+++.+..+ .+..++++|+++|+.+++ .++++||.|+++.|.|+++...+ ...
T Consensus 126 ~Y~r~-gnp-t~~aLE~~lA~leg------~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~- 195 (464)
T PLN02509 126 DYTRS-GNP-TRDALESLLAKLDK------ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRS- 195 (464)
T ss_pred ccCCC-CCH-HHHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHC-
Confidence 46555 544 57777777766543 566777788889987666 57899999999999999876433 334
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|+++..++. .|++++++++.+ ++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+..
T Consensus 196 G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i~D---l~~I~~lAk~~g~~lIVD~A~a~~ 259 (464)
T PLN02509 196 GVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKIAEMAHAQGALVLVDNSIMSP 259 (464)
T ss_pred CeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCHHH---HHHHHHHHHHcCCEEEEECCcccc
Confidence 888887753 257888887743 7899999999999999755 999999999999999999998643
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcC
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLS 313 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~ 313 (477)
.+. . ++ ..+..++++|++|.++-+| .=.|++++.++.+...++.++.. ...++...+++..-|+
T Consensus 260 ~~~-~---pl---------~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~ 326 (464)
T PLN02509 260 VLS-R---PL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK 326 (464)
T ss_pred ccC-C---hh---------hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhh
Confidence 221 1 11 1134588899999987433 34677877665544433322221 1234444444433333
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
. +..+.++..+..+.+.+.|+++
T Consensus 327 t-------L~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 327 T-------MALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred h-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 2 3445556667778888888775
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=174.19 Aligned_cols=285 Identities=20% Similarity=0.271 Sum_probs=194.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchH---HHHhhhCCcEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFD---RDLSWRTGVQI 160 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~ 160 (477)
+.+.|+.++++++ .++ ++|++++|+|.+++.++..+ .++||.|++..-.|++.. ..+..+.|+++
T Consensus 45 ~~~~r~~la~~lg--------~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v 116 (371)
T PF00266_consen 45 LEEAREALAKLLG--------APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEV 116 (371)
T ss_dssp HHHHHHHHHHHHT--------SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHhcC--------Cccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 4688888999987 456 79999999999999999999 799999999999988765 22222339999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
..++.+.. -.+|++++++++.+ ++++|+++..+|-||...+ +++|.++|+++|+++++|.+++ +..
T Consensus 117 ~~i~~~~~--~~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~---~g~ 182 (371)
T PF00266_consen 117 RVIPADPG--GSLDLEDLEEALNP------DTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQS---AGC 182 (371)
T ss_dssp EEEEEGTT--SSCSHHHHHHHHHT------TESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTT---TTT
T ss_pred cccccccc--chhhhhhhhhhhcc------ccceEEeecccccccEEee---eceehhhhhccCCceeEechhc---ccc
Confidence 88888653 36789999999964 8999999999999999999 8889999999999999999997 332
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cc--------------------c--
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SS--------------------F-- 297 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~--------------------~-- 297 (477)
-+ ..+. ..+..+++.|..|.+|.+| +|+++.+++.+... +.. .. +
T Consensus 183 ~~-id~~--------~~~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (371)
T PF00266_consen 183 VP-IDLD--------ELGADFLVFSSHKLGGPPG--LGFLYVRPEAIERL-RPAKPGGGYLDFPSLQEYGLADDARRFEG 250 (371)
T ss_dssp SS---TT--------TTTESEEEEESTSTTSSST--EEEEEEEHHHHHHH-HTSSSSSSTTTHHHHHHHCHHSTTTGSSS
T ss_pred cc-cccc--------ccccceeeecccccCCCCc--hhhheehhhhhhcc-ccccccccccccccchhcccccccccccc
Confidence 22 2211 2345578899999555444 89999977654443 211 11 1
Q ss_pred CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEec----CCceEEEEeeccchhhccCchHH
Q 011801 298 GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLK----SNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~----~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
++.+.....++...++.-. +.-+++..++..+..+++.+.|.+.+ +.+.. ...+..+.+.++.. +.
T Consensus 251 GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~------ 321 (371)
T PF00266_consen 251 GTPNVPAIYALNEALKLLE--EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-DA------ 321 (371)
T ss_dssp SS--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-SH------
T ss_pred cceeeehhhhHHHHHhhhh--ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-CH------
Confidence 1233333333333333211 23355667777888888899998874 44432 22233445555432 11
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHH
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVA 416 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~ 416 (477)
.++.+.+.+ .||.++.|..+.. ...+.+||+++.. +++|++++
T Consensus 322 ~~~~~~L~~-~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 322 DDVVKYLEE-RGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHHHHHH-HTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHHHHHHhh-cCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 134455544 4999999876640 1237999999876 88999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=170.50 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=174.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CC-CCeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA-------NP-GDAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-------~~-Gd~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~ 170 (477)
.+.+++++++++|++.+++... ++ .+.|+..+-+|++.....-..++.. +..++.
T Consensus 92 ~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 166 (397)
T TIGR03246 92 ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY----- 166 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----
Confidence 3689999999999999998751 12 3568888877877643322221321 112221
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
.|++++++++.+ ++++|++..++++.|... +.+.+++|.++|++||+++|+||+|.++...+..+ .....
T Consensus 167 --~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~ 237 (397)
T TIGR03246 167 --NDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHY 237 (397)
T ss_pred --CCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhhhc
Confidence 168888888753 677777774444555443 88999999999999999999999998754444322 11111
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
+..++ +.++||.+| .|+|+|+++++++ +.+.+... ..|+ .+++++.++.+.|+..+ ..+..
T Consensus 238 ----gv~pD----i~t~~K~lg-gG~pigav~~~~~-i~~~~~~~~~~~t~~-~~p~~~aaa~a~l~~~~-----~~~l~ 301 (397)
T TIGR03246 238 ----GVTPD----ILTSAKALG-GGFPIGAMLTTTE-IAAHLKVGTHGTTYG-GNPLACAVAGKVLDLVN-----TPELL 301 (397)
T ss_pred ----CCCCC----EEEeehhhh-CCcceeEEEEcHH-HHHhccCCCcCCCCC-CCHHHHHHHHHHHHHHh-----hccHH
Confidence 11223 338999998 8999999999554 54444322 1232 56677777766665321 12345
Q ss_pred HHHHHHHHHHHHHHhhCC-----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 327 KRLAKRHHNFTKGLEQVG-----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~g-----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
++++++.+++.+.|++++ +.... ..|.++.+.+..... .....++..+++ +||.+.+. +++++
T Consensus 302 ~~~~~~~~~l~~~L~~l~~~~~~~~~vr-g~G~~~~i~~~~~~~----~~~~~~~~~l~~-~Gv~~~~~------g~~~l 369 (397)
T TIGR03246 302 AGVKQRHDLFVDGLEKINARYNVFSEIR-GKGLLIGAVLTEAYQ----GKAKQFVNAAAE-EGVIALIA------GPNVV 369 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEeee-cCceEEEEEEcCchh----hHHHHHHHHHHH-CCeEEeec------CCCEE
Confidence 566777777877777653 12222 234555555542110 122356666665 59998763 24689
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|++.+. ++++++++++++|.+++.+
T Consensus 370 R~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 370 RFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 997655 4999999999999998864
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-19 Score=168.91 Aligned_cols=289 Identities=18% Similarity=0.294 Sum_probs=182.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC------CCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP------GDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~------Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
.++|.+.|.+.++.+.+ ...+.-.|++++|+|+.++.++.+|..+ --.|+...|+|+.|....... .....
T Consensus 45 s~eL~~~Ir~LH~~VGN--Avt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f-~s~~y 121 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGN--AVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF-DSRLY 121 (363)
T ss_dssp -HHHHHHHHHHHHHH-S--B--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--BTTE
T ss_pred cHHHHHHHHHHHHHhcc--ccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc-cccCc
Confidence 58999999999987655 3356668999999999999999998432 147999999999998776544 33333
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGL-IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v-ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
...-|. ..|. +.+ + .-..| ++|+||||.|.+ .+.++ +.-+..+|.|-+|. -
T Consensus 122 ~w~Gda-~~~~-~~~------------~-~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYY-----W 173 (363)
T PF04864_consen 122 KWAGDA-SNFK-NSD------------N-PSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYY-----W 173 (363)
T ss_dssp EEEEEC-CCGT-T-S--------------CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT------S
T ss_pred cccccH-Hhhc-cCC------------C-CCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeee-----c
Confidence 344332 2332 110 1 22344 999999999998 55555 36677889999996 3
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC----
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD---- 314 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~---- 314 (477)
|.+.++..-. +..+.+.|+||.-|.+|-|+||.+..++.+.+.+.+.. +-..+|.-+|.-++.+|..
T Consensus 174 PhyTpI~~~a-------D~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~ 246 (363)
T PF04864_consen 174 PHYTPITAPA-------DHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDG 246 (363)
T ss_dssp TTTS---S-B---------SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCC-------CCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhc
Confidence 5555555432 44577889999999999999999998888877665442 2233788888776666642
Q ss_pred hhh---HHHHHHHHHHHHHHHHHHHHHHHhhCCC-eE--ec-----------CCceEEEEeeccchhhccCchHHHHHHH
Q 011801 315 DEF---VDNFLVETSKRLAKRHHNFTKGLEQVGI-NC--LK-----------SNAGLFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 315 ~~~---~~~~~~~~~~~l~~r~~~l~~~L~~~gi-~~--~~-----------~~~g~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
.+. ...+..-.++.+++|.+.|.+.+.+-+. .. .. ....-|.|+++..... +=|.
T Consensus 247 ~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed--------~DC~ 318 (363)
T PF04864_consen 247 YGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREED--------EDCY 318 (363)
T ss_dssp CCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGG--------SSHH
T ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCccc--------ccHH
Confidence 100 0024566678889999999999876531 11 11 1123499999985311 1256
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 378 TIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
..++++||..+.|..|+. ++.++|||.-. ++++++.+++||..++
T Consensus 319 ~~l~~~~I~tr~G~~fga-~~ryVRlSml~-~~d~Fd~l~~rL~~lv 363 (363)
T PF04864_consen 319 AVLREAKIITRSGVLFGA-DSRYVRLSMLK-RDDDFDQLLERLSKLV 363 (363)
T ss_dssp HHHHCTTEEEEEGGGGTS--TTEEEEESSS--HHHHHHHHHHHHCCH
T ss_pred HHHHhCCcccCCCCccCC-CCCeEEEeccC-CHHHHHHHHHHHHhhC
Confidence 778899999999999986 57899999864 8999999999998653
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-17 Score=167.36 Aligned_cols=289 Identities=10% Similarity=0.115 Sum_probs=175.3
Q ss_pred CcEEEeCChHHHHHHHHHHhc-CCC-CeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCCCCcccC--
Q 011801 112 DRIVMGGGATGANELIMFCLA-NPG-DAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDISNNFKIT-- 174 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~-~~G-d~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~f~i~-- 174 (477)
+++++++++++|++.+++... -.| .+|+....+|++........+|. .++.++..... -.++
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~ 180 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQ 180 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHH
Confidence 589999999999999887642 123 57888888888764322111121 11222221111 0122
Q ss_pred --HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhh
Q 011801 175 --REALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251 (477)
Q Consensus 175 --~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~ 251 (477)
++++++.+++. ....++++|++.--++|+|..+ +.+.+++|.++|+++|+++|+||+|.++.+.+.. .+.... .
T Consensus 181 ~~~~~l~~~~~~~-~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~-~ 257 (421)
T PRK09792 181 DSLDAIERLFKSD-IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHY-A 257 (421)
T ss_pred HHHHHHHHHHHhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhc-C
Confidence 35666655431 0123688877765589999765 8999999999999999999999999987665543 232222 1
Q ss_pred hccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--h-cccCCCchHHHHHHHHh---cCChhhHHHHHHHH
Q 011801 252 EMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--M-SSFGLVSSQTQYLLASM---LSDDEFVDNFLVET 325 (477)
Q Consensus 252 ~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~-~~~~~vs~~~q~~~~~~---L~~~~~~~~~~~~~ 325 (477)
..+| +.+|||.+| +|+|+||++++++ +.+.+.. . .++ ..+++++.++.+. ++++++ +++.
T Consensus 258 ---~~pD----i~t~gK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~l~~~~~----~~~~ 323 (421)
T PRK09792 258 ---DKPD----LMTMAKSLA-GGMPLSGVVGNAN-IMDAPAPGGLGGTY-AGNPLAVAAAHAVLNIIDKESL----CERA 323 (421)
T ss_pred ---CCCc----EEEeehhhc-CCCceEEEEEcHH-HHhccCCCCcCCCC-CCCHHHHHHHHHHHHHHHhhhH----HHHH
Confidence 1334 469999998 9999999999554 4433221 1 233 3677778754444 444333 2222
Q ss_pred HHHHHHHHHHHHHHHh-hCCCeEecCCc-eEEEEeeccchhh-ccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 326 SKRLAKRHHNFTKGLE-QVGINCLKSNA-GLFFWMDLRHLLK-EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~-~~gi~~~~~~~-g~~~~~~l~~~~~-~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
+ .+.++.+...+.|. +.+. +....+ |+++|+.++.... .........++..+++ +||.+.+... .++.+|
T Consensus 324 ~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g~----~~~~ir 396 (421)
T PRK09792 324 N-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCGA----YGNVIR 396 (421)
T ss_pred H-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecCC----CCCEEE
Confidence 2 33333333333332 2343 223334 8999999974211 0000112345666665 5999964221 246899
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
++++. ++++++++++++|.+++.
T Consensus 397 l~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 397 FLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHh
Confidence 99887 599999999999999874
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=168.96 Aligned_cols=302 Identities=14% Similarity=0.098 Sum_probs=186.9
Q ss_pred CcHHHHH----HHHHHHhcccCCCCccCCCcE-EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch-HHHHhhh-CCcE
Q 011801 87 GLPEFRQ----AVAKFMGKGRGGRVTFDPDRI-VMGGGATGANELIMFCLANPGDAFLVPSPYYAAF-DRDLSWR-TGVQ 159 (477)
Q Consensus 87 G~~~lr~----aia~~~~~~~g~~~~~~~~~i-~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~-~~~~~~~-~g~~ 159 (477)
...+|.+ .+|++++ .+.. +.+++++.|+..++.++++|||.|+++...|.+. ...++.. .+..
T Consensus 71 ~~~~lE~~~~~~la~l~g----------~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~ 140 (416)
T PRK13034 71 FVDEVEALAIERAKQLFG----------CDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKW 140 (416)
T ss_pred HHHHHHHHHHHHHHHHhC----------CCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccce
Confidence 3567777 7888776 2345 4567889999999999999999999999998762 2222210 0222
Q ss_pred E--EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 160 I--VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 160 ~--~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
. ..++.+. .++.+|++++++.+++. ++|+|+++.+. +|...+ +.+|.++|+++|+++|+|++++..+
T Consensus 141 ~~~~~~~~~~-~~~~~d~~~le~~l~~~-----~~klVi~~~~~--~g~~~d---l~~l~~la~~~g~~livD~Aha~G~ 209 (416)
T PRK13034 141 YNAVQYGVDR-LTGLIDYDEVEELAKEH-----KPKLIIAGFSA--YPRELD---FARFREIADEVGALLMVDMAHIAGL 209 (416)
T ss_pred eeeEEccccc-ccCCcCHHHHHHHHhhc-----CCeEEEECCCc--cccccC---HHHHHHHHHHcCCEEEEeCcccccC
Confidence 2 2343332 24568999999987642 57888776654 466666 7777888999999999999987433
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC--CchHHHHHHHHhcCCh
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--VSSQTQYLLASMLSDD 315 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~--vs~~~q~~~~~~L~~~ 315 (477)
+....... . .....++++|++|.++.+ .-|++++.++.+...++.....+. .+.+... ++..+.-.
T Consensus 210 ~~~g~~~~--~-------~~~~Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-aa~~~al~ 277 (416)
T PRK13034 210 VAAGEHPN--P-------FPHAHVVTTTTHKTLRGP--RGGMILTNDEEIAKKINSAVFPGLQGGPLMHVI-AAKAVAFG 277 (416)
T ss_pred cccCCCCC--C-------CCCceEEEEeCcccCCCC--CCeEEEECcHHHHHHHHhhcCCcccCCccHHHH-HHHHHHHH
Confidence 32211110 0 113457889999999323 248888877766655554322221 1111111 11111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC-
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF- 393 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f- 393 (477)
+.++....+.++++.++.++|.+.|.+.|+++..+ .....+++.+...... ...+...+++.||.+.+-...
T Consensus 278 ~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~------~~~~~~~L~~~GI~v~~~~~p~ 351 (416)
T PRK13034 278 EALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLS------GKDAEQALERAGITVNKNTVPG 351 (416)
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCC------HHHHHHHHHhCCcEEeccCCCC
Confidence 11111123456788899999999999899987642 2335666666532111 123445567779998752111
Q ss_pred ---CCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHhhh
Q 011801 394 ---QCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 394 ---~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+..+..+|+++.. +++++++++++.|++++.+.
T Consensus 352 ~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 352 DTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred CCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 11124579999754 36899999999999998753
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=173.55 Aligned_cols=296 Identities=15% Similarity=0.173 Sum_probs=179.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--------C-CC-eEEEcCCCccchHHHHhhhCC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--------P-GD-AFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--------~-Gd-~vlv~~P~y~~~~~~~~~~~g 157 (477)
..+|.+.++++++ .+.+++++++++|++.++..... + +. .|+...-+|.+.....-..++
T Consensus 119 ~~~la~~L~~~~~----------~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~ 188 (474)
T PLN02624 119 FPEFAEYLTSMFG----------YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSC 188 (474)
T ss_pred HHHHHHHHHhhcC----------CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCC
Confidence 3556666666542 35899999999999999865321 1 33 577777777765322211111
Q ss_pred cE------------EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcC
Q 011801 158 VQ------------IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDT-LKSLVSFINDKN 224 (477)
Q Consensus 158 ~~------------~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~-l~~l~~~~~~~~ 224 (477)
-. +..++. -|++.+++.++. ...++++|++..++|++|.+++.++ +++|.++|++||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g 258 (474)
T PLN02624 189 DNEATRGFGPLLPGHLKVDF-------GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN 258 (474)
T ss_pred CccccccCCCCCCCceEeCC-------CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 11 111221 167888888863 2347889999999999999988775 999999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCc
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVS 301 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs 301 (477)
+++|+||+|.++...+..+ .. +.. +..++ +.+|||.+|.+++++|+++++++ +...+... ..+ ..+
T Consensus 259 illI~DEv~tG~GrtG~~~-a~-~~~---~i~pD----iv~lsK~lggG~~pigav~~~~~-i~~~~~~~~~~~T~-~g~ 327 (474)
T PLN02624 259 VLMIADEIQTGLARTGKML-AC-DWE---EVRPD----VVILGKALGGGVIPVSAVLADKD-VMLCIKPGEHGSTF-GGN 327 (474)
T ss_pred CEEEEeccccCcCcCcchh-hH-Hhc---CCCCC----EEEecccccCCCCcceeeeecHH-HHhHhccCCcCCCC-CCC
Confidence 9999999998754444321 11 111 11222 23578999966699999999654 43333322 122 256
Q ss_pred hHHHHHHHHhcCCh---hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHH
Q 011801 302 SQTQYLLASMLSDD---EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 302 ~~~q~~~~~~L~~~---~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
++.+.++.+.|+-. ++ .+...+..++++++.+.+.+.+.. .+....+. |.+..+.+..... ......++++.
T Consensus 328 pl~~aaa~aaLe~l~~~~l-~~~~~~~~~~l~~~L~~l~~~~~~-~i~~vrg~-G~~~~i~l~~~~~--~~~~a~~~~~~ 402 (474)
T PLN02624 328 PLASAVAMAALQVVQDEKL-AERSAKLGQELRDQLQKIQKQFPK-LIKEVRGR-GLLNAVVLNSPKL--GPVSAYDVCLK 402 (474)
T ss_pred HHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCC-ceEEEEee-EEEEEEEecCCCc--ChHHHHHHHHH
Confidence 77777777776421 11 122233333333333332222221 12223333 4555555542110 01122356666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+ .+.||.+.|+. ++++||++.. ++++++++++++|++++.+
T Consensus 403 L-~e~GV~v~p~~------~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 403 L-KERGLLAKPTH------DTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred H-HhCCeEEecCC------CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 5 45799998862 5789999743 4999999999999999865
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-18 Score=161.29 Aligned_cols=330 Identities=14% Similarity=0.117 Sum_probs=208.7
Q ss_pred cccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCCh
Q 011801 41 IQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120 (477)
Q Consensus 41 i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~ 120 (477)
++|..+.-.-+.+.+.+.+.+.+. .....|++.+-...+.+.+++.++ ...++++.++
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~------------~~~~~YG~D~~~~~~e~~~ae~~g----------~~a~~Fv~sG 59 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA------------VGDDVYGEDPTTNALEQRIAELFG----------KEAALFVPSG 59 (342)
T ss_pred CccccCccCCCCHHHHHHHHhccc------------cCCCCCCCCHHHHHHHHHHHHHhC----------CceEEEecCc
Confidence 455555444455666666665431 133457665545555555555554 3789999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCccchHHH--HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe
Q 011801 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRD--LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198 (477)
Q Consensus 121 t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~ 198 (477)
|+|+.+.+...++||+.|++..-.+-...+. ++...++. +++..+..+.++++++++.+++...-+...+..+++.
T Consensus 60 T~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~--~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e 137 (342)
T COG2008 60 TQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQ--KLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLE 137 (342)
T ss_pred cHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCc--eeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEe
Confidence 9999999999999999999998877544332 33332333 3344444567899999999998622133455566666
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc--cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA--TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 199 nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~--~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
|++|-.|+++|.++|++|.++|+++|+.|.+|.+.-. .+..+ .+..++.. ....+..++||..+.|+
T Consensus 138 ~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~------~~D~v~~~~tK~g~~~~-- 206 (342)
T COG2008 138 NTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKS------YVDSVSFCLTKGGGAPV-- 206 (342)
T ss_pred eccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHh------hCCEEEEecccCCccee--
Confidence 6667889999999999999999999999999998632 22223 33333322 22245558899887664
Q ss_pred EEEEEeCCHHHHHHHHHhc-ccCC-Cc--hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC
Q 011801 277 VGIVYSFNDTVVNCGRKMS-SFGL-VS--SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN 351 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~-~~~~-vs--~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~ 351 (477)
|.|+..+..+++.++.++ ..+. .+ .+.......+|++.-|. ....+-.+..+.|.+.|... |+++..+.
T Consensus 207 -gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~-----~~~~Han~mA~~La~~~~~~~G~~~~~~~ 280 (342)
T COG2008 207 -GAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWR-----LAADHANAMAARLAEGLEAKPGVKLAFPV 280 (342)
T ss_pred -eeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHHHhhhhcCCceeccCC
Confidence 888877776665544321 1221 22 23333444555554331 11111122256678888844 99887765
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
-.+.++++++...- .. ......+...|+.+.+++ .-+|++.+.. +++++++++..++.++
T Consensus 281 ~tN~vf~~l~~~~i-----~~-l~~~~~~~~~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 281 ETNMVFVRLPESAI-----EA-LRLAGALFYRGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cccEEEEECChHHH-----HH-HHhhchhheeeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 55789999995211 11 112223344466655432 3589998875 8999999999999875
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-17 Score=163.47 Aligned_cols=321 Identities=15% Similarity=0.206 Sum_probs=217.1
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-HhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-LSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-~~~~~g~~ 159 (477)
.|.......+|.++++++++ .+.++.++.+|.|+++++.+.++|||.| +..+|...... +.+. |..
T Consensus 73 ~Yagd~s~~~LE~~vAe~lG----------~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~-Ga~ 139 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYYG----------FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELN-GGI 139 (460)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhC-CcE
Confidence 58877788999999999997 3569999999999999877778999964 44434333333 5555 776
Q ss_pred EEEEecc--------CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 160 IVPVHCD--------ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 160 ~~~v~~~--------~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
.+.+.++ ...++.+|+++|++++++. ...++++|.+.+++|.. |...|.+++++|.++|+++|+.||+|
T Consensus 140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~--~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhccc--cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 5555322 1246789999999999742 12356677888889988 79999999999999999999999999
Q ss_pred cccccc--ccC-----CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-------c
Q 011801 231 EIYAAT--VFS-----SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-------S 296 (477)
Q Consensus 231 e~y~~~--~~~-----~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-------~ 296 (477)
.+.... +|- +-.-.++.+++.+.. .-...++.|++|.++.+- -|+|+..++.+.+.++.+. +
T Consensus 218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~--s~aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~t 293 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMF--SYADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVYEGMPS 293 (460)
T ss_pred CcchhcChhhhcccccccCCCcHhHHhhhcc--CcCcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHhccccCCCcC
Confidence 998621 111 111135555444331 122356678999998652 3899998888877776542 2
Q ss_pred cCCCchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh---hccCchHH
Q 011801 297 FGLVSSQTQYLLASMLSD-DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL---KEKTLEGE 372 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L~~-~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~---~~~~~~~e 372 (477)
++..+.--..+++.-|.+ .+ ..++..+ + ...++|.+.|.+.|+++..|.+|--++++....+ ....+..
T Consensus 294 ygg~~grd~~alAvgl~E~~~--~~y~~~r---i-~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~- 366 (460)
T PRK13237 294 YGGMAGRDMEAMAIGIEESVQ--YEYIEHR---V-GQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPA- 366 (460)
T ss_pred CCChhhhHHHHHHhHHHhhch--HHHHHHH---H-HHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChH-
Confidence 333333233333333332 21 2334332 2 2347889999999999999999988899876532 2233333
Q ss_pred HHHHHHHHHhcCeEEeC-CCCCCCC-----C---C--CEEEEEecc--CCHHHHHHHHHHHHHHHhhh
Q 011801 373 IALWRTIVNDVKLNVSP-GSSFQCT-----E---P--GWFRVCFAN--MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~p-g~~f~~~-----~---~--~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~ 427 (477)
..|...|..+.||.-.- |+..... + + ..+|+.+.. .|.++++...++|..+.++.
T Consensus 367 ~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 367 QALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred HHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence 36777788888987432 3321111 1 1 479999965 38999999999999999873
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=162.25 Aligned_cols=351 Identities=18% Similarity=0.261 Sum_probs=243.0
Q ss_pred CCCCCCCcccccccccccc------ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccC
Q 011801 31 FHPTQNPGGVIQLGLAENQ------LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRG 104 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~n~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g 104 (477)
|..+.||.+ |+||.+... +-.+-+.++-++... .+..--|-+..|+++|.+..+++.-..-.
T Consensus 46 fk~D~n~~K-iNLgvGaYRdd~gKp~vL~~VrkAE~ql~~-----------~~ldKEYlpI~Gl~eF~k~sakLa~G~~s 113 (427)
T KOG1411|consen 46 FKKDPNPKK-INLGVGAYRDDNGKPYVLPSVRKAEQQLAS-----------LSLDKEYLPITGLAEFNKLSAKLALGDNS 113 (427)
T ss_pred HhcCCCcce-eeecccceecCCCCeeeeHHHHHHHHHHhh-----------hcccchhccccchHHHHHHHHHHhhcCCc
Confidence 445778877 899886422 223444444332111 11223688999999999999998642111
Q ss_pred CCCccCCCcEEE--eCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHH
Q 011801 105 GRVTFDPDRIVM--GGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180 (477)
Q Consensus 105 ~~~~~~~~~i~~--t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~ 180 (477)
. .+..++|+. |-++|+|+.+....| .-++..|.+|+|+|.......... |+.+..+.......-++|.+.+.+
T Consensus 114 ~--~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~a-g~~~~~yrYyd~~t~gld~~g~le 190 (427)
T KOG1411|consen 114 P--VIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDA-GLPVKFYRYYDPKTRGLDFKGMLE 190 (427)
T ss_pred h--hhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccccc-CcceeeeeeccccccccchHHHHH
Confidence 0 123445655 456888888777665 357899999999999988888776 998877776544566788888877
Q ss_pred HHHHHHHhCCCeeEEEE--eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC--CCcccHHHhhhhccCC
Q 011801 181 AYERAQEASINIKGLII--TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSVAEVIQEMDCN 256 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii--~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~--~~~~s~~~~~~~~~~~ 256 (477)
.+.++.. ..+++ .+.|||||.--+.|++++|.++.++++.+-+.|-+|.++.-++ ..-.++.-+++ .
T Consensus 191 dl~~~p~-----gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~----~ 261 (427)
T KOG1411|consen 191 DLGEAPE-----GSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE----D 261 (427)
T ss_pred HHhcCCC-----CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH----c
Confidence 7766422 22333 3559999999999999999999999999999999999853222 11123333333 4
Q ss_pred CCcEEEEecCCcccCCCCceEEEE--EeCCHHH----HHHHHHh-ccc-CCCchHHHHHHHHhcCChhhHHHHHHH---H
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIV--YSFNDTV----VNCGRKM-SSF-GLVSSQTQYLLASMLSDDEFVDNFLVE---T 325 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i--~~~~~~i----~~~~~~~-~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~---~ 325 (477)
...+++..|++|.||+.|-|+|.+ ++.+... ...++.. ++. ...+.-...+++.+|+|.++-.+|+.+ +
T Consensus 262 g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~M 341 (427)
T KOG1411|consen 262 GHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGM 341 (427)
T ss_pred CCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHH
Confidence 467888999999999999999985 5544332 2222222 222 223334667788999998765666555 4
Q ss_pred HHHHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 326 SKRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
.+|+...|+.|.+.|+..| +.....+-|+|++-.+.+ +....+.+++.|.+. .+|
T Consensus 342 adRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-----------eQv~~l~ke~~iYmT--------~dG-- 400 (427)
T KOG1411|consen 342 ADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-----------EQVDWLTKEYHIYLT--------KDG-- 400 (427)
T ss_pred HHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-----------HHHHHHHhhheeeec--------cCc--
Confidence 6788888999999998875 333456778999877763 356778888888874 233
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
||+++.++...+..+.++|.++.+.
T Consensus 401 RiS~aG~ss~nV~yLa~aih~vtk~ 425 (427)
T KOG1411|consen 401 RISMAGLSSSNVPYLADAIHAVTKN 425 (427)
T ss_pred eEeeccccccCCcccchhhHhHhcC
Confidence 9999998888888888888877643
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=166.30 Aligned_cols=211 Identities=13% Similarity=0.083 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v~ 164 (477)
.+.++++++.+....+ .++.++ ++++++|+..++.+++++||.|+++.|.|+++... ++.. |+++..++
T Consensus 63 nPt~~~Le~~la~le~-----~~~~v~-~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~-Gi~v~~vd 135 (395)
T PRK05967 63 TPTTDALCKAIDALEG-----SAGTIL-VPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRL-GVEVEYYD 135 (395)
T ss_pred ChHHHHHHHHHHHHhC-----CCCEEE-ECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhc-CeEEEEeC
Confidence 4444445544443222 234454 45578999999999999999999999999987643 3444 88888775
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+ +.+++++++++ ++|+|++++|+||++.+. ++++|+++|+++|+++|+|++|+..++-.
T Consensus 136 ~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v~---dl~~I~~la~~~g~~vvVD~t~a~p~~~~---- 195 (395)
T PRK05967 136 PE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEMQ---DIPAIAEAAHRHGAIVMMDNTWATPLYFR---- 195 (395)
T ss_pred CC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHH---HHHHHHHHHHHhCCEEEEECCccCceecC----
Confidence 32 24667777754 789999999999976554 59999999999999999999997432221
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHH-Hhccc-CCCchHHHHHHHHhcCChhhHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGR-KMSSF-GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~-~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
+ . ..+..+++.|++|.++ ..+.-.|+++.+++ ..+.+. .+... ..+++...+.+..-|+.-
T Consensus 196 p-l--------~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl------ 259 (395)
T PRK05967 196 P-L--------DFGVDISIHAATKYPSGHSDILLGTVSANEK-CWPQLLEAHGTLGLCAGPDDTYQILRGLRTM------ 259 (395)
T ss_pred h-h--------HcCCCEEEEecccccCCCCCeeEEEEEcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHcCcccH------
Confidence 1 1 2245588999999964 33477887766443 322222 22222 235666666666655553
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.-+.++..++...+.+.|+++
T Consensus 260 -~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 260 -GIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHhC
Confidence 233344556666677778765
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=169.01 Aligned_cols=291 Identities=17% Similarity=0.153 Sum_probs=185.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---------CC-CCeEEEcCCCccch-HHHHhhhC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---------NP-GDAFLVPSPYYAAF-DRDLSWRT 156 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---------~~-Gd~vlv~~P~y~~~-~~~~~~~~ 156 (477)
..++.+.++++++ .+.+++++++++|++.++..+. .+ .+.|+...-+|.+. ...+...
T Consensus 81 ~~~l~~~l~~~~~----------~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~- 149 (401)
T TIGR01885 81 FGEFAEYVTKLFG----------YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMS- 149 (401)
T ss_pred HHHHHHHHHhhcC----------CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCc-
Confidence 3566666666653 3589999999999999998742 12 36777788888763 3333321
Q ss_pred Cc------------EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhc
Q 011801 157 GV------------QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDK 223 (477)
Q Consensus 157 g~------------~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~ 223 (477)
|- .++.++. .|+++|++++++. +.++.+|++..+.+++|.+.+.+ .+++|.++|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~ 219 (401)
T TIGR01885 150 TDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH 219 (401)
T ss_pred CCcccccccCCCCCCceEeCC-------CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 21 1222221 1688899888643 34677888877799999988644 699999999999
Q ss_pred CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-hc-ccCCCc
Q 011801 224 NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-MS-SFGLVS 301 (477)
Q Consensus 224 ~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-~~-~~~~vs 301 (477)
|+++|+||+|.++.+.+.. .+. +.. +..++ + + ++||.++..|+|+|+++++++ +.+.++. .. .....+
T Consensus 220 ~~lli~DEv~~g~g~~G~~-~~~-~~~---~~~~d-i-~--~~gK~l~~g~~~ig~v~~~~~-i~~~~~~~~~~~t~~~~ 289 (401)
T TIGR01885 220 NVLLIADEIQTGLGRTGKL-LCV-DHE---NVKPD-I-V--LLGKALSGGVYPVSAVLADDD-VMLTIKPGEHGSTYGGN 289 (401)
T ss_pred CCEEEEechhhCCCccchh-hHH-hhc---CCCCC-E-E--EeeccccCCCCCcEEEEEcHH-HHhhccCCCCCCCCCCC
Confidence 9999999999875444432 121 111 11222 2 2 568999866699999999654 4444432 11 112246
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE---ecCCceEEEEeeccchhhccCchHHHHHHHH
Q 011801 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC---LKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~---~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
++++.++.+.|+..+ +. ...+++++..+++.+.|++++..+ ..+. |.+..+.++.... . ....+++..
T Consensus 290 p~~~~aa~a~L~~i~--~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~-g~~~~i~~~~~~~--~-~~~~~l~~~ 360 (401)
T TIGR01885 290 PLACAVAVAALEVLE--EE---KLAENAEKLGEIFRDQLKKLPKPIITEVRGR-GLLNAIVIDESKT--G-RTAWDLCLK 360 (401)
T ss_pred HHHHHHHHHHHHHHH--hc---cHHHHHHHHHHHHHHHHHhccCCceeEEeec-CeeEEEEeccCcc--h-hHHHHHHHH
Confidence 778887777775321 11 223455566778888888774332 2333 4454444442110 0 112356666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+. ++||.+.|+. ++.+|++... ++++++++++++|+++++
T Consensus 361 l~-~~Gv~v~~~~------~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 361 LK-EKGLLAKPTH------GNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred HH-hCCEEEEecC------CCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 65 5699998752 5689999854 499999999999998763
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-17 Score=165.74 Aligned_cols=357 Identities=15% Similarity=0.098 Sum_probs=199.4
Q ss_pred CCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 32 HPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 32 ~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
..+.+.+..||+..+ .+.+ +.+.+.+.+.+.-+ .+..+.......+.+..+|+.+.+..+
T Consensus 35 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~-------------~~~~~~~~~~~~~~~~~la~~L~~~~p--- 98 (443)
T PRK08360 35 VWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTD-------------KLIHYTPIYGFPVEPLLLAEKLIEIAP--- 98 (443)
T ss_pred EEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHH-------------hccCccccccCcHHHHHHHHHHHHhCC---
Confidence 334455667887544 4444 34666666655311 111121111123455566666554322
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCC--CCc
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDIS--NNF 171 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~--~~f 171 (477)
..-+++++++++++|++.+++.-. .....|+...-.|++....+...+|. .+..++.... ..|
T Consensus 99 -~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (443)
T PRK08360 99 -GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPF 177 (443)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccc
Confidence 122689999999999999987631 22356787777787754221111121 1222222110 011
Q ss_pred c--------cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 172 K--------ITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 172 ~--------i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
. -+.+.+++.+++. ..+.++++|++.--.||+|.+++ .+.+++|.++|+++|+++|+||+|.++.+.+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~ 256 (443)
T PRK08360 178 GKEPGSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKW 256 (443)
T ss_pred cCchhhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccc
Confidence 1 1133344544321 11347888777633599999887 557999999999999999999999986555542
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.+.... . ..++ + -+|||.+| +|+|+||++++++ +.+.+.... .....+++.+.++.+.|+.-+- +
T Consensus 257 -~a~~~~-~---~~pD-i---itlsK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~- 323 (443)
T PRK08360 257 -FAIEHF-G---VEPD-I---ITLGKPLG-GGLPISATIGRAE-IMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-K- 323 (443)
T ss_pred -hhhhhc-C---CCCC-E---EEeccccc-CCceeEEEEEcHH-HHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-c-
Confidence 221111 1 1233 2 27799999 9999999999654 444443221 1122566777777777653210 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhh--ccCchHHHHHHHHHHHhcCeEEeCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLK--EKTLEGEIALWRTIVNDVKLNVSPGSSFQ 394 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~--~~~~~~e~~l~~~ll~~~gI~v~pg~~f~ 394 (477)
...+++++.-+++.+.|++ .++......-|+++-+++..... .........++..++ ++||.+.+..
T Consensus 324 ---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~--- 396 (443)
T PRK08360 324 ---NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFFS--- 396 (443)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeecC---
Confidence 1122333333444444433 23221223356777777642111 111111124555555 5699986531
Q ss_pred CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 395 CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 395 ~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
...+|++.+. +++++++++++++.+++...+.
T Consensus 397 ---~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 397 ---GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3579997765 4999999999999999976544
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-17 Score=166.79 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=132.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
.+..+|++++|++++. ++.++++|+++|+.+++.++ .++||.|+++.|+|..+...+... |++++.++
T Consensus 29 ~~~~~le~~la~~~g~----------~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~~~~~ 97 (380)
T TIGR03588 29 PTVPAFEEALAEYVGA----------KYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYC-GAKVDFVD 97 (380)
T ss_pred hhHHHHHHHHHHHHCC----------CeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCEEEEEe
Confidence 4578999999999972 34566778899999999998 789999999999999988877776 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCCc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPKF 243 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~~ 243 (477)
++. +++.+|++++++++++. ...++++|+++ |++|...+ +++|.++|+++|++||+|++++.. .+++...
T Consensus 98 ~~~-~~~~~d~~~l~~~i~~~--~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~ 168 (380)
T TIGR03588 98 IDP-DTGNIDEDALEKKLAAA--KGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPV 168 (380)
T ss_pred cCC-CcCCcCHHHHHHHhhcc--cCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeC
Confidence 865 35789999999998631 01278888765 56898877 788889999999999999999842 2332211
Q ss_pred ccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEeCCHHHHHHHHHh
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYSFNDTVVNCGRKM 294 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~~~~~i~~~~~~~ 294 (477)
.+ . ....+.+.|++ |.++.+ ..|+++..++.+.+.++.+
T Consensus 169 g~----~------~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~ 209 (380)
T TIGR03588 169 GN----C------RYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLL 209 (380)
T ss_pred CC----c------cccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHH
Confidence 10 0 01135667776 888633 5788888777776655443
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-17 Score=165.52 Aligned_cols=340 Identities=15% Similarity=0.097 Sum_probs=201.8
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ .+.+ +.+.+.+++++.-+ .+..+... -..+....+++.+.+..+
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~-~~~~~~~~la~~L~~~~~----- 96 (408)
T PRK04612 36 DDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAG-------------KLWHTSNV-FYSAPPLKLAEELVTASR----- 96 (408)
T ss_pred ECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHH-------------hccccccc-cCCHHHHHHHHHHHhhCC-----
Confidence 3445667888544 3334 34666666665321 11111111 112344556666554321
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C--CC-CeEEEcCCCccchHHHHhhhCCcEEEE---EeccCC---CCcccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N--PG-DAFLVPSPYYAAFDRDLSWRTGVQIVP---VHCDIS---NNFKIT 174 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~--~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~---v~~~~~---~~f~i~ 174 (477)
..+++++++++++|++.+++... + ++ .+|+....+|++....+...+|..... -+.... -.|. |
T Consensus 97 ~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-d 175 (408)
T PRK04612 97 FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN-D 175 (408)
T ss_pred CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC-C
Confidence 12689999999999999986632 1 12 368888888887654332221211100 000000 0111 6
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC--HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 175 REALEAAYERAQEASINIKGLIITNPSNPLGTTLD--RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~--~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
.++++++++. +..+.++..|.+++|-+++ .+.+++|.++|+++|+++|+||+|.++...+..+ . ..
T Consensus 176 ~~~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-a--~~--- 243 (408)
T PRK04612 176 VEALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF-A--HW--- 243 (408)
T ss_pred HHHHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh-h--hh---
Confidence 7888877742 3345677789888887665 6689999999999999999999999765544321 1 11
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA 330 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~ 330 (477)
..+.+..+.||||.+| +|+|+|+++++++ +.+.+... ...+..+++++.++.+.|+.-+ + .+..++++
T Consensus 244 ---~~~~~pdi~t~~K~l~-~G~piga~~~~~~-~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~--~---~~l~~~~~ 313 (408)
T PRK04612 244 ---QEQVTPDIVTLAKALG-GGFPIGAMLAGPK-VAETMQFGAHGTTFGGNPLAAAVARVALRKLA--S---PQIAANVA 313 (408)
T ss_pred ---hcCCCCCEEEEcchhc-CCCceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHH--h---ccHHHHHH
Confidence 2244556779999999 9999999998654 44443321 1122367788888887775321 1 12233444
Q ss_pred HHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec
Q 011801 331 KRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406 (477)
Q Consensus 331 ~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~ 406 (477)
++-+++.+.|+++ ++......-|+++.+.+..... ....++.+. +.++||.+.|. +++.+|++..
T Consensus 314 ~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~----~~a~~i~~~-l~~~Gvlv~~~------g~~~lRl~Pp 382 (408)
T PRK04612 314 RQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHA----GQAGAILDL-AAEHGLLLLQA------GPDVLRFVPA 382 (408)
T ss_pred HHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchh----hHHHHHHHH-HHHCCeEEeeC------CCCEEEEcCC
Confidence 4445555555443 3221223346777777752100 111234444 44669999763 2467999986
Q ss_pred c-CCHHHHHHHHHHHHHHHhh
Q 011801 407 N-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 407 ~-~~~e~l~~~l~~l~~~~~~ 426 (477)
. ++++++++++++|++.+.+
T Consensus 383 l~it~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 383 LNLTDAELADGLARLRLALAD 403 (408)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 5 4999999999999999875
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=167.56 Aligned_cols=275 Identities=11% Similarity=0.093 Sum_probs=175.4
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCC---CeEEEcCCCccchHH----HHhhhCCcEE----EEEeccCCCCcccCHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPG---DAFLVPSPYYAAFDR----DLSWRTGVQI----VPVHCDISNNFKITREA 177 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~G---d~vlv~~P~y~~~~~----~~~~~~g~~~----~~v~~~~~~~f~i~~~~ 177 (477)
.++++|++|+|+|+++++++..+.++| +.|++....|+.... .++.. |+++ +.++.+ .++.+++++
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~g~~~~~~ 160 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLTVEESMVQIEPR--EEETLRLED 160 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhc-CCCcccceEEeccC--CCCccCHHH
Confidence 578999999999999999998876664 368888888987322 23334 8776 445443 345678999
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR 257 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~ 257 (477)
++++++.. +.++++|++++++|.||.+++ +++|.++|+++|+++++|++++. +.-+ ..+. ..
T Consensus 161 l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~---G~~~-id~~--------~~ 222 (406)
T TIGR01814 161 ILDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV---GNVP-LDLH--------DW 222 (406)
T ss_pred HHHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc---CCcc-cccc--------cC
Confidence 99887642 347899999999999999999 88899999999999999999983 3222 2221 22
Q ss_pred CcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcc------------------------cCCCchHHHHHHHHhc
Q 011801 258 DLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSS------------------------FGLVSSQTQYLLASML 312 (477)
Q Consensus 258 ~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~------------------------~~~vs~~~q~~~~~~L 312 (477)
+..+++.|.+|.++ -|| |.++..++........... .++.+...-.++...|
T Consensus 223 gvD~~~~s~hK~l~g~pG---~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al 299 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGPG---AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSL 299 (406)
T ss_pred CCCEEEEcCccccCCCCC---eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHH
Confidence 45588899999873 345 4344333332221100000 1223333333333333
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCeEecCCc----eEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-----GINCLKSNA----GLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-----gi~~~~~~~----g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
+--. +.-+++.+++.++..+++.+.|++. |+++..+.. +..+.+.++ .+. .++.+.+ .++
T Consensus 300 ~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~~------~~~~~~L-~~~ 368 (406)
T TIGR01814 300 DIFD--QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VPG------KAVFQAL-IKR 368 (406)
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CCH------HHHHHHH-HHC
Confidence 2110 1113455666777777788877664 366654421 223445554 111 1355555 456
Q ss_pred CeEEeCCCCCCCCCCCEEEEEe-ccC-CHHHHHHHHHHHHHHH
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCF-ANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~ 424 (477)
||.+... .++.+|+|+ +.. ++++++.+++.|++++
T Consensus 369 gi~v~~~------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 369 GVIGDKR------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred CEEEecc------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 9987532 246899999 444 9999999999998875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=161.38 Aligned_cols=291 Identities=12% Similarity=0.094 Sum_probs=177.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcE-------------EEEEeccCCC-C--cc
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQ-------------IVPVHCDISN-N--FK 172 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~-------------~~~v~~~~~~-~--f~ 172 (477)
.+++++++++++|++.+++.-. ....+|+...-+|++....+...+|.. +..++..... + ..
T Consensus 101 ~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 180 (421)
T PRK06777 101 PAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVE 180 (421)
T ss_pred CceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHH
Confidence 3689999999999999887531 223568888888888754332221210 1111211100 0 01
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~ 251 (477)
-+++.+++.+++. ....++.+|++.--.+..|. +.+.+.+++|.++|+++|+++|+||+|.++.+.+.. .+....
T Consensus 181 ~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~-~~~~~~-- 256 (421)
T PRK06777 181 EALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKL-FAMEYY-- 256 (421)
T ss_pred HHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCch-hhhhhc--
Confidence 1245566655421 01235777666544677885 678999999999999999999999999986565532 222211
Q ss_pred hccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 011801 252 EMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328 (477)
Q Consensus 252 ~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~ 328 (477)
+..+| + -++||.+| +|+|+||+++++ .+.+.+... ..+ ..+++++.++.+.|+..+ + .+..++
T Consensus 257 --~~~pD--i--v~~sK~l~-~G~pigav~~~~-~i~~~~~~~~~~~T~-~~~p~~~aaa~a~L~~~~---~--~~l~~~ 322 (421)
T PRK06777 257 --DVKPD--L--ITMAKSLG-GGMPISAVVGRA-EVMDAPAPGGLGGTY-AGNPLAVAAALAVLDVIA---E--EKLCQR 322 (421)
T ss_pred --CCCCC--E--Eeeehhhc-CCCceEEEEEcH-HHHhccCCCCCCCCC-CcCHHHHHHHHHHHHHHH---h--ccHHHH
Confidence 11233 2 27999999 999999999964 454443321 223 367888888888885321 1 233445
Q ss_pred HHHHHHHHHHHHhhC----C-CeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 329 LAKRHHNFTKGLEQV----G-INCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 329 l~~r~~~l~~~L~~~----g-i~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
++++.+++.++|+++ + +....+.+.+| .+.+.... .....+-...+...++ +.||.+.|+..|+ +++|
T Consensus 323 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~i~~~~~~g----~~lr 396 (421)
T PRK06777 323 ALILGAHLVEVLEKAKASCPAIVDIRARGSMV-AVEFNDPQTGKPSPEFTRQYQRQAL-EEGLLLLSCGVHG----NVIR 396 (421)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEecCceEEE-EEEEecCccCCccHHHHHHHHHHHH-hCCeEEeecCCCC----CEEE
Confidence 556666666666553 2 33345566555 44443210 0001111123344444 4699999987663 5899
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+++.. ++++++++++++|.+++.
T Consensus 397 ~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 397 FLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99974 499999999999999874
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-16 Score=161.79 Aligned_cols=356 Identities=11% Similarity=0.054 Sum_probs=198.6
Q ss_pred CCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc
Q 011801 33 PTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 33 ~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
.+.+.+..||+..+ ...+ +.+.+.+.+++.-+ .+..+.......+....+|+.+.+..+.
T Consensus 35 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~l~~~~p~--- 98 (425)
T PRK07495 35 WDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLD-------------RFTHTCHQVVPYENYVRLAERLNALVPG--- 98 (425)
T ss_pred EeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHh-------------hccCcccCccCCHHHHHHHHHHHHhCCC---
Confidence 34456678887544 2334 34666666665311 1111111011123444455555432210
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCCCCccc
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDISNNFKI 173 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~~f~i 173 (477)
-..+++++++++++|++.+++.-. ....+|+...-+|++........+|. .++.+|.+... ..+
T Consensus 99 ~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 177 (425)
T PRK07495 99 DFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGV 177 (425)
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccc
Confidence 012589999999999999887531 22357888888888764322111110 12233332111 112
Q ss_pred C----HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 174 T----REALEAAYERAQEASINIKGLIITNP-SNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 174 ~----~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+ .+++++.+++. ..+.++.+|++.-- +| +| ...+.+.+++|.++|+++|+++|+||+|.++...+..+ ...
T Consensus 178 ~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-a~~ 254 (425)
T PRK07495 178 SVEQSLAALDKLFKAD-VDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AME 254 (425)
T ss_pred cHHHHHHHHHHHHHhc-cCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-eec
Confidence 2 33344444321 11236777665422 45 78 45799999999999999999999999998764444321 111
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHh---cCChhhHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASM---LSDDEFVDNFL 322 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~---L~~~~~~~~~~ 322 (477)
..+.+..+.+|||.+| +|+|+|+++++++ +.+.+.. ..+.+..+++++.++.+. +.++++ .+++
T Consensus 255 --------~~gv~pDi~tlsK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l-~~~~ 323 (425)
T PRK07495 255 --------HHEVAADLTTMAKGLA-GGFPLAAVTGRAE-IMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL-CERA 323 (425)
T ss_pred --------ccCCCCCEEeehhhhc-CCccceEEEEcHH-HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-HHHH
Confidence 1123334679999998 9999999999654 4433322 112223677777754444 444443 3444
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh-ccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK-EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~-~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
++..++++++.+.+.+.+. .+.-. ..-|+++|+++..... .........++..++ +.||.+.+... ..+.+
T Consensus 324 ~~~g~~l~~~L~~l~~~~~--~i~~v-rG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g~----~~~~~ 395 (425)
T PRK07495 324 NQLGNRLKQRLASLRETVP--EIADI-RGPGFMNAVEFNDADSGLPSAEFANRVRLKAL-EKGLILLTCGV----HGNVI 395 (425)
T ss_pred HHHHHHHHHHHHHHHhhCC--Ceeee-ecCceEEEEEEecCCCCCccHHHHHHHHHHHH-HCCeEEeecCC----CCCEE
Confidence 4455555555444433321 12111 2337999999853211 001011123455555 56999875321 13679
Q ss_pred EEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 402 RVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 402 Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
|+..... +++++++++++|.+++++.
T Consensus 396 r~~Ppl~it~~~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 396 RFLAPITIQDDVFAEALDILEASILEA 422 (425)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 9998764 9999999999999999764
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=163.40 Aligned_cols=310 Identities=16% Similarity=0.151 Sum_probs=193.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChH-HHHHHHHHHhcC---CCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGAT-GANELIMFCLAN---PGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t-~al~~i~~~l~~---~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
...+.+.+.+.+.+..| ++ -...++++|+| .++.+++.++-. +||.|+++.-+|......+.+. |++++.
T Consensus 103 ~~~l~~~~e~~~~~~~G----~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~-G~~pv~ 177 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLG----LRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTA-GFEPRV 177 (444)
T ss_pred HHHHHHHHHHHHHHHcC----CCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHc-CCeEEE
Confidence 44455555555544444 22 13588888888 588887777642 5899999999999898888887 999999
Q ss_pred Eec-cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 163 VHC-DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 163 v~~-~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
+++ ...++|.+|+++|++++++. +.+..++++++|+ |+.....+++++|.++|++||+++|+|++|+. ..+
T Consensus 178 Vd~~~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~---~~~ 249 (444)
T TIGR03531 178 IETVLDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGL---QSN 249 (444)
T ss_pred eeeeecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcC---cCh
Confidence 985 23467999999999999742 2245566777665 55555667799999999999999999999983 111
Q ss_pred CcccHHHhhhhccCCCC-cEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHH
Q 011801 242 KFTSVAEVIQEMDCNRD-LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~-~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
. ....... +...+ ..+++.|++|.+.+||. .|.+++.++.+.+.+++.......+++.|.+...++.-+ .+
T Consensus 250 ~---~~~~~~~-g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~~ 321 (444)
T TIGR03531 250 K---YMELINK-AIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---SK 321 (444)
T ss_pred h---hhhhhhc-cccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---HH
Confidence 1 1111110 00112 25668899999988776 455557677776666654333334557787777777543 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC----CCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe---E-EeCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV----GINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL---N-VSPGS 391 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI---~-v~pg~ 391 (477)
.+++..++..++++++.+.|.++ |..++... ...-+-+.+.... ... -.++ -.+|...+| . |.||.
T Consensus 322 g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~~~---~~~~-g~~l~~~~v~g~r~v~~~~ 396 (444)
T TIGR03531 322 GYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-GKD---PTML-GSMLYSRRVTGPRVVTNGD 396 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-ccC---HHHH-HHHHHhCCCCCceeecCCC
Confidence 45666677777778887777654 66666432 2233334444321 111 1123 333433354 2 45665
Q ss_pred -------C---CCCCCC----CEEEEEec-cCCHHHHHHHHHHHHHH
Q 011801 392 -------S---FQCTEP----GWFRVCFA-NMDDDTLQVALNRIAAF 423 (477)
Q Consensus 392 -------~---f~~~~~----~~~Rl~~~-~~~~e~l~~~l~~l~~~ 423 (477)
. |+...+ .++=+..+ .++.++++.++++|.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 397 SKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred ceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 2 221111 13323221 15889999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-17 Score=167.34 Aligned_cols=347 Identities=13% Similarity=0.083 Sum_probs=199.1
Q ss_pred CCCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+. +.+ +.+.+.+.+.+.-+. ....|....+..+|.+.+++.+.
T Consensus 46 d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~------------~~~~~~~~~~~~~la~~L~~~~~--------- 104 (426)
T PRK00062 46 DVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK------------GLSFGAPTELEVELAELVIELVP--------- 104 (426)
T ss_pred eCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh------------CCcCCCCCHHHHHHHHHHHHhCC---------
Confidence 34456788987653 322 456666666553210 01122233344555555555431
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcE----------EEEEeccCCCCcc---cC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQ----------IVPVHCDISNNFK---IT 174 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~----------~~~v~~~~~~~f~---i~ 174 (477)
..+++++++++++|++.+++.... .++.|+..+++|+++...+....|.. ..+.+.. .+.+. -|
T Consensus 105 ~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d 183 (426)
T PRK00062 105 SIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFA-KHTLTAPYND 183 (426)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccc-cceEEcCCCC
Confidence 246899999999999999987432 35789999999999763322111110 0000000 00000 26
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 175 REALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
++++++.+++. ..++.+|++..-..-+|.+.+ .+.+++|.++|++||+++|+||+|.++.. +..+ . .+...
T Consensus 184 ~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~~-~-~~~~~-- 255 (426)
T PRK00062 184 LEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALGG-A-QGYYG-- 255 (426)
T ss_pred HHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCcc-H-HHHhC--
Confidence 88888887642 236777666522333787775 88899999999999999999999987633 2221 1 12111
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH---hccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK---MSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~---~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~ 328 (477)
..+| +.+|||.+| .|+++|++++++ .+.+.+.. ...+ ...+++.+.++.+.|+-.+- ++..++.++.
T Consensus 256 -~~pD----i~~~gK~l~-~G~p~ga~~~~~-~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~ 327 (426)
T PRK00062 256 -VTPD----LTTLGKIIG-GGLPVGAFGGRR-EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEAL 327 (426)
T ss_pred -CCcc----hHhhhhHhh-CCCcceeeeEHH-HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHH
Confidence 1233 358999999 999999998854 45554431 1111 23567777777666652211 1223333333
Q ss_pred HHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh-h------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 329 LAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL-K------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 329 l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~-~------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
....++.|.+.+++.++.......|.++-+.+.... . .........++..++ ++||.+.|.. ++.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~------~~~~ 400 (426)
T PRK00062 328 TKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ------FEAG 400 (426)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC------cCce
Confidence 334444455544555654433234455555554210 0 000011124555555 5699998742 2346
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++++. ++++++++++++|++++++
T Consensus 401 ~~~~~-~t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 401 FVSAA-HTDEDIEKTLEAARKAFAA 424 (426)
T ss_pred eeecc-CCHHHHHHHHHHHHHHHHh
Confidence 77643 5999999999999999865
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-16 Score=162.10 Aligned_cols=155 Identities=21% Similarity=0.292 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v 163 (477)
..+|++.+|++.+ .+..++++++++|+.+++.++++|||.|+++.+.|.+.... +... |++++.+
T Consensus 65 ~~~le~~lA~l~g----------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (427)
T PRK05994 65 NAVLEERVAALEG----------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSF-GWQVRWA 133 (427)
T ss_pred HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 5788999999876 23477888889999999999999999999999999865432 4444 8988888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+ |++++++++.+ ++|+|++++|+||+|.+++ +++|.++|+++|+++|+|++++.. +...
T Consensus 134 d~~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~-~~~~-- 194 (427)
T PRK05994 134 DAD-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASP-YLIR-- 194 (427)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccc-ccCC--
Confidence 742 67888888753 7899999999999999998 788899999999999999999732 1111
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS 282 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~ 282 (477)
++ ..+..+++.|++|.+|-+|-.+|.+++
T Consensus 195 -pl---------~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 195 -PI---------EHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred -cc---------ccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 11 123447889999999866766776554
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=165.68 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=184.4
Q ss_pred HHHHHHHHHhcccCCCCccCCCcEEEe---CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh-------C--Cc
Q 011801 91 FRQAVAKFMGKGRGGRVTFDPDRIVMG---GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR-------T--GV 158 (477)
Q Consensus 91 lr~aia~~~~~~~g~~~~~~~~~i~~t---~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~-------~--g~ 158 (477)
.|+.++++++ .+++++.++ +|+++|+.+++.+|+++||.|++....+++........ . +.
T Consensus 85 ar~~~a~lf~--------a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~ 156 (452)
T PTZ00094 85 CQKRALEAFG--------LDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYF 156 (452)
T ss_pred HHHHHHHHhC--------CCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeee
Confidence 3456667765 456777666 78999999999999999999999877776654322110 0 13
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
++.+++++. +..+|+++|++++++. +++.|++. ++.+|...+ +++|.++|+++|+++++|++++....
T Consensus 157 ~~~~~~~~~--~g~id~~~L~~~l~~~-----~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i 224 (452)
T PTZ00094 157 ESLPYQVNE--KGLIDYDKLEELAKAF-----RPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLV 224 (452)
T ss_pred eeeecccCC--CCCcCHHHHHHHHHHh-----CCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhccc
Confidence 344555553 3578999999998753 56666654 335999999 77777888999999999999974333
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-----cc-CCCchHHHHHHHHhc
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-----SF-GLVSSQTQYLLASML 312 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-----~~-~~vs~~~q~~~~~~L 312 (477)
....+ + . + ..+..+++.|++|+++ |.+.|++++.++.......+.. .+ ++.+.....++...+
T Consensus 225 ~~~~~-~---~-~----~~~~D~l~~S~hK~l~--GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al 293 (452)
T PTZ00094 225 AAGVL-P---S-P----FPYADVVTTTTHKSLR--GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQL 293 (452)
T ss_pred cCCCC-C---C-C----CCCCcEEEcCCccCCC--CCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHH
Confidence 22110 0 0 0 1134478899999872 3335888875543221111111 11 112222223333333
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc-eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe-CC
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA-GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS-PG 390 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~-g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~-pg 390 (477)
..- .....++.++++.+..+++.+.|.+.|+++..+.. ....++.+... .... +.+..++++.||.+. +|
T Consensus 294 ~~~--~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~----~~~~--~~~~~~L~~~gI~vs~~~ 365 (452)
T PTZ00094 294 KEV--QSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPF----GITG--SKMEKLLDAVNISVNKNT 365 (452)
T ss_pred HHH--hChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcC----CCCH--HHHHHHHHHCCcEEeccc
Confidence 211 01223556678888889999999888887764221 12344444321 1111 244556677899994 44
Q ss_pred CCCCC--CCCCEEEEEeccCC-----HHHHHHHHHHHHHHHhhh
Q 011801 391 SSFQC--TEPGWFRVCFANMD-----DDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 391 ~~f~~--~~~~~~Rl~~~~~~-----~e~l~~~l~~l~~~~~~~ 427 (477)
..+.. ..++++|+++..++ +++++.+++.|+++++..
T Consensus 366 ~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 366 IPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred CCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 44331 23579999996553 899999999999998753
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-16 Score=152.62 Aligned_cols=284 Identities=17% Similarity=0.226 Sum_probs=207.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+-+++++++|.+++.++..++.|||+||+..-...+ +.+.++.+ |.+++.+.+.. +-.++++++++++++ +
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~-g~~v~~~~~~w--g~~v~p~~v~~~L~~----~ 129 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERY-GAEVVVLEVEW--GEAVDPEEVEEALDK----D 129 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHh-CCceEEEeCCC--CCCCCHHHHHHHHhc----C
Confidence 456677889999999999999999999998876433 44566666 99999998764 346899999999984 5
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
+++++|.+++.-.+||...+ +++|.++|++|+.++|+|.+-+ +++.++. ++ .++..+++.+--|.
T Consensus 130 ~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~~-----vd----~wgiDv~itgSQK~ 194 (383)
T COG0075 130 PDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPLK-----VD----EWGIDVAITGSQKA 194 (383)
T ss_pred CCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCcccc-----hh----hcCccEEEecCchh
Confidence 68899999998899999998 8899999999999999999988 6665532 12 34566788888999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHH---------------h----cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRK---------------M----SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA 330 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~---------------~----~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~ 330 (477)
++.| -.+|++..+++.+...... + ....+.+...-+++...|+.-. ++-++...+|.+
T Consensus 195 l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~--~EGle~r~~RH~ 271 (383)
T COG0075 195 LGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLIL--EEGLEARIARHR 271 (383)
T ss_pred ccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence 9853 2478888876655443321 1 1112233344455555555422 333677888999
Q ss_pred HHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-c
Q 011801 331 KRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-A 406 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~ 406 (477)
+..+.+.++++++|++.+... ......+.+|...+. + +....+++++|+.+.+|- +......|||+. +
T Consensus 272 ~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~-----~-~~~~~~~~~~g~~i~gg~--~~l~gkifRIGhMG 343 (383)
T COG0075 272 RLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDD-----K-KVRRALLKEYGVEIAGGQ--GPLKGKIFRIGHMG 343 (383)
T ss_pred HHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCc-----H-HHHHHHHHhCCEEecccc--cccCccEEEEecCc
Confidence 999999999999999877622 212344556654332 1 233478888899998773 444567899987 5
Q ss_pred cCCHHHHHHHHHHHHHHHhhhh
Q 011801 407 NMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 407 ~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+.+++..++.+|..++.+..
T Consensus 344 ~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 344 NVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred cCCHHHHHHHHHHHHHHHHHcC
Confidence 4699999999999999998754
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-16 Score=159.29 Aligned_cols=351 Identities=11% Similarity=0.058 Sum_probs=211.5
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
..|.|--.||..++...+. +...-. ....+|.. ....|+......++.....+...+.+| .+..+|-.-+
T Consensus 50 ~~l~LiasEN~~s~~v~~a-~~s~l~--nkyaeg~p---g~ryy~g~~~~d~ie~l~~~ra~~lf~----a~~anvqp~S 119 (493)
T PRK13580 50 SSLKLIASENYSSLAVQLA-MGNLLT--DKYAEGTP---GHRFYAGCQNVDTVEWEAAEHAKELFG----AEHAYVQPHS 119 (493)
T ss_pred cCceEecccccCCHHHHHH-hccccc--ccCcCCCC---CccccCCCchHHHHHHHHHHHHHHHhC----CCcccccCCC
Confidence 3477777788776543222 211000 00112211 112344455566777666667766665 3445666666
Q ss_pred ChHHHHHHHHHHhcCC-------------------------------CCeEEEcCCCccchHHH---Hhhh-CCcEEEEE
Q 011801 119 GATGANELIMFCLANP-------------------------------GDAFLVPSPYYAAFDRD---LSWR-TGVQIVPV 163 (477)
Q Consensus 119 G~t~al~~i~~~l~~~-------------------------------Gd~vlv~~P~y~~~~~~---~~~~-~g~~~~~v 163 (477)
| +.|+..++.+|++| ||+|+..++..++.... .... ...+..++
T Consensus 120 g-~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y 198 (493)
T PRK13580 120 G-ADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSY 198 (493)
T ss_pred c-HHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEec
Confidence 6 55888888999876 89999988777554221 0111 02456666
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. .+..+|.+++++.+++ +++.|+++..+|-. ...+ +++|.++|+++|+++++|++++..++....+
T Consensus 199 ~vd~-~~g~iD~d~l~~~~~~------~~plvii~g~S~~~-~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~ 267 (493)
T PRK13580 199 GVDP-DTGLLDYDEIAALARE------FKPLILVAGYSAYP-RRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267 (493)
T ss_pred ccCc-ccCccCHHHHHHHHhh------cCCEEEEeCccccC-CCcC---HHHHHHHHHHcCCEEEEECchhhceeccccc
Confidence 6664 3457999999999876 56677888877774 4667 8888888999999999999998554542221
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
.. .... ..+..++++|++|++ .|-+.|+|+++++ +.+.+.+..++...++....+++..+.-.+..+...+
T Consensus 268 ~~--~~~~----~~~~D~vtgT~hKaL--~GP~GG~I~~~~~-l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~ 338 (493)
T PRK13580 268 TG--DEDP----VPHADIVTTTTHKTL--RGPRGGLVLAKKE-YADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQ 338 (493)
T ss_pred hh--hcCC----CCCCcEEEeCChhhc--cCCCeEEEEecHH-HHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHH
Confidence 10 0000 123457899999988 3444699998654 4444443333321111111211111111111111124
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCC---C
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTE---P 398 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~---~ 398 (477)
+.++++.++.+.|.+.|.+.|+++... ..+-.+++++..... ....+...|.+.||.+.+-.... +.+ +
T Consensus 339 ~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~------~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~ 412 (493)
T PRK13580 339 KYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGL------TGRQAESALLDAGIVTNRNSIPSDPNGAWYT 412 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHH------HHHHHHHHHHHCCeEEccccCCCCCCCCCCC
Confidence 567788899999999999999987531 223577888864211 11245556778899987543222 122 4
Q ss_pred CEEEEEecc-----CCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFAN-----MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~ 426 (477)
..+||+... +++++++++++.|.++++.
T Consensus 413 srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 413 SGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred ceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 579999864 3589999999999999875
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=148.35 Aligned_cols=167 Identities=23% Similarity=0.275 Sum_probs=128.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH-HHHhhhCCcEEEEEecc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD-RDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~-~~~~~~~g~~~~~v~~~ 166 (477)
+.++++.++++++ .+++++++++|+++|+.+++.++..+|++|+++.|+|+++. ..+... |.++..++.+
T Consensus 2 ~~~~~~~l~~~~~--------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQ--------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELA-GAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhc-CCEEEEeccC
Confidence 3688999999984 34778999999999999999999988999999999999888 666655 9999999887
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
..+....+.+++++... +.+++++++++|+||+|...+ .++|.++|+++|+++|+|++|..+......
T Consensus 73 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~---- 140 (170)
T cd01494 73 DAGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG---- 140 (170)
T ss_pred CCCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc----
Confidence 54433333334433221 348899999999999999998 477888888999999999999865443221
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS 282 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~ 282 (477)
.... ..+..+++.|++|.+|. .++|++++
T Consensus 141 ~~~~-----~~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 141 VLIP-----EGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred cccc-----cccCCEEEEEcccccCC--CceEEEEe
Confidence 0111 22456788999999974 78999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-16 Score=157.45 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v 163 (477)
...|++.+|++.+ .+..+++++++.|+..++.+++.+||.|+++...|.+.... +... |++++.+
T Consensus 71 ~~~Le~~lA~l~g----------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~-Gi~v~~v 139 (436)
T PRK07812 71 QDVVEQRIAALEG----------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKL-GIEVSFV 139 (436)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcC-eEEEEEE
Confidence 5688888888876 23467777888899999999999999999999888775543 2334 7877777
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+ +. .|++++++++++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|++++.... .
T Consensus 140 d-d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~----~ 200 (436)
T PRK07812 140 E-DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL----I 200 (436)
T ss_pred C-CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----C
Confidence 4 21 278888887753 7899999999999999999 78888899999999999998863211 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeC
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSF 283 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~ 283 (477)
.++ ..+..+++.|++|.+|-.|--+|+++..
T Consensus 201 ~pl---------~~GaDivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 201 RPL---------EHGADIVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred Cch---------hcCCCEEEEecccccCCCCCeEEEEEEc
Confidence 111 1234477899999998777667777663
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-16 Score=158.15 Aligned_cols=354 Identities=14% Similarity=0.072 Sum_probs=201.5
Q ss_pred CCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 32 HPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 32 ~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
..+.+.+..||+..+ ...+ +.+.+.+.+++.-+ ............+.+..+|+.+.+....+-
T Consensus 29 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~~~~~~~~~~~~~~~~~lae~l~~~~~~~~ 95 (412)
T TIGR02407 29 LWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLA-------------DDGIIHSLDMATEAKREFLETFNEIILKPR 95 (412)
T ss_pred EEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHh-------------hccceeccccCcHHHHHHHHHHHHhccCcc
Confidence 334455667887543 3334 34666666665311 000000000113445555555543210000
Q ss_pred ccCCCcEEE-eCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCCc-
Q 011801 108 TFDPDRIVM-GGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNNF- 171 (477)
Q Consensus 108 ~~~~~~i~~-t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~f- 171 (477)
.. .+++++ ++++++|++.+++... ....+|+...-+|++....+...+|. .++.+|.......
T Consensus 96 ~~-~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 174 (412)
T TIGR02407 96 GL-DYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGD 174 (412)
T ss_pred CC-CceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccc
Confidence 01 135656 5899999999887642 22367888888888875433222121 1222332110000
Q ss_pred ccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh
Q 011801 172 KITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250 (477)
Q Consensus 172 ~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~ 250 (477)
.-+++.+++.+++......++.+|++.--.++.|. ..+.+.+++|.++|+++|+++|+||++.++.-.+..+. .. .
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a-~~-~- 251 (412)
T TIGR02407 175 VDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFS-FE-P- 251 (412)
T ss_pred hhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHH-hc-c-
Confidence 01356677766532111125677766544678898 57888999999999999999999999987533332211 11 0
Q ss_pred hhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCHHHHHHHHH---hcccCCCchHH----HHHHHHhcCChhhHHHHH
Q 011801 251 QEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFNDTVVNCGRK---MSSFGLVSSQT----QYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 251 ~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~~i~~~~~~---~~~~~~vs~~~----q~~~~~~L~~~~~~~~~~ 322 (477)
.+..+| +.++||.+| + |+|+|+++++++ + ..... ..+|+ .++++ +.++..++.++++ .+++
T Consensus 252 --~~v~PD----i~~~~K~lg-~~G~pigav~~~~~-~-~~~~~~~~~~T~~-gnpl~~aaa~a~l~~~i~~~~l-~~~~ 320 (412)
T TIGR02407 252 --AGIEPD----IVCLSKSIS-GYGLPLALTLIKPE-L-DVWKPGEHNGTFR-GNNLAFVTATAALEYYWSDDAF-EKAV 320 (412)
T ss_pred --cCCCCC----EEEechhcc-CCccceeEEEEchh-h-hccCCCccCCCCC-ccHHHHHHHHHHHHHHhcccHH-HHHH
Confidence 111344 236899998 7 999999999665 3 22211 12232 34442 2223324556554 4556
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
++..++++++.+.+.+.+.. +.......|+++|+.++... ...+++..++ +.||.+.+...+ .+.+|
T Consensus 321 ~~~g~~l~~~l~~l~~~~~~--~~~~vrg~Gl~~~l~l~~~~------~~~~~~~~~~-~~Gv~v~~~~~~----~~~lr 387 (412)
T TIGR02407 321 QRKSEIIQERLDRIVAEYPE--LIKQVRGRGLMQGIECGDGD------LAGKIAKAAF-ENGLIIETSGPN----DEVIK 387 (412)
T ss_pred HHHHHHHHHHHHHHHhhCCC--ceEeeecceeEEEEEecChH------HHHHHHHHHH-HCCCEEeccCCC----CCEEE
Confidence 66666666665555544432 22334457899999997521 1124556655 459999875322 35799
Q ss_pred EEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 403 VCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 403 l~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++.+.. +++++++++++|++.+++
T Consensus 388 ~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 388 LLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhC
Confidence 988764 999999999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-16 Score=157.85 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=124.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
..+|++++|++.+ .+..++|+++++|+.+++..+.++||.|+++...|++....+.+ ..|+++..++
T Consensus 66 ~~~le~~lA~l~g----------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 66 VAVLEERVAALEG----------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 6889999999986 23468899999999999998899999999999999876554432 1389988887
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++ |++++++++++ ++|+|++.+|+||+|.+.+ +++|.++|+++|+++|+|.+++.-.+. .
T Consensus 136 ~~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~----~ 195 (433)
T PRK08134 136 PG-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL----R 195 (433)
T ss_pred CC-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----C
Confidence 53 68899988864 8999999999999999999 888899999999999999998632221 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS 282 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~ 282 (477)
++ ..+..+++.|.+|.+|-+|-.+|.++.
T Consensus 196 pl---------~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 196 PF---------EHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred ch---------hcCCCEEEeccccccCCCCCceEEEEE
Confidence 11 124458889999999877777777655
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-16 Score=145.36 Aligned_cols=336 Identities=19% Similarity=0.214 Sum_probs=218.2
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
..+||.++.-..|.+.+.+.+.+... ...-|+...-...|.+.+|+.+++. ..+++++
T Consensus 22 ~~vDLRSDTvT~PTdeMr~am~eA~v-------------gDdVyGeD~tt~rLE~~vA~l~GKE---------AgLFv~S 79 (384)
T KOG1368|consen 22 RSVDLRSDTVTVPTDEMRRAMAEASV-------------GDDVYGEDPTTNRLEQRVAELFGKE---------AGLFVPS 79 (384)
T ss_pred eccccccccccCChHHHHHHHhhccc-------------CcccccCCccHHHHHHHHHHHhCcc---------ceeeecc
Confidence 35888888888888888887766421 2345666666789999999999853 2366666
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHH--HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH--HhCCCeeE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDR--DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ--EASINIKG 194 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~--~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~--~~~~~~k~ 194 (477)
|+.+-+-.++.-+-.||..|++.+-++--..+ .+...+|+.+.++.-. ++..+++++++.+++... -+.+.+++
T Consensus 80 GTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~L 157 (384)
T KOG1368|consen 80 GTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKL 157 (384)
T ss_pred cccccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceE
Confidence 65554444444455699999999877643222 2333347777777643 455789999999997422 23557899
Q ss_pred EEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCC--CCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 195 LIITNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 195 vii~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
|.+.|-+|-+| .++|.|++.++.++|+++|+.+.+|.+.. |+. ....++..+.. ..|.|-+ .|||.+|
T Consensus 158 IclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi---~NAavasgV~vk~i~~----~fDSVsi--CLSKglg 228 (384)
T KOG1368|consen 158 ICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI---FNAAVASGVPVKKICS----AFDSVSI--CLSKGLG 228 (384)
T ss_pred EEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh---hhHHHHcCCCHHHHHH----hhhhhhh--hhhccCC
Confidence 99999988777 99999999999999999999999999875 543 23366666655 3455544 7899998
Q ss_pred CCCceEEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEec
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLK 349 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~ 349 (477)
.| +|-|+..+..++..++.+ ...+..-.+.-.++++.|-.- ++.... .+.-.++...+.+.+...+ |++.-
T Consensus 229 AP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval---~~~~~~-L~~dHk~A~~lAe~~~~~~~i~v~v 301 (384)
T KOG1368|consen 229 AP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVAL---DENVPL-LRADHKRAKELAEYINTPEEIRVEV 301 (384)
T ss_pred CC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHh---hcchHH-HHHHHHHHHHHHHHhccccceeeec
Confidence 66 787765555555544332 333322222222222222211 111122 2222345566777777664 66654
Q ss_pred C-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHH-HHHHhh
Q 011801 350 S-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRI-AAFVQQ 426 (477)
Q Consensus 350 ~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l-~~~~~~ 426 (477)
+ -..+++.+.+... .+..+ ++++.+ +++||.+.+|.++. +|+.|.. +++++++.++..+ +.|+..
T Consensus 302 ~a~etNiv~~~l~q~----~~~~~-~l~~~~-~k~gi~lm~~~s~r------~Rivlh~Qvt~~~ve~~~~~~~k~~~~q 369 (384)
T KOG1368|consen 302 PAVETNIVNMVLCQA----RLTAE-ELCKFL-EKNGILLMGGASRR------IRIVLHHQVTDEDVEYVKSVLSKKFLKQ 369 (384)
T ss_pred chhhcceeeeecccc----cCCHH-HHHHHH-HHCCeEEeeccccc------eEEEEEEecCHHHHHHHHHHHHHHHHhh
Confidence 4 3446777666421 11222 466655 57799999887653 8999966 5999999999999 555544
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-15 Score=152.78 Aligned_cols=285 Identities=20% Similarity=0.251 Sum_probs=182.6
Q ss_pred ccCCCC--CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---h
Q 011801 81 IFQDYH--GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---R 155 (477)
Q Consensus 81 ~Y~~~~--G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~ 155 (477)
.|..+. -...|.+.+|+..+ .+.++++++++.|+..++.+++++||.|+++...|.+....++. .
T Consensus 48 ~Y~R~gnPt~~~le~~la~Le~----------g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~ 117 (386)
T PF01053_consen 48 IYSRYGNPTVRALEQRLAALEG----------GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR 117 (386)
T ss_dssp SBTTTC-HHHHHHHHHHHHHHT-----------SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH
T ss_pred ceeccccccHHHHHHHHHHhhc----------ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc
Confidence 455432 23567777777654 46799999999999999999999999999999999887655442 1
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-eEEEeccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN-IHLVCDEIYA 234 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~-~~lI~De~y~ 234 (477)
.|+++..++. -|++++++++++ ++++|++..|+||+..+.+ +++|+++|+++| +++|+|..++
T Consensus 118 ~gv~v~~~d~-------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 118 FGVEVTFVDP-------TDLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp TTSEEEEEST-------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred cCcEEEEeCc-------hhHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeecccc
Confidence 3899887764 268999998875 8999999999999999888 899999999998 9999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCC-HHHHHHHHHh-cccC-CCchHHHHHHHH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFN-DTVVNCGRKM-SSFG-LVSSQTQYLLAS 310 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~-~~i~~~~~~~-~~~~-~vs~~~q~~~~~ 310 (477)
..++-. + + ..+..+++.|++|.++ ....=.|.+++++ +.+...++.. ..++ .+++...+.+..
T Consensus 182 tp~~~~----p---L------~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~r 248 (386)
T PF01053_consen 182 TPYNQN----P---L------ELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLR 248 (386)
T ss_dssp HTTTC-----G---G------GGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHH
T ss_pred ceeeec----c---C------cCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhc
Confidence 431211 1 1 1244588999999985 2334478888766 4555444332 2333 356666666666
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-Ce-Ee-c----------------CCceEEEEeeccchhhccCchH
Q 011801 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-IN-CL-K----------------SNAGLFFWMDLRHLLKEKTLEG 371 (477)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~-~~-~----------------~~~g~~~~~~l~~~~~~~~~~~ 371 (477)
-|..- .-+.++..++...+.+.|+++. +. +. + ..+| .+.+++....
T Consensus 249 gl~Tl-------~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg-l~sf~l~~~~------- 313 (386)
T PF01053_consen 249 GLRTL-------PLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGG-LLSFELKGGE------- 313 (386)
T ss_dssp HHTTH-------HHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTS-EEEEEESSHH-------
T ss_pred CCCcH-------HHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCc-eeEEEeccch-------
Confidence 66663 3334555667777888888872 32 22 1 1234 6677777542
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQC-------------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~-------------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+....+++.-++. ..|.+++. ..++.+|||++. |+.+.+++.|+++++
T Consensus 314 --~~~~~f~~~l~l~-~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 314 --EAARRFLDALKLF-SIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp --HHHHHHHHH-SSS-EESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred --hhhHhHHhhhhhH-hhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 1234444444442 12223321 124689999995 667778888887764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=157.04 Aligned_cols=294 Identities=11% Similarity=0.034 Sum_probs=169.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCCC--Ccc-
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDISN--NFK- 172 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~--~f~- 172 (477)
.+.+++++++++|++.+++... .....|+...-+|++.........+. .+..+|..... .+.
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGE 182 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccC
Confidence 3689999999999999987621 12356888888887754322101010 11222221100 000
Q ss_pred -------cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 173 -------ITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 173 -------i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
-+++++++.+++.. ...++.+|++.--..-.|.+ .+.+.+++|.++|++||+++|+||+|.++...+..+.
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~ 261 (433)
T PRK08117 183 DPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261 (433)
T ss_pred chhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchh
Confidence 13455555554311 12356665555334556765 5788899999999999999999999998645443322
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
. +.. +..++ +.||||.+| +|+++|++++.++ +.+..... ......+++++.++.+.|+.-+ +.
T Consensus 262 ~--~~~---gv~pD----i~t~sK~lg-~G~pigav~~~~~-i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~--~~-- 326 (433)
T PRK08117 262 A--QTF---GVVPD----IMTIAKGIA-SGLPLSAVVASKE-LMEQWPLGSHGTTFGGNPVACAAALATLEVIK--EE-- 326 (433)
T ss_pred H--hhc---CCCCC----Eeehhhhcc-CCCcceeEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--hc--
Confidence 1 111 11222 469999999 9999999999654 43333221 1112357778887777775321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 323 VETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
...+++++..+++.+.|++ +++.......|+++++.+..............+++.++ +.||.+.+... ..
T Consensus 327 -~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g~----~~ 400 (433)
T PRK08117 327 -KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCGN----AG 400 (433)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecCC----CC
Confidence 1222333333444444443 23322234556788888853211111111223455554 56999876321 24
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++|+++.. ++++++++++++|.+++++
T Consensus 401 ~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 401 NVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 689999743 5999999999999999865
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=156.40 Aligned_cols=327 Identities=12% Similarity=0.095 Sum_probs=209.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccC---CCcEEEeCChHHHHHHHHHHhcC-----------CCCeEEEcCCCccc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFD---PDRIVMGGGATGANELIMFCLAN-----------PGDAFLVPSPYYAA 147 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~---~~~i~~t~G~t~al~~i~~~l~~-----------~Gd~vlv~~P~y~~ 147 (477)
|...++..++.+.+.+|+.+..|.+-.+. ...-++|+|+|+++..++.+-.+ +.-.|++.+-++..
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 33345678999999999999877321110 02478899999998877655321 11245567777888
Q ss_pred hHHHHhhhCCcE---EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 148 FDRDLSWRTGVQ---IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~~---~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
..+++... |+. ++.||++..+++++|+++|++++++..+++..+-+|+.+-.+.+||.+-+ +++|.++|+++|
T Consensus 194 v~Kaa~~l-Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~ 269 (490)
T PLN02880 194 LQKACQIA-GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNG 269 (490)
T ss_pred HHHHHHHc-CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcC
Confidence 88888887 884 78889886668899999999999987777766777777778899999999 888999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhcccC-----
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMSSFG----- 298 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~~~~----- 298 (477)
+|+++|.+|++.....+.+.. .+.. .....-+..+++|.++ ....+|+++..+... ...+.....|.
T Consensus 270 iwlHVDaA~gg~~~~~~~~~~---~l~g---ie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~ 342 (490)
T PLN02880 270 MWFHVDAAYAGSACICPEYRH---YIDG---VEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKAS 342 (490)
T ss_pred CEEEEehhhHHHHHhCHHHHH---HhcC---chhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccc
Confidence 999999999986443332211 1110 1123356779999985 888999999875432 22221111110
Q ss_pred -----------CC-c-----hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeec
Q 011801 299 -----------LV-S-----SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDL 360 (477)
Q Consensus 299 -----------~v-s-----~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l 360 (477)
++ . .+.-++....+... -+++..++.-+..+++.+.+++. ++++..+.....+.+++
T Consensus 343 ~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~-----g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~ 417 (490)
T PLN02880 343 QANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE-----NLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRL 417 (490)
T ss_pred cccCCCChhccCcCCCCcccHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEE
Confidence 00 0 11111112222222 23444444446667788888765 78776654333445566
Q ss_pred cch-hhccCchH-HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhh
Q 011801 361 RHL-LKEKTLEG-EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 361 ~~~-~~~~~~~~-e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~ 427 (477)
++. ......+. ..++.+++.++..+.+.+.. + .+..++|+|+.+. ++++++.+++.|.++.++.
T Consensus 418 ~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~--~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 418 VPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-L--SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred eCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-E--CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 531 11100010 12455666666667665432 2 3456999999875 5799999999999887654
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=144.95 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=202.4
Q ss_pred ccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH
Q 011801 71 EGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR 150 (477)
Q Consensus 71 ~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~ 150 (477)
.|+...+-+..|+++| ..|...||+|.+ .++.++-+.+-.|+..++-++..|.|+|+-..-.+.....
T Consensus 99 aGlssvrfIcGtq~iH--k~LE~kiAqfh~----------rED~ilypscfdANag~feail~pedAvfSDeLNhASIId 166 (417)
T KOG1359|consen 99 AGLSSVRFICGTQDIH--KLLESKIAQFHG----------REDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIID 166 (417)
T ss_pred CCccceeEEecchHHH--HHHHHHHHHHhC----------CCceEEeccccccchHHHHHhcChhhhhhccccccchhhh
Confidence 4455556678899987 899999999997 3566667777889999999999999999988888877665
Q ss_pred HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 151 DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 151 ~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
.++.. . .--.+|+..++..+..+.+. +.|+|+...--.-.|.+.| +++|.+++++||.++++|
T Consensus 167 GirLc-k-----------ry~h~dv~~l~~~l~~a~k~--r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiD 229 (417)
T KOG1359|consen 167 GIRLC-K-----------RYRHVDVFDLEHCLISACKM--RLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFID 229 (417)
T ss_pred hhHHH-h-----------hhccchhHHHHHHHHHhhhh--eEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEEEe
Confidence 55543 1 01135677777766654433 6676555445678899999 778888888999999999
Q ss_pred ccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHH-hcccCCCchHH----
Q 011801 231 EIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRK-MSSFGLVSSQT---- 304 (477)
Q Consensus 231 e~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~-~~~~~~vs~~~---- 304 (477)
|+++..+|+... ....+.+ ++..+..++.++++|++| +.| ||..++.+ +++.++. .++|...+++.
T Consensus 230 ecHaTgf~G~tG-rGt~E~~---~vm~~vdiinsTLgKAlGga~G---Gyttgp~~-li~llrqr~RpylFSnslppavV 301 (417)
T KOG1359|consen 230 ECHATGFFGETG-RGTAEEF---GVMGDVDIINSTLGKALGGASG---GYTTGPKP-LISLLRQRSRPYLFSNSLPPAVV 301 (417)
T ss_pred ecccceeecCCC-CChHHHh---CCCCcceehhhhhhhhhcCCCC---CCccCChh-HHHHHHhcCCceeecCCCChhhh
Confidence 999876665443 4444443 234567788899999997 555 99999665 4555544 34543222211
Q ss_pred ---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 305 ---QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 305 ---q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
..+...++.+. +...+.+.+.+++.+.++..|+++...+. ..+-+-+.+.-. .....+.+|+
T Consensus 302 ~~a~ka~dllm~s~--------~~i~~~~a~~qrfr~~me~aGftIsg~~h-PI~pv~lGda~l------A~~~ad~lLk 366 (417)
T KOG1359|consen 302 GMAAKAYDLLMVSS--------KEIQSRQANTQRFREFMEAAGFTISGASH-PICPVMLGDARL------ASKMADELLK 366 (417)
T ss_pred hhhHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHHhcCceecCCCC-CccceecccHHH------HHHHHHHHHh
Confidence 11122222221 22334556677788888888988776443 444444443211 1234566775
Q ss_pred hcCeEEeCCCCCCC--CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 382 DVKLNVSPGSSFQC--TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 382 ~~gI~v~pg~~f~~--~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
. ||.|..- +|.- .+...+|+.++.. ++|+++++++++.++.+.++
T Consensus 367 ~-Gi~Vigf-s~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 367 R-GIYVIGF-SYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 (417)
T ss_pred c-CceEEee-cCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence 5 9998643 3332 2334789888664 99999999999999887643
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=139.74 Aligned_cols=304 Identities=16% Similarity=0.217 Sum_probs=205.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
...+|.+.+|+|++ -|.+-+|+|+.++-+.++.+|+++||.|++..-++....-+++.. |+++..||-.
T Consensus 62 pI~~F~~dlaeFlg----------~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEra-gl~v~eVp~t 130 (382)
T COG1103 62 PIKDFLEDLAEFLG----------MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERA-GLNVAEVPNT 130 (382)
T ss_pred cHHHHHHHHHHHhC----------CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhc-CCeEEecCCC
Confidence 46789999999997 578999999999999999999999999999988754444456655 9999999976
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQEAS-INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~-~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
....|.++++...+.+++..+++ ..+.+.+++.|....|.+.+ -++++++|+++++.++...+|.- +.-..|
T Consensus 131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~----Grmpvs 203 (382)
T COG1103 131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV----GRMPVS 203 (382)
T ss_pred CCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee----cccccc
Confidence 66789999999999999888775 45777899988777777766 89999999999999999999972 222244
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------cCCCchHHHHHHHHhcCChh
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------FGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------~~~vs~~~q~~~~~~L~~~~ 316 (477)
..++ +..++++|-+|+|+ +.-.+|.+....+.-...+++..- ++ ++.-..-++.-|-+-+.
T Consensus 204 ~ke~--------g~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellG-CT~rGapivTlmASfP~ 273 (382)
T COG1103 204 GKEI--------GADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLG-CTVRGAPIVTLMASFPH 273 (382)
T ss_pred cccc--------CCCEEEecCccchh-ccCCeeEEeehhHHHHHHHhhcccccccceeeeec-ccccCchHHHHHhcCHH
Confidence 3333 45689999999997 666899998865443333333211 12 22222222222223332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEec--CCceEEEEeeccchhh--ccCchHHHHHHHHHHHhcCeE-EeCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLK--SNAGLFFWMDLRHLLK--EKTLEGEIALWRTIVNDVKLN-VSPG 390 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~--~~~g~~~~~~l~~~~~--~~~~~~e~~l~~~ll~~~gI~-v~pg 390 (477)
+.+.+.+-.+.+ +..+++.+.|+++| +.-+. |...-.+.+..|.+.. .+....---|.+. |+++||. |.||
T Consensus 274 -V~eRVkrWdeEv-~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~E-LK~RgI~GI~~G 350 (382)
T COG1103 274 -VVERVKRWDEEV-EKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEE-LKKRGIHGIQPG 350 (382)
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHH-HHhcCccccccC
Confidence 233333333333 34578888888874 54332 3333344445453211 0000000012222 4455764 4554
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 391 SSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
. ..||.+++-.++.|+++..+++++++++++
T Consensus 351 ~------Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 351 Q------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred c------eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 2 458999997789999999999999999874
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-16 Score=152.05 Aligned_cols=166 Identities=22% Similarity=0.292 Sum_probs=135.8
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCC----eEEEcCCCccchHHH---HhhhC
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGD----AFLVPSPYYAAFDRD---LSWRT 156 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd----~vlv~~P~y~~~~~~---~~~~~ 156 (477)
..+..+-|+.||++++ .++.+|++|+|+|++++++++... .++| .|++..-.|+..... ++..
T Consensus 84 ~~~~E~aR~~VAklIn--------Ad~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~- 154 (428)
T KOG1549|consen 84 EDAVEAAREQVAKLIN--------ADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEE- 154 (428)
T ss_pred hHHHHHHHHHHHHHhC--------CCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhc-
Confidence 3457889999999987 688889999999999999998874 3456 888888778765533 4444
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|.++..+|++ ++..+|.+.++++++. ++++|.|..-+|-+|.++| +++|+++|+++|+++++|.+++
T Consensus 155 g~~Vt~lpv~--~~~~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQa-- 221 (428)
T KOG1549|consen 155 GLEVTYLPVE--DSGLVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQA-- 221 (428)
T ss_pred CeEEEEeccC--ccccccHHHHHHhcCC------CceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhh--
Confidence 8999999987 3456799999999986 9999999999999999999 8999999999999999999997
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN 284 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~ 284 (477)
.+ .-.+.+.++ +..+...|.+|.+|.|| +|++|+..
T Consensus 222 -vG-~i~vDV~el--------n~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 222 -VG-KIPVDVQEL--------NADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred -cC-CccccHHHc--------CchheeeecccccCCCc--ceEEEEcc
Confidence 33 223555544 33456679999999999 99999964
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-15 Score=152.45 Aligned_cols=353 Identities=14% Similarity=0.091 Sum_probs=197.0
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+.+.- +.+..+.......+.+..+|+.+.+..+. .
T Consensus 52 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~p~---~ 115 (443)
T PRK06058 52 DVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQV-------------ARFTHTCFMVTPYEGYVAVAEQLNRLTPG---D 115 (443)
T ss_pred eCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCCC---C
Confidence 3445667887544 3334 3466666666531 11111211112345666667766543220 0
Q ss_pred CCCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC--C--
Q 011801 110 DPDRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS--N-- 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~-- 169 (477)
..+.+++++++++|++.+++. ..+ .++|+...++|++....+...++. .+..++.... .
T Consensus 116 ~~~~v~f~~sGseA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (443)
T PRK06058 116 HEKRSALFNSGAEAVENAVKIARSYTG-RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPK 194 (443)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhhC-CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCccccccc
Confidence 125789999999999999874 333 378999999999876443221111 1122221100 0
Q ss_pred CcccC-HHHHHHHHHHHHH--hCCCeeEEEEeCCCCCcc-cC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 170 NFKIT-REALEAAYERAQE--ASINIKGLIITNPSNPLG-TT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 170 ~f~i~-~~~l~~~~~~~~~--~~~~~k~vii~nP~NPtG-~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++..+ .+.+++.++...+ ...++.+|+ ..|-+..| .+ .+.+.+++|.++|++||+++|.||++.++...+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa 273 (443)
T PRK06058 195 GLATDGEEAAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFA 273 (443)
T ss_pred ccccchHHHHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhH
Confidence 00111 1222222221111 123676655 56766654 43 4577899999999999999999999998654444321
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
. +. .+..+| ++ +++|.+| .|+++|+++++++ +.+.+... ..| ..+++++.++.+.|+.-+ +.
T Consensus 274 ~--~~---~gv~PD--iv--~~gK~l~-~G~Pi~av~~~~~-i~~~~~~~~~~~T~-~gnpl~~aaa~a~L~~~~--~~- 338 (443)
T PRK06058 274 C--EH---EGIVPD--LI--TTAKGIA-GGLPLSAVTGRAE-IMDAPHPGGLGGTY-GGNPVACAAALAAIETIE--ED- 338 (443)
T ss_pred H--Hh---cCCCCC--EE--EEccccc-CCCccEEEEEcHH-HHhhccCCCCCCCC-CCCHHHHHHHHHHHHHHH--Hc-
Confidence 1 11 122334 22 5589999 9999999999554 44443322 222 367788888777775311 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
...++++++.+++.++|+++ ++...-...|.++.+.+.... .....+....++..++ +.||.+.|+..|+
T Consensus 339 --~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~~-- 413 (443)
T PRK06058 339 --DLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTYG-- 413 (443)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCCC--
Confidence 22333444445555555542 321112234566666664211 0001111123445554 5699999875553
Q ss_pred CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++|+..+. ++++++++++++|.+++++
T Consensus 414 --~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 414 --NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred --CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 589997655 4999999999999999864
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-15 Score=152.56 Aligned_cols=326 Identities=14% Similarity=0.122 Sum_probs=209.0
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccC---CCcEEEeCChHHHHHHHHHHhcC-----------CCCeEEEcCCCccc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFD---PDRIVMGGGATGANELIMFCLAN-----------PGDAFLVPSPYYAA 147 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~---~~~i~~t~G~t~al~~i~~~l~~-----------~Gd~vlv~~P~y~~ 147 (477)
|...++..++.+.+.+|+.+..|.+-.+- ...-++++|+|+|+..++.+-.+ |.-.|++.+-++..
T Consensus 162 ~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~S 241 (539)
T PLN02590 162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS 241 (539)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHH
Confidence 44456778999999999999887321100 13467899999999877655321 11245566777888
Q ss_pred hHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 148 FDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+.+++... |+ +++.||++..+++++|+++|++++++..+.+..+-+|+.+-.+..||.+=+ +++|.++|+++|
T Consensus 242 v~KAa~il-Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~~g 317 (539)
T PLN02590 242 FRKACLIG-GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKKYG 317 (539)
T ss_pred HHHHHHHc-CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhC
Confidence 88888876 87 588899886668999999999999987777767777777878889999977 889999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-HHHHHHH----hcc---
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-VVNCGRK----MSS--- 296 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-i~~~~~~----~~~--- 296 (477)
+|+.+|.+|++...-.+.+......++ ..+ -+...++|.+. ..+-+|.++..+.. +...+.. +..
T Consensus 318 ~WlHVDaA~GG~al~~~~~r~~~~Gie----~AD--Sit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~ 390 (539)
T PLN02590 318 IWLHVDAAYAGNACICPEYRKFIDGIE----NAD--SFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVS 390 (539)
T ss_pred CeEEEecchhhhhhcChhhHHHhcCCc----cCC--EEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCccc
Confidence 999999999986543333222111111 123 34569999986 77899999887653 2222211 100
Q ss_pred -------cC--C--Cc----hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC-CceEEEEee
Q 011801 297 -------FG--L--VS----SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS-NAGLFFWMD 359 (477)
Q Consensus 297 -------~~--~--vs----~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~-~~g~~~~~~ 359 (477)
+. + .+ .+.-++....+... -+++..++.-+..+++.+.+++. ++++..+ .-+..+ ++
T Consensus 391 ~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~-----G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVc-Fr 464 (539)
T PLN02590 391 KKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSE-----NLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVC-FR 464 (539)
T ss_pred ccccCCCccccCCCCCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEE-EE
Confidence 00 0 11 12222222333222 24555556667778888888776 6776654 443333 44
Q ss_pred ccc-hhhccCch-HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhh
Q 011801 360 LRH-LLKEKTLE-GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 360 l~~-~~~~~~~~-~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+ .......+ --.++.+++.+.-.+.+.+.. . .+..++|+|+.+. ++++++.+++.|.+...+.
T Consensus 465 ~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~-~--~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 465 LAPVDGDEDQCNERNRELLAAVNSTGKIFISHTA-L--SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533 (539)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeE-E--CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 432 11110001 112455566555445554432 1 2345899999875 7999999999999886553
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=149.51 Aligned_cols=334 Identities=17% Similarity=0.226 Sum_probs=207.2
Q ss_pred CCCCcccccc--ccccccc--cHHHHHHHHHhCCCCcccccccccccccccc-cCCCCCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQL--GLAENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAI-FQDYHGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l--~~~~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~~~~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+....||| |.+.|.+ +.|.+.+.+++..+. +-..++ | ..+.+.++|+.+.+..+
T Consensus 38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~k----------l~h~sn~~-----~~~~~~~la~~L~~~s~---- 98 (404)
T COG4992 38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEK----------LWHVSNLF-----YNEPQAELAEKLVELSP---- 98 (404)
T ss_pred CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHH----------hhhccccc-----CChHHHHHHHHHHhhCc----
Confidence 4567778998 4566777 457777777763221 111122 2 13555666666654311
Q ss_pred cCCCcEEEeCChHHHHHHHHHHh---cC-C-CCeEEEcCCCccchHHHHhhhCCcE-EE--EEeccCC---CCcccCHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCL---AN-P-GDAFLVPSPYYAAFDRDLSWRTGVQ-IV--PVHCDIS---NNFKITREA 177 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l---~~-~-Gd~vlv~~P~y~~~~~~~~~~~g~~-~~--~v~~~~~---~~f~i~~~~ 177 (477)
..|+|+++|+++||++.++..- .. + ..+|+...-+|++-.-..-..+|-. .. .-|+.+. -.|+ |+++
T Consensus 99 -~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-Di~a 176 (404)
T COG4992 99 -FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-DIEA 176 (404)
T ss_pred -cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-CHHH
Confidence 3689999999999999999764 22 2 2378888888866332111111111 00 0011110 1122 7899
Q ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC
Q 011801 178 LEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256 (477)
Q Consensus 178 l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~ 256 (477)
+++++.+ ++.+|++.--.--.|...+ .+-++++-++|++||+++|.||+..++.-.+.-|.- +..+..
T Consensus 177 l~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~-----e~~gV~ 245 (404)
T COG4992 177 LEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAY-----EHYGVE 245 (404)
T ss_pred HHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHH-----HHhCCC
Confidence 9999976 7888887755777887654 455999999999999999999999986555543221 111113
Q ss_pred CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH---hcccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHHH
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK---MSSFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRLA 330 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~---~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l~ 330 (477)
+| +.++.|.+| .|+.+|.+++. +.+...+.. -+.|+ .++++.+++.+.|+ ++++ ++ +.+
T Consensus 246 PD----I~tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfG-GNpLacAv~~a~l~~l~~e~l----l~----~v~ 310 (404)
T COG4992 246 PD----ILTLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFG-GNPLACAVALAVLEVLLEEGL----LE----NVR 310 (404)
T ss_pred CC----EEEeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCC-cCHHHHHHHHHHHHHHcchhH----HH----HHH
Confidence 33 337889999 99999999996 443333221 23444 56666666555544 4333 22 233
Q ss_pred HHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec
Q 011801 331 KRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406 (477)
Q Consensus 331 ~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~ 406 (477)
+.-++|.+.|.++ ++-..-..-|+++-+.+...... .++.+.+. +.||++.+. ++..+|+...
T Consensus 311 ~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a------~~~~~~~~-~~gvL~~~a------~~~ViR~~Pp 377 (404)
T COG4992 311 EKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRA------RDIVRALR-EEGVLVLPA------GPNVIRFLPP 377 (404)
T ss_pred HHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcccH------HHHHHHHH-HCCeEEecC------CCCeEEecCC
Confidence 4445555656554 21111234578998888754211 13555555 559998764 3568999987
Q ss_pred cC-CHHHHHHHHHHHHHHHhhh
Q 011801 407 NM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 407 ~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
.. ++|++++++++|++++.+.
T Consensus 378 L~i~~eei~~~~~~l~~~l~~~ 399 (404)
T COG4992 378 LVITEEEIDEALDALERALAAA 399 (404)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh
Confidence 75 9999999999999999763
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-15 Score=150.57 Aligned_cols=292 Identities=10% Similarity=0.050 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcE--EEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRI--VMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i--~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
..++.+.+.+++.+..| .+++++ ++|+|+|+++..++... ..+++.|+++.-.|......++.. |.+...+
T Consensus 63 ~~~~e~~~~~~~a~l~g----~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~l-g~~~~~V 137 (380)
T PRK02769 63 SFDFERDVMNFFAELFK----IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLL-RIKSRVI 137 (380)
T ss_pred hHHHHHHHHHHHHHHhC----CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHc-CCCCcee
Confidence 45666666666666555 444444 88999999987665443 257889999999999998888776 8888888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC---eEEEecccccccccCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN---IHLVCDEIYAATVFSS 240 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~---~~lI~De~y~~~~~~~ 240 (477)
++++ ++.+|+++|++++++. +.++.+|+++.++|+||.+-| +++|.++|+++| +++++|.++++....-
T Consensus 138 ~~~~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~ 209 (380)
T PRK02769 138 TSLP--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPF 209 (380)
T ss_pred ccCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecc
Confidence 8764 5679999999999763 446889999999999999999 777888888998 7999999998743211
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------cCCCc---hHHHHHH
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------FGLVS---SQTQYLL 308 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------~~~vs---~~~q~~~ 308 (477)
........+ ..+...+..|.+|.+| ....+|.++..++.+... ..... .++-+ .+..+++
T Consensus 210 ~~~~~~~d~------~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~-~~~~~yl~~~d~t~~GSR~g~~~l~lw~a 281 (380)
T PRK02769 210 VNNPPPFSF------ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERI-SVDVDYIGSRDQTISGSRNGHTALLLWAA 281 (380)
T ss_pred cCccccCCc------cCCCCEEEECCcccCC-CCCCcEEEEEehhhhhhc-ccCccccCCCCCCccCCCCcHHHHHHHHH
Confidence 000000001 1134466789999886 456799999876544332 11111 11112 2233333
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
...+.... +++..++..+..+++.+.|++.|+++......+.+.++.+. + ++ . .|..+.
T Consensus 282 L~~lg~~G-----~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~--------~--~~----~--~~w~l~ 340 (380)
T PRK02769 282 IRSLGSKG-----LRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS--------E--RI----W--KKWHLA 340 (380)
T ss_pred HHHHCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC--------H--HH----H--hCeeEc
Confidence 33333332 45666777788889999999889887664444555555442 1 11 2 255554
Q ss_pred CCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 389 PGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 389 pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
+- ++++|+++... +.+.++.+++.|...+...+
T Consensus 341 ~~-------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~~ 374 (380)
T PRK02769 341 TS-------GNQAHIITMPHHNKQQIDSLIDELIFDLKNPN 374 (380)
T ss_pred cc-------CCEEEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence 32 34799999654 88899999999988876533
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-15 Score=153.60 Aligned_cols=172 Identities=20% Similarity=0.293 Sum_probs=130.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---------cCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---------ANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---------~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
..+|++++|++++ .+++++++|+++|+.+++.++ .+|||.|+++.|+|+.+...+... |+
T Consensus 65 ~~~fe~~lA~~~g----------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~-G~ 133 (438)
T PRK15407 65 NDAFEKKLAEFLG----------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN-GL 133 (438)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc-CC
Confidence 4899999999986 246999999999999998876 478999999999999998888776 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-c
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-V 237 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~ 237 (477)
+++.++++. .+|.+|++++++++.+ ++|+|+++++ +|...+ +++|.++|+++|++||+|++++.. .
T Consensus 134 ~pv~vdvd~-~~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~d---l~~I~~la~~~gi~vIeDaa~a~G~~ 200 (438)
T PRK15407 134 VPVFVDVEL-PTYNIDASLLEAAVSP------KTKAIMIAHT---LGNPFD---LAAVKAFCDKHNLWLIEDNCDALGST 200 (438)
T ss_pred EEEEEecCC-CcCCcCHHHHHHHcCc------CCeEEEEeCC---CCChhh---HHHHHHHHHHCCCEEEEECccchhhh
Confidence 999998874 4688999999998754 7899998864 565444 888999999999999999999732 1
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEeCCHHHHHHHHHhccc
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYSFNDTVVNCGRKMSSF 297 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~~~~~i~~~~~~~~~~ 297 (477)
+.+...- ..+ .+.+.||+ |.+. .|- -|+|+.+++.+.+.++.+..+
T Consensus 201 ~~g~~~G-----------~~g-d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~~~ 248 (438)
T PRK15407 201 YDGRMTG-----------TFG-DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFRDW 248 (438)
T ss_pred cCCeeee-----------ccC-ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHHHh
Confidence 2221111 111 24456664 6664 343 599999988887766655443
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-15 Score=149.05 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=149.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
...|.+.+|+.-+ .+..+++++++.|+.+++.+++++||.|+++...|.+....+ +.. |+++..+
T Consensus 64 ~~~le~~la~LEg----------~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~-Gi~v~~v 132 (395)
T PRK08114 64 HFSLQEAMCELEG----------GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKL-GVTTTWF 132 (395)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhc-CcEEEEE
Confidence 4577777777643 457888888999999999999999999999998897766544 434 9998877
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~ 241 (477)
+. .|.+++++++++ ++|+|++..|+||+|.+.+ +++|+++|+++ |+.+|+|.+++.-.+
T Consensus 133 d~-------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~--- 193 (395)
T PRK08114 133 DP-------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL--- 193 (395)
T ss_pred CC-------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc---
Confidence 63 257888888754 7899999999999999999 88899999998 499999999973211
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHH-HhcccC-CCchHHHHHHHHhcCChhhH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGR-KMSSFG-LVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~-~~~~~~-~vs~~~q~~~~~~L~~~~~~ 318 (477)
.... ..+..++++|.+|.++-+| .-.|.++.+++ ..+.++ .....+ .+++...+++.+-|+.-.
T Consensus 194 --~~pl--------~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~-- 260 (395)
T PRK08114 194 --FKAL--------DFGIDISIQAGTKYLVGHSDAMIGTAVANAR-CWEQLRENSYLMGQMVDADTAYMTSRGLRTLG-- 260 (395)
T ss_pred --cCHH--------HcCCcEEEEcCcccccCCCcceeEEEEcCHH-HHHHHHHHHHhccCCCCHHHHHHHHcCCCcHH--
Confidence 1111 2355689999999765444 67786666443 333232 222222 356777777767676633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
-+.++..+....+.+.|+++
T Consensus 261 -----lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 261 -----VRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred -----HHHHHHHHHHHHHHHHHHcC
Confidence 33445566667788888876
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=146.44 Aligned_cols=173 Identities=23% Similarity=0.352 Sum_probs=137.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
..+|.+++|+|++ ....+.++++|.|+++++.+| .+|||.|++|.-+|......+.+. |++++.+++|
T Consensus 36 v~~FE~~~ae~~G----------~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~-Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLG----------VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLV-GAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHc-CCeEEEEecC
Confidence 5899999999997 567888899999999999966 599999999999999999888887 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~~~s 245 (477)
+ +.|++|++.+|+++.+ ++|+|+.. +-.|...+ +++|.++|++||++||+|.+.+-. .|.+...-+
T Consensus 105 ~-~T~nid~~~ie~aIt~------~tKAIipV---hl~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt 171 (374)
T COG0399 105 P-DTLNIDPDLIEAAITP------RTKAIIPV---HLAGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGS 171 (374)
T ss_pred C-cccCCCHHHHHHHccc------CCeEEEEe---hhccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecCccccc
Confidence 6 5789999999999986 79999866 55788888 677777788999999999998721 122222111
Q ss_pred HHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccC
Q 011801 246 VAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG 298 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~ 298 (477)
.+ .+.+.|| +|.++ .| --|.|+++++.+.+.++.++..+
T Consensus 172 -----------~G-d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG 212 (374)
T COG0399 172 -----------FG-DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHG 212 (374)
T ss_pred -----------cc-ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhC
Confidence 11 2345566 69998 55 67999999988888777665443
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-15 Score=165.34 Aligned_cols=308 Identities=13% Similarity=0.106 Sum_probs=190.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC--cEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHH---HhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD--RIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRD---LSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~--~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~ 161 (477)
+.+.|+.||+|++ .+++ .|++|+|+|+|+.+++..+ .++||.|++..-.|+..... ++.. |+++.
T Consensus 80 ~e~aR~~ia~~lg--------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~-G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFN--------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEK-GAAAI 150 (805)
T ss_pred HHHHHHHHHHHhC--------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHc-CCeEE
Confidence 6788999999987 4454 5899999999999999887 67899999977667654432 2333 88888
Q ss_pred EEeccCC------CCcccC--HHHHHHHHHH----HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc-----C
Q 011801 162 PVHCDIS------NNFKIT--REALEAAYER----AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK-----N 224 (477)
Q Consensus 162 ~v~~~~~------~~f~i~--~~~l~~~~~~----~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~-----~ 224 (477)
.++++.. ....++ .++|++.++. ....+.++++|.++.-+|-||.++|.+++..+.+.+.++ +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 8877521 111222 2556654321 011123668999999999999999966544444433222 3
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cc-------
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SS------- 296 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~------- 296 (477)
+++++|.+.+. .. ....+.++ +..+++.|++|.+|.| ..+|+++..++.+.. +... ..
T Consensus 231 ~~v~vDaaQ~~---g~-~piDv~~~--------~~Dfl~~S~HK~~GgP-~G~G~L~vr~~~~~~-l~p~~~GGg~~~~~ 296 (805)
T PLN02724 231 WMVLLDAAKGC---GT-SPPDLSRY--------PADFVVVSFYKIFGYP-TGLGALLVRRDAAKL-LKKKYFGGGTVAAS 296 (805)
T ss_pred eEEEeehhhhc---CC-CCCChhhc--------CCCEEEEecceeccCC-CCceEEEEehhhhhh-hcCCccCCCceEEE
Confidence 68999999862 22 22343322 4457888999999822 348999986654332 2211 00
Q ss_pred ------------------cCCCchHHHHHHHHhcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhC-------CCeEecC
Q 011801 297 ------------------FGLVSSQTQYLLASMLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQV-------GINCLKS 350 (477)
Q Consensus 297 ------------------~~~vs~~~q~~~~~~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~-------gi~~~~~ 350 (477)
.|+.+.....++.+.++ ++.+ -+++..++..+..+++.+.|.++ ++.++.+
T Consensus 297 ~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~---~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~ 373 (805)
T PLN02724 297 IADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK---LLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGN 373 (805)
T ss_pred ecccceeeccccHHHHhcCCCcchhHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCC
Confidence 01222222233333332 2121 23455667777778888888876 3566643
Q ss_pred C--------ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--------------------------
Q 011801 351 N--------AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-------------------------- 396 (477)
Q Consensus 351 ~--------~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-------------------------- 396 (477)
. .+-.+.+.+... +...+.. .....++.++||.++.|..|.+.
T Consensus 374 ~~~~~~~~~r~~ivsFnv~~~-~~~~v~~--~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~ 450 (805)
T PLN02724 374 HTFKLEFHIQGPIVTFNLKRA-DGSWVGH--REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDD 450 (805)
T ss_pred CCCCCCcccccCEEEEEEEcC-CCCEeCH--HHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCch
Confidence 2 123444444431 1111111 12455677889999999887521
Q ss_pred -------CCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 397 -------EPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 397 -------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
..|++|+||+.+ +.++++.+++.|++..
T Consensus 451 ~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 451 QDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred hheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 138999999987 8999999999999955
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=149.89 Aligned_cols=289 Identities=15% Similarity=0.118 Sum_probs=166.2
Q ss_pred cEEE-eCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC---------c---EEEEEeccCCCCcc-cCHH
Q 011801 113 RIVM-GGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG---------V---QIVPVHCDISNNFK-ITRE 176 (477)
Q Consensus 113 ~i~~-t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g---------~---~~~~v~~~~~~~f~-i~~~ 176 (477)
.+++ ++++++|++.+++... ....+|+...-+|++.....-..+| . .+..+|........ -+++
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 183 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLA 183 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHH
Confidence 5656 5899999999887642 2235788888888876432211111 0 12333332100000 1567
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccC
Q 011801 177 ALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~ 255 (477)
++++.+++......++.+|++.--..-.|. +.+.+.+++|.++|++||+++|+||++.++...+..+ .... .+.
T Consensus 184 ~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~----~~v 258 (425)
T PRK09264 184 YLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFER----AGI 258 (425)
T ss_pred HHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhh----cCC
Confidence 777777543111125666665533455675 5688899999999999999999999998754333221 1111 112
Q ss_pred CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH--HhcccCCCchHHHHHHHHhc----CChhhHHHHHHHHHHHH
Q 011801 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR--KMSSFGLVSSQTQYLLASML----SDDEFVDNFLVETSKRL 329 (477)
Q Consensus 256 ~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~--~~~~~~~vs~~~q~~~~~~L----~~~~~~~~~~~~~~~~l 329 (477)
.+| +.+|||.+|..|+++|+++++++ +..... ....|+ .++++..++.+.| .++++ .+++++..+.+
T Consensus 259 ~PD----i~t~~K~l~~~G~pigav~~~~~-i~~~~~~~~~~T~~-gnp~~~aaa~a~l~~~~~~~~l-~~~~~~~g~~l 331 (425)
T PRK09264 259 TPD----IVTLSKSISGYGLPMALVLIKPE-LDVWKPGEHNGTFR-GNNLAFVTATAALEEYWSDDAF-EKEVKAKGELV 331 (425)
T ss_pred CCC----EEEeccccCCCccceEEEEEchh-hhccCCCccCCCCC-CCHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence 344 23779999944999999999755 332111 112222 3444444333333 33333 33344444444
Q ss_pred HHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-
Q 011801 330 AKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN- 407 (477)
Q Consensus 330 ~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~- 407 (477)
+++.+.+.+ +.+ +.......|+++|+.++... ....++..++ +.||.+.++..+ ...+|++...
T Consensus 332 ~~~l~~l~~---~~~~~~~~vrg~Gl~~~i~l~~~~------~~~~l~~~~~-~~Gv~~~~~~~~----~~~lr~~p~l~ 397 (425)
T PRK09264 332 RERLEEIAA---KYPGLGAEVRGRGMMQGIDFGDGE------LAGKIAAEAF-ENGLIIETSGPE----DEVVKLLPPLT 397 (425)
T ss_pred HHHHHHHHH---hCCCceecceecccEEEEEecChH------HHHHHHHHHH-HCCCEEeccCCC----CCEEEEeCCCC
Confidence 443333322 222 11122346789999986421 1124555555 459999875432 3578888654
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 011801 408 MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 408 ~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++++++++++|++++++.
T Consensus 398 ~t~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 398 IDEEELEEGLDILEEAVAEV 417 (425)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 38999999999999998653
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-15 Score=161.61 Aligned_cols=315 Identities=17% Similarity=0.163 Sum_probs=206.2
Q ss_pred cccccccCCC---CCcH----HHHHHHHHHHhcccCCCCccCCCcEEEeCChH----HHHHHHHHHhcCC-CC----eEE
Q 011801 76 FKDIAIFQDY---HGLP----EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT----GANELIMFCLANP-GD----AFL 139 (477)
Q Consensus 76 ~~~~~~Y~~~---~G~~----~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t----~al~~i~~~l~~~-Gd----~vl 139 (477)
|..+.-|+|. +|+. ++|+.++++++ .+.|.++++++ +++.++++.+.++ || .|+
T Consensus 551 ~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g----------~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vl 620 (993)
T PLN02414 551 FANIHPFAPVDQAQGYQEMFEDLGDLLCEITG----------FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCI 620 (993)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEE
Confidence 3445555553 3444 55555555554 38999999998 8999999998766 88 899
Q ss_pred EcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHH
Q 011801 140 VPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSF 219 (477)
Q Consensus 140 v~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~ 219 (477)
++...+......+... |++++.++++. +..+|+++|++++++. ..++++|++++|||-+|...+ +++|+++
T Consensus 621 i~~~aH~sn~a~a~~~-G~~vv~v~~d~--~G~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~i 691 (993)
T PLN02414 621 IPVSAHGTNPASAAMC-GMKIVVVGTDA--KGNINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDI 691 (993)
T ss_pred eCCCcCccCHHHHHHC-CCEEEEeccCC--CCCcCHHHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHH
Confidence 9999998888777765 99999999974 3479999999999742 126899999999999999977 8899999
Q ss_pred HHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC----CCCceEEEEEeCCHHHHHHHH---
Q 011801 220 INDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG----LPGFRVGIVYSFNDTVVNCGR--- 292 (477)
Q Consensus 220 ~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g----~~G~RvG~i~~~~~~i~~~~~--- 292 (477)
|+++|+++++|.++..-... ..... ..+..++++|.+|.|+ ..|-.+|++++.+. +...+-
T Consensus 692 ah~~Galv~vDgAq~~a~~~---l~~p~--------~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~p~lPg~~ 759 (993)
T PLN02414 692 IHDNGGQVYMDGANMNAQVG---LTSPG--------FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHP 759 (993)
T ss_pred HHHcCCEEEEEecCHHhccC---cCCcc--------ccCCCEEEecCCccCCcCcccCCCCeeeEEEchh-hcccCCCCc
Confidence 99999999999999532111 11111 2355678889999775 33456899988543 222111
Q ss_pred -----------HhcccCCCch--HHHH----HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 293 -----------KMSSFGLVSS--QTQY----LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 293 -----------~~~~~~~vs~--~~q~----~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
+-++.++++. ..|. .+..++..-. .+-+++..++...+..++.+.|.+. ++.+..+.+..
T Consensus 760 v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~ 837 (993)
T PLN02414 760 VVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTC 837 (993)
T ss_pred cccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCe
Confidence 0011222221 1111 1122222211 2235666677777888899988763 44443333321
Q ss_pred E--EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 355 F--FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 355 ~--~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
| +.++++...+..... ..++.++|+ ++||..- ...| ..++++||+.... +.+++|+++++|+.+.++.+
T Consensus 838 ~hEfv~~~~~l~~~~g~~-~~di~krL~-d~Gihap-t~~~--pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 838 AHEFIIDLRPFKNTAGIE-PEDVAKRLM-DYGFHAP-TMSW--PVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred eeeEEEeccccccccCCC-HHHHHHHHH-HcCcEEe-eecc--ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 1 234555322111112 235778888 7799753 3334 2478999999765 89999999999998886654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=148.47 Aligned_cols=278 Identities=13% Similarity=0.087 Sum_probs=166.9
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHH-H-----Hhhh-CCc--EEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDR-D-----LSWR-TGV--QIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~-~-----~~~~-~g~--~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+++.|+..++.+|++|||+|+..+....++.. . .+.. .+. +++++..+. .+..+|+++|++.+++.
T Consensus 107 ~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~--- 182 (475)
T PLN03226 107 LSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLF--- 182 (475)
T ss_pred CchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhc---
Confidence 566889999999999999999985532222211 1 1111 011 122444443 35679999999988643
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++|+|++ ..++ +|...+ +++|.++|+++|+++++|+++...+.......+. + ....++++|++|
T Consensus 183 --~pklIv~-~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p---~------~~~Div~~t~hK 246 (475)
T PLN03226 183 --RPKLIIA-GASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP---F------EYCDVVTTTTHK 246 (475)
T ss_pred --CCeEEEE-ecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC---C------CCCeEEEecCcc
Confidence 6776544 3444 677777 6678888999999999999997543333221110 1 133478899999
Q ss_pred ccCCCCceEEEEEeCCHHH----------HHH---HHHhcc--cCCCchHHH-HHHHHhcCChhhHHHHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIVYSFNDTV----------VNC---GRKMSS--FGLVSSQTQ-YLLASMLSDDEFVDNFLVETSKRLAKR 332 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i----------~~~---~~~~~~--~~~vs~~~q-~~~~~~L~~~~~~~~~~~~~~~~l~~r 332 (477)
++ .|.+-|+|+++++.. .+. ...... +.+...+.+ .+++..|..- .+.-.++.++++.++
T Consensus 247 ~L--~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i--~~~~~~~~~~~~~~n 322 (475)
T PLN03226 247 SL--RGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA--MTPEFKAYQKQVKAN 322 (475)
T ss_pred cc--cCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH--hCcCHHHHHHHHHHH
Confidence 98 233448888865422 012 111111 211112222 2222222210 011124557788888
Q ss_pred HHHHHHHHhhCCCeEecCC-ceEEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCC---CCCCCEEEEEe--
Q 011801 333 HHNFTKGLEQVGINCLKSN-AGLFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ---CTEPGWFRVCF-- 405 (477)
Q Consensus 333 ~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~---~~~~~~~Rl~~-- 405 (477)
.++|.+.|.+.|+++..+. ....+++++.. .+.. .-....+++.||.+..+...+ +-.+..+|++.
T Consensus 323 a~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~-------~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~ 395 (475)
T PLN03226 323 AAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTG-------SRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPA 395 (475)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCH-------HHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHH
Confidence 8999999999999887632 23566788743 2221 124556778899987664221 12345689844
Q ss_pred ---ccCCHHHHHHHHHHHHHHHhh
Q 011801 406 ---ANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 406 ---~~~~~e~l~~~l~~l~~~~~~ 426 (477)
..+++++++++.+.|.++++.
T Consensus 396 lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 396 MTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHH
Confidence 335789999999999999874
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-14 Score=143.25 Aligned_cols=207 Identities=16% Similarity=0.191 Sum_probs=139.4
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~ 162 (477)
-..+|.+.+|++.+ .+..+++++++.|+.+++.++.++||.|+++.+.|.+.. ..+... |++++.
T Consensus 65 ~~~~lE~~la~leg----------~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~-Gi~v~f 133 (384)
T PRK06434 65 TVQAFEEKYAVLEN----------AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTL-GIHVDY 133 (384)
T ss_pred hHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhc-CcEEEE
Confidence 35788888888875 346788888889999999999999999999988766544 444555 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++..+.+.++. .++|+|++..|+|||+.+.+ +++|.++|++++ +++|.+++.. +...+
T Consensus 134 vd~~~~~~~~l~~--------------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~~p 193 (384)
T PRK06434 134 IDTDRLNSLDFDP--------------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQNP 193 (384)
T ss_pred ECCCChhheeecC--------------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccCCc
Confidence 8876433333221 16889999999999999877 888888888988 4669997532 22222
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc-ccCC-CchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS-SFGL-VSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~-~~~~-vs~~~q~~~~~~L~~~~~~~ 319 (477)
+ ..+..++++|.+|.++-+| .=.|.|++.++.+.+.++.+. .++. .+++..+++..-|+.-
T Consensus 194 ---l---------~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL---- 257 (384)
T PRK06434 194 ---L---------DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL---- 257 (384)
T ss_pred ---h---------hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH----
Confidence 1 1134578899999996434 446777776666655544332 3443 3555444445555442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
..+.++..+....+.+.|+.+
T Consensus 258 ---~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 258 ---GLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcC
Confidence 233334455556677777765
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=146.72 Aligned_cols=294 Identities=12% Similarity=0.114 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc------CCC-CeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA------NPG-DAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~------~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
.+....+|+++.+.. ..+++++++++++|++.++.... ++| ..|+..+.+|++........+|....
T Consensus 77 ~~~~~~la~~l~~~~------~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~ 150 (395)
T PRK03715 77 NEPMAKLAGLLTQHS------CFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGW 150 (395)
T ss_pred CHHHHHHHHHHhhcc------CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCccc
Confidence 577888899887532 24689999999999999998764 123 57888888888765433222243211
Q ss_pred EEeccC-CCCcc----cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 162 PVHCDI-SNNFK----ITREALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 162 ~v~~~~-~~~f~----i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
.....+ ..+|. .|++++++.+++ ++.+|++....+..|... +.+.+++|.++|+++|+++|+||++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG 224 (395)
T PRK03715 151 DTIFAPQVPGFPKAELNDIASVEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTG 224 (395)
T ss_pred ccCCCCCCCCceeeCCchHHHHHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 100000 01111 267888877642 566666664455666654 688899999999999999999999997
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcC
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~ 313 (477)
+.-.+..+. .+.. +..+| +.+|+|.+| .|+.+|.+++.++. ...... ...|+ .++++..++.+.|+
T Consensus 225 ~GRtG~~~a--~~~~---gv~PD----i~t~gK~lg-~G~p~~av~~~~~i-~~~~~~~~~~T~~-g~pl~~aaala~L~ 292 (395)
T PRK03715 225 CGRTGTLFA--YELS---GIEPD----IMTLGKGIG-GGVPLAALLAKAEV-AVFEAGDQGGTYN-GNPLMTAVGVAVIS 292 (395)
T ss_pred CCCCcchhh--Hhhc---CCCCc----eeeehhhhh-CCcceEEEEEcccc-ccccCCCcCCCCC-CCHHHHHHHHHHHH
Confidence 433333221 1111 11333 348899999 78999999986654 222111 12222 34555444444443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhc---CeE
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV---KLN 386 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~---gI~ 386 (477)
-- ++ +...+++++.-+++.+.|++ .++.... .-|+++-+.+..... ..+...+.+. ||.
T Consensus 293 ~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~~~--------~~~~~~~~~~~~~Gi~ 358 (395)
T PRK03715 293 QL---LA--PGFLEGVRARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKDIG--------PQIVEKARDMQPDGLL 358 (395)
T ss_pred HH---Hh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCchH--------HHHHHHHHhccCCCEE
Confidence 21 10 12233444444555555543 3543333 346777787753100 1112222334 999
Q ss_pred EeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 387 VSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+. .+..+|++.... +++++++++++|++++++
T Consensus 359 ~~~~------~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~ 393 (395)
T PRK03715 359 LNAP------RPNLLRFMPALNVTTEEIDQMIAMLRSVLDK 393 (395)
T ss_pred Eeec------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 8643 235799999764 999999999999999865
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-14 Score=146.04 Aligned_cols=156 Identities=20% Similarity=0.281 Sum_probs=115.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH----HHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~v 163 (477)
...|++.+|++.+ . .+.|++++| +.|+.+++.++.++||.|+++...|.+.. ..+... |+++..+
T Consensus 71 ~~~le~~la~l~g--------~-~~~v~fsSG-~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~-Gi~v~~v 139 (437)
T PRK05613 71 VEALENRIASLEG--------G-VHAVAFASG-QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRL-GIEVTFV 139 (437)
T ss_pred HHHHHHHHHHHhC--------C-CeEEEeCCH-HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhc-CeEEEEE
Confidence 5678888888875 1 244555555 58888888888899999999999998764 233445 9998888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+ +. .|++++++++++ ++++|++..|+||+|.+.+ +++|.++|+++|+.+|+|.+++...+ +
T Consensus 140 d-~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~----~ 200 (437)
T PRK05613 140 E-NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL----V 200 (437)
T ss_pred C-CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc----c
Confidence 7 22 168889888764 7889999999999999999 88888999999999999999863211 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS 282 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~ 282 (477)
.+. . .+..+++.|++|.+|-.|--+|.+++
T Consensus 201 ~p~-~--------~GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 201 RPL-E--------LGADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred ChH-H--------hCCCEEEeeccceecCCCcceeEEEE
Confidence 111 1 13457889999999755655555444
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-14 Score=140.03 Aligned_cols=282 Identities=20% Similarity=0.245 Sum_probs=187.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPV 163 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v 163 (477)
-...|.+++|.+-+ .+..+.++++..|+..++.+|.++||.|+++...|.+..+.+.. ..|+++..+
T Consensus 64 T~~~lE~~~a~LEg----------~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 64 TRDALEEALAELEG----------GEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred cHHHHHHHHHHhhC----------CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEE
Confidence 35678888888764 46788889999999999999999999999999999886654432 238888776
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.. +.+++++++.+ +++|+|++..|+||+-.+.+ +.+|+++|+++|+++|+|+.|+.-++-.+
T Consensus 134 d~~-------~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~P-- 196 (396)
T COG0626 134 DPG-------DDEALEAAIKE-----PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQRP-- 196 (396)
T ss_pred CCC-------ChHHHHHHhcc-----cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccCh--
Confidence 632 34556666542 27999999999999999988 88899999999999999999985433322
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHH--HHhcccC-CCchHHHHHHHHhcCChhhHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCG--RKMSSFG-LVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~--~~~~~~~-~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+ ..+..|+++|.+|.+|=.+ .=.|.++++++.+.+.+ ......+ .+++...+++.+-|+.-.
T Consensus 197 -----L------~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~--- 262 (396)
T COG0626 197 -----L------ELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLA--- 262 (396)
T ss_pred -----h------hcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHH---
Confidence 1 2355689999999987222 44566666777776654 2222233 467777777777776633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CC-eEecCC----------------ceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GI-NCLKSN----------------AGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi-~~~~~~----------------~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
-+.++..++...+.+.|++. .+ +++-|. .|-.+.+++... +-..++++
T Consensus 263 ----~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~----------~~~~~f~~ 328 (396)
T COG0626 263 ----LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE----------EAAKKFLD 328 (396)
T ss_pred ----HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh----------HHHHHHHH
Confidence 33445556667777888775 23 233221 333555677643 11233344
Q ss_pred hcCeE---EeCCCCCC----C-----------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 382 DVKLN---VSPGSSFQ----C-----------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 382 ~~gI~---v~pg~~f~----~-----------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.-.+. .+-|.... + -.++.+|++++. |+.+.+++-|+++++.
T Consensus 329 ~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl---Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 329 SLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL---EDVEDLIADLEQALAK 394 (396)
T ss_pred hCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHh
Confidence 33332 22222211 0 125689999995 5667777777777654
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-14 Score=142.78 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=206.3
Q ss_pred CCCCCCCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccc-cccccCCCCCcHHHHHHHHHHHhcccCC
Q 011801 31 FHPTQNPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFK-DIAIFQDYHGLPEFRQAVAKFMGKGRGG 105 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~ 105 (477)
|..+-..+..|||..+.+ .+ +.|.+.+++++..+. +. ....|..+ +-..++|+.+......
T Consensus 49 ~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~----------~~h~~~~~~~~----e~~v~~ae~L~~~~p~ 114 (447)
T COG0160 49 YLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAK----------LNHTHTRDLYY----EPYVELAEKLTALAPG 114 (447)
T ss_pred EEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHH----------hhcccCCcccc----hhHHHHHHHHHHhCCc
Confidence 344455667899977433 33 346666666663211 11 11122222 4444455544432110
Q ss_pred CCccCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhC---------------CcEEEEEeccCC
Q 011801 106 RVTFDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRT---------------GVQIVPVHCDIS 168 (477)
Q Consensus 106 ~~~~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~---------------g~~~~~v~~~~~ 168 (477)
-..+.+++++++++|++.+++.- ......|+...-.|++-....-..+ ++..+|+|....
T Consensus 115 ---~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr 191 (447)
T COG0160 115 ---SGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYR 191 (447)
T ss_pred ---ccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCcccc
Confidence 13567999999999999998763 2334678888888876442221111 133333333222
Q ss_pred CCccc--------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 169 NNFKI--------TREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 169 ~~f~i--------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
+.|.. ..+.++..+........++.++|+.--..-.|.+ .|.+-++++.++|++||+++|+||+..++.-.
T Consensus 192 ~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRT 271 (447)
T COG0160 192 CPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRT 271 (447)
T ss_pred CcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 22322 2333444444433334567777776556777865 56667999999999999999999999987555
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH-HhcccCCCchHHHHHHHHhcCC---h
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR-KMSSFGLVSSQTQYLLASMLSD---D 315 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~-~~~~~~~vs~~~q~~~~~~L~~---~ 315 (477)
+ .+..+.. .+..+| ++ ++||.+| .|+.+|.++..++ +..... ....++..++.+..++.+.|+- .
T Consensus 272 G-~~fa~E~----~gv~PD--iv--t~aK~ig-~G~Pl~avv~r~e-i~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e 340 (447)
T COG0160 272 G-KMFAFEH----FGVEPD--IV--TLAKSLG-GGLPLSAVVGRAE-IMDWPPGGHGGTFGGNPVACAAALAVLDVIEEE 340 (447)
T ss_pred c-cchhhhh----cCCCCC--EE--Eeccccc-CCCceeEEeccHH-hcccCCcccCCCCCcCHHHHHHHHHHHHHHHHc
Confidence 5 3333222 122233 33 8899999 6999999999554 333221 2223334667776766666652 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
++ .+...+.-++++++.+.+.+.....| .-..-|+++-+++...-.. .+.+.-..+...++ ++|+++..+..+
T Consensus 341 ~L-~~~a~~~G~~l~~~L~~l~~~~~~Ig---dVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~-~~Glil~~~G~~ 415 (447)
T COG0160 341 NL-LERAAELGEYLRDRLEELQEKHPLIG---DVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAF-ERGLLLLTCGPH 415 (447)
T ss_pred cH-HHHHHHHHHHHHHHHHHHHhhcCcee---cccccceEEEEEEecCCCCCCCCHHHHHHHHHHHH-HcCCEEeccCCC
Confidence 22 22233333344444333333332111 1123468888888643222 12122224455555 459988765433
Q ss_pred CCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 394 QCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+||..... ++++++.++++|.+++++
T Consensus 416 ----~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 416 ----GNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred ----CcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 46899988764 999999999999999875
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-15 Score=147.34 Aligned_cols=283 Identities=14% Similarity=0.165 Sum_probs=178.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCC-hHHHHHHHHHHhcC---CCCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG-ATGANELIMFCLAN---PGDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G-~t~al~~i~~~l~~---~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
+.+.|+.++++++- -++++|++|.| +|+++++++..|.. +||.|++ .|....+...++.. |+++..+
T Consensus 46 ~~~~r~~l~~l~~~-------~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~-g~~~~~~ 116 (355)
T cd00611 46 VNEAESDLRELLNI-------PDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-GAWSAKAAKEAKRY-GGVVVIV 116 (355)
T ss_pred HHHHHHHHHHHhCC-------CCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHHhc-CCCcEEE
Confidence 46778888888861 14678999988 99999999999987 4554443 33322233355655 8888888
Q ss_pred eccCCCCcccC-HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 HCDISNNFKIT-REALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~-~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+++..+++. + .+..+..+ +.++|+|.+++.+|.||..++ ++++.+|+++++|.+.+ ++..+
T Consensus 117 ~~~~~g~~~-~~~~~~~~~~------~~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs---~g~~~ 178 (355)
T cd00611 117 AAKEEGKYT-KIPDVETWDL------APDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSN---ILSRP 178 (355)
T ss_pred ecccccCCC-CCCCHhhcCC------CCCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEcccc---ccCCC
Confidence 876433331 2 22222222 237899999999999999854 33445899999999997 44333
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH-------------HhcccCCCchHHHHHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR-------------KMSSFGLVSSQTQYLLA 309 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~-------------~~~~~~~vs~~~q~~~~ 309 (477)
..+.+. + +.+.|..|.+|.+| +|+++.+++.+..... ....+++.+....+++.
T Consensus 179 -idv~~~--------~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~ 245 (355)
T cd00611 179 -IDVSKF--------G--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMG 245 (355)
T ss_pred -CCHHHh--------C--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHH
Confidence 343322 2 34566899999666 8888887665533111 00113444444555555
Q ss_pred HhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhC-CCe-Ee-c--CCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 310 SMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQV-GIN-CL-K--SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 310 ~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~-~--~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+.|+ ++.+ -+++..++.++..+++.+.|+++ |+. .. . ...+..+.+.++.. .+. .++.. ++.+
T Consensus 246 aal~---~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~----~l~--~~~~~-~~~r 315 (355)
T cd00611 246 LVLK---WLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE----ELE--KEFLK-EAEA 315 (355)
T ss_pred HHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh----hhh--HHHHH-HHHH
Confidence 5553 2222 25677788888999999999998 752 21 1 12334455665542 111 12223 3445
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
.|+.+.+|.. ..+.||+|+... ++++++.+++.|+++.
T Consensus 316 ~G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 316 AGMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred CCCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 6997665543 247899999775 9999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-14 Score=146.21 Aligned_cols=344 Identities=15% Similarity=0.108 Sum_probs=191.9
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+++.-+. .... .+..+ ..+.+..+|+.+.+... -
T Consensus 38 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----------~~~~-~~~~~--~~~~~~~la~~l~~~~p----~ 100 (423)
T PRK05964 38 LADGRELIDAISSWWVATHGHNHPYIDQAIREQLDR----------LDHV-IFAGF--THEPAERLAQRLVALTP----G 100 (423)
T ss_pred eCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhh----------CCCc-ccccc--CCHHHHHHHHHHHHhCC----C
Confidence 4455678888544 4444 346666666553110 0000 11001 12445566666654321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C-CC-CeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N-PG-DAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISN 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~-~G-d~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~ 169 (477)
..+++++++++++|++.+++... + +| .+|+...-+|++........++- .+..++....+
T Consensus 101 ~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d 180 (423)
T PRK05964 101 GLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDG 180 (423)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcch
Confidence 23689999999999999887642 1 23 57888888888754322111111 11222222111
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITN-PSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
....+++++++.+++ .+.++.+|++.. .+...|... +.+.+++|.++|++||+++|+||++.++...+..+..
T Consensus 181 ~~~~~~~~l~~~l~~---~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~-- 255 (423)
T PRK05964 181 YEQATLDALEALLEK---HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFAC-- 255 (423)
T ss_pred hHHHHHHHHHHHHHh---CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHH--
Confidence 001126677776653 234677766643 366778655 8899999999999999999999999875443322111
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cc--c---CCCchHHHHHHHHhcC---Chh
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SS--F---GLVSSQTQYLLASMLS---DDE 316 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~--~---~~vs~~~q~~~~~~L~---~~~ 316 (477)
+.. +..++ +.++||.++-+++++|++++++ .+.+.+... .. + ...++++..++.+.|+ ..+
T Consensus 256 ~~~---~v~pD----i~~~~K~l~gG~~p~~av~~~~-~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~ 327 (423)
T PRK05964 256 EQA---GVSPD----IMCLSKGLTGGYLPLAATLCTA-EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEP 327 (423)
T ss_pred Hhc---CCCCC----eeeeehhhhcCcccceEEEEcH-HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 111 11223 3378999983338999988854 444443211 01 1 1245566555555554 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
+ .+++.+.-+.+.+.|+++ ..... ....|+++.+.+..... . .....++..++ ++||.+.+..
T Consensus 328 ~--------~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~--~-~~~~~l~~~l~-~~Gv~v~~~~-- 393 (423)
T PRK05964 328 V--------LERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL--E-RDGPALRAFAL-ERGVLLRPLG-- 393 (423)
T ss_pred H--------HHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc--h-hHHHHHHHHHH-HCCeEEEecC--
Confidence 2 223333334444444443 22211 12345676677753210 0 11224555555 5699998641
Q ss_pred CCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 394 QCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|++.... ++++++++++++++++++
T Consensus 394 -----~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 394 -----NTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred -----CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 3699998753 999999999999999865
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-14 Score=144.03 Aligned_cols=358 Identities=12% Similarity=0.029 Sum_probs=195.3
Q ss_pred CCCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCC
Q 011801 31 FHPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGR 106 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~ 106 (477)
|..+.+.+..||+..+ .+.+ +.+.+.+.+++.-+ .........-..+.+.++|+.+.+....
T Consensus 32 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~-------------~~~~~~~~~~~~~~~~~lae~L~~~~p~- 97 (442)
T TIGR00709 32 WVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQ-------------SGLPLHTLDLTTPLKDAFIEALLNIIPK- 97 (442)
T ss_pred EEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHH-------------hccCccccccCcHHHHHHHHHHHHhCCC-
Confidence 3334556678888544 3333 34666666665311 1000000001135555666666543210
Q ss_pred CccCCCc-EEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCCc
Q 011801 107 VTFDPDR-IVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNNF 171 (477)
Q Consensus 107 ~~~~~~~-i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~f 171 (477)
.....+ +++++++++|++.+++... ....+|+...-+|++....+...+|. .+..++.. +.+
T Consensus 98 -~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~--~~~ 174 (442)
T TIGR00709 98 -RKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP--HEY 174 (442)
T ss_pred -cCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC--ccc
Confidence 001124 4556899999999887632 22357888888898876443322221 11222221 111
Q ss_pred cc--------CHHHHHHHHHHHH----HhCCCeeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 172 KI--------TREALEAAYERAQ----EASINIKGLIITNPS-NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 172 ~i--------~~~~l~~~~~~~~----~~~~~~k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
.. +.+.+.+.+++.. ....++.+|++.... |+.....+++.+++|.++|+++|+++|.||++.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 254 (442)
T TIGR00709 175 RCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGR 254 (442)
T ss_pred cccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence 11 1222222222211 112367777776544 4444568999999999999999999999999998655
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-hcccCCCchHHHHHHHHhcCChhh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-MSSFGLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-~~~~~~vs~~~q~~~~~~L~~~~~ 317 (477)
.+.. ...... +..+| ++ ++||.+| .|+++|+++++++ +...... ..+....+++++.++.+.|+.-+
T Consensus 255 tG~~-~a~~~~----gv~PD--iv--~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~- 322 (442)
T TIGR00709 255 SGTM-FAFEHA----GIEPD--FV--VMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWK- 322 (442)
T ss_pred CCch-hHHHHc----CCCCc--EE--EEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHH-
Confidence 5532 232221 11334 33 3799999 5999999999665 4322111 11112367788888777774311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhhc------c--CchHHHHHHHHHHHhcCe
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLKE------K--TLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~~------~--~~~~e~~l~~~ll~~~gI 385 (477)
+. ...++++++.++|.+.|++ .++...-..-|+++.+.+...... . .......+...++ ++||
T Consensus 323 -~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gv 397 (442)
T TIGR00709 323 -DD---NLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACF-ENGL 397 (442)
T ss_pred -hc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHH-HCCe
Confidence 11 1122333444444444443 232222234567888877532110 0 0011123444444 5699
Q ss_pred EEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++.+... ..+.+|+..+.. ++++++++++++.+++.+
T Consensus 398 l~~~~~~----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 398 LLETGGR----EGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred EEeecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9976432 235799988764 999999999999999875
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-14 Score=142.71 Aligned_cols=268 Identities=16% Similarity=0.121 Sum_probs=175.9
Q ss_pred CcEEEeCC-hHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCc--ccCHHHHHHHHHHHH
Q 011801 112 DRIVMGGG-ATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNF--KITREALEAAYERAQ 186 (477)
Q Consensus 112 ~~i~~t~G-~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f--~i~~~~l~~~~~~~~ 186 (477)
.+|+++.| +|+|++.++..+..+||++++..-...+ +...++.. |. +..+..+...+| .+++++++.
T Consensus 56 ~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~------ 127 (349)
T TIGR01364 56 YEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKY-GV-VNVVASGKEGNYTKIPDPSTWEI------ 127 (349)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CC-cEEEeccccCCCCCCCCHHhcCC------
Confidence 46878766 9999999999999999998877655433 33445555 88 666665422212 345554442
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
+.++++|.+++..|.||...+ ++++.+++++++|.+.+ +...+ ..+.+ .+ +++.|.
T Consensus 128 --~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss---~g~~~-id~~~--------~d--~~~~ss 183 (349)
T TIGR01364 128 --SEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSN---ILSRP-IDVSK--------FG--LIYAGA 183 (349)
T ss_pred --CCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEcccc---ccCcc-CCHHH--------cc--EEEEec
Confidence 237899999999999999876 45556899999999997 44433 33332 13 778899
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHH-------------HhcccCCCchHHHHHHHHhcCChhhHHH-HHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGR-------------KMSSFGLVSSQTQYLLASMLSDDEFVDN-FLVETSKRLAKR 332 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~-------------~~~~~~~vs~~~q~~~~~~L~~~~~~~~-~~~~~~~~l~~r 332 (477)
.|.+|.|| +|+++.+++.+..... ....+++.+...-+++.++|+--. +. -+++..++.++.
T Consensus 184 qK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~--~~gG~e~i~~r~~~l 259 (349)
T TIGR01364 184 QKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLK--EQGGVKAIEKRNQAK 259 (349)
T ss_pred ccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 99999776 8888887765543211 011233445455555555553211 11 267778888889
Q ss_pred HHHHHHHHhhC-CCeEe-cC---CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc
Q 011801 333 HHNFTKGLEQV-GINCL-KS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN 407 (477)
Q Consensus 333 ~~~l~~~L~~~-gi~~~-~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~ 407 (477)
.+++.+.|+++ |+... .. ..+..+.+.++.. .. ..++.. .+.+.|+.+.+|.. ..+.||+|+..
T Consensus 260 ~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~----~~--~~~~~~-~~~~~Gi~~~~~~~----~~g~vRvS~~~ 328 (349)
T TIGR01364 260 AQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE----EL--EKRFLK-EAEERGLVSLKGHR----SVGGMRASIYN 328 (349)
T ss_pred HHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh----hH--hHHHHH-HHHHCCCcccCCcc----ccCeeEEECcC
Confidence 99999999998 55333 11 2223455555532 11 113334 44567997777644 24689999976
Q ss_pred C-CHHHHHHHHHHHHHHHhh
Q 011801 408 M-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 408 ~-~~e~l~~~l~~l~~~~~~ 426 (477)
. +.|+++.+++.|++++++
T Consensus 329 ~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 329 AMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 5 899999999999998765
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-14 Score=146.51 Aligned_cols=353 Identities=12% Similarity=0.061 Sum_probs=192.8
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+++.-+ .+..+.......+....+|+.+.+... -
T Consensus 48 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p----~ 110 (460)
T PRK06541 48 DDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAG-------------TLAFFPLWSYAHPPAIELAERLAALAP----G 110 (460)
T ss_pred eCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHh-------------hCcCccccccCCHHHHHHHHHHHHhCC----C
Confidence 4445667887544 3344 34666666655311 111111111112444455555543321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N-P-GDAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISN 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~-~-Gd~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~ 169 (477)
+.+++++++++++|++.+++... + + ..+|+...-+|++....+...+|.. +..++....-
T Consensus 111 ~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~ 190 (460)
T PRK06541 111 DLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFY 190 (460)
T ss_pred CcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccc
Confidence 23689999999999999887532 1 1 3678888888877653322111211 1222221100
Q ss_pred ---CcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCCC-HHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 170 ---NFKIT--------REALEAAYERAQEASINIKGLIITNP-SNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 170 ---~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
.|.-+ ++.+++.+++. ...++. .++..| .++.|.+.+ .+.+++|.++|+++|+++|+||++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~A-avi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGf 267 (460)
T PRK06541 191 RAPELGDDPEAFGRWAADRIEEAIEFE--GPDTVA-AVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAF 267 (460)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhc--CCCCEE-EEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 01112 24455555421 112444 455667 789998765 888999999999999999999999765
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHHhccc-----CCCchHHHHHHHH
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRKMSSF-----GLVSSQTQYLLAS 310 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~~~~~-----~~vs~~~q~~~~~ 310 (477)
.-.+..+ . .+..+..+| ++ +|||.+| .|+ ++|+++++++...........+ ...++++..++.+
T Consensus 268 GR~G~~~-a----~~~~gv~PD--iv--t~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala 337 (460)
T PRK06541 268 GRLGEMF-G----CERFGYVPD--II--TCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALA 337 (460)
T ss_pred CcCchhh-h----hhhcCCCCC--EE--Eeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHH
Confidence 2222221 1 111122334 22 6899999 897 9999999665543332211111 1134444444444
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEecCCceEEEEeeccchhhc-cCch-----HH--HHHHHHH
Q 011801 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLKSNAGLFFWMDLRHLLKE-KTLE-----GE--IALWRTI 379 (477)
Q Consensus 311 ~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~~~~g~~~~~~l~~~~~~-~~~~-----~e--~~l~~~l 379 (477)
.|+-- ++ ....++++++.++|.+.|+++ ++......-|+++-+.+...... ..+. .. ..++..+
T Consensus 338 ~l~~l---~~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l 412 (460)
T PRK06541 338 NLDIF---ER--EGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPAL 412 (460)
T ss_pred HHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHH
Confidence 44321 10 123345566666677777654 22111223456777776431110 0010 00 1344555
Q ss_pred HHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 380 VNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+ +.||.+.+.. .+...+|++.... +++++++++++|.+++++
T Consensus 413 ~-~~Gi~~~~~~----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 413 F-EAGLYCRADD----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred H-hCCeEEEecC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 5699998731 1246799999754 999999999999999865
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-14 Score=143.08 Aligned_cols=172 Identities=23% Similarity=0.347 Sum_probs=127.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
..+|++++++|++ ..+++.++++|.|+.+++.++ .++||.|++|.-+|+.....+.+. |++++.++++
T Consensus 27 ~~~fE~~~a~~~g----------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~-G~~pv~~Di~ 95 (363)
T PF01041_consen 27 VEEFEKEFAEYFG----------VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWA-GAEPVFVDID 95 (363)
T ss_dssp HHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHT-T-EEEEE-BE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHh-ccEEEEEecc
Confidence 6899999999997 468999999999999999998 478999999999999999998887 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~~s 245 (477)
+ ++|.+|++++++++.+ ++|+|+++ +.-|...+ +.+|.++|+++|+.||+|.+.+-.. +.+. .
T Consensus 96 ~-~~~~id~~~~~~~i~~------~t~ai~~~---h~~G~~~d---~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~---~ 159 (363)
T PF01041_consen 96 P-ETLNIDPEALEKAITP------KTKAILVV---HLFGNPAD---MDAIRAIARKHGIPLIEDAAQAFGARYKGR---P 159 (363)
T ss_dssp T-TTSSB-HHHHHHHHHT------TEEEEEEE----GGGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTE---E
T ss_pred C-CcCCcCHHHHHHHhcc------CccEEEEe---cCCCCccc---HHHHHHHHHHcCCcEEEccccccCceeCCE---e
Confidence 5 5799999999999976 88999987 55777776 8888999999999999999998311 1111 1
Q ss_pred HHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhccc
Q 011801 246 VAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF 297 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~ 297 (477)
+. ..+ .+.+.|| +|.+. ..--|+|+++++.+.+.++.++..
T Consensus 160 ----~G----~~g-d~~~fSf~~~K~i~--~geGG~v~~~~~~~~~~~~~~~~~ 202 (363)
T PF01041_consen 160 ----VG----SFG-DIAIFSFHPTKIIT--TGEGGAVVTNDPELAERARALRNH 202 (363)
T ss_dssp ----TT----SSS-SEEEEESSTTSSS---SSS-EEEEESTHHHHHHHHHHTBT
T ss_pred ----cc----CCC-CceEecCCCCCCCc--CCCCeeEEecHHHHHHHhhhhhcc
Confidence 11 112 3556677 68884 334599999888888777765443
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-13 Score=138.26 Aligned_cols=361 Identities=17% Similarity=0.205 Sum_probs=230.6
Q ss_pred hhcCCCCCCCCCCcccccccccccc-ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhccc
Q 011801 25 AFDRNPFHPTQNPGGVIQLGLAENQ-LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGR 103 (477)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~l~~~~n~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~ 103 (477)
+-.-|+|.-.. .+=+|||-++.-. .+.+...+++..- ...|........|.+.+++.++
T Consensus 29 ~agyN~f~l~s-~dV~IDLrSDTgT~apS~~m~aAM~~G----------------DD~Y~gdpSv~~Lee~vael~G--- 88 (467)
T TIGR02617 29 KAGMNPFLLDS-EDVFIDLLTDSGTGAVTQSMQAAMMRG----------------DEAYSGSRSYYALAESVKNIFG--- 88 (467)
T ss_pred HcCCCcccCCC-CCeEEECccCCCCCCCCHHHHHHHHcC----------------CcccccCchHHHHHHHHHHHhC---
Confidence 33445665533 3335899877665 3666666655441 2357777778999999999997
Q ss_pred CCCCccCCCcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCC-------Cccc-hHHHHhhhCCcEEEEEecc--------
Q 011801 104 GGRVTFDPDRIVMGGGATGANELIMFCLAN-PGDAFLVPSP-------YYAA-FDRDLSWRTGVQIVPVHCD-------- 166 (477)
Q Consensus 104 g~~~~~~~~~i~~t~G~t~al~~i~~~l~~-~Gd~vlv~~P-------~y~~-~~~~~~~~~g~~~~~v~~~-------- 166 (477)
.+.++.|..++++..+++..+++ |||.+++..+ ++.. ....+... |+.+..++.+
T Consensus 89 -------~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~-G~~~~~l~~~ea~~~~~~ 160 (467)
T TIGR02617 89 -------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN-GCTARNVYTKEAFDTGVR 160 (467)
T ss_pred -------CceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHc-CceeecccchhhcccccC
Confidence 35688888889999999999988 7887775543 2221 12234444 8888776432
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCeEEEeccccccc--cc-----
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSN-PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT--VF----- 238 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~--~~----- 238 (477)
......+|+++|++++++.... ++..+..+--+| --|+.+|.+.++++.++|++||+.++.|.+...- +|
T Consensus 161 ~~fkG~~dl~~le~~I~~~g~~--~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE 238 (467)
T TIGR02617 161 YDFKGNFDLEGLERGIEEVGPN--NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQRE 238 (467)
T ss_pred CCCCCCcCHHHHHHHHhhcCCC--CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcc
Confidence 1112468999999999853111 232222211123 3589999999999999999999999999876310 11
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCH---HHHHHHHH-------hcccCCCchHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFND---TVVNCGRK-------MSSFGLVSSQTQYL 307 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~---~i~~~~~~-------~~~~~~vs~~~q~~ 307 (477)
....-.++.++..+.--..| .+.-|+||.+|.| | |+++++++ .+....+. +.+|+..+.-...+
T Consensus 239 ~~a~~~si~eI~rE~~~~aD--svt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea 313 (467)
T TIGR02617 239 AEYKNWSIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMER 313 (467)
T ss_pred hhhcCCCHHHHHHHhhccCC--EEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHH
Confidence 01122666666533210223 4556999999887 5 67777777 33333322 24566677666666
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh---hccCchHHHHHHHHHHHhcC
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL---KEKTLEGEIALWRTIVNDVK 384 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~---~~~~~~~e~~l~~~ll~~~g 384 (477)
++.-|.+. ..+.++..+ +.+ .++|.+.|.+.|+++.. .||.-++++....+ ....|.. ..|...|..+.|
T Consensus 314 ~a~Gl~e~-~~~~yl~~r---i~q-v~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa-~al~~~ly~~~G 386 (467)
T TIGR02617 314 LAVGLYDG-MNLDWLAYR---INQ-VQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPA-HALACELYKVAG 386 (467)
T ss_pred HHhhhhhc-ccHHHHHHH---HHH-HHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcH-HHHHHHHHHHcC
Confidence 66556543 113444433 332 37889999999999888 78888888765532 2222322 357777888889
Q ss_pred eEEeC-CCCCCCC--------C--CCEEEEEecc--CCHHHHHHHHHHHHHHHhhh
Q 011801 385 LNVSP-GSSFQCT--------E--PGWFRVCFAN--MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 385 I~v~p-g~~f~~~--------~--~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~ 427 (477)
|.-.- |+..... . -..+|+++.. .|.++++...++|..+.++.
T Consensus 387 iR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~ 442 (467)
T TIGR02617 387 IRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_pred cceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhh
Confidence 97333 3331110 1 1479999966 39999999999999999873
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-14 Score=140.28 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=187.7
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcE--EEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRI--VMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i--~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
...++.+.+.+++.+..| .+++++ ++|+|+|+++..++.+.. .++..|+++.-.+..+...++.. |.++..
T Consensus 63 ~a~~~e~~v~~~ia~llg----~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l-g~~~~~ 137 (374)
T PLN03032 63 HSRQFEVGVLDWFARLWE----LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMEAVK 137 (374)
T ss_pred cHHHHHHHHHHHHHHHhC----CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc-CCCCeE
Confidence 346777777777777665 567776 999999999998887643 34567888888888888888877 888888
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-----eEEEecccccccc
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN-----IHLVCDEIYAATV 237 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~-----~~lI~De~y~~~~ 237 (477)
||++. ++.+|+++|++++++. ..++.+|+++..+|+||.+-+ +++|.++|+++| +++++|.+|++..
T Consensus 138 V~~d~--~g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~ 209 (374)
T PLN03032 138 VPTLP--SGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLM 209 (374)
T ss_pred eeeCC--CCcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhh
Confidence 88864 5589999999999752 225667888889999999988 778888888886 5999999998642
Q ss_pred c--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC-------CCc-----hH
Q 011801 238 F--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG-------LVS-----SQ 303 (477)
Q Consensus 238 ~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~-------~vs-----~~ 303 (477)
. ... .+...+ ......+.-|.+|.+| ....+|.++..++.+.. +.....|. ..| .+
T Consensus 210 ~p~~~~--~~~~~~------~~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~-~~~~~~Yl~~~d~ti~gSR~g~~~l 279 (374)
T PLN03032 210 MPFVSR--APEVTF------RKPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKA-LSQNVEYLNSRDATIMGSRNGHAPL 279 (374)
T ss_pred hhccCC--CcccCC------CcCCcEEEECcccccC-CCcCeEEEEEEchhhHh-hccCCcccCCCCCcccCCCchHHHH
Confidence 1 111 000011 1123345679999887 55679999997654432 21111111 011 22
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
..++....+.... +.+..++..+..+++.+.|++.++++....-.+.+.++-+. .+ .+. .
T Consensus 280 ~~w~~l~~~G~~g-----~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~~--------~~-----~~~--~ 339 (374)
T PLN03032 280 YLWYTLRRKGYRG-----IKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERPM--------DE-----AFI--K 339 (374)
T ss_pred HHHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCCC--------cH-----hHh--h
Confidence 3333333333322 35566677778888999999888876543333455554441 01 122 2
Q ss_pred CeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAA 422 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~ 422 (477)
|..+.+- .+++|+++.. .+.+.++++++.|++
T Consensus 340 ~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 340 KWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred eeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 5555421 3479999965 477888888887764
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-13 Score=140.86 Aligned_cols=309 Identities=13% Similarity=0.092 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCc---------
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGV--------- 158 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~--------- 158 (477)
+....+|+.+.+..+. -..+++++++++++|++.+++.- .....+|+...-+|++....+-..+|.
T Consensus 97 ~~~~~lAe~L~~~~p~---~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~ 173 (441)
T PRK05769 97 EPAVELAERLVEIAPG---GFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFF 173 (441)
T ss_pred HHHHHHHHHHHHhCCC---CCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCC
Confidence 4455666666543210 01368999999999999988753 122367888888888765332211111
Q ss_pred ----EEEEEeccCC--CCcc-cC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHh
Q 011801 159 ----QIVPVHCDIS--NNFK-IT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFIND 222 (477)
Q Consensus 159 ----~~~~v~~~~~--~~f~-i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~ 222 (477)
.+..++.... ..|. -+ .+.+++.+.+......++.+|++.--..-.|.. .+.+.+++|.++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~ 253 (441)
T PRK05769 174 PLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK 253 (441)
T ss_pred CCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH
Confidence 1222332110 0011 01 122333221110113367766655334556764 467789999999999
Q ss_pred cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCC
Q 011801 223 KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLV 300 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~v 300 (477)
+|+++|+||++.++...+..+ ..... +..+| ++ +|||.+| .|+++|+++++++. ....... ..|+ .
T Consensus 254 ~g~lli~DEv~tG~gr~G~~~-a~~~~----gv~pD--iv--t~~K~l~-~G~p~gav~~~~~i-~~~~~~~~~~T~~-g 321 (441)
T PRK05769 254 YGILLIDDEVQTGMGRTGKMF-AIEHF----GVEPD--II--TLAKAIA-GGLPLGAVIGRAEL-MFLPPGSHANTFG-G 321 (441)
T ss_pred cCCEEEEechhhCCCccccee-hhhcc----CCCCC--EE--EEccccc-CCcccEEEEEehhh-hhcCCCCCCCCCC-c
Confidence 999999999998754444322 11111 11333 22 6899999 89999999986554 3332211 2232 4
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+++++.++.+.|+-- ++ ...++++++-++|.+.|+++ ++......-|+++-+.+..............++
T Consensus 322 ~p~~~aaa~a~L~~l---~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~ 395 (441)
T PRK05769 322 NPVAAAAALATLEEL---EE---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVL 395 (441)
T ss_pred CHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHH
Confidence 666776666666432 21 23344455555566656543 332222334677777774321111111112345
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.++ +.||.+.+. +...+|++... +++++++++++++.+++.+
T Consensus 396 ~~~~-~~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 396 YEAF-KRGLLLLGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred HHHH-hCCcEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555 469998753 23579999875 4999999999999999864
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-14 Score=143.04 Aligned_cols=288 Identities=13% Similarity=0.069 Sum_probs=179.2
Q ss_pred cHHHHHHHHHHHhcccCCCCcc-CCCcEEEeC-ChHHHHHHHHHHhcCC-CCeEEEcCCCccchHH-HH-hhhCCc-EEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTF-DPDRIVMGG-GATGANELIMFCLANP-GDAFLVPSPYYAAFDR-DL-SWRTGV-QIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~-~~~~i~~t~-G~t~al~~i~~~l~~~-Gd~vlv~~P~y~~~~~-~~-~~~~g~-~~~ 161 (477)
+.+.|+.++++++ . ++++|+++. ++|++++.++..|.++ ++.|++ .-.|+.-.. .+ +.. |. ++.
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~-g~~~v~ 119 (378)
T PRK03080 50 LKRVIEGTRELLS--------LPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQL-KLEDPR 119 (378)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhc-CCCCce
Confidence 4677778888876 3 345788875 8999999999998875 444444 434544222 12 334 88 877
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+. +..+|+++++ .++.|.+++.+|.||..++ +++|++ +++|+++|+|.+.+ ++..
T Consensus 120 ~~~~~~--g~~~d~~~i~-----------~~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs---~G~~ 178 (378)
T PRK03080 120 VLEADY--GSLPDLSAVD-----------FDRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSA---AFAL 178 (378)
T ss_pred EeccCC--CCCCCHhhcC-----------CCCCEEEEecCCccceecc---chhhcc--ccCCCeEEEecccc---cccC
Confidence 777653 3356666532 2456889999999999999 666666 78899999999987 4443
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh----------------------c--cc
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM----------------------S--SF 297 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~----------------------~--~~ 297 (477)
+ ..+.+ ..+++.|..|.++. ...+|+++.+++.+....... . .+
T Consensus 179 p-idv~~----------iD~~~~s~~K~l~~-P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 246 (378)
T PRK03080 179 P-LDWSK----------LDVYTFSWQKVLGG-EGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTI 246 (378)
T ss_pred C-CCHHH----------CcEEEEehhhhCCC-CCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcc
Confidence 3 33332 23778899999863 234899999766554321110 0 00
Q ss_pred CCCchHHHHHHHHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhCC-CeEecC----CceEEEEeeccchhhccCch
Q 011801 298 GLVSSQTQYLLASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQVG-INCLKS----NAGLFFWMDLRHLLKEKTLE 370 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~----~~g~~~~~~l~~~~~~~~~~ 370 (477)
++.+...-.++.+.|+ ++.+ -+++..++.++..+++.+.|++.+ +..... .++..+.+.+++. + ....
T Consensus 247 ~tp~i~~i~~l~~al~---~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~-~-~~~~ 321 (378)
T PRK03080 247 NTPSMLTVEDYLDQLD---WANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA-Q-AAVD 321 (378)
T ss_pred cCchHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc-h-HHHH
Confidence 1112122222222222 2122 245666777788888888888885 454421 1223445556540 0 0011
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 371 ~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
.++...++++ |+.++.|... ..++.+|+|+... ++++++.+++.|++++++.+
T Consensus 322 --~~~~~~l~~~-~i~v~~g~~~--~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 322 --AAAVAKLLRE-NGAVDIEPYR--DAPNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred --HHHHHHHHHc-CCeecccccc--CCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1355566655 8888876432 2357899999765 89999999999999887644
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-13 Score=138.70 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=164.9
Q ss_pred CcEEEeCChHHHHHHHHHHhc-CCC-CeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC--CCcc-c
Q 011801 112 DRIVMGGGATGANELIMFCLA-NPG-DAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS--NNFK-I 173 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~-~~G-d~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~~f~-i 173 (477)
++|++++++++|++.+++.-. -.| ..|+...-+|++.....-..++. .++.++.... ..+. .
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP 183 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 589999999999999987531 123 56888888887764322111121 1222332110 0011 0
Q ss_pred CH-------HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 174 TR-------EALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 174 ~~-------~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+. +++++.+++.. ...++.+|++.......|.+ .+.+.+++|.++|+++|+++|+||++.++...+..+ .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-a 261 (445)
T PRK08593 184 DANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-S 261 (445)
T ss_pred cHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-H
Confidence 11 22333332110 12367777776556677876 688889999999999999999999998753333211 1
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCChhhHHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
.+. .+..+| +-+++|.+| .|+++|+++++++ +.+.+... .+++ .++++..++.+.|+--+ ++
T Consensus 262 -~~~---~gv~pD----i~t~gK~l~-~G~p~gav~~~~~-i~~~~~~~~~~~T~~-~~pl~~aaa~a~l~~l~--~~-- 326 (445)
T PRK08593 262 -ISH---FNITPD----LMSFGKSLA-GGMPMSAIVGRKE-IMESLEAPAHLFTTG-ANPVSCAAALATIDMIE--DE-- 326 (445)
T ss_pred -HHh---cCCCCC----Eeeeccccc-CCcccEEEEEcHH-HHhhhccCCCCCCCC-CCHHHHHHHHHHHHHHH--hc--
Confidence 111 111333 338899998 8899999999654 44433211 1222 45666665555554211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchh--hccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 323 VETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLL--KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~--~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
+..+++++.-+++.+.|++ .++...-..-|+++.+.+.... ..........++..+++ +||.+.+.
T Consensus 327 -~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~------ 398 (445)
T PRK08593 327 -SLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAV------ 398 (445)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEecc------
Confidence 1122333333444444433 3332222345667767664211 11111112345556554 69998653
Q ss_pred CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 397 EPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 397 ~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
....+|++.+.. ++++++.+++++.+++++.
T Consensus 399 ~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 399 AGNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 135799988764 9999999999999999764
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=139.72 Aligned_cols=349 Identities=15% Similarity=0.126 Sum_probs=217.4
Q ss_pred ccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC
Q 011801 40 VIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG 119 (477)
Q Consensus 40 ~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G 119 (477)
.|.|=..||-.++...+..-.... ..-.||.. .-..|+...-..++.+...+...+.+| .+-.+|-..+|
T Consensus 28 ~ieLIASEN~~S~aV~~A~gS~lt---nKYAEGyP---gkRyYgGce~VD~vE~laierak~LFg----a~~anVQPhSG 97 (413)
T COG0112 28 HIELIASENFTSPAVMEAQGSDLT---NKYAEGYP---GKRYYGGCEYVDEVEELAIERAKKLFG----AEYANVQPHSG 97 (413)
T ss_pred ceeeeeccccCCHHHHHHHhhhhh---hccccCCC---CccccCCCeeHHHHHHHHHHHHHHHhC----CCccccCCCCc
Confidence 467767777666543332111100 00023311 122344444455666666666776666 45567777777
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH-hh-hCC--cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 120 ATGANELIMFCLANPGDAFLVPSPYYAAFDRDL-SW-RTG--VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 120 ~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~-~~-~~g--~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+ +|+..++.+|++|||+|+-.+-.+.++..-- .. ..| .+.++++++. ++..+|.|++++..++. ++|+|
T Consensus 98 s-~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~-et~~IDyD~~~k~a~e~-----kPK~i 170 (413)
T COG0112 98 S-QANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDP-ETGLIDYDEVEKLAKEV-----KPKLI 170 (413)
T ss_pred h-HHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEeccccc-ccCccCHHHHHHHHHHh-----CCCEE
Confidence 5 5899999999999999999988887765322 11 113 3667777775 35689999999988876 89977
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+..... .-..++ ++++.++|.+-|.++++|-++....-.+..+.+. .+...++.+|.+|+| +|-
T Consensus 171 i~G~Sa--Y~r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P---------~~~AdvVTtTTHKTl--rGP 234 (413)
T COG0112 171 IAGGSA--YSRPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNP---------LPHADVVTTTTHKTL--RGP 234 (413)
T ss_pred EECccc--cccccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCC---------CCccceEeCCcccCC--CCC
Confidence 654211 112334 7777778889999999999985432222222221 122346788999998 899
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHH-HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc-e
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYL-LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA-G 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~-~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~-g 353 (477)
|-|.|++.++.+.+.+.+.-.++..+.+..+. ++....-.+.++--+++..+++.++.+.|.+.|.+.|+++..... +
T Consensus 235 rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdn 314 (413)
T COG0112 235 RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDN 314 (413)
T ss_pred CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccc
Confidence 99999997767777666544444444443332 222222222112223556677788889999999999999876322 2
Q ss_pred EEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAF 423 (477)
Q Consensus 354 ~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~ 423 (477)
-.+.++++. .+.. .....+|.+.||.+. |...-.+-.+..+||+... +.++++++..+-|.++
T Consensus 315 Hl~lVDl~~~~~~G-------k~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~v 387 (413)
T COG0112 315 HLVLVDLRSKGLTG-------KKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADV 387 (413)
T ss_pred eEEEEEcccCCCCH-------HHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHH
Confidence 356688873 1111 234567777888763 3321112234569998754 3578999999999999
Q ss_pred Hhhhh
Q 011801 424 VQQDK 428 (477)
Q Consensus 424 ~~~~~ 428 (477)
+...+
T Consensus 388 l~~~~ 392 (413)
T COG0112 388 LDGLK 392 (413)
T ss_pred Hhccc
Confidence 97644
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-16 Score=150.10 Aligned_cols=188 Identities=20% Similarity=0.297 Sum_probs=135.4
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH--HHhhhCCc
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR--DLSWRTGV 158 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~--~~~~~~g~ 158 (477)
.|.......++++.+++.++ .+..+++.++|.|+.+++.+++.|++.|++..+++..+.+ ......|.
T Consensus 24 ~Yg~D~~~~~l~~~i~~l~g----------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~ 93 (290)
T PF01212_consen 24 AYGEDPTTARLEERIAELFG----------KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGA 93 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTC
T ss_pred ccCCChhHHHHHHHHHHHcC----------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCc
Confidence 58777778889999999887 3566789999999999999999999999999998654332 23334599
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCC-cccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP-LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NP-tG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
++++++.+. +.++|+++|+++++....+..++++|.+++|+|- -|++++.+++++|.++|+++|+.++.|.+.....
T Consensus 94 ~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a 171 (290)
T PF01212_consen 94 KLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANA 171 (290)
T ss_dssp EEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHH
T ss_pred EEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHh
Confidence 999999653 2479999999999876445568999999999987 4899999999999999999999999999874211
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEE-EeCCHHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIV-YSFNDTVVNC 290 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i-~~~~~~i~~~ 290 (477)
.. ..-.++.++.. ..| .+..|++|.+|+++ |.+ +++++.+.+.
T Consensus 172 ~~-~~~~~~~e~~~----~~D--~v~~~~tK~~g~~~---Gavl~~~~~~i~~~ 215 (290)
T PF01212_consen 172 AA-ALGVSLAEIAA----GAD--SVSFGGTKNGGAPG---GAVLAGNKEFIAKA 215 (290)
T ss_dssp HC-HHHHHHHHHHT----TSS--EEEEETTSTT-SSS---EEEEEESHHHHHHH
T ss_pred hh-cccccHHHHhh----hCC--EEEEEEEccccccc---ceEEEechHHHHHH
Confidence 10 11134444433 223 45569999998876 555 4544434443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-13 Score=139.50 Aligned_cols=301 Identities=15% Similarity=0.116 Sum_probs=189.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCC----CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh--------h
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDP----DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS--------W 154 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~----~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~--------~ 154 (477)
...++.....+...+.++ .++ .+|..- +++.|+..++.+|++|||+|+..+..+++...... .
T Consensus 191 ~iD~iE~la~era~~lF~----~~~~~~gaNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs 265 (586)
T PLN02271 191 YIDQIERLCCERALAAFG----LDSEKWGVNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVS 265 (586)
T ss_pred hHHHHHHHHHHHHHHHhC----Ccccccccceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccc
Confidence 344555444555555544 333 456666 45668999999999999999999888877654211 1
Q ss_pred hCCcE--EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 155 RTGVQ--IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 155 ~~g~~--~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
..|.. +++++++. .+..+|.+++++..... ++|+|++..-.+| ..++ ++++.++|+++|+++++|.+
T Consensus 266 ~sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~A 334 (586)
T PLN02271 266 GASIFFESLPYKVNP-QTGYIDYDKLEEKALDF-----RPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMA 334 (586)
T ss_pred cccceEEEEEccccc-ccCccCHHHHHHHhhhc-----CCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECc
Confidence 12544 44544543 35679999999855433 8998888766777 6677 77778888899999999999
Q ss_pred ccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH-------------------HHHHHHHH
Q 011801 233 YAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND-------------------TVVNCGRK 293 (477)
Q Consensus 233 y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~-------------------~i~~~~~~ 293 (477)
+.........+.+. .....++.+|.+|++ .|-|-|.|+..++ .+.+.+.+
T Consensus 335 H~aGLIa~g~~~sP---------~~~aDvvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~ 403 (586)
T PLN02271 335 HISGLVAAKECVNP---------FDYCDIVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINF 403 (586)
T ss_pred ccccccccCcCCCC---------CcCCcEEEeCCcccC--CCCCceEEEecccccccccCCccccccccccHHHHHHhhc
Confidence 97543333221111 112347889999998 6777899988542 12222221
Q ss_pred hcccCCC-chHH--HHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhc
Q 011801 294 MSSFGLV-SSQT--QYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKE 366 (477)
Q Consensus 294 ~~~~~~v-s~~~--q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~ 366 (477)
.-..+.. ++.. .++++..+. .++| ++..+++.++.+.|.+.|.+.|+++.... .+-.+|++++..-
T Consensus 404 aVfPglqgGphn~~IAalAvalkea~~~ef-----k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g-- 476 (586)
T PLN02271 404 AVFPSLQGGPHNNHIAALAIALKQVATPEY-----KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG-- 476 (586)
T ss_pred ccCCccccChhHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC--
Confidence 1111221 2111 222222232 3333 55667778889999999999999877532 2346788987531
Q ss_pred cCchHHHHHHHHHHHhcCeEEeCCCCCC---CCCCCEEEEEeccC-----CHHHHHHHHHHHHHHHh
Q 011801 367 KTLEGEIALWRTIVNDVKLNVSPGSSFQ---CTEPGWFRVCFANM-----DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 367 ~~~~~e~~l~~~ll~~~gI~v~pg~~f~---~~~~~~~Rl~~~~~-----~~e~l~~~l~~l~~~~~ 425 (477)
+.. ..+.++|++.||.+.--..++ +..++.+||+...+ .+++++++.+-|.++++
T Consensus 477 --~~G--~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 477 --LTG--KNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred --CCH--HHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 111 346677888899774322222 12356799988544 46889888888888876
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-13 Score=137.62 Aligned_cols=312 Identities=13% Similarity=0.091 Sum_probs=193.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-C-CcEEE--eCChHHHHHHHHHHhc--------CCC-----CeEEEcCCCccchHH
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-P-DRIVM--GGGATGANELIMFCLA--------NPG-----DAFLVPSPYYAAFDR 150 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~-~~i~~--t~G~t~al~~i~~~l~--------~~G-----d~vlv~~P~y~~~~~ 150 (477)
..++.+.+.+++.+..| ++ + +++.. |+|+|+|+.+++.+.. ..| ..|++..-.+..+..
T Consensus 78 ~~~le~~~~~~la~llg----~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~k 153 (431)
T TIGR01788 78 TAEIENRCVNMLADLWH----APAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEK 153 (431)
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHH
Confidence 34777777777776655 34 2 45544 8999999998876542 111 368888888999988
Q ss_pred HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc------C
Q 011801 151 DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK------N 224 (477)
Q Consensus 151 ~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~------~ 224 (477)
.++.. |+++..+++++ +++.+|+++|++++++ ++.+|+++..+|.||.+.| +++|.++|+++ |
T Consensus 154 a~~~l-g~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~ 222 (431)
T TIGR01788 154 FARYF-DVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWD 222 (431)
T ss_pred HHHHc-CceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCC
Confidence 88877 99999999875 4568999999999975 6788899999999999999 78888888899 9
Q ss_pred eEEEecccccccc--cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-HHHHHHHhccc----
Q 011801 225 IHLVCDEIYAATV--FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-VVNCGRKMSSF---- 297 (477)
Q Consensus 225 ~~lI~De~y~~~~--~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-i~~~~~~~~~~---- 297 (477)
+++++|.+|++.. |..+.. .. .+ . ......+..|.+|.+ +....+|.++..++. +...+.....|
T Consensus 223 ~~~HvDaaq~g~~~p~~~~~~-~~-~~-~----~~~~DSis~s~HK~~-~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~ 294 (431)
T TIGR01788 223 IPIHVDAASGGFIAPFVYPDL-EW-DF-R----LPRVKSINVSGHKYG-LVYPGVGWVIWRDEEALPEELIFHVNYLGGD 294 (431)
T ss_pred ceEEEecccHHHHHHHhCCCc-hh-hc-C----CCCceEEEECchhcc-CCCCCcEEEEEeChHHcchhheecccccCCC
Confidence 9999999998643 111111 10 00 0 123334667999976 244558999886653 22221111001
Q ss_pred ----CC-CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC--CceEEEEeeccchhhccCc
Q 011801 298 ----GL-VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS--NAGLFFWMDLRHLLKEKTL 369 (477)
Q Consensus 298 ----~~-vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~~~~~~l~~~~~~~~~ 369 (477)
.. .+...-.++..++.-..+-..-+++..++..+..+++.+.|++. ++++..+ ..+. +.++++.... ...
T Consensus 295 ~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~i-V~Fr~~~~~~-~~~ 372 (431)
T TIGR01788 295 EPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPL-VAFKLKDDAD-PGY 372 (431)
T ss_pred CCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceE-EEEEeCCCCC-CCc
Confidence 00 11111111122221000001224556667778888899999888 4777754 4443 3355543110 111
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 370 EGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
. ..++.+. +++.|+.+..-..-. ..+.-.+|+++.. .+.+.++.+++.|++++..
T Consensus 373 ~-~~~l~~~-L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (431)
T TIGR01788 373 T-LYDLSHR-LRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAY 429 (431)
T ss_pred C-HHHHHHH-HHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1 1234444 455698653221100 1123468999953 4889999999999998865
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=137.27 Aligned_cols=297 Identities=17% Similarity=0.169 Sum_probs=171.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-----H-----hh
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-----L-----SW 154 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-----~-----~~ 154 (477)
..++.+...+...+.++ .+|+...+ ..+++.|+..++.+|++|||+|+..++...++..- . .-
T Consensus 64 id~iE~la~~ra~~lF~----~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~ 139 (399)
T PF00464_consen 64 IDEIEELAIERAKELFG----AEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG 139 (399)
T ss_dssp HHHHHHHHHHHHHHHHT-----STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred hhHHHHHHHHHHHHHhC----CCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence 44555555555555555 44443332 34667799999999999999999999887665421 1 11
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. ..+.+++++++ ++..+|.+++++.+++. ++|+|++..-+.|- .++ ++++.++|.+.|.+|++|-++.
T Consensus 140 ~-~~~~~~y~~d~-~~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~~--~~d---~~~~reIad~vga~l~~D~sH~ 207 (399)
T PF00464_consen 140 L-YFESVPYPVDP-DTGLIDYDELEKLAKEH-----KPKLIICGASSYPR--PID---FKRFREIADEVGAYLMADISHI 207 (399)
T ss_dssp H-HSEEEEEEB-T-TTSSB-HHHHHHHHHHH-------SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTT
T ss_pred c-eEEEEeeeeec-CCCeECHHHHHHHHhhc-----CCCEEEECchhccC--ccC---HHHHHHHHHhcCcEEEeccccc
Confidence 2 46788899885 46789999999999887 89987775333222 233 7777888889999999999985
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeC-------------CHHHHHHHHHhcccCCCc
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSF-------------NDTVVNCGRKMSSFGLVS 301 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~-------------~~~i~~~~~~~~~~~~vs 301 (477)
.....+.-+.+... ...++.+|.+|+| +|-|-|.|++. ++.+.+.+.+....+..+
T Consensus 208 ~GLIa~g~~~~P~~---------~ADvvt~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg 276 (399)
T PF00464_consen 208 AGLIAGGLFPNPFP---------YADVVTGSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQG 276 (399)
T ss_dssp HHHHHTTSS--GCC---------TSSEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-S
T ss_pred ccceehheecCccc---------cceEEEeeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCccc
Confidence 43222222222111 1337789999999 89999999997 366666665443333332
Q ss_pred -hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 302 -SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 302 -~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
+....+++.+..-.+......++..+++.++.+.|.+.|.+.|+++... ..+-.+|++++... +. ...+...
T Consensus 277 ~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~----~~--g~~a~~~ 350 (399)
T PF00464_consen 277 GPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFG----ID--GKEAEKA 350 (399)
T ss_dssp S--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGT----S---HHHHHHH
T ss_pred CcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccc----cc--hHHHHHH
Confidence 2222222211111111122235667778889999999999999988742 22347789987521 11 1245677
Q ss_pred HHhcCeEEe----CCCCCCCCCCCEEEEEeccC-----CHHHHHHHHH
Q 011801 380 VNDVKLNVS----PGSSFQCTEPGWFRVCFANM-----DDDTLQVALN 418 (477)
Q Consensus 380 l~~~gI~v~----pg~~f~~~~~~~~Rl~~~~~-----~~e~l~~~l~ 418 (477)
+++.||.+. |+.. .+..+..+||+...+ .+++++++.+
T Consensus 351 Le~~gI~vnkn~iP~d~-~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 351 LEEAGIIVNKNTIPGDR-SPFVPSGLRLGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp HHHTTEE-EEE--TTTS-TTTT-SEEEEESHHHHHTT--HHHHHHHHH
T ss_pred HHhcCeeecccccCCCC-CCCCCCEEEECCHHHHhCCCCHHHHHHHHh
Confidence 889999875 3331 112245799998543 4556555443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-13 Score=131.45 Aligned_cols=339 Identities=15% Similarity=0.176 Sum_probs=200.5
Q ss_pred CCCCccccccccccccc----cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAENQL----CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+-..+..||+.++--++ ..+.+.+++.+.. +.-..|..+ .++.-.+|+.+.+..+
T Consensus 49 DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l-------------~~G~~fg~P---te~Ei~~Aell~~~~p----- 107 (432)
T COG0001 49 DVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQL-------------ERGLSFGAP---TELEVELAELLIERVP----- 107 (432)
T ss_pred eCCCCEeeehhccCcccccCCCCHHHHHHHHHHH-------------HhcCCCCCC---CHHHHHHHHHHHHhcC-----
Confidence 44455678887665444 3466777776631 223456544 3666677777765432
Q ss_pred CCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCc-------------------EEEEEeccCC
Q 011801 110 DPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGV-------------------QIVPVHCDIS 168 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------------~~~~v~~~~~ 168 (477)
.-+.|-+++++|+|...+++.- ...-|+|+..+-+|++....+....|. .++.+|
T Consensus 108 ~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~---- 183 (432)
T COG0001 108 SIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP---- 183 (432)
T ss_pred cccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec----
Confidence 2389999999999999888663 122388999999998876554332221 112222
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
|+ |++++++++++. +.++.+|++.----..|.+.+.+ -++.|.++|+++|+++|.||+.-++...-.......
T Consensus 184 --yN-D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~ 257 (432)
T COG0001 184 --YN-DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY 257 (432)
T ss_pred --CC-CHHHHHHHHHHc---CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccccc
Confidence 22 799999998864 45788766653334566665555 599999999999999999999987644422222222
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc-c--C--CCchHHHHHHHHhcCChhhHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS-F--G--LVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~-~--~--~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
.+ .+| +.+|.|.+| .|+.+|.+.+.. .+.+....... | + ..++++..+..+.|..-.- +
T Consensus 258 gi------~PD----lttlGKiIG-GGlP~ga~gGr~-eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~-~--- 321 (432)
T COG0001 258 GV------EPD----LTTLGKIIG-GGLPIGAFGGRA-EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT-E--- 321 (432)
T ss_pred Cc------Ccc----hhhhhhhhc-CCcceeeeccHH-HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHh-c---
Confidence 22 333 458899999 999999998844 44443322111 1 1 1345555555544432110 0
Q ss_pred HHHHHHHHHHHHHHHHHH----hhCCCeEecC-CceEEEEeeccc----hhhcc--CchHHHHHHHHHHHhcCeEEeCCC
Q 011801 323 VETSKRLAKRHHNFTKGL----EQVGINCLKS-NAGLFFWMDLRH----LLKEK--TLEGEIALWRTIVNDVKLNVSPGS 391 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L----~~~gi~~~~~-~~g~~~~~~l~~----~~~~~--~~~~e~~l~~~ll~~~gI~v~pg~ 391 (477)
+...+++.+.-+.|.++| .+.|+++.-. .+++|...-.+. ..+.. ..+.-..+.+.++++ ||++.|+.
T Consensus 322 ~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~ 400 (432)
T COG0001 322 EGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQ 400 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCcc
Confidence 002233334444444444 4557765532 333433221121 11111 111123455666655 99998763
Q ss_pred CCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 392 SFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
| +.+| +|.+ +++++++..++++.+++++.
T Consensus 401 -~----ea~f-lS~a-hte~di~~~~~a~~~~~~~~ 429 (432)
T COG0001 401 -F----EAGF-LSTA-HTEEDIDRTLEAADEAFKEL 429 (432)
T ss_pred -c----ccee-eecc-cCHHHHHHHHHHHHHHHHHh
Confidence 2 2344 6776 49999999999999988764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-13 Score=139.60 Aligned_cols=320 Identities=14% Similarity=0.157 Sum_probs=193.1
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCC--------Ccc-CCCcEEEeCChHHHHHHHHHHhc----C--------------
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGR--------VTF-DPDRIVMGGGATGANELIMFCLA----N-------------- 133 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~--------~~~-~~~~i~~t~G~t~al~~i~~~l~----~-------------- 133 (477)
.+...+...++.+.+.+|+.+..+.. ... +...-++|+|+|+|+..++.+-. .
T Consensus 120 ~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~ 199 (522)
T TIGR03799 120 KIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLF 199 (522)
T ss_pred eeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccch
Confidence 34445567899999999998765310 000 11236789999999988775521 1
Q ss_pred --------CCCeEEEcCCCccchHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCC
Q 011801 134 --------PGDAFLVPSPYYAAFDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202 (477)
Q Consensus 134 --------~Gd~vlv~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~N 202 (477)
++..|++..-.+....+.+... |+ +++.+|+++ ++.+|+++|++++++..+.+.++-+|+-+..++
T Consensus 200 ~~~~~~~~~~~~v~~S~~~H~S~~kaa~~l-glg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt 276 (522)
T TIGR03799 200 AALKHYGYDGLAILVSERGHYSLGKAADVL-GIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT 276 (522)
T ss_pred hhhhhccCCceEEEECCCchHHHHHHHHHc-CCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence 1346888888888888887776 87 788899874 568999999999987665554444444456677
Q ss_pred CcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe
Q 011801 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS 282 (477)
Q Consensus 203 PtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~ 282 (477)
.||.+-+ +++|+++|+++|+++++|.+|++...-.+.+. ..+.. ......+..|.+|.++ ....+|.++.
T Consensus 277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r---~~l~g---le~aDSit~d~HK~l~-~P~g~G~llv 346 (522)
T TIGR03799 277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYR---HLLKG---IERADSVTIDAHKQLY-VPMGAGMVLF 346 (522)
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHH---HHhcC---chhCCEEEEChhhcCC-cCcccEEEEE
Confidence 9999999 88899999999999999999986432222111 11110 1123456779999775 5577999988
Q ss_pred CCHHHHHHHHHhccc------------CC-Cch----HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 283 FNDTVVNCGRKMSSF------------GL-VSS----QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 283 ~~~~i~~~~~~~~~~------------~~-vs~----~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
.++...+.+.....| .. .+. +..+++...+.... +++..++..+..+++.+.|.+. +
T Consensus 347 r~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G-----~~~ii~~~~~la~~l~~~L~~~~~ 421 (522)
T TIGR03799 347 KDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKG-----YELLIDQSIEKAKYFADLIQQQPD 421 (522)
T ss_pred eCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhCCC
Confidence 765543333221111 00 111 12223333333322 4566667777888899999876 7
Q ss_pred CeEecC-CceEEEEeec-cchhhcc----------C----chHH-HHHHHHHHHhcCeEEeCCC----CCCCCCCCEEEE
Q 011801 345 INCLKS-NAGLFFWMDL-RHLLKEK----------T----LEGE-IALWRTIVNDVKLNVSPGS----SFQCTEPGWFRV 403 (477)
Q Consensus 345 i~~~~~-~~g~~~~~~l-~~~~~~~----------~----~~~e-~~l~~~ll~~~gI~v~pg~----~f~~~~~~~~Rl 403 (477)
++++.+ .-++.+ +++ |..+... . .+.- ..+.+++.++-.+.+++.. .+...+.-.||+
T Consensus 422 ~el~~~p~l~iv~-Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~ 500 (522)
T TIGR03799 422 FELVTEPELCLLT-YRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRV 500 (522)
T ss_pred eEEecCCCccEEE-EEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEE
Confidence 887654 344433 333 3222110 0 0000 1233333334233343221 111111246999
Q ss_pred EeccC--CHHHHHHHHHH
Q 011801 404 CFANM--DDDTLQVALNR 419 (477)
Q Consensus 404 ~~~~~--~~e~l~~~l~~ 419 (477)
|+.+. ++++++.+++.
T Consensus 501 ~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 501 VLANPLTTHEILQDILDE 518 (522)
T ss_pred EecCCCCCHHHHHHHHHH
Confidence 99885 67888877654
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-13 Score=138.00 Aligned_cols=342 Identities=11% Similarity=0.100 Sum_probs=194.2
Q ss_pred CCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+..||+..+ ...+ +.+.+.+++.+.-+ .+..+..+ -..+.+..+|+.+.+... -.
T Consensus 79 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~-------------~l~~~~~~-~~~~~~~~lae~L~~~~p----~~ 140 (459)
T PRK11522 79 TQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLA-------------KQPLHSQE-LLDPLRAMLAKTLAALTP----GK 140 (459)
T ss_pred CCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHh-------------hCcccccc-cCCHHHHHHHHHHHHhCC----CC
Confidence 345567787544 3444 34666666665321 11111111 113445555555543321 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--C--CC-CeEEEcCCCccchHHHHhhhCCcEEEE---EeccCC---CCcccCHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA--N--PG-DAFLVPSPYYAAFDRDLSWRTGVQIVP---VHCDIS---NNFKITREALE 179 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~--~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~---v~~~~~---~~f~i~~~~l~ 179 (477)
.+++++++++++|++.+++.-. . +| ..|+...-+|++....+...+|..... .+..+. -.|. |.++++
T Consensus 141 ~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~ 219 (459)
T PRK11522 141 LKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG-NIEAMR 219 (459)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCC-CHHHHH
Confidence 3689999999999999987632 1 23 368888888888654432222321111 010000 0111 678888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCC
Q 011801 180 AAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~ 258 (477)
+.+++....+.++.+|++..-..-.|.+. +.+.++++.++|+++|+++|+||++.++.-.+..+ . .+..+..+|
T Consensus 220 ~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a----~e~~gv~PD 294 (459)
T PRK11522 220 TALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF-A----CEHENVQPD 294 (459)
T ss_pred HHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh-h----hhccCCCCC
Confidence 88865433344676666654455567654 66679999999999999999999997642223211 1 111122344
Q ss_pred cEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHH--Hh---cccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHH
Q 011801 259 LIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGR--KM---SSFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRL 329 (477)
Q Consensus 259 ~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~--~~---~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l 329 (477)
++ +|+|.+| .| +.+|.+++.++ +.+... .. .+|+ .++.+..++.+.|+ +.++ .+++
T Consensus 295 --iv--t~gK~lg-gG~~Pigav~~~~~-i~~~~~~~~~~~~~T~~-gnp~~~Aaala~L~~i~~~~l--------~~~~ 359 (459)
T PRK11522 295 --IL--CLAKALG-GGVMPIGATIATEE-VFSVLFDNPFLHTTTFG-GNPLACAAALATINVLLEQNL--------PAQA 359 (459)
T ss_pred --EE--Eechhhh-CCCccceeEEEcHH-HHHHhccCCcccCCCCC-CCHHHHHHHHHHHHHHhcchH--------HHHH
Confidence 22 8899998 78 69999999654 333321 11 1122 35555555544443 3222 2333
Q ss_pred HHHHHHHHHHHhhC----C--CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 330 AKRHHNFTKGLEQV----G--INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 330 ~~r~~~l~~~L~~~----g--i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
++.-++|.+.|+++ + +.-. ...|+++.+.+... +....++..+++ +||.+.+.. .....+|+
T Consensus 360 ~~~g~~l~~~L~~l~~~~~~~i~~V-rG~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~----~~~~~lr~ 427 (459)
T PRK11522 360 EQKGDYLLDGFRQLAREYPDLVQEA-RGKGMLMAIEFVDN------EIGYNFASEMFR-QRVLVAGTL----NNAKTIRI 427 (459)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeeE-EeceeEEEEEecCc------hHHHHHHHHHHH-CCeEEEecC----CCCCEEEE
Confidence 34444455555443 2 1112 23467888887642 111245566655 699997542 12468999
Q ss_pred Eecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 404 CFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 404 ~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+. ++++++++++++|.+++++.
T Consensus 428 ~Ppl~~t~~~id~~l~~l~~~l~~~ 452 (459)
T PRK11522 428 EPPLTLTIEQCEQVLKAARKALAAM 452 (459)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9876 49999999999999998764
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=135.00 Aligned_cols=333 Identities=12% Similarity=0.057 Sum_probs=189.6
Q ss_pred CCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+..||+..+ .+.+ +.|.+.+.+.+.-+. ......|-. .+.+..+|+.+.+... -.
T Consensus 72 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~----------l~~~~~~~~----~~~~~~lAe~L~~~~p----~~ 133 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK----------QPLHSQELL----DPLRALLAKTLAALTP----GK 133 (442)
T ss_pred CCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHh----------CCCcccccC----CHHHHHHHHHHHHhCC----CC
Confidence 345567887554 4444 346666666553111 001111211 3444555555543321 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-----CCCeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCCCccc
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-----PGDAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISNNFKI 173 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-----~Gd~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~f~i 173 (477)
.+.+++++++++|++.+++.-.. ....|+...-+|++....+...++-. +..+|. .
T Consensus 134 ~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~ 206 (442)
T TIGR03372 134 LKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------G 206 (442)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------C
Confidence 25799999999999999876321 23578988988887654332221211 111221 1
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
|.+++++.+++....+.++.+|++..-..-.|... +++-++++.++|+++|+++|+||++.++.-.+.. .... .
T Consensus 207 d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~-~a~e----~ 281 (442)
T TIGR03372 207 DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKM-FACE----H 281 (442)
T ss_pred CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccc-hhhh----h
Confidence 56777777765433344677766654345567655 6777999999999999999999999764323321 1111 1
Q ss_pred ccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcC---ChhhHHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLS---DDEFVDNFLV 323 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~ 323 (477)
.+..+| ++ +|+|.+| .| +.+|.+++.++ +.+.+.. ..+|+ .++++..++.+.|+ +.++
T Consensus 282 ~gv~PD--iv--t~gK~lg-~G~~Pigavv~~~~-i~~~~~~~~~~~~~T~~-gnp~~~Aaa~a~L~~i~~~~l------ 348 (442)
T TIGR03372 282 EGVQPD--IL--CLAKALG-GGVMPIGATIATEA-VFSVLFDNPFLHTTTFG-GNPLACAAALATINELLEKNL------ 348 (442)
T ss_pred cCCCCC--ee--eehhhhc-CCcccceEEEecHH-HHHhhhccCccccCCCC-CCHHHHHHHHHHHHHHHhccH------
Confidence 122334 22 6899998 88 69999998544 4443321 11222 35555555555553 2222
Q ss_pred HHHHHHHHHHHHHHHHHhh----CC--CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 011801 324 ETSKRLAKRHHNFTKGLEQ----VG--INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE 397 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~----~g--i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~ 397 (477)
.++.++.-+++.+.|++ .+ +.-. ...|+++.+.+... .....++..+++ +||++.+... .
T Consensus 349 --~~~~~~~G~~l~~~L~~l~~~~~~~i~~v-RG~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~~----~ 414 (442)
T TIGR03372 349 --PAQAAIKGDFLLDGFQQLAAEYPDLIIEA-RGKGLLMAIEFRDN------EIGYAFAKELFQ-QNILVAGTLN----N 414 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCceEEE-ecceEEEEEEeCCh------HHHHHHHHHHHH-CCcEEeecCC----C
Confidence 12222333334444433 22 1112 24578888888642 111245666665 5999975321 1
Q ss_pred CCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 398 PGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 398 ~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
+..+|+..... +++++++++++|.+.+
T Consensus 415 ~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 415 AKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 35799988764 9999999999998753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-12 Score=135.13 Aligned_cols=294 Identities=13% Similarity=0.094 Sum_probs=162.9
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC--CCcc--
Q 011801 112 DRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS--NNFK-- 172 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~~f~-- 172 (477)
+++++++++++|++.+++.-. .....|+...-+|++....+...+|. .++.+|.... ..|.
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 193 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGIN 193 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcccccccccc
Confidence 689999999999999987642 23357888888888754322211110 1223332210 0010
Q ss_pred --cCHHH--------HHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 173 --ITREA--------LEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 173 --i~~~~--------l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
-+.++ +++.+........++.+||+.--....|.+ .+.+-+++|.++|+++|+++|+||++.++.-.+.
T Consensus 194 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~ 273 (457)
T PRK05639 194 GYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK 273 (457)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch
Confidence 02232 222221111123467777765334555764 4677899999999999999999999987422332
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
.+. .+. .+..+| ++ +|+|.+| .|+.+|.+++.++ +.+.... ..+++ .++.+..++.+.|+--+- +
T Consensus 274 ~~a--~~~---~gv~PD--iv--~~gK~l~-gG~pi~av~~~~~-i~~~~~~~~~~T~~-g~p~~~aaa~a~l~~l~~-~ 340 (457)
T PRK05639 274 WFA--SEW---FEVKPD--LI--IFGKGVA-SGMGLSGVIGRKE-LMDLTSGSALLTPA-ANPVISAAAEATLEIIEE-E 340 (457)
T ss_pred HHH--HHh---cCCCCC--EE--Eechhhc-CCCcceeEEehHH-HHhhcCCCcccCCC-cCHHHHHHHHHHHHHHHH-c
Confidence 211 111 122334 33 3899998 8999999999555 4332111 11222 445544444444432110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.+ ++.++.-++|.+.|++ .++...-..-|+++.+.+.........+....++..++ ++||.+.+..
T Consensus 341 ~l~----~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~-~~Gv~~~~~g---- 411 (457)
T PRK05639 341 NLL----KNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAF-ELGLILPSYG---- 411 (457)
T ss_pred cHH----HHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHH-hCCeEEeecC----
Confidence 111 2222233334444433 34332234456787777742111111111224555555 4699997642
Q ss_pred CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
.....+|+..... +++++++++++|.+.+++.
T Consensus 412 ~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 412 MFGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 1246899998764 9999999999999999764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=138.78 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcccCCCCcc-CCCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTF-DPDRIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~-~~~~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
.+.++.++++++ . +..+|++ +++++.+++.++..++.+||++++..-...+ +.+.++.. |.. ..+.
T Consensus 51 ~~~~~~l~~l~~--------~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~-g~~-~~~~ 120 (360)
T PRK05355 51 EEAEADLRELLN--------IPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKY-GEV-NVAA 120 (360)
T ss_pred HHHHHHHHHHhC--------CCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCc-eEEe
Confidence 345555555554 2 2234555 5779999999999999999988877655433 33445555 754 5555
Q ss_pred ccCCCCcccCHHHHHH-HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 165 CDISNNFKITREALEA-AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~-~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
.+...++ .+..++++ ++++ ++++|.+++..+.||...+ ++.+| +|+++|+|.+.+ +...+
T Consensus 121 ~~~~~g~-~~~~~~~~~~l~~------~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss---~g~~~- 181 (360)
T PRK05355 121 SSEDDGF-TYIPPLDEWQLSD------DAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSD---ILSRP- 181 (360)
T ss_pred cccccCC-CCCCChhhccCCC------CCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCcc---ccCcc-
Confidence 4432233 23333444 4432 6899999999999999984 25544 799999999997 44433
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH-------------HhcccCCCchHHHHHHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR-------------KMSSFGLVSSQTQYLLAS 310 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~-------------~~~~~~~vs~~~q~~~~~ 310 (477)
..+.+ .+ +++.|..|.+|.|| +|+++.+++.+..... ....+++.+...-+++.+
T Consensus 182 idv~~--------~d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~ 249 (360)
T PRK05355 182 IDVSK--------FG--LIYAGAQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGL 249 (360)
T ss_pred CCHHH--------cc--EEEEeccccccCCc--eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHH
Confidence 33322 23 77889999999666 8888887765533211 011234445555555555
Q ss_pred hcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhCCCe-EecC---CceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 311 MLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQVGIN-CLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 311 ~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~gi~-~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
.|+.-. +. -+++..++.++..+++.++|+++|+. ...+ ..+..+.+.++... .. .++...+ .+.|+
T Consensus 250 aL~~i~--~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~-----~~-~~~~~~~-~~~Gi 320 (360)
T PRK05355 250 VFKWLK--EQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEE-----LD-KKFLAEA-KAAGL 320 (360)
T ss_pred HHHHHH--HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChH-----HH-HHHHHHH-HHCCC
Confidence 554211 11 25677788888889999999998752 2111 23234556666531 11 1333433 45699
Q ss_pred EEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+|.. ..+.+|+|+... +.++++.+++.|++++.+
T Consensus 321 ~~~~~~~----~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 321 VGLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred cccCCCC----ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 8866642 247899999775 899999999999998875
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-12 Score=132.43 Aligned_cols=295 Identities=12% Similarity=0.113 Sum_probs=163.5
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCCc
Q 011801 112 DRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNNF 171 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~f 171 (477)
+.+++++++++|++.+++.-. .+| .+|+...-+|++....+-..+|. .+..++.. +.+
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 183 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPP--DCY 183 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCC--ccc
Confidence 589999999999999887642 123 57888888888765332211121 11222211 111
Q ss_pred cc---------C---HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 172 KI---------T---REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 172 ~i---------~---~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
.. + .+.+++.++. ....++.+||+.--..-.|.+ .+.+-+++|.++|++||+++|.||+..++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGR 261 (451)
T PRK07678 184 RMPGIESEDIYDLECVKEIDRVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGR 261 (451)
T ss_pred cccccCChHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCc
Confidence 11 1 1223444432 123467776665334445655 5677799999999999999999999987533
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---------hcccCCCchHHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---------MSSFGLVSSQTQYLL 308 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---------~~~~~~vs~~~q~~~ 308 (477)
.+.. ..... .+..+| ++ +++|.+| .| +.+|.+++.++ +.+.+.. ..+|+ .++.+..++
T Consensus 262 tG~~-~~~~~----~gv~PD--iv--t~gK~lg-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~h~~T~~-gnp~~~aaa 329 (451)
T PRK07678 262 TGKA-FGFMN----YGVKPD--II--TMAKGIT-SAYLPLSATAVKKE-IYEAFKGKGEYEHFRHVNTFG-GNPAACALA 329 (451)
T ss_pred Cchh-HHHHh----cCCCCC--EE--Eeecccc-cCCcceeEEEEcHH-HHHHHhccCcccccccCCCCC-cCHHHHHHH
Confidence 3322 12111 122344 22 7799998 77 69999999655 4443321 11222 455555555
Q ss_pred HHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc---CchHHHHHHHHHHHh
Q 011801 309 ASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK---TLEGEIALWRTIVND 382 (477)
Q Consensus 309 ~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~---~~~~e~~l~~~ll~~ 382 (477)
.+.|+ +.++ -+...+.-++++ +.|.+.++++++......-|+++-+.+....... .......++..+++
T Consensus 330 ~a~l~~l~~~~~-~~~~~~~g~~l~---~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~- 404 (451)
T PRK07678 330 LKNLEIMENENL-IERSAQLGELLL---EQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKE- 404 (451)
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHHH---HHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHH-
Confidence 55554 2222 111222222222 2232333344432223345677777774311110 00112245555554
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.||.+.+.....+.....+|++... +++++++++++++.+++++.
T Consensus 405 ~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 405 KGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 5999976422111223579999875 49999999999999998753
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-12 Score=118.59 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=194.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY-YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+--.++...++.+++.++..++.|||.|++..-. |..-..++..+.|+++..++.+. +-.++++.+.+++.++
T Consensus 68 ~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh---- 141 (385)
T KOG2862|consen 68 AQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADI--GQAVPLEEITEKLSQH---- 141 (385)
T ss_pred CceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCc--ccCccHHHHHHHHHhc----
Confidence 3456777778999999999999999999987654 65444444445599999998664 4468899999999875
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
++++|++++-...||.+-+. +..+-++|++|+.++++|.+-+ .++.+|. .+ .++..+....--|+
T Consensus 142 -~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~~~lllVD~VaS---lggt~F~-----mD----ewgVDvaytgSQKa 206 (385)
T KOG2862|consen 142 -KPKAVFVTHGDSSTGVLQDL--LAISGELCHKHEALLLVDTVAS---LGGTEFE-----MD----EWGVDVAYTGSQKA 206 (385)
T ss_pred -CCceEEEEecCccccccchH--HHHHHHHhhcCCeEEEEechhh---cCCccce-----eh----hhcccEEEecchhh
Confidence 89999999988899998773 4556678889999999999987 5666553 12 23333333333599
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHhc--------------cc-----------CCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKMS--------------SF-----------GLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~~--------------~~-----------~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
+|.|. .++.|..++..... ++... .| .+.+.+.-+.+.++|..- .++-+++
T Consensus 207 L~aP~-GLsiisfS~ka~~~-~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I--~eeGL~~ 282 (385)
T KOG2862|consen 207 LGAPA-GLSIISFSDKALEA-IRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALI--AEEGLEN 282 (385)
T ss_pred cCCCC-CcceeecCHHHHHH-HhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHH--HHHHHHH
Confidence 99542 35555555544333 22211 11 234556667777777542 2566788
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEecCCc----eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 325 TSKRLAKRHHNFTKGLEQVGINCLKSNA----GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~gi~~~~~~~----g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
..++.++..+++...|+++|++...... .-.-.+.+|...+.. +....+..+.++.+.-| -++..+..
T Consensus 283 ~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~------dVv~~~~~~~~vei~gg--lg~~~gKv 354 (385)
T KOG2862|consen 283 SWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWK------DVVAYAMSHYVVEIGGG--LGPTVGKV 354 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHH------HHHHHHHHhcCEEeccc--cCCCcccE
Confidence 8888999999999999999876432111 012245556544432 46677777767766544 45556779
Q ss_pred EEEEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 401 FRVCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 401 ~Rl~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
|||++-. .+.|.++..++.|+..+++
T Consensus 355 ~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 355 FRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred EEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 9998833 3789999999999988876
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-12 Score=130.75 Aligned_cols=292 Identities=10% Similarity=0.055 Sum_probs=194.0
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCC--cEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPD--RIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~--~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
+..++.+.+-+|+.+..| ++++ .-++|+|+|+++..++.+-.+ +...++++.-++..+.+++... |++++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g----~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~ll-gi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWE----IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhc-CCcceE
Confidence 468999999999998877 3343 368899999999988877533 3347888888999999999887 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCe-----EEEecccccccc
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNI-----HLVCDEIYAATV 237 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~-----~lI~De~y~~~~ 237 (477)
||++ .++++|+++|++++++. ..++-+|+.+-++.++|.+=+ +++|.++|+++|+ |+.+|.+|++++
T Consensus 205 Vp~d--~~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~ 276 (470)
T PLN02263 205 VDTL--VSGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLM 276 (470)
T ss_pred eccC--CCCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence 9986 46799999999998752 123555666778899999988 7888888888886 999999998864
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc------C-CCc-----hHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF------G-LVS-----SQTQ 305 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~------~-~vs-----~~~q 305 (477)
............ .....-+.-+.+|.++ ..+.+|.++..++.+ ..+.....| . ..| .+..
T Consensus 277 lPf~~~~~~~df------~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al~l 348 (470)
T PLN02263 277 MPFVKRAPKVTF------KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFL 348 (470)
T ss_pred hhhcccccccCC------CcCccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHHHH
Confidence 311000000111 1123344569999887 778999999876543 222111111 1 011 2223
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 306 YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 306 ~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
++....+.... +++..++..+..+++.+.|++.|+........+.+.+.-+. .+ . . ..|.
T Consensus 349 W~~L~~~G~~G-----~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~--------~~--~----~-~~gW 408 (470)
T PLN02263 349 WYTLNRKGYRG-----FQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK--------DE--E----F-VRRW 408 (470)
T ss_pred HHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCc--------hH--H----h-hcce
Confidence 33333333322 35555666677788999999888875543333455554331 00 0 1 2366
Q ss_pred EEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+ .++.+++++.. .+.+.++++++.|++....
T Consensus 409 ~L~~-------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 409 QLAC-------QGNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred EEcc-------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 5543 13469999965 4889999999998887653
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=127.27 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=135.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
...+.+.+++..+ ....++++++..|+..++..|+.+|+.|+..+..|.+..+.++. ..|++...++
T Consensus 79 ~~~le~~iaal~g----------a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd 148 (409)
T KOG0053|consen 79 RDVLESGIAALEG----------AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVD 148 (409)
T ss_pred hHHHHHHHHHHhC----------CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeec
Confidence 4667777777664 34588888889999999999999999999999999987765543 2477777666
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++ +++.+++++++ ++++|++..|+||+..+.+ +++|.++|+++|++||+|+.++..++..+
T Consensus 149 ~~-------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~p--- 209 (409)
T KOG0053|consen 149 VD-------DLKKILKAIKE------NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQDP--- 209 (409)
T ss_pred hh-------hHHHHHHhhcc------CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccCh---
Confidence 54 46777777764 7999999999999999999 77888888899999999999875433221
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~ 314 (477)
. ..+..|+++|.+|.+|= ..+=.|.++.+...+...++... -.+..+++..+.+.+-+..
T Consensus 210 --L--------~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt 272 (409)
T KOG0053|consen 210 --L--------PLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKT 272 (409)
T ss_pred --h--------hcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch
Confidence 1 22456899999999962 22445667775455555444332 2234566655555444444
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-13 Score=127.16 Aligned_cols=301 Identities=14% Similarity=0.136 Sum_probs=194.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
..+|.+.+|+.+++ +.-++.++.--|++..++.|.+ ||=.|.-..-.+......++.. ++.-+.+.-
T Consensus 218 hv~LE~eLA~LHqK----------~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns-~v~K~IFrH 286 (570)
T KOG1360|consen 218 HVRLEAELADLHQK----------EAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNS-RVPKHIFRH 286 (570)
T ss_pred hhhHHHHHHHHhcC----------cceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhc-CCcceeecc
Confidence 36788888888763 4445555555566666655533 6766666666676666667655 655433331
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+ |++.|++.+++..+. .+|.|-+..-+.-+|.+.+ |++|++++.+||.+-.+||+++-..|+... ..
T Consensus 287 ---N----D~~hL~~lL~~~~~s--vPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rG-aG 353 (570)
T KOG1360|consen 287 ---N----DLDHLEQLLQSSPKS--VPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRG-AG 353 (570)
T ss_pred ---C----CHHHHHHHHHhCCCC--CCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCC-CC
Confidence 1 789999998865333 5688888888999999999 888999999999999999999865565432 33
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHH-HH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNF-LV 323 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~-~~ 323 (477)
+.+- .|......|+.+++.|+||+-| |||.+..+ +++..+.+ ..|....++....++.+|+.-.++... =+
T Consensus 354 vger---dGvm~kvDiIsGTLgKafGcVG---GYIAat~~-LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~ 426 (570)
T KOG1360|consen 354 VGER---DGVMHKVDIISGTLGKAFGCVG---GYIAATRK-LVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGR 426 (570)
T ss_pred cccc---CCcchhhhhcccchhhhccccc---ceehhhhh-HHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhH
Confidence 2221 1112344578899999999998 99998554 45555544 333222222222223333322221100 02
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEE
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWF 401 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~ 401 (477)
..++..++.-.++.+.|.+.|+++.+.... .+-+.+.+.... .+.+..|+.++||.|..- .|.- .+...+
T Consensus 427 ~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~l~------~~~sd~Li~~h~iYvQaI-NyPTV~rG~E~L 498 (570)
T KOG1360|consen 427 VLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVGDAALA------KQASDILISKHNIYVQAI-NYPTVARGTERL 498 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeeccCHHHH------HHHHHHHHHhcCeEEEec-cCCcccccceee
Confidence 233444556678888999999999876653 555555532221 256788999999999654 3432 344578
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
||...- .+++.++.+++.+..++.+.
T Consensus 499 RiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 499 RIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 887743 38899999999999988753
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=140.62 Aligned_cols=187 Identities=22% Similarity=0.337 Sum_probs=126.9
Q ss_pred ccccCCCCC-cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCC
Q 011801 79 IAIFQDYHG-LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 79 ~~~Y~~~~G-~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
+.+...+.| ..+..+.+|+.++- ....++++|+|.++.+++.+++.|||.||++.-++-.....+.+. |
T Consensus 58 lD~L~~p~G~I~eAe~~aA~~fGA---------d~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~-g 127 (417)
T PF01276_consen 58 LDDLHDPEGIIKEAEELAARAFGA---------DKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILS-G 127 (417)
T ss_dssp CBBTTTTBTHHHHHHHHHHHHHTE---------SEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHH-T
T ss_pred cCcccCCccHHHHHHHHHHHhcCC---------CeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-C
Confidence 333333444 66777888888872 346888999999999999999999999999999999998888887 9
Q ss_pred cEEEEEeccCCCCc----ccCH-----HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 158 VQIVPVHCDISNNF----KITR-----EALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 158 ~~~~~v~~~~~~~f----~i~~-----~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
++++.++.. .+.+ .+++ +.+++++++..... .+++|++++| +-.|.+.+ +++|+++|+++++.|+
T Consensus 128 a~Pvyi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k-~~~~vvlt~P-TY~Gv~~d---i~~I~~~~h~~~~~ll 201 (417)
T PF01276_consen 128 AIPVYIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAK-APRLVVLTSP-TYYGVCYD---IKEIAEICHKHGIPLL 201 (417)
T ss_dssp EEEEEEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH-CESEEEEESS--TTSEEE----HHHHHHHHCCTECEEE
T ss_pred CeEEEecCC-ccccCCccCCChhhhhHHHHHHHHHhCcccc-CceEEEEeCC-CCCeEEEC---HHHHHHHhcccCCEEE
Confidence 999888765 3333 3455 88888887642211 1455999998 56899999 8999999999999999
Q ss_pred eccccccc-ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCH
Q 011801 229 CDEIYAAT-VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFND 285 (477)
Q Consensus 229 ~De~y~~~-~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~ 285 (477)
+||+|.+. .|. +-+.+....-.+ +.....++++.|.+|.+ |++. .++|....+
T Consensus 202 vDEAhGah~~F~-~lp~~a~~~gad-~~~~~~~~vvqS~HKtL--~altQts~lh~~~~ 256 (417)
T PF01276_consen 202 VDEAHGAHFGFH-PLPRSALALGAD-RPNDPGIIVVQSTHKTL--PALTQTSMLHVKGD 256 (417)
T ss_dssp EE-TT-TTGGCS-GGGTTCSSTTSS--CTSBEEEEEEEHHHHS--SS-TT-EEEEEETC
T ss_pred EEccccccccCC-CCccchhhccCc-cccccceeeeechhhcc--cccccceEEEecCC
Confidence 99999864 233 111111111010 11234678899999998 5665 456665544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-12 Score=130.84 Aligned_cols=305 Identities=14% Similarity=0.105 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc------C-CC-CeEEEcCCCccchHHHHhhhCC----
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA------N-PG-DAFLVPSPYYAAFDRDLSWRTG---- 157 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~------~-~G-d~vlv~~P~y~~~~~~~~~~~g---- 157 (477)
+.+..+|+.+.+... -+.+++++++++++|++.+++... + ++ .+|+...-+|++........++
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~ 165 (459)
T PRK05965 90 EPAIRLAAKLAERAP----GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAF 165 (459)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchh
Confidence 344455555543321 124689999999999999987632 1 22 5788889899886432111111
Q ss_pred ----------cEEEEEeccCCCCcccCH--------HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHH
Q 011801 158 ----------VQIVPVHCDISNNFKITR--------EALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVS 218 (477)
Q Consensus 158 ----------~~~~~v~~~~~~~f~i~~--------~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~ 218 (477)
...++.+......+.-+. +++++.++.. ...++.+||+.--....|.+ .+.+-+++|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~ 243 (459)
T PRK05965 166 HRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE 243 (459)
T ss_pred hcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence 111111211000111122 4555555431 11367777776445556764 57778999999
Q ss_pred HHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH----
Q 011801 219 FINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---- 293 (477)
Q Consensus 219 ~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---- 293 (477)
+|++||+++|.||+..++.-.+..+. . +. .+..+| ++ +++|.+| .| +.+|.+++.++. .+....
T Consensus 244 lc~~~gillI~DEV~tGfGRtG~~~a-~-~~---~gv~PD--iv--~~gKgl~-gG~~Pi~av~~~~~i-~~~~~~~~~~ 312 (459)
T PRK05965 244 ACRELGILFVADEVITGFGRTGPLFA-C-EA---EGVVPD--LM--TVAKGLT-SGYVPMGAVLMSDHV-YQGIADGAGA 312 (459)
T ss_pred HHHHcCCEEEEechhccCccCchhhh-H-hh---cCCCCC--eE--Eechhhc-cCCcceeEEEEcHHH-HHHHhccccc
Confidence 99999999999999988543443221 1 11 122333 33 6789998 89 499999996554 333321
Q ss_pred -----h-cccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhh---CCCeEecCCceEEEEeecc
Q 011801 294 -----M-SSFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQ---VGINCLKSNAGLFFWMDLR 361 (477)
Q Consensus 294 -----~-~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~---~gi~~~~~~~g~~~~~~l~ 361 (477)
. .+|+ .++++..++.+.|+ +.++ .++.++.-++|.+.|++ .++-..-..-|+++-+++.
T Consensus 313 ~~~~~h~~T~~-gnpl~~Aaa~a~L~~l~~~~l--------~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~ 383 (459)
T PRK05965 313 AAPVGHGYTYS-AHPVSAAVGLEVLRLYHEGGL--------LANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELV 383 (459)
T ss_pred cccccccCCCC-CCHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEe
Confidence 1 1222 45555555555443 3332 12222333334444433 2321122345677777775
Q ss_pred chhhccCc-h----HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 362 HLLKEKTL-E----GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 362 ~~~~~~~~-~----~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
........ + ....++..++ ++||++.+. +...+|++.... +++++++++++|.+++++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~i~~~~~-~~Gll~~~~------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 384 ADKATKTPFDAALDPADRIFDRAY-ANGLVFRAF------GDGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred ccccccCCCCchhHHHHHHHHHHH-hCCeEEEec------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 32111110 1 1123445555 569999753 245689887653 9999999999999999764
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=132.23 Aligned_cols=282 Identities=12% Similarity=0.125 Sum_probs=169.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-CCcEEEe-CChHHHHHHHHHHhcCCCCeEEEcCCCccc-hHHHHh---hhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-PDRIVMG-GGATGANELIMFCLANPGDAFLVPSPYYAA-FDRDLS---WRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t-~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~~~~~---~~~g~~~~ 161 (477)
+.+.|+.++++++ .+ +.+|+++ +++|.+++.++..+..+ +.+++..-.|.. +...+. |. + ++.
T Consensus 43 ~~~~r~~l~~l~~--------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~-~-~~~ 111 (361)
T TIGR01366 43 VGRVREGLAELFS--------LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWL-G-EPI 111 (361)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhcc-C-Cce
Confidence 4677888888876 32 3478886 55999999999998643 333343333432 222222 22 3 455
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++... .++. .+ +.++++|.+++.+|.||...+.++ | ++++|+++|+|.+.+ +...
T Consensus 112 ~~~~~~~~--~~~~-----~~------~~~~~lV~~~h~et~tG~~~pi~~---I---~~~~g~~~iVDavqs---~g~~ 169 (361)
T TIGR01366 112 IVTADPGS--APEP-----QA------DPGVDVIAWAHNETSTGVAVPVRR---P---EGSDDALVVIDATSG---AGGL 169 (361)
T ss_pred EEecCCCC--CCCC-----cc------CCCCCEEEEcccCCccceeccccc---c---cccCCCeEEEEcCcc---ccCC
Confidence 55554321 2222 11 348999999999999999999544 4 478999999999997 4443
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh----------------------cccCC
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM----------------------SSFGL 299 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~----------------------~~~~~ 299 (477)
+ ..+.. ..+++.|..|.+|.||- +++++.+++.+....... ..+++
T Consensus 170 ~-idv~~----------~D~~~~s~~K~lg~~~G-l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~t 237 (361)
T TIGR01366 170 P-VDIAE----------TDVYYFAPQKNFASDGG-LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNT 237 (361)
T ss_pred C-CCHHH----------CCEEEEEchhhcCCCCc-eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCC
Confidence 3 33332 23678899999997752 666666665543321100 01122
Q ss_pred CchHHHHHHHHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhCC-CeEecC-C---ceEEEEeeccchhhccCchHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQVG-INCLKS-N---AGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~-~---~g~~~~~~l~~~~~~~~~~~e 372 (477)
.+...-+++.++++. +.+ -++...++.++..+.+.+.|.+.+ ++.+.. . ......+.++...+.
T Consensus 238 p~i~~i~~l~~al~~---l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~~------ 308 (361)
T TIGR01366 238 PAIATLALLAEQIDW---MNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDIDA------ 308 (361)
T ss_pred chHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccCH------
Confidence 222222233333321 111 145556777888888999998886 444421 1 111122333332221
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.++...+ +++||.+.+|. +..+++.||+++... ++++++.+++.|++++++
T Consensus 309 ~~v~~~L-~~~gI~i~~~~--~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 309 ATVAKIL-RANGIVDTEPY--RKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHH-HHCCCeeccCc--cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 1344444 66799998763 223457899999775 999999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-12 Score=129.32 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=174.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc------hHHHHhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA------FDRDLSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~------~~~~~~~~~g~~~~ 161 (477)
+..+++.+|++.+ .+..+++++++.|+.+++.++ .+||.|++++..+.. +...++.. |++++
T Consensus 129 ~~~~e~~lA~l~G----------ae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~~~-G~~l~ 196 (464)
T PRK04311 129 DRALAALLCALTG----------AEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGELVEIGGAFRIPDVMRQA-GARLV 196 (464)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchhhhhcCcchhhHHHHHHC-CcEEE
Confidence 3688888888876 345778888889999888665 789999998764331 12234444 99998
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCC--cc--cCCCHHHHHHHHHHHHhcCeEEEeccccccc-
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP--LG--TTLDRDTLKSLVSFINDKNIHLVCDEIYAAT- 236 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NP--tG--~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~- 236 (477)
.++.+. ..+++++++++.+ ++++|++.+++|| +| ...+ +++|+++|+++|+++|+|...+.+
T Consensus 197 ~v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~ 263 (464)
T PRK04311 197 EVGTTN----RTHLRDYEQAINE------NTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLV 263 (464)
T ss_pred EECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 887542 2468889888864 7899999999999 35 4556 889999999999999999964321
Q ss_pred ---ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHH----
Q 011801 237 ---VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQY---- 306 (477)
Q Consensus 237 ---~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~---- 306 (477)
.|.-+....+...+ ..+..++++|.+|.+|-| ..|++++.++.+ +.+++. +.. -+...+..
T Consensus 264 ~~~~~gl~~~p~~~~~l-----~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li-~~l~~~~~~r~l-r~dk~~l~~l~~ 334 (464)
T PRK04311 264 DLSQYGLPDEPTVQELL-----AAGVDLVTFSGDKLLGGP--QAGIIVGKKELI-ARLKKHPLKRAL-RVDKLTLAALEA 334 (464)
T ss_pred cchhccCCCCCchhhHH-----hcCCcEEEecCcccccCC--ceEEEEEcHHHH-HHHhhchhHHHH-hcchHHHHHHHH
Confidence 01101111222222 235568899999998633 589999965544 333311 111 12222222
Q ss_pred HHHHhcCChh-hH----HHHHHHHHHHHHHHHHHHHHHHhhCC---C--eEecC----CceEE-------EEeeccchhh
Q 011801 307 LLASMLSDDE-FV----DNFLVETSKRLAKRHHNFTKGLEQVG---I--NCLKS----NAGLF-------FWMDLRHLLK 365 (477)
Q Consensus 307 ~~~~~L~~~~-~~----~~~~~~~~~~l~~r~~~l~~~L~~~g---i--~~~~~----~~g~~-------~~~~l~~~~~ 365 (477)
.+..++...+ +. -+.+....+++.++.+.+.+.|+... + ++.+. .+|-. .-+.+...
T Consensus 335 ~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-- 412 (464)
T PRK04311 335 TLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-- 412 (464)
T ss_pred HHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC--
Confidence 2233332211 10 11233334667777888888887652 2 33322 11111 11122110
Q ss_pred ccCchHHHHHHHHHHHh--cCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 366 EKTLEGEIALWRTIVND--VKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 366 ~~~~~~e~~l~~~ll~~--~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
... ..++.+ .+++ ..|..+ ..++.|.+-+..+.+++++.++++|++++.
T Consensus 413 --~~~-~~~l~~-~lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 413 --DRS-LEALAA-RLRLLPPPVIGR-------IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred --CCC-HHHHHH-HHhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 101 113333 3444 234443 246778888887889999999999998764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-12 Score=130.53 Aligned_cols=349 Identities=11% Similarity=0.105 Sum_probs=188.0
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCC-CCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDY-HGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+.+||+..+ .+.+ +.+.+.+.+++.-+ .+..+... .+..+....+|+.+.+... .
T Consensus 85 D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~-------------~~~~~~~~~~~~~~~~~~lae~L~~~~~---~ 148 (504)
T PLN02760 85 DINGKKYLDALAGLWCTALGGSEPRLVAAATEQLN-------------KLPFYHSFWNRTTKPSLDLAKELLEMFT---A 148 (504)
T ss_pred ECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHh-------------hccceecccccCcHHHHHHHHHHHhhcC---C
Confidence 4455678898653 3444 34556665555311 11111111 1223555556666543311 0
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCC
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDIS 168 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~ 168 (477)
.+-+.+++++++++|++.+++... .++ ..|+..+-+|++........+|.. +..++++
T Consensus 149 ~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p-- 226 (504)
T PLN02760 149 RKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP-- 226 (504)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC--
Confidence 123579999999999999998752 133 578888888887643221111321 1122211
Q ss_pred CCccc-----C--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 169 NNFKI-----T--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 169 ~~f~i-----~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
+.|.. + .++|++.+.+. ...++.+|++.--..-.|.+ .+.+-+++|.++|+++|+++|+||++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~T 304 (504)
T PLN02760 227 HYWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVIC 304 (504)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhh
Confidence 11110 1 23455555321 12356665554334455765 467779999999999999999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH----------hcccCCCchH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK----------MSSFGLVSSQ 303 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~----------~~~~~~vs~~ 303 (477)
++.-.+..+. .+. .+..+| +.+|+|.+| .| +.+|.+++++ .+.+.+.. ...|+ .++.
T Consensus 305 GfGRtG~~~a--~e~---~gv~PD----ivtlgK~lg-gG~~PigAv~~~~-~i~d~~~~~~~~~~~~~h~~T~~-gnPl 372 (504)
T PLN02760 305 AFGRLGTMFG--CDK---YNIKPD----LVSLAKALS-SAYMPIGAVLVSP-EISDVIHSQSNKLGSFAHGFTYS-GHPV 372 (504)
T ss_pred CCcccchhhH--HHh---cCCCCc----EEEeccccc-CCccccceEeecH-HHHhhhhcccccccCcccCCCCC-CCHH
Confidence 7533443221 111 122344 458899998 67 4899988854 44444321 11222 4555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHh---hCCCeEecCCceEEEEeeccchhhcc-CchH----HHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLE---QVGINCLKSNAGLFFWMDLRHLLKEK-TLEG----EIAL 375 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~---~~gi~~~~~~~g~~~~~~l~~~~~~~-~~~~----e~~l 375 (477)
+..++.+.|+--+ ++ ...+++++.-++|.++|+ +.++...-..-|+++-+.+....... .+.. ...+
T Consensus 373 ~~Aaala~Le~i~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i 447 (504)
T PLN02760 373 SCAVALEALKIYK--ER---NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYF 447 (504)
T ss_pred HHHHHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHH
Confidence 5555555553211 10 112233333333444443 33432222344677777774321111 1111 1234
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+..++ ++||.+.+.. ..+|++... +++++++++++++.+++.+.
T Consensus 448 ~~~~~-~~Gvl~~~~g-------~~lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 448 GAECK-KRGMLVRVAG-------DNIMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred HHHHH-hCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45555 5699997631 358999765 49999999999999998764
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=128.13 Aligned_cols=348 Identities=11% Similarity=0.092 Sum_probs=186.7
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ ...+ +.+.+.+.+++.-+ .+..+....-..+....+|+.+.+... -
T Consensus 45 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~L~~~~p----~ 107 (445)
T PRK09221 45 DADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAA-------------TLDYAPAFQMGHPLAFELAERLAELAP----G 107 (445)
T ss_pred eCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC----C
Confidence 4556678888544 3334 34556666655311 111111100012334445555543321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccC--
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N-P-GDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDI-- 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~-~-Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~-- 167 (477)
..+++++++++++|++.+++... + + ..+|+...-+|++....+-..+|. .+..++...
T Consensus 108 ~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (445)
T PRK09221 108 GLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDL 187 (445)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccc
Confidence 23689999999999999887532 1 1 257888888888764321111111 112222210
Q ss_pred -CCCccc--------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 -SNNFKI--------TREALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 -~~~f~i--------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
...|.. ..+++++.++.. ...++.+|++.--....|... +.+-+++|.++|+++|+++|+||++.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G 265 (445)
T PRK09221 188 PENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG 265 (445)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence 001111 124555555431 113677766664455667754 56679999999999999999999998643
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH--------h--cccCCCchHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK--------M--SSFGLVSSQTQY 306 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~--------~--~~~~~vs~~~q~ 306 (477)
-.+..+. . +. .+..+| +.+++|.+| .| +.+|.++++++ +.+.+.. . ..|+ .++++..
T Consensus 266 RtG~~~~-~-~~---~gv~PD----i~~~gK~l~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~~~~T~~-~~pl~~a 333 (445)
T PRK09221 266 RLGAAFA-A-ER---FGVTPD----IITFAKGLT-NGAIPMGAVIASDE-IYDAFMQGPEYAIEFFHGYTYS-AHPVACA 333 (445)
T ss_pred cCchhhH-H-Hh---cCCCCC----EEEeccccc-cCcccceeeEEcHH-HHHhhccCcccccccccccCCC-cCHHHHH
Confidence 3333211 1 11 111334 338899997 66 68999988554 4443321 0 1222 3455544
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 307 ~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
++.+.|+--+ + ....+++++.-+++.+.|+++ +... ....-|++.-+.+........ ....++++.++ +.
T Consensus 334 aa~a~L~~i~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~-~~~~~~~~~~~-~~ 406 (445)
T PRK09221 334 AGLATLDIYR--E---EDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPG-ARGYEAFMKCF-EK 406 (445)
T ss_pred HHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEeccccccc-chHHHHHHHHH-HC
Confidence 4444443211 1 112334455555566666544 2111 112345666666653111111 11124555555 55
Q ss_pred CeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
||++.++ ...+|++... ++++++++++++|++++.+
T Consensus 407 Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 407 GLLVRYT-------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred CeEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 9999764 2469999765 3999999999999999864
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=128.50 Aligned_cols=348 Identities=10% Similarity=0.034 Sum_probs=191.9
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCC-CCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDY-HGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+.+||+..+ .+.+ +.+.+.+.+++..+ .+..+... .-..+.+..+|+.+.+...
T Consensus 46 D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~-------------~~~~~~~~~~~~~~~~~~lAe~L~~~~p---- 108 (461)
T PRK07482 46 DAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAK-------------ELAYYHTYVGHGTEASITLSKRIIDRAP---- 108 (461)
T ss_pred ECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHH-------------hcCccccccccCCHHHHHHHHHHHHhCC----
Confidence 4556678888654 3333 34666666665311 11111111 1123555666666654321
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCccchHHHHhhhCC--------------cEEEEEecc
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA------N-P-GDAFLVPSPYYAAFDRDLSWRTG--------------VQIVPVHCD 166 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~------~-~-Gd~vlv~~P~y~~~~~~~~~~~g--------------~~~~~v~~~ 166 (477)
-+-+++++++++++|++.+++... . + ..+|+...-+|++....+...+| +..++.|..
T Consensus 109 ~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (461)
T PRK07482 109 AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHY 188 (461)
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCcc
Confidence 124689999999999999987642 1 2 25688888888875422111111 111111210
Q ss_pred CCCC-ccc--------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 167 ISNN-FKI--------TREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 167 ~~~~-f~i--------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
.... +.. +++++++.+++. ...++.+|++.--....|.+ .+.+-+++|.++|++||+++|.||+..++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGf 266 (461)
T PRK07482 189 YRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGF 266 (461)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 0000 000 245566655421 12357776665334455766 56778999999999999999999999886
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHH---------h-cccCCCchHHH
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRK---------M-SSFGLVSSQTQ 305 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~---------~-~~~~~vs~~~q 305 (477)
.-.+..+.. +. .+..+| ++ +++|.+| .|+ .+|.+++.++ +.+.+.. . .+|+ .++++.
T Consensus 267 GRtG~~~a~--~~---~gv~PD--iv--~~gKgl~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~-gnpl~~ 334 (461)
T PRK07482 267 GRLGSMFGS--DH---YGIEPD--LI--TVAKGLT-SAYAPLSGSIVGEK-VWDVLEQGSDEHGAIGHGWTYS-GHPICA 334 (461)
T ss_pred CcCcchhhH--Hh---cCCCCC--EE--EEccccc-cCccccceeeecHH-HHHHHhcccccCCccccCCCCC-cCHHHH
Confidence 444443322 11 122344 22 5689998 885 8999988554 4443321 1 1222 456666
Q ss_pred HHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHH----hhCCCeEecCCceEEEEeeccchhhc-cCchH----HH
Q 011801 306 YLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGL----EQVGINCLKSNAGLFFWMDLRHLLKE-KTLEG----EI 373 (477)
Q Consensus 306 ~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L----~~~gi~~~~~~~g~~~~~~l~~~~~~-~~~~~----e~ 373 (477)
.++.+.|+ +.++ .++.++.-+++.+.| +++++...-..-|+++.+.+...... ..++. ..
T Consensus 335 Aaa~a~L~~~~~~~l--------~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~ 406 (461)
T PRK07482 335 AAALANLDILERENL--------VGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGP 406 (461)
T ss_pred HHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHH
Confidence 66555554 3222 112223333344444 33443323334567888887532111 11111 12
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.++..++ +.||++.++. ....+|+..+. ++++++++++++|.+++++
T Consensus 407 ~i~~~~~-~~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 407 QVSAAAL-ERGVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred HHHHHHH-HCCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3555555 5699986532 12468887654 4999999999999999875
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=127.52 Aligned_cols=348 Identities=11% Similarity=0.066 Sum_probs=185.8
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ ...+ +.+.+.+.+++.-+ .+..........+....+|+.+.+... -
T Consensus 42 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~-------------~l~~~~~~~~~~~~~~~la~~l~~~~p----~ 104 (442)
T PRK13360 42 THDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAG-------------ELDYAPAFQMGHPKAFELANRIAEIAP----G 104 (442)
T ss_pred eCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHH-------------hCCCcccCCcCCHHHHHHHHHHHHhCC----C
Confidence 4455667887543 2334 34666666655311 111111111112444556665544321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C-C-CCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccC--
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N-P-GDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDI-- 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~-~-Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~-- 167 (477)
..+++++++++++|++.+++... . + ..+|+...-+|++....+-..+|. .+..+|...
T Consensus 105 ~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~ 184 (442)
T PRK13360 105 GLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDL 184 (442)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchh
Confidence 23589999999999999887532 1 2 257999998888864322111111 111222210
Q ss_pred -CCCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 -SNNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 -~~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.+.|... .++|+++++.. ...++.+|++..-..-.|.. .+.+-+++|.++|+++|+++|+||++.++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~G 262 (442)
T PRK13360 185 ARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFG 262 (442)
T ss_pred hccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 0112111 34566666421 12356665554334556765 467779999999999999999999997653
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---------h-cccCCCchHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---------M-SSFGLVSSQTQY 306 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---------~-~~~~~vs~~~q~ 306 (477)
-.+..+. .+. .+..+| + .+|+|.+| .| +.+|.+++.++ +.+.+.. . ..|+ .++++..
T Consensus 263 rtG~~~a--~~~---~gv~PD--i--vt~gK~l~-gG~~P~gav~~~~~-i~~~~~~~~~~~~~~~~~~T~~-g~pl~~a 330 (442)
T PRK13360 263 RLGAPFA--AQY---FGVTPD--L--LTCAKGLT-NGAIPMGAVFVSSE-IHDAFMQGPEAGIEFFHGYTYS-GHPLACA 330 (442)
T ss_pred CCccchh--hhh---cCCCCc--e--eeeeeccc-cCccceEEEEEcHH-HHHHhhcCCccccccccCCCCC-CCHHHHH
Confidence 3333221 111 111334 2 38899998 67 78999988554 4443321 1 1222 3555555
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 307 ~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
++.+.|+--+ +. ...+++++.-+++.+.|+++. ... .....|++.-+.+........ ....+++..+++ +
T Consensus 331 aa~a~L~~l~--~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~-~~~~~~~~~l~~-~ 403 (442)
T PRK13360 331 AALATLDLYE--RE---GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPG-KRAYEVFLKCFE-K 403 (442)
T ss_pred HHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcc-hhHHHHHHHHHH-C
Confidence 5544443211 11 122333444445555554431 111 112335555555542111111 112345666554 5
Q ss_pred CeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
||++.++ .+.+|++.... +++++++++++|.+++++
T Consensus 404 Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 404 GLMIRYT-------GDILALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred CcEEEec-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 9999763 24699997653 999999999999999864
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=128.49 Aligned_cols=332 Identities=12% Similarity=0.138 Sum_probs=183.8
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+++.-+ ....|.. ..+....+|+.+.+...
T Consensus 95 D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~-------------~~~~~~~---~~~~~~~lAe~l~~~~p----- 153 (474)
T PLN02482 95 DVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMK-------------KGTSFGA---PCLLENVLAEMVIDAVP----- 153 (474)
T ss_pred ECCCCEEEEecccccccccCCCCHHHHHHHHHHHh-------------hCCCCCC---CCHHHHHHHHHHHHhCC-----
Confidence 4445667887544 3334 34667776666321 1122222 13555566666654321
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhh--CC-----------c------EEEEEeccCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWR--TG-----------V------QIVPVHCDIS 168 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~--~g-----------~------~~~~v~~~~~ 168 (477)
..+.+.+++++++|++.+++.-. ....+|+...-+|++....+... .| . .++.++
T Consensus 154 ~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 229 (474)
T PLN02482 154 SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP---- 229 (474)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec----
Confidence 14799999999999999887632 22367888888888864321100 01 1 011111
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
|+ |++++++.+++. ..++.+|++.--..-.|.+.+ .+.+++|.++|+++|+++|+||+..++ ..+.. ...
T Consensus 230 --~n-d~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~--ga~ 300 (474)
T PLN02482 230 --YN-DLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG--GAQ 300 (474)
T ss_pred --CC-ChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc--hHh
Confidence 11 678888887642 335666555433455676654 677999999999999999999999765 33322 112
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc------ccCCCchHHHHHHHHhcC---ChhhH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS------SFGLVSSQTQYLLASMLS---DDEFV 318 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~------~~~~vs~~~q~~~~~~L~---~~~~~ 318 (477)
+.. +..+| +.+|+|.+| .|+.+|.+++.+ .+.+.+.... .|+ .++++..++.+.|+ +.+.
T Consensus 301 ~~~---gv~PD----i~t~gK~lg-gG~Pigav~g~~-ei~~~~~~~~~~~~~~T~~-gnpl~~aAala~L~~l~~~~~- 369 (474)
T PLN02482 301 EYF---GITPD----LTTLGKVIG-GGLPVGAYGGRR-EIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLQQPGT- 369 (474)
T ss_pred HHh---CCCCC----EEEecchhh-CCCceEEEEEcH-HHHHhhccCCCcccccCcc-hhHHHHHHHHHHHHHHhccCH-
Confidence 221 12334 248899999 899999998854 4544443211 111 34444444444433 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----CCCeEe-cCCceEEEEeeccc-hh----h--ccCchHHHHHHHHHHHhcCeE
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQ----VGINCL-KSNAGLFFWMDLRH-LL----K--EKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~-~~~~g~~~~~~l~~-~~----~--~~~~~~e~~l~~~ll~~~gI~ 386 (477)
.+++.++-++|.++|.+ .|+.+. ..-.|++. +.+.. .. + ......-..+++.+++ +||+
T Consensus 370 -------~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~ 440 (474)
T PLN02482 370 -------YEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVY 440 (474)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeE
Confidence 23333344444444443 344443 23344432 22211 00 0 0011112245666664 5999
Q ss_pred EeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 387 VSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+.|.. +.. ++ +++. +++++++++++++.+++.+
T Consensus 441 ~~~~~-~~~----~~-psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 441 LAPSQ-FEA----GF-TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred EeccC-CCC----Cc-CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 98742 111 11 3444 4999999999999998864
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-12 Score=129.47 Aligned_cols=347 Identities=13% Similarity=0.129 Sum_probs=187.8
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ .+.+ +.+.+.+.+++.-+ .+..+.... ..+.+..+|+.+.+... -
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~~~~~~~-~~~~~~~lae~L~~~~p----~ 110 (451)
T PRK06062 49 DYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAA-------------RLCTVAPAH-ANDARSEAARLIAERAP----G 110 (451)
T ss_pred ECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHH-------------hcCCcCCcc-CCHHHHHHHHHHHHhCC----C
Confidence 4556678888543 3434 34566666655311 111111111 13444555555544321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcE-----------EEEEeccCC--CCcc--
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQ-----------IVPVHCDIS--NNFK-- 172 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~-----------~~~v~~~~~--~~f~-- 172 (477)
..+++++++++++|++.+++.-. ....+|+...-+|++....+...++.. +..++.+.. ..|.
T Consensus 111 ~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 190 (451)
T PRK06062 111 DLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHAT 190 (451)
T ss_pred CCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCC
Confidence 23689999999999999987632 223678888888887654332221211 112221110 0110
Q ss_pred cC-------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 173 IT-------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 173 i~-------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
-+ ++.+++.++.. ...++.+|++.--..-.|.+ .+.+-+++|.++|+++|+++|.||++.++.-.+..+
T Consensus 191 ~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~- 267 (451)
T PRK06062 191 TEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWF- 267 (451)
T ss_pred ChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHH-
Confidence 01 45566666421 12357776665334445665 467779999999999999999999998742222211
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHHh-----cccCCCchHHHHHHHHhcC---Ch
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRKM-----SSFGLVSSQTQYLLASMLS---DD 315 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~~-----~~~~~vs~~~q~~~~~~L~---~~ 315 (477)
. .+ ..+..+| +.+|+|.+| .|+ .+|.+++.++ +.+.+... ..|+ .++++..++.+.|+ +.
T Consensus 268 a-~~---~~gv~PD----i~t~gK~lg-gG~~Pigav~~~~~-i~~~~~~~~~~~~~T~~-gnpl~~Aaa~a~L~~l~~~ 336 (451)
T PRK06062 268 A-IE---HFGVVPD----LITFAKGVN-SGYVPLGGVAISEA-IAATFADRPYPGGLTYS-GHPLACAAAVATINAMEEE 336 (451)
T ss_pred H-HH---hcCCCCC----eeeechhhh-cCCcCcEEEEEcHH-HHHHhccCCCCCCCCCC-CCHHHHHHHHHHHHHHHhc
Confidence 1 11 1122344 337899998 785 9999999664 54444321 1222 45555555555553 22
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHhh----CCCeEecCCceEEEEeeccchhhccC-c-------hHHHHHHHHHHHh
Q 011801 316 EFVDNFLVETSKRLAKRH-HNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLKEKT-L-------EGEIALWRTIVND 382 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~-~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~~~~-~-------~~e~~l~~~ll~~ 382 (477)
++ .++.++.- +++.+.|++ .++...-..-|+++-+.+........ + .....+++.++ +
T Consensus 337 ~l--------~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 407 (451)
T PRK06062 337 GI--------VENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACK-E 407 (451)
T ss_pred CH--------HHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHH-H
Confidence 22 11222221 233333333 23211222345777676642110000 0 01124555555 5
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.||++.+. .+.+|++... +++++++++++++.+++++.+
T Consensus 408 ~Gvl~~~~-------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 408 RGLLPFVN-------GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CCcEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 69998652 2468998865 499999999999999997644
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-11 Score=125.72 Aligned_cols=343 Identities=15% Similarity=0.123 Sum_probs=189.3
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ ...+ +.+.+.+.+++.-+. ......+. + ..+.+..+|+.+.+..+ -
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----------~~~~~~~~-~--~~~~~~~lAe~L~~~~p----~ 112 (453)
T PRK06943 50 DRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDT----------LEHAMLAG-C--THEPAIELAERLAALTG----G 112 (453)
T ss_pred eCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHh----------cCCccccc-c--CCHHHHHHHHHHHHhCC----C
Confidence 4556678888544 3444 346666666553110 00001110 0 12344556665554322 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCC--------------cEEEEEeccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTG--------------VQIVPVHCDI 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g--------------~~~~~v~~~~ 167 (477)
.-+.+++++++++|++.+++.-. .+| .+|+...-+|++....+-..+| ...++.|...
T Consensus 113 ~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~ 192 (453)
T PRK06943 113 TLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDAR 192 (453)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcc
Confidence 12589999999999999987741 122 6789889888875422211112 2222222110
Q ss_pred CCCccc--------CHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 SNNFKI--------TREALEAAYERAQEASINIKGLIITN-PSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 ~~~f~i--------~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
...+.. +++++++.++. ...++.+|++.- ...-.|. ..+.+-+++|.++|++||+++|.||+..++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~G 269 (453)
T PRK06943 193 GARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCG 269 (453)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCC
Confidence 000110 23556666542 234787777764 2455676 4577789999999999999999999998754
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH--------h-cccCCCchHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK--------M-SSFGLVSSQTQYL 307 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~--------~-~~~~~vs~~~q~~ 307 (477)
..+..+. . +. .+..+| ++ +++|.+| .| +.+|.+++.++ +.+.... . .+|+ .++++..+
T Consensus 270 RtG~~fa-~-~~---~gv~PD--iv--t~gKgl~-gG~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~T~~-gnpl~~aa 337 (453)
T PRK06943 270 RTGTFFA-C-EQ---AGVWPD--FL--CLSKGIS-GGYLPLSLVLSRDA-IFAAFYDDDVTRGFLHSHSYT-GNPLACRA 337 (453)
T ss_pred CCcchhH-H-Hh---CCCCCC--eE--eeehhhc-cCcccceEEEEcHH-HHHhhcccCccCCccCCCCCC-CCHHHHHH
Confidence 3343221 1 11 122334 22 5689998 89 59999999655 4433321 1 1222 45566555
Q ss_pred HHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 308 LASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 308 ~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
+.+.|+ +.++ + ++.++.-++|.++|+++ ++.-. ..-|+++-+++...... .......+...++
T Consensus 338 a~a~L~~i~~~~l----~----~~~~~~G~~l~~~L~~l~~~~~v~~v-rG~Gl~~gvel~~~~~~-~~~~~~~i~~~~~ 407 (453)
T PRK06943 338 ALATLDLFAEDDV----L----ARNARKSARLRAALAPLAAHPQVRHL-RQRGTIFAFDVALDGDA-ARTFSRRFFEAAL 407 (453)
T ss_pred HHHHHHHHHhcCH----H----HHHHHHHHHHHHHHHHHhcCCCEEeE-eccccEEEEEEccCCCc-chHHHHHHHHHHH
Confidence 555554 2222 1 22223333344444332 23322 24567777777521111 1111123555555
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++||++.+.. ..+|++... ++++++++++++|++++++
T Consensus 408 -~~Gll~~~~g-------~~l~~~Ppl~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 408 -ERELLLRPIG-------TTVYLMPPYVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred -HCCcEEEecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5699997631 358998654 4999999999999999975
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.5e-12 Score=128.07 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=185.4
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+++.-+ ....+.-. .+.+..+|+.+.+..+ .
T Consensus 49 D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~---~~~~~~la~~L~~~~~----~ 108 (433)
T PRK00615 49 DSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE-------------RGTSYGLT---SEQEILFAEELFSYLG----L 108 (433)
T ss_pred ECCCCEEEEcccchhccccCCCCHHHHHHHHHHHH-------------hCCCCCCC---CHHHHHHHHHHHHhCC----C
Confidence 4455667888544 3334 34666666655311 11122111 2334445555543321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-CCC-CeEEEcCCCccchHHH---HhhhCCcEEEEEe----ccC--CC----CcccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA-NPG-DAFLVPSPYYAAFDRD---LSWRTGVQIVPVH----CDI--SN----NFKIT 174 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~-~~G-d~vlv~~P~y~~~~~~---~~~~~g~~~~~v~----~~~--~~----~f~i~ 174 (477)
..+++++++++++|++.+++.-. -.| ..|+...-+|++.... .....+....+.+ ... .. .| -|
T Consensus 109 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d 187 (433)
T PRK00615 109 EDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-ND 187 (433)
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-CC
Confidence 23689999999999999987642 233 5788888888885421 1011111000000 000 00 01 16
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 175 REALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
.+++++.+++. +.++.+|++..-..-.|... +.+-+++|.++|++||+++|+||++.++ ..+.. ...+. .
T Consensus 188 ~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~--ga~~~---~ 258 (433)
T PRK00615 188 FQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG--GAAAI---Y 258 (433)
T ss_pred HHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh--HHHHh---c
Confidence 78888887642 23566655543344457655 5667999999999999999999999765 23321 11111 1
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---cC--CCchHHHHHHHHhcC---ChhhHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---FG--LVSSQTQYLLASMLS---DDEFVDNFLVET 325 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---~~--~vs~~~q~~~~~~L~---~~~~~~~~~~~~ 325 (477)
+..+| ++ +|+|.+| .|+.+|+++++++ +.+.+..... .+ ..++++..++.+.|+ +.+. .+.+.+.
T Consensus 259 gv~PD--i~--~~gK~lg-gG~p~~av~~~~~-i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~-~~~~~~~ 331 (433)
T PRK00615 259 HVKPD--IT--VYGKILG-GGLPAAAVVAHKS-IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF-YTQLSTL 331 (433)
T ss_pred CCCCC--eE--EEccccc-CCcceeeeeecHH-HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH-HHHHHHH
Confidence 22334 22 5899998 7889999999554 4444421111 11 134555555444443 2222 1222222
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh----hcc---CchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 326 SKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL----KEK---TLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~----~~~---~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
.++++ +.+.+.+.+.|+.+.....|.++.+.+.... .+. ..+....++..+++ +||.+.|+.. +
T Consensus 332 g~~l~---~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-----~ 402 (433)
T PRK00615 332 EQNFL---SPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPF-----E 402 (433)
T ss_pred HHHHH---HHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCccc-----c
Confidence 22332 2233444444554332225677777775321 100 11122345666665 5999987532 1
Q ss_pred CEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++ ++.+ +++++++++++++.+++++
T Consensus 403 ~~~-ls~~-ht~~did~~~~a~~~~~~~ 428 (433)
T PRK00615 403 ASF-LSSA-HSMENLDYAQNVLIDSLEK 428 (433)
T ss_pred ccc-eecC-CCHHHHHHHHHHHHHHHHH
Confidence 122 4544 4999999999999999876
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-11 Score=124.25 Aligned_cols=314 Identities=16% Similarity=0.116 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCCcE--
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTGVQ-- 159 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g~~-- 159 (477)
+.+..+|+.+.+... -..+.+++++++++|++.+++.-. .+| .+|+...-+|++....+...++..
T Consensus 74 ~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~ 149 (447)
T PRK06917 74 EPAEKLAKKLSDLSP----GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLR 149 (447)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence 445556666554321 123579999999999999987651 133 678888888887654322221211
Q ss_pred ----------EEEEeccCCCC--ccc--------CHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHH
Q 011801 160 ----------IVPVHCDISNN--FKI--------TREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLV 217 (477)
Q Consensus 160 ----------~~~v~~~~~~~--f~i--------~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~ 217 (477)
+..++...... +.- +.+.+++.+++. ...++.+|++.--. +--|. ..+.+-+++|.
T Consensus 150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr 227 (447)
T PRK06917 150 RQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIK 227 (447)
T ss_pred cccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCceecCCHHHHHHHH
Confidence 11111111000 000 134555555421 11357777666323 33444 45678899999
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHHh--
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRKM-- 294 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~~-- 294 (477)
++|+++|+++|.||+..++.-.+..+.. +. .+..+| +-+++|.+| .|+ .+|.+++.++ +.+.+...
T Consensus 228 ~lc~~~g~llI~DEv~tGfGRtG~~~a~--~~---~gv~PD----i~~~gK~l~-~G~~Pi~a~~~~~~-i~~~~~~~~~ 296 (447)
T PRK06917 228 EICDHYDILFIADEVMTGLGRTGAMFAM--EH---WGVEPD----IMTLGKGLG-AGYTPIAATVVSDR-VMEPILRGSR 296 (447)
T ss_pred HHHHHcCCEEEEechhhCcCcccchhhH--Hh---cCCCCC----EEEeeehhc-cCCcceEEEEEcHH-HHHHHhccCc
Confidence 9999999999999999874333332211 11 112344 237799998 886 9999999654 44433211
Q ss_pred -----cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhh
Q 011801 295 -----SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLK 365 (477)
Q Consensus 295 -----~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~ 365 (477)
.++ ..++++..++.+.|+--+ + +...++++++-++|.+.|++ .++......-|+++.+.+.....
T Consensus 297 ~~~~~~T~-~gnpl~~aaa~a~l~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~ 370 (447)
T PRK06917 297 SIMSGHTL-SANPLSAATALAVLEYME--K---HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKK 370 (447)
T ss_pred ccccccCC-CCCHHHHHHHHHHHHHHH--H---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCC
Confidence 122 245666555555554211 0 01122333333444444433 34322223456777777742111
Q ss_pred c-cCc----hHHHHHHHHHHHhcCeEEeCCCC-CCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 366 E-KTL----EGEIALWRTIVNDVKLNVSPGSS-FQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 366 ~-~~~----~~e~~l~~~ll~~~gI~v~pg~~-f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
. +.+ +....++..++ +.||++.|+.. ......+.+|++.+.. +++++++++++|.+++++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 371 TKQPFSKSQAVASELISVAA-KNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred cCCCCcchhHHHHHHHHHHH-hCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 0 011 11223455555 46999987521 1111235799987753 9999999999999998753
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-12 Score=122.22 Aligned_cols=290 Identities=18% Similarity=0.245 Sum_probs=191.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
-...|.+.||..-+.. .-+.+++++.|+..++..++.+||.|+-..--|.+.... ++.. |+++..
T Consensus 63 T~~vlE~RiAaLEGG~----------aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~-Gi~v~f 131 (426)
T COG2873 63 TTDVLEERIAALEGGV----------AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-GIEVRF 131 (426)
T ss_pred hHHHHHHHHHHhhcch----------hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhc-CcEEEE
Confidence 3578888888876521 245567778999999999999999999888888775543 4545 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++-+ |++.+++++++ ++|+|++..-.||-+.+.+ +++|.++|+++++.+|+|...+.-++-.
T Consensus 132 vd~~-------d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~r-- 193 (426)
T COG2873 132 VDPD-------DPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLCR-- 193 (426)
T ss_pred eCCC-------CHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceecc--
Confidence 8743 68999999976 9999999999999999999 9999999999999999999886422211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH--------------------------------
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC-------------------------------- 290 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~-------------------------------- 290 (477)
+ + +.+..|+++|+||.+|=.|--+|-++.......-.
T Consensus 194 --P---~------~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~ 262 (426)
T COG2873 194 --P---I------EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIK 262 (426)
T ss_pred --h---h------hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHH
Confidence 1 1 34566899999999998888888777532111100
Q ss_pred H--HHhcccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-Ce------------------Ee
Q 011801 291 G--RKMSSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-IN------------------CL 348 (477)
Q Consensus 291 ~--~~~~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~------------------~~ 348 (477)
. .-++..+ ..|++....+..-|+. +.-+.+|..++...+.+.|+++. +. ++
T Consensus 263 ~r~~~lRDlGa~lsPfnAfl~lqGlET-------L~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl 335 (426)
T COG2873 263 ARVQLLRDLGATLSPFNAFLLLQGLET-------LSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYL 335 (426)
T ss_pred HHHHHHHhcccccCcHHHHHHHhchhh-------hHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhc
Confidence 0 0011222 2333433333333322 23334555666677788887751 11 22
Q ss_pred cCCceEEEEeeccchhhc-cCchHHHHHHHHHHH---hcCeEEeCCCCCCCC-----------CCCEEEEEeccCCHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKE-KTLEGEIALWRTIVN---DVKLNVSPGSSFQCT-----------EPGWFRVCFANMDDDTL 413 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~-~~~~~e~~l~~~ll~---~~gI~v~pg~~f~~~-----------~~~~~Rl~~~~~~~e~l 413 (477)
+...|-.+.+.+...... +.|.+..++...+.+ .+-+.+-|.+--+.. .++.+|+|++- |++
T Consensus 336 ~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI---Ed~ 412 (426)
T COG2873 336 PKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI---EDI 412 (426)
T ss_pred cCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc---CCH
Confidence 333445677777765322 234444455444332 223556676655432 36799999984 667
Q ss_pred HHHHHHHHHHHhh
Q 011801 414 QVALNRIAAFVQQ 426 (477)
Q Consensus 414 ~~~l~~l~~~~~~ 426 (477)
+.++.-|.+++++
T Consensus 413 ~DiiaDl~qAl~~ 425 (426)
T COG2873 413 DDIIADLEQALEA 425 (426)
T ss_pred HHHHHHHHHHHhc
Confidence 7778888777653
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-12 Score=125.65 Aligned_cols=264 Identities=16% Similarity=0.182 Sum_probs=161.6
Q ss_pred CCcEEEeCChHHHHHHHHHHh-cCCC-CeEEEcCCCccchHHHHhhhCC-------cE-----EEEEeccCCCCcccCHH
Q 011801 111 PDRIVMGGGATGANELIMFCL-ANPG-DAFLVPSPYYAAFDRDLSWRTG-------VQ-----IVPVHCDISNNFKITRE 176 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l-~~~G-d~vlv~~P~y~~~~~~~~~~~g-------~~-----~~~v~~~~~~~f~i~~~ 176 (477)
.+.+++++++++|++.+++.. ..+| ++|+..+-+|++....+-..++ .. +..++ |. |.+
T Consensus 81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~------~~-d~~ 153 (364)
T PRK04013 81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP------FN-DVE 153 (364)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec------CC-CHH
Confidence 358999999999999998764 2345 8899999999886543322111 11 11122 11 567
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccC
Q 011801 177 ALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~ 255 (477)
++++.+.+ ++++|++..-....|. ..+.+.+++|.++|+++|+++|+||+..++ -.+.. ...... +.
T Consensus 154 ~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~-~a~~~~----gv 221 (364)
T PRK04013 154 AAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKF-LAIEHY----KV 221 (364)
T ss_pred HHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCch-hHHHhc----CC
Confidence 77777642 7888777654444554 456778999999999999999999999875 33332 222111 11
Q ss_pred CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 256 ~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
.+| +-+++|.+| .|+.+|.++...+. .. .....+|+ .++.+..++.+.|+--+- ++.+++.++.
T Consensus 222 ~PD----iv~~gK~lg-gG~P~~a~~~~~~~-~~-~~~~~T~~-gnp~~~aaa~a~l~~i~~-~~l~~~~~~~------- 285 (364)
T PRK04013 222 EPD----IVTMGKGIG-NGVPVSLTLTNFDV-ER-GKHGSTFG-GNPLACKAVAVTLRILRR-ERLVEKAGEK------- 285 (364)
T ss_pred CCC----EEEeccccc-CCceeEEEEecccc-cC-CCcCCCCC-cCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------
Confidence 333 236699999 79999999886542 11 11112233 455555555555542110 1112222221
Q ss_pred HHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHH
Q 011801 336 FTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQ 414 (477)
Q Consensus 336 l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~ 414 (477)
+ +.+..--+.-. ..-|+++-+++... ...+.+.++ ++||++.+. +.+.+|+..... ++++++
T Consensus 286 l-~~l~~~~v~~v-RG~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~------g~~vlr~~Ppl~it~~~i~ 348 (364)
T PRK04013 286 F-IEIKGERVVTT-RGRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTA------GQRVIRLLPPLIISKDTME 348 (364)
T ss_pred H-HHhccCcceee-eeCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeC------CCCEEEEeCCcccCHHHHH
Confidence 1 12222111112 23468888888631 113555555 469998753 246799998764 999999
Q ss_pred HHHHHHHHHHhh
Q 011801 415 VALNRIAAFVQQ 426 (477)
Q Consensus 415 ~~l~~l~~~~~~ 426 (477)
+++++|.+.+++
T Consensus 349 ~~~~~l~~~l~~ 360 (364)
T PRK04013 349 EAKSAIEGVIND 360 (364)
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=127.38 Aligned_cols=332 Identities=13% Similarity=0.089 Sum_probs=182.3
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+...+..||+..+ .+.+ +.+.+.+.+.+.-+ ....+.. ..+....+|+.+.+..
T Consensus 71 D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~-------------~~~~~~~---~~~~~~~lAe~l~~~~------ 128 (453)
T PRK07046 71 DVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQAR-------------RGLTTML---PSEDAAWVGEELARRF------ 128 (453)
T ss_pred eCCCCEEEEecccccccccCCCCHHHHHHHHHHHH-------------hCCCCCC---CCHHHHHHHHHHHHHh------
Confidence 4445667887544 3333 34666666665311 1111111 1244555666555432
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhh--hCC----------c------EEEEEeccCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSW--RTG----------V------QIVPVHCDISN 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~--~~g----------~------~~~~v~~~~~~ 169 (477)
..+.+.+++++++|.+.+++.-. ...++|+...-+|++.....-. ..+ . .++.++
T Consensus 129 ~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 203 (453)
T PRK07046 129 GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE----- 203 (453)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC-----
Confidence 24789999999999999887632 2236788888888886422111 001 0 011111
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
|+ |++++++.+.. .++.+|++.--....|.+ .+.+-+++|.++|+++|+++|.||+.. +..+-.. ..+
T Consensus 204 -~n-d~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg---~~~ 272 (453)
T PRK07046 204 -FN-DLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG---YTR 272 (453)
T ss_pred -CC-CHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc---hhH
Confidence 22 67888887742 367766664223334544 456679999999999999999999986 2111111 112
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------------cccCCCchHHHHHHHHhcC---
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------SSFGLVSSQTQYLLASMLS--- 313 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------------~~~~~vs~~~q~~~~~~L~--- 313 (477)
.. +..+| + -+++|.+| .|+.+|.+++.++ +.+..... ..|+ .++++..++.+.|+
T Consensus 273 ~~---gv~PD--i--~t~gK~lg-gG~Pi~av~g~~~-i~~~~~~~~~~~~~~~~~~~~T~~-gnpl~~aa~~a~L~~l~ 342 (453)
T PRK07046 273 AH---GLEPD--F--LVVGKPIA-GGVPCAVYGFSAE-LAERAQAAKASAPPGHSGIGTTLS-ANALAMAAMRATLAEVM 342 (453)
T ss_pred Hh---CCCcc--c--eeehhhhc-CCCcceeeeehHH-HHHHHhhccccCCCCCceeCCCCc-ccHHHHHHHHHHHHHHh
Confidence 11 12334 2 26899999 8999999998554 44443210 1122 45555555555443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccc-hhhc-----c--CchHHHHHHHHHHHhcCe
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH-LLKE-----K--TLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~-~~~~-----~--~~~~e~~l~~~ll~~~gI 385 (477)
.++. -+.+.+.-+++++ .|.+.+.+.++...-..-|..+.+.+.. .... . ...-...++..+++ +||
T Consensus 343 ~~~~-~~~~~~~g~~l~~---~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv 417 (453)
T PRK07046 343 TEAA-YAHMLALAARLAA---GLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGV 417 (453)
T ss_pred cccH-HHHHHHHHHHHHH---HHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCC
Confidence 3332 1222333333332 2333334455443222223334443321 1000 0 11112245556665 599
Q ss_pred EEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.|.. +.++++.+ +++++++++++++.+++++
T Consensus 418 ~~~~~~-------~~~~~~p~-~t~~did~~~~~~~~~l~~ 450 (453)
T PRK07046 418 LITPFH-------NMMLVCPA-TTAADVDRLVAAFDACLGE 450 (453)
T ss_pred EEeccc-------CcEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 997631 34788876 6999999999999999865
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-11 Score=126.38 Aligned_cols=349 Identities=12% Similarity=0.058 Sum_probs=187.5
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+++.+.-+. ......+.. ...+.+.++|+.+.+... -
T Consensus 44 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----------~~~~~~~~~--~~~~~~~~lae~L~~~~p----~ 107 (460)
T PRK06105 44 DDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKK----------LPFYHTFSH--KSHGPVIDLAEKLVAMAP----V 107 (460)
T ss_pred ECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHh----------CCCeecccc--cCCHHHHHHHHHHHHhCC----C
Confidence 4455678998654 3444 345566666553110 000001111 123444455555544321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C-CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N-PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISN 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~-~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~ 169 (477)
+-+++++++++++|++.+++... . +| .+|+...-+|++.....-..++.. +..++.....
T Consensus 108 ~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~ 187 (460)
T PRK06105 108 PMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYY 187 (460)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccc
Confidence 23689999999999999998731 1 22 578888888877653321111211 1112211000
Q ss_pred Ccc-----------cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 170 NFK-----------ITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 170 ~f~-----------i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.+. ...+++++.+... ...++.+|++.--..-.|.. .+.+-+++|.++|+++|+++|+||++.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~G 265 (460)
T PRK06105 188 RFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFG 265 (460)
T ss_pred ccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCC
Confidence 000 0134556555421 12367776665334555665 578889999999999999999999998753
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYL 307 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~ 307 (477)
-.+..+ .. +. .+..+| +-+++|.+| .| +.+|.+++.++ +.+..... .+-...++++..+
T Consensus 266 RtG~~f-~~-~~---~~v~PD----i~~~gK~lg-gG~~P~~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~aa 334 (460)
T PRK06105 266 RTGNMF-GC-ET---FGIKPD----ILVMSKQLS-SSYQPLSAVLMNEK-VYDPIADESGKIGTFGHGFTASGHPVAAAV 334 (460)
T ss_pred cCchhh-hH-Hh---cCCCCC----eeeeecccc-cCcccceEEEEcHH-HHHHHhcccccCcccccCCCCCCCHHHHHH
Confidence 334322 21 11 122344 337899998 67 68999999654 44443321 1111245555555
Q ss_pred HHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhh---CCCeEecCCceEEEEeeccchhhcc-Cc---hH-HHHHH
Q 011801 308 LASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQ---VGINCLKSNAGLFFWMDLRHLLKEK-TL---EG-EIALW 376 (477)
Q Consensus 308 ~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~---~gi~~~~~~~g~~~~~~l~~~~~~~-~~---~~-e~~l~ 376 (477)
+.+.|+ +.++ .++.++.-++|.++|.+ .++...-..-|+++-+++....... .+ .. ...+.
T Consensus 335 a~a~L~~i~~~~l--------~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~ 406 (460)
T PRK06105 335 ALENLAIIEERDL--------VGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARAN 406 (460)
T ss_pred HHHHHHHHHhccH--------HHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHH
Confidence 444443 3332 22222333333333333 3322222344677777764211110 01 11 12355
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
..++ ++||++.|. .+.+|++... +++++++++++++.+++++.
T Consensus 407 ~~~~-~~Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 450 (460)
T PRK06105 407 AAAH-EHGVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRALDDV 450 (460)
T ss_pred HHHH-HCCeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 5555 569999863 1379999876 49999999999999999763
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-11 Score=125.86 Aligned_cols=292 Identities=13% Similarity=0.100 Sum_probs=166.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCC-
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISN- 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~- 169 (477)
.+++++++++++|++.+++.... +| .+|+...-+|++....+-..+|.. +..++.....
T Consensus 129 ~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~ 208 (472)
T PRK08742 129 LSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYL 208 (472)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccc
Confidence 35899999999999999876421 22 578888988887653322221211 1222221000
Q ss_pred -Cccc--------CHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCccc-CCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 170 -NFKI--------TREALEAAYERAQEASINIKGLIITN-PSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 170 -~f~i--------~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
.+.. +++.+++.+++ ...++.+|++.- ...-.|. ..+++-+++|.++|+++|+++|.||+..++..
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGR 285 (472)
T PRK08742 209 AEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGR 285 (472)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 0111 23455555542 234677766653 2455676 45777899999999999999999999987644
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHH--------h-cccCCCchHHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRK--------M-SSFGLVSSQTQYLL 308 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~--------~-~~~~~vs~~~q~~~ 308 (477)
.+..+.. +. .+..+| ++ +++|.+| .|+ .+|.+++.++ +.+.... . .+|+ .++++..++
T Consensus 286 tG~~~a~--e~---~gv~PD--iv--~~gKgl~-gG~~Plaav~~~~e-i~~~~~~~~~~~~~~h~~T~~-gnpl~~Aaa 353 (472)
T PRK08742 286 TGTLFAC--EQ---AGVMPD--LL--CLSKGLT-GGFLPLSAVLATQQ-LYDAFLDDSRERAFLHSHSYT-GNPLACAAA 353 (472)
T ss_pred CccchHH--Hh---cCCCCC--EE--EEccccc-CCCCCcceeeccHH-HHHHhhccCccCccCcCCCCC-ccHHHHHHH
Confidence 4433221 11 122334 22 5689998 884 9999999554 4333321 0 1222 455555555
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccC-chHH----HHHHHHHHHhc
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKT-LEGE----IALWRTIVNDV 383 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~-~~~e----~~l~~~ll~~~ 383 (477)
.+.|+--+ ++.+.++.+++.++...+.+.+.++.+-..-..-|+++-+.+.......+ +..+ ..+.+.++ +.
T Consensus 354 ~a~L~~i~--~~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 430 (472)
T PRK08742 354 LATLDIFA--DDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAAL-AR 430 (472)
T ss_pred HHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHH-HC
Confidence 55554211 11122222222333233444444444321223456788887753211111 1111 23444455 56
Q ss_pred CeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
||++.+. .+.+|+..... +++++++++++|.+.+++.
T Consensus 431 Gll~~~~-------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 431 GVVLRPL-------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred CeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999763 14799988764 9999999999999999763
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-12 Score=134.99 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..+..+..|+.++ .....++++|+|.++.+++.+++.+||.|||+.-++-.....+.+. |++.+.+...-
T Consensus 207 I~eAq~~aA~~fg---------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~-ga~Pvyl~P~~ 276 (755)
T PRK15029 207 FGESEKYAARVFG---------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILT-GAKPVYMVPSR 276 (755)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 5677777777776 2356889999999999999999999999999999999998888877 99988886432
Q ss_pred CCCcc----cC-----HHHHHHHHHHHHH----hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 168 SNNFK----IT-----REALEAAYERAQE----ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 168 ~~~f~----i~-----~~~l~~~~~~~~~----~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
+.++ ++ ++.+++++++... .+.+++++++++| +-.|.+.+ +++|++.|+++++.|++||+|.
T Consensus 277 -~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~d---i~~I~~~~h~~~~~llvDEAhG 351 (755)
T PRK15029 277 -NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeC---HHHHHHHHHhcCCeEEEECccc
Confidence 2332 34 8899999875421 2345669999998 56899999 8889999999999999999998
Q ss_pred ccc-cCCCCcccHHHhhhhccCCCCc-EEEEecCCcccCCCCceEE-EEEe
Q 011801 235 ATV-FSSPKFTSVAEVIQEMDCNRDL-IHIIYSLSKDMGLPGFRVG-IVYS 282 (477)
Q Consensus 235 ~~~-~~~~~~~s~~~~~~~~~~~~~~-viiv~SlSK~~g~~G~RvG-~i~~ 282 (477)
+.. |.. .+.....+-.+.....+. ++++.|.+|.+ |++.-| +|..
T Consensus 352 ah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 352 GYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred cccccCc-cccccccccccccccCCCceEEEEchhhcc--cchhhhhhhee
Confidence 752 332 222111110000000123 48899999998 666655 4555
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-11 Score=124.48 Aligned_cols=341 Identities=12% Similarity=0.050 Sum_probs=187.6
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCC-CCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDY-HGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+++.-+ .+. |... .-..+.+..+|+.+.+..+
T Consensus 39 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~-------------~~~-~~~~~~~~~~~~~~la~~L~~~~p---- 100 (428)
T PRK07986 39 LADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID-------------AMS-HVMFGGITHPPAIELCRKLVAMTP---- 100 (428)
T ss_pred eCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHh-------------hcC-CccccccCCHHHHHHHHHHHhhCC----
Confidence 3445667887543 3333 34667776665321 111 1100 0012445556665554321
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc-------CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA-------NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS 168 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~-------~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~ 168 (477)
-..+++++++++++|++.+++... ....+|+...-+|++....+...++. .++.++....
T Consensus 101 ~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (428)
T PRK07986 101 QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQS 180 (428)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCc
Confidence 123689999999999999887632 12367999998888754222111121 0111221100
Q ss_pred ---CCc-ccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 169 ---NNF-KITREALEAAYERAQEASINIKGLIITNP-SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 169 ---~~f-~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
..| .-|++++++.++. .+.++.+|++... +.-.|. ..+.+.+++|.++|+++|+++|+||++.++.-.+..
T Consensus 181 ~~~~~~~~~d~~~l~~~l~~---~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~ 257 (428)
T PRK07986 181 RFDGEWDERDIAPFARLMAA---HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKL 257 (428)
T ss_pred ccchhhHHHHHHHHHHHHHh---CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCe
Confidence 001 1145666666653 2335666555532 444565 446788999999999999999999999764333332
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhcC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L~ 313 (477)
+.. +. .+..+| ++ +|+|.+| .| +.+|.++++++ +.+.+... .+|+ .++++.+++.+.|+
T Consensus 258 fa~--~~---~gv~PD--i~--t~gK~l~-gG~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~L~ 325 (428)
T PRK07986 258 FAC--EH---AGIAPD--IL--CLGKALT-GGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFM-GNPLACAVANASLS 325 (428)
T ss_pred eee--cc---cCCCCC--EE--Eechhhh-CCcccCcchhchHH-HHHHhhcCCCCccccCCCCC-cCHHHHHHHHHHHH
Confidence 211 11 111333 33 6899998 88 58888888554 44444321 2222 45555555555443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
--+ +. +..++++++-+++.+.|+++ ..... -...|+++-+.+..... ...++..++ ++||.+.+.
T Consensus 326 ~i~--~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~------~~~~~~~l~-~~Gl~~~~~ 393 (428)
T PRK07986 326 LLE--SG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVN------MAALQRFFV-EQGVWIRPF 393 (428)
T ss_pred HHH--hC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCccc------HHHHHHHHH-HCCcEEEec
Confidence 211 00 12233334444455555443 11111 12346777777753211 123555555 569999864
Q ss_pred CCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 391 SSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
. ..+|++.... +++++++++++|.+++.+
T Consensus 394 g-------~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 394 G-------KLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred C-------CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 3799987654 999999999999999865
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-11 Score=123.68 Aligned_cols=291 Identities=12% Similarity=0.120 Sum_probs=156.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCCCe-EEEcCCCccchHHHHhhhCCcE-----------EEEEeccC--CC
Q 011801 111 PDRIVMGGGATGANELIMFCLA-------NPGDA-FLVPSPYYAAFDRDLSWRTGVQ-----------IVPVHCDI--SN 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-------~~Gd~-vlv~~P~y~~~~~~~~~~~g~~-----------~~~v~~~~--~~ 169 (477)
.+.+++++++++|++.+++... ++++. |+...-+|++.....-..+|.+ +..++... ..
T Consensus 115 ~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~ 194 (460)
T PRK12403 115 YSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYAN 194 (460)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCccccc
Confidence 3689999999999999998763 23333 4455567776532221111221 22222110 00
Q ss_pred CcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 170 NFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 170 ~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
++.+. .+.+++.+.+. ...++.+|++.--..-.|.+ .+.+-+++|.++|++||+++|+||+..++.-.+
T Consensus 195 ~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG 272 (460)
T PRK12403 195 GGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG 272 (460)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc
Confidence 01111 23444444321 12356666654334455765 466779999999999999999999997653333
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHHh-------cccCCCchHHHHHHHHhc
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRKM-------SSFGLVSSQTQYLLASML 312 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~~-------~~~~~vs~~~q~~~~~~L 312 (477)
..+.. +. .+..+| ++ +++|.+| .|+ .+|.+++.+ .+.+.+... .+|+ .++.+..++.+.|
T Consensus 273 ~~~a~--e~---~gv~PD--iv--~~gK~lg-gG~~Piga~v~~~-~i~~~~~~~~~~~~~~~T~~-gnPl~~Aaala~L 340 (460)
T PRK12403 273 EWFAH--EH---FGFEPD--TL--SIAKGLT-SGYVPMGGLVLSK-RIAEALVEQGGVFAHGLTYS-GHPVAAAVAIANL 340 (460)
T ss_pred hhhhh--hh---cCCCCC--eE--EEccccc-ccccceEEEEECH-HHHHHHhcCCCccccCCCCC-CCHHHHHHHHHHH
Confidence 32211 11 122333 33 5899998 785 999998854 454444211 1222 4555555555555
Q ss_pred C---ChhhHHHHHH-HHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc-cCchH----HHHHHHHHHHhc
Q 011801 313 S---DDEFVDNFLV-ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE-KTLEG----EIALWRTIVNDV 383 (477)
Q Consensus 313 ~---~~~~~~~~~~-~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~-~~~~~----e~~l~~~ll~~~ 383 (477)
+ +.+++ +.+. +..+++++ .|.+..++.++...-..-|+++.+.+...... ..+.. ...++..++ +.
T Consensus 341 ~~i~~~~l~-~~~~~~~g~~l~~---~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 415 (460)
T PRK12403 341 KALRDEGVV-TRVKDDTGPYLQR---CLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGF-EE 415 (460)
T ss_pred HHHHhccHH-HHHHHHHHHHHHH---HHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHH-hC
Confidence 3 22221 1111 22222222 22222233443222334567887877531110 11111 112223334 56
Q ss_pred CeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
||.+.+.. +.+|++.+.. ++++++++++++.+++.+.
T Consensus 416 Gll~~~~~-------~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 416 GVIIRSTL-------GRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred CEEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99997531 3488988764 9999999999999999764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-11 Score=134.66 Aligned_cols=309 Identities=15% Similarity=0.139 Sum_probs=184.9
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC-ChHHHHHHHHHHh----cCCCC----eEEEcCCCccchHHHHhhhC
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG-GATGANELIMFCL----ANPGD----AFLVPSPYYAAFDRDLSWRT 156 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~-G~t~al~~i~~~l----~~~Gd----~vlv~~P~y~~~~~~~~~~~ 156 (477)
+|..++...+.+++.+..| . +++.+.. |+++|....+.++ .++|+ .|++++-.|+.....+...
T Consensus 538 qG~l~~i~e~q~~l~eltG----~--d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~- 610 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITG----Y--DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA- 610 (954)
T ss_pred HHHHHHHHHHHHHHHHHHC----C--CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC-
Confidence 4566788888888887766 2 3555544 5656554433332 25666 5999999997776677766
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|++++.++++.. ..+|+++|++++++. +.++.+|++++|++-.+...+ +++|+++|+++|+++++|.++...
T Consensus 611 G~~vv~v~~d~~--G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 611 GMKVVVVACDEN--GNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred CCEEEEECCCCC--CCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhh
Confidence 999999998743 479999999988642 236888899999876444456 899999999999999999999632
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC----CCCceEEEEEeCCHHHHHHHHHh--------cccCCCc--h
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG----LPGFRVGIVYSFNDTVVNCGRKM--------SSFGLVS--S 302 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g----~~G~RvG~i~~~~~~i~~~~~~~--------~~~~~vs--~ 302 (477)
...- .+.. ..+..+++.|++|.|+ ..|-.+|.+++.. .+...+... ...+.++ .
T Consensus 683 l~~l---~~pg--------~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~g~v~ta~ 750 (954)
T PRK05367 683 QVGL---ARPG--------DIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGIGAVSAAP 750 (954)
T ss_pred ccCC---CChh--------hcCCCEEEecCcccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCcCcchhHH
Confidence 1211 1111 1234477889999975 2345588888743 222211110 0012222 2
Q ss_pred HHHHHHH----HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE--EEEeeccchhhccCchHHHHH
Q 011801 303 QTQYLLA----SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL--FFWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 303 ~~q~~~~----~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~--~~~~~l~~~~~~~~~~~e~~l 375 (477)
..|..++ .++..-. .+-+++..++.-.+.+++.+.|++. ++.+..+.+-. =+.++++......... ..++
T Consensus 751 ~g~al~~~~a~~yi~~~G--~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~-~~di 827 (954)
T PRK05367 751 FGSASILPISWMYIRMMG--AEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGIT-VDDI 827 (954)
T ss_pred HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCCC-HHHH
Confidence 2222111 1111111 1224444444446677888888663 33332221100 1234443221111112 2357
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+++ .++|+...- ..|. .++.+||++.-. +.+++|+++++|+.+.++..
T Consensus 828 ~krL-~d~G~~~~t-~~~p--v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 828 AKRL-IDYGFHAPT-MSFP--VAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred HHHH-HHCCCeEee-cCCc--cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 7777 466998643 3342 367899988765 89999999999998876544
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-11 Score=121.24 Aligned_cols=339 Identities=12% Similarity=0.127 Sum_probs=182.9
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+.+++.-+ ....+... .+....+|+.+.+...
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~~~~~~---~~~~~~la~~l~~~~p----- 107 (428)
T PRK12389 49 DVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE-------------NGVLYGTP---TELEIEFAKMLKEAIP----- 107 (428)
T ss_pred eCCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hCCccCCC---CHHHHHHHHHHHHhCC-----
Confidence 4556667888544 3334 34666666665321 11111111 2334555555543221
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEE--------Eecc-CCCCcc---cCH
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVP--------VHCD-ISNNFK---ITR 175 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~--------v~~~-~~~~f~---i~~ 175 (477)
..+++++++++++|++.+++.-. ....+|+...-+|++....+...+|..... ++.. ..+... -|+
T Consensus 108 ~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 187 (428)
T PRK12389 108 SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDI 187 (428)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCH
Confidence 24689999999999999987532 223678888888888654332221211100 0000 000000 167
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhcc
Q 011801 176 EALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~ 254 (477)
+++++.+++. +.++.+|++.--..-.|.+. +.+.+++|.++|+++|+++|+||++.++.. .+....+.. +
T Consensus 188 ~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt---~~~~a~~~~---g 258 (428)
T PRK12389 188 EALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRF---MYGGAQDLL---G 258 (428)
T ss_pred HHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccccc---CcchhhHHh---C
Confidence 8888887642 23576666654355567655 677899999999999999999999987521 111111111 1
Q ss_pred CCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----h-cccCCCchHHHHHHHHhcC---ChhhHHHHHHHH
Q 011801 255 CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----M-SSFGLVSSQTQYLLASMLS---DDEFVDNFLVET 325 (477)
Q Consensus 255 ~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~-~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~ 325 (477)
..+| + -+++|.+| .|+.+|.+++++ .+.+.+.. . ..| ..++++..++.+.|+ +.++
T Consensus 259 v~PD--i--vt~gK~lg-gG~Pi~av~~~~-~i~~~~~~~~~~~~~~T~-~gnpl~~Aaala~L~~l~~~~l-------- 323 (428)
T PRK12389 259 VEPD--L--TALGKIIG-GGLPIGAYGGRK-DIMEQVAPLGPAYQAGTM-AGNPASMAAGIACLEVLQQEGV-------- 323 (428)
T ss_pred CCCC--e--eeechhhc-CCCceeEEeEHH-HHHhhhccCCCcccccCC-ccCHHHHHHHHHHHHHHhcccH--------
Confidence 2334 2 38899998 899999998854 44444321 1 122 245555555555543 3232
Q ss_pred HHHHHHHHHHHHHHHhh----CCCeEec-CCceEEEEeeccch-hhc------cCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 326 SKRLAKRHHNFTKGLEQ----VGINCLK-SNAGLFFWMDLRHL-LKE------KTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~----~gi~~~~-~~~g~~~~~~l~~~-~~~------~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
.+++++.-++|.+.|++ .++.... ...|++ -+.+... ... ........++..++ ++||.+.+..
T Consensus 324 ~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-- 399 (428)
T PRK12389 324 YEKLDRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLML-NQGINLAPSK-- 399 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHH-HCCcEeecCC--
Confidence 22233333344444432 4432211 223443 2333211 000 00011124455555 5699998752
Q ss_pred CCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 394 QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+.+++. +++++++++++++++++++
T Consensus 400 ----~~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 400 ----YEAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred ----CCCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 112345543 4999999999999998864
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-11 Score=121.52 Aligned_cols=309 Identities=13% Similarity=0.080 Sum_probs=169.3
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCc---
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGV--- 158 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~--- 158 (477)
+.+..+|+.+.+..+ +-.-+++++++++++|++.+++.-.. +| .+|+...-+|++....+...++.
T Consensus 86 ~~~~~lae~L~~~~~---~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 162 (449)
T PRK07481 86 PRAIELSYELIDMFA---PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF 162 (449)
T ss_pred HHHHHHHHHHHHhcC---CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence 444555555544321 01235899999999999999876321 33 57888888888754322111111
Q ss_pred ---------EEEEEeccCC--CCcc-cCHHHHHHHHH----HHH--HhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHH
Q 011801 159 ---------QIVPVHCDIS--NNFK-ITREALEAAYE----RAQ--EASINIKGLIITNPSNPLGTT-LDRDTLKSLVSF 219 (477)
Q Consensus 159 ---------~~~~v~~~~~--~~f~-i~~~~l~~~~~----~~~--~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~ 219 (477)
.+..++.+.. ..|. -|.+++++.+. +.. ....++.+|++.--..-.|.. .+.+-+++|.++
T Consensus 163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l 242 (449)
T PRK07481 163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV 242 (449)
T ss_pred ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence 1122221110 0122 13444443332 111 112467776665434455664 567779999999
Q ss_pred HHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-----
Q 011801 220 INDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK----- 293 (477)
Q Consensus 220 ~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~----- 293 (477)
|+++|+++|.||+..++...+..+.. +. .+..+| + -+++|.+| .| +.+|.+++.++ +.+....
T Consensus 243 c~~~g~llI~DEV~tGfGRtG~~~a~--~~---~gv~PD--i--v~~gKgl~-gG~~Pi~av~~~~~-i~~~~~~~~~~~ 311 (449)
T PRK07481 243 CDRHGILLIADEVVTGFGRTGSWFGS--RG---WGVKPD--I--MCLAKGIT-SGYVPLGATMVNAR-IADAFEANADFG 311 (449)
T ss_pred HHHcCCEEEEeehhhCcCcCchhhHh--hh---cCCCCC--E--EEEeeccc-CCCcCceEEEEcHH-HHHHHhccCccc
Confidence 99999999999999875333332211 11 122344 2 26689998 78 59999999654 4444321
Q ss_pred ----h-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchh
Q 011801 294 ----M-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLL 364 (477)
Q Consensus 294 ----~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~ 364 (477)
. .+|+ .++++..++.+.|+--+ ++ ...++.++.-+++.+.|++ .++......-|+++.+++....
T Consensus 312 ~~~~h~~T~~-gnpl~~aaa~a~L~~l~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~ 385 (449)
T PRK07481 312 GAIMHGYTYS-GHPVACAAALATLDIVV--RE---DLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADK 385 (449)
T ss_pred cccccCCCCC-CCHHHHHHHHHHHHHHH--hh---hHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccc
Confidence 0 1222 45666555555553211 11 1112223333334444433 3332222345678888774321
Q ss_pred hcc-Cc----hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 365 KEK-TL----EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 365 ~~~-~~----~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
... .. .....+...++ +.||++.+.. ..+|++.+. ++++++++++++|.+++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 386 ATREPIDPSKGYANAVADVAR-ENGVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred cccCCCCchhHHHHHHHHHHH-hCCeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 111 00 11123445554 4699998642 248998765 4999999999999999975
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=127.47 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=178.6
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC-----C---CC------eEEEcCCCccchHH
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN-----P---GD------AFLVPSPYYAAFDR 150 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~-----~---Gd------~vlv~~P~y~~~~~ 150 (477)
+.+..++.+.+.+++.+..+.. +.-.-.+|.|+|+|+.+.+.+... . +. .|+++.-++..+..
T Consensus 96 ~p~a~~~E~~~v~~l~~l~~~~---~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~K 172 (460)
T COG0076 96 SPAAAELEERVVNMLSDLLGAP---EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEK 172 (460)
T ss_pred ChhHHHHHHHHHHHHHHHhCCC---CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHH
Confidence 4478899999999999987732 334578899999999987766421 1 11 68899989999999
Q ss_pred HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee-EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 151 DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK-GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 151 ~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k-~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
.++.. |++...++.+.. ++++|+++|++++.+. .+. +|+-+-++.+||.+=+ +++|.++|+++++++++
T Consensus 173 aa~~l-G~~~~~v~~~~~-~~~id~~~l~~~i~~~-----t~~g~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHV 242 (460)
T COG0076 173 AARYL-GLGLRRVPTVPT-DYRIDVDALEEAIDEN-----TIGGVVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHV 242 (460)
T ss_pred HHHHh-CCCceeEEeccC-ccccCHHHHHHHHHhh-----ccCceEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEE
Confidence 98887 999999998765 7899999999999874 222 3666777889999877 88899999999999999
Q ss_pred ccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH-HHHHHHHHhcccCC-------
Q 011801 230 DEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND-TVVNCGRKMSSFGL------- 299 (477)
Q Consensus 230 De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~-~i~~~~~~~~~~~~------- 299 (477)
|.+|++++. ..+... .. .. .+...-+.-+++|.. +..+.+||++..++ .+.+......+++.
T Consensus 243 DAA~GG~~~pf~~~~~~--~~-f~----l~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ 314 (460)
T COG0076 243 DAAFGGFLLPFLEPDGR--WD-FG----LEGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNF 314 (460)
T ss_pred EccccceeecccCccch--hh-cC----CCCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccccCCCCCcCce
Confidence 999998643 222211 00 10 223344567999965 58889999999887 45554443222221
Q ss_pred ---Cc-----hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccc
Q 011801 300 ---VS-----SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRH 362 (477)
Q Consensus 300 ---vs-----~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~ 362 (477)
.+ .+.+++....+.-+. +++..++..+..+++.+.|++.| +++........+.+++++
T Consensus 315 ti~~sr~~~~~~~~~~~l~~lG~eG-----y~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 315 TILGSRPGRQALALYANLRRLGREG-----YRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred eEeeccchHHHHHHHHHHHHhCHhH-----HHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 11 133444444443333 35566667788899999999986 787765555677778754
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-11 Score=133.10 Aligned_cols=352 Identities=13% Similarity=0.153 Sum_probs=189.7
Q ss_pred CCCcccccccccccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 35 QNPGGVIQLGLAENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
.+.+.+||+..+...++ .+.+.+.+.+.-.. ......|. +....+|.+.+++.+- -..+
T Consensus 582 ~dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~----------l~~~~~~~-~~~~~elae~L~~~~p--------~~~~ 642 (972)
T PRK06149 582 MAGRSYLDMVNNVTVLGHGHPRLAAAAARQWSL----------LNTNSRFH-YAAVAEFSERLAALAP--------DGLD 642 (972)
T ss_pred CCCCEEEECCCCccccCCCCHHHHHHHHHHHHh----------cccccccc-CHHHHHHHHHHHHhCC--------CCcC
Confidence 34566788875544443 45566655442110 00111121 1122344444444431 1236
Q ss_pred cEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhhhCC-----c--------EEEEEeccC--CCCccc-
Q 011801 113 RIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSWRTG-----V--------QIVPVHCDI--SNNFKI- 173 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~~~g-----~--------~~~~v~~~~--~~~f~i- 173 (477)
.+++++++++|++.+++. +.+ ...|+...-+|++.........+ . .+.+++... ...|.-
T Consensus 643 ~v~f~~SGsEA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~ 721 (972)
T PRK06149 643 TVFLVNSGSEANDLAIRLAWAASG-RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGA 721 (972)
T ss_pred EEEEeCCchHHHHHHHHHHHHhcC-CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCc
Confidence 899999999999999874 333 35688888888764422110000 0 112222211 011221
Q ss_pred C-----HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 174 T-----REALEAAYERAQEASINIKGLIITNP-SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 174 ~-----~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+ .+++++.++.....+.++.+||+.-- ++-.....+++-+++|.++|++||+++|+||+..++.-.+..+....
T Consensus 722 ~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e 801 (972)
T PRK06149 722 DSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFE 801 (972)
T ss_pred ccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhh
Confidence 1 24555555443333446766655422 34333556777899999999999999999999977544443333221
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH----hcccCCCchHHHHHHHHhcC---ChhhHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----MSSFGLVSSQTQYLLASMLS---DDEFVDN 320 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----~~~~~~vs~~~q~~~~~~L~---~~~~~~~ 320 (477)
. .+..+| ++ +++|.+| .|+.+|.+++.++ +.+.+.. .+++ ..++.+..++.+.|+ +.++ .+
T Consensus 802 ~----~gv~PD--iv--t~gK~lg-~G~Pl~av~~~~~-i~~~~~~~~~~~sT~-~gnP~~~aaala~L~~i~~e~l-~~ 869 (972)
T PRK06149 802 Q----QGVVPD--II--TMAKGMG-NGHPLGAVITRRE-IAEALEAEGYFFSST-GGSPVSCRIGMAVLDVLREEKL-QE 869 (972)
T ss_pred h----cCCCCC--EE--Eeccccc-CCeeeEEEEEcHH-HHhhhccCCcccCCC-CCCHHHHHHHHHHHHHHHhcCH-HH
Confidence 1 122334 22 8899999 8999999999554 4444432 1223 245666665555553 2222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
...+.-++++++.+.+ ..+.++...-..-|+++-+++...... ...+....++..+++ .||.+.|... ..
T Consensus 870 ~~~~~G~~l~~~L~~l---~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~~~g~----~~ 941 (972)
T PRK06149 870 NARRVGDHLKARLEAL---ADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQPTGD----HL 941 (972)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEeecCC----CC
Confidence 2222223333322222 122343222234568888877421111 111112245555554 5999987422 23
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|+.... ++++++++++++|.+++.+
T Consensus 942 ~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 942 NILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 578987764 4999999999999999864
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-11 Score=123.27 Aligned_cols=352 Identities=11% Similarity=0.024 Sum_probs=189.2
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ ...+ ..+.+.+.+++.-+. ......+.. ...+.+..+|+.+.+... -
T Consensus 47 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----------~~~~~~~~~--~~~~~~~~lae~L~~~~p----~ 110 (466)
T PRK07036 47 DADGRRYLDGIGGMWCVNVGYGREEMADAIADQARR----------LPYYTPFGD--MTNAPAAELAAKLAELAP----G 110 (466)
T ss_pred ECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHh----------Ccccccccc--cCCHHHHHHHHHHHHhCC----C
Confidence 4455667887544 2334 346666666553110 000111210 123455666666654321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc------C-CC-CeEEEcCCCccchHHHHhhhCCc------------EEEEEeccC--
Q 011801 110 DPDRIVMGGGATGANELIMFCLA------N-PG-DAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDI-- 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~------~-~G-d~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~-- 167 (477)
.-+.+++++++++|++.+++... + +| .+|+...-+|++....+...+|. .+..++...
T Consensus 111 ~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (466)
T PRK07036 111 DLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPY 190 (466)
T ss_pred CcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccc
Confidence 23589999999999999887631 1 22 57888888888754332111121 122222211
Q ss_pred CCCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 168 SNNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 168 ~~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
...+..+ .+.+++.+.. ....++.+|++.--..-.|.. .+++-+++|.++|++||+++|.||+..++.-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 268 (466)
T PRK07036 191 RRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGR 268 (466)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCc
Confidence 0011121 1233333332 123467777766445555764 5677799999999999999999999987533
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh----------cccCCCchHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM----------SSFGLVSSQTQYL 307 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~----------~~~~~vs~~~q~~ 307 (477)
.+.. ...... .+..+| + -+++|.+| .| +.+|.+++.++ +.+..... .+|+ .++++..+
T Consensus 269 tG~~-~~~~~~---~gv~PD--i--vt~gK~l~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~~~~T~~-gnpl~~aa 337 (466)
T PRK07036 269 LGHF-FASEAV---FGIQPD--I--ITFAKGLT-SGYQPLGAVIISER-LLDVISGPNAKGNVFTHGFTYS-GHPVACAA 337 (466)
T ss_pred Cchh-hhhhhh---cCCCCC--E--EEEccccc-cCccccEEEEEcHH-HHHHHhcccCcCcccccCCCCC-CCHHHHHH
Confidence 2322 121111 122344 2 37799998 88 49999999554 44433211 1222 45666565
Q ss_pred HHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc-Cc--h--HHHHHHHHH
Q 011801 308 LASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK-TL--E--GEIALWRTI 379 (477)
Q Consensus 308 ~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~-~~--~--~e~~l~~~l 379 (477)
+.+.|+ +.++ -+...+..+++++..+ .+.+.++...-..-|+++.+.+....... .+ + ....++..+
T Consensus 338 a~a~Le~i~~~~l-~~~~~~~g~~l~~~L~----~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T PRK07036 338 ALKNIEIMEREGL-CEHVREVGPYFEERLA----SLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHC 412 (466)
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHHHHH----HhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHH
Confidence 555553 2222 1223333333332221 23333432223345678888885321111 00 1 112355555
Q ss_pred HHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 380 VNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+ +.||++.|.. +.+|++... ++++++++++++|.+++++.
T Consensus 413 ~-~~Gvl~~~~~-------~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 413 Q-ERGLLVRPLE-------HLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred H-HCCcEEeecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5 5699997631 357888765 49999999999999998764
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-11 Score=135.43 Aligned_cols=353 Identities=11% Similarity=0.064 Sum_probs=191.4
Q ss_pred CCCcccccccccccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 35 QNPGGVIQLGLAENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
.+.+..||+..+...++ .+.+.+.+++.-+. ......|. .+....+|+.+.+... -.-+
T Consensus 621 ~dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~----------l~~~~~~~-----~~~~~~lAe~L~~~~p----~~~~ 681 (1013)
T PRK06148 621 NRGRAYLDCFNNVCHVGHAHPRVVAAAARQAAR----------LNTNTRYL-----HDAIVAYAERLTATLP----DGLT 681 (1013)
T ss_pred CCCCEEEEcccChhhcCCCCHHHHHHHHHHHhh----------cCCcCCcC-----CHHHHHHHHHHHHhCC----CCcC
Confidence 44566788866554453 46677766653211 00011221 2334445554443211 1236
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC--------------cEEEEEeccCCCCccc-C-
Q 011801 113 RIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG--------------VQIVPVHCDISNNFKI-T- 174 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g--------------~~~~~v~~~~~~~f~i-~- 174 (477)
.+++++++++|++.+++.-. ....+|+...-+|++....+...++ +..++.|......|.. +
T Consensus 682 ~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 761 (1013)
T PRK06148 682 VAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDA 761 (1013)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChh
Confidence 79999999999999987642 2235788888888876432111111 1111111000011221 1
Q ss_pred ------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 175 ------REALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 175 ------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.+.+++.++.....+.++.+||+.--..-.|. ..+.+-+++|.++|+++|+++|.||+..++.-.+..+....
T Consensus 762 ~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e 841 (1013)
T PRK06148 762 EHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFE 841 (1013)
T ss_pred hhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhh
Confidence 13456555433233446777665532333454 55777899999999999999999999987543343222211
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH----hcccCCCchHHHHHHHHhcC---ChhhHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----MSSFGLVSSQTQYLLASMLS---DDEFVDN 320 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----~~~~~~vs~~~q~~~~~~L~---~~~~~~~ 320 (477)
. .+..+| +-+++|.+| .|+.+|.+++.+ .+.+.... ..+|+ .++++..++.+.|+ +.++ .+
T Consensus 842 ~----~gv~PD----ivt~gK~lg-gG~Plgav~~~~-ei~~~~~~g~~~~~Tf~-gnpla~aaa~a~L~~i~~e~l-~~ 909 (1013)
T PRK06148 842 T----QGVVPD----IVTMGKPIG-NGHPMGAVVTTR-EIADSFDNGMEYFNTFG-GNPVSCAIGLAVLDIIEDEDL-QR 909 (1013)
T ss_pred h----cCCCcc----eeeeccccc-CCcceEEEEEcH-HHHhhccCCCccccCCC-CCHHHHHHHHHHHHHHhhccH-HH
Confidence 1 111333 237799999 899999999954 44443321 12333 45565555555543 3332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCc--hHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL--EGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~--~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
...+.-++++++.+.+. ++.++...-..-|+++-+.+......... +....++..++ ++||++.+.... .
T Consensus 910 ~~~~~G~~l~~~L~~l~---~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g~~----~ 981 (1013)
T PRK06148 910 NALEIGNYLLAGLRELQ---DRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGAR-ERGILIGTEGPH----D 981 (1013)
T ss_pred HHHHHHHHHHHHHHHHH---HhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHH-hCCeEEeccCCC----C
Confidence 23333333333322222 22333222234568888877532111111 11123555555 469999764221 3
Q ss_pred CEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
..+|+..... +++++++++++|.+++.+
T Consensus 982 ~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 982 NVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 6799988764 999999999999999865
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-11 Score=122.03 Aligned_cols=303 Identities=12% Similarity=0.074 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc------C-CC-CeEEEcCCCccchHHHHhhhCCcE--
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA------N-PG-DAFLVPSPYYAAFDRDLSWRTGVQ-- 159 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~------~-~G-d~vlv~~P~y~~~~~~~~~~~g~~-- 159 (477)
+.+..+|+.+.+... -..+.+++++++++|++.+++... . +| .+|+...-+|++....+...+|..
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 165 (466)
T PRK07030 90 EPVIELSERLVKITP----PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF 165 (466)
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence 445555665543221 123689999999999999987641 1 23 578888888887653322211211
Q ss_pred ----------EEEEeccCC--CCccc--------CHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCccc-CCCHHHHHHHH
Q 011801 160 ----------IVPVHCDIS--NNFKI--------TREALEAAYERAQEASINIKGLIITN-PSNPLGT-TLDRDTLKSLV 217 (477)
Q Consensus 160 ----------~~~v~~~~~--~~f~i--------~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~-~~~~~~l~~l~ 217 (477)
+..+|.... ..+.. +++++++.+++ .+.++.+|++.- ...-.|. ..+.+-+++|.
T Consensus 166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr 242 (466)
T PRK07030 166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR 242 (466)
T ss_pred cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence 122221110 00111 23445555542 234677776663 2444565 45677899999
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK--- 293 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~--- 293 (477)
++|+++|+++|.||+..++...+..+.. +.. +..+| ++ +++|.+| .| +.+|.+++.++ +.+....
T Consensus 243 ~lc~~~g~llI~DEV~TGfGRtG~~~a~--~~~---gv~PD--iv--~~gKgl~-gG~~Pi~av~~~~e-i~~~~~~~~~ 311 (466)
T PRK07030 243 EACDRYGVHLIHDEIAVGFGRTGTMFAC--EQA---GIRPD--FL--CLSKALT-GGYLPLAAVLTTDT-VYQAFYDDYP 311 (466)
T ss_pred HHHHHcCCEEEEeehhhCcCccccchHH--Hhc---CCCCC--EE--eeehhcc-CCcccceEEEecHH-HHHHHhcccc
Confidence 9999999999999999875433432211 111 12334 22 5689998 89 49999999555 4333321
Q ss_pred -------hcccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhh---CCCeEecCCceEEEEeec
Q 011801 294 -------MSSFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQ---VGINCLKSNAGLFFWMDL 360 (477)
Q Consensus 294 -------~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~---~gi~~~~~~~g~~~~~~l 360 (477)
..+|+ .++++..++.+.|+ +.++ .++.++.-+++.+.|++ ...-..-..-|+++-+.+
T Consensus 312 ~~~~~~h~~T~~-gnpla~aaa~a~L~~i~~~~l--------~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~ 382 (466)
T PRK07030 312 TLRAFLHSHSYT-GNPLACAAALATLDIFEQDNV--------IENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEM 382 (466)
T ss_pred cccccccCCCCC-CCHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEe
Confidence 11222 45666666555554 2222 12222222333333333 322111234567887877
Q ss_pred cchhhcc---CchH--HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 361 RHLLKEK---TLEG--EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 361 ~~~~~~~---~~~~--e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
....... .... ...+...++ ++||.+.+.. ..+|+.... +++++++++++++.+++++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 383 VQDKASKTPYPWQERRGLKVYQHAL-ERGALLRPLG-------SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred ccCccccccCcchhHHHHHHHHHHH-HCCeEEEecC-------CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 5311100 0011 123555555 4699997631 368988655 49999999999999999874
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-10 Score=121.56 Aligned_cols=303 Identities=13% Similarity=0.108 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcE--------
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQ-------- 159 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~-------- 159 (477)
+.+..+|+.+.+..+ -..+.+++++++++|++.++.... ....+|+...-+|++.....-..+|..
T Consensus 113 ~~~~~lae~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 188 (459)
T PRK06082 113 ETAIECAEKLTEIAG----GELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGP 188 (459)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCC
Confidence 444455555544322 123689999999999999987642 223678888888887643222111211
Q ss_pred ----EEEEeccCC--CCcc-cC------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeE
Q 011801 160 ----IVPVHCDIS--NNFK-IT------REALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIH 226 (477)
Q Consensus 160 ----~~~v~~~~~--~~f~-i~------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~ 226 (477)
+..++.... ..|. .+ ++.+++.+++ ..++.+|++.--.+..+...+.+-+++|.++|+++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~l 264 (459)
T PRK06082 189 LMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVL 264 (459)
T ss_pred CCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 112221100 0011 01 2345555542 23676666543334334567888899999999999999
Q ss_pred EEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---hcccCCCch
Q 011801 227 LVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---MSSFGLVSS 302 (477)
Q Consensus 227 lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---~~~~~~vs~ 302 (477)
+|.||+..++.-.+..+.. +. .+..+| ++ +++|.+| .| +.+|.+++.++ +...... ..+++ .++
T Consensus 265 lI~DEV~tG~GRtG~~fa~--e~---~gv~PD--iv--~~gKgl~-gG~~P~~av~~~~~-i~~~~~~~~~~~T~~-gnp 332 (459)
T PRK06082 265 LIIDEIPNGMGRTGEWFTH--QA---YGIEPD--IL--CIGKGLG-GGLVPIAAMITKDK-YNTAAQISLGHYTHE-KSP 332 (459)
T ss_pred EEEechhhCCCccchhhHh--Hh---hCCCCC--EE--Eeccccc-CCCCcceEEEEcHH-HHhhccCCCCCCCCC-cCH
Confidence 9999999874333322111 11 122344 22 4899998 77 59999999654 4332211 11222 455
Q ss_pred HHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchhhcc--CchHHH
Q 011801 303 QTQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLLKEK--TLEGEI 373 (477)
Q Consensus 303 ~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~~~~--~~~~e~ 373 (477)
++..++.+.|+ +.++ .++++++-++|.+.|++ +++...-..-|+++.+++....... ..+...
T Consensus 333 l~~aaa~a~L~~l~~~~l--------~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~ 404 (459)
T PRK06082 333 LGCAAALATIEVIEQEGL--------LEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAE 404 (459)
T ss_pred HHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHH
Confidence 55555555543 2222 22333333444444433 3332222345678888775321111 111112
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.++..++ +.||.+.+. ..+.+|++... +++++++++++++.+++.+.
T Consensus 405 ~~~~~~~-~~Gvl~~~~------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 405 AVLYRCL-NNGLSFKVS------QGNVIQLSPPLIITREELTQALAILEEAIAKI 452 (459)
T ss_pred HHHHHHH-hCCCEEEec------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3445555 569998763 13579998765 49999999999999998763
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-11 Score=122.00 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=161.2
Q ss_pred cEEEe-CChHHHHHHHHHHhc-CC-CCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCC--CCcc---
Q 011801 113 RIVMG-GGATGANELIMFCLA-NP-GDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDIS--NNFK--- 172 (477)
Q Consensus 113 ~i~~t-~G~t~al~~i~~~l~-~~-Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~--~~f~--- 172 (477)
.++++ +++++|++.+++... .+ ..+|+...-+|++....+...+|. .+..++.+.. ..+.
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 207 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGG 207 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCch
Confidence 56665 788999999987642 23 367888888888765332211111 1222332110 0011
Q ss_pred -----cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 173 -----ITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 173 -----i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.+.+.+++.+++......++.+||+.--..-.|.+ .+.+-+++|.++|+++|+++|.||+..++.-.+..+.
T Consensus 208 ~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a-- 285 (464)
T PRK06938 208 EAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFA-- 285 (464)
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHH--
Confidence 12456666664321111257776664223334654 4688899999999999999999999987533332211
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--h-cccCCCchHHHHHHHHhcC---ChhhHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--M-SSFGLVSSQTQYLLASMLS---DDEFVDN 320 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~-~~~~~vs~~~q~~~~~~L~---~~~~~~~ 320 (477)
.+..+..+| ++ +++|.+| .|+.+|.+++.++ + ..... . ..|+ .++++..++.+.|+ +.++ .+
T Consensus 286 ---~e~~gv~PD--iv--~~gKglg-gG~PlsAv~~~~~-~-~~~~~~~~~~T~~-gnpla~Aaa~a~L~~l~~~~l-~~ 353 (464)
T PRK06938 286 ---FEHAGIIPD--VV--VLSKAIG-GSLPLAVVVYREW-L-DTWQPGAHAGTFR-GNQMAMAAGSATLRYIKEHRL-AE 353 (464)
T ss_pred ---HHhcCCCCC--EE--Eeecccc-CCCceEEEeehhH-h-hccCCCCCCCCCC-cCHHHHHHHHHHHHHHHHhHH-HH
Confidence 111122344 22 6689998 8999999998654 3 32211 1 2222 45666665555554 2222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc--------CchHHHHHHHHHHHhcCeEEeCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK--------TLEGEIALWRTIVNDVKLNVSPGSS 392 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~--------~~~~e~~l~~~ll~~~gI~v~pg~~ 392 (477)
+.++.-++++++.+.+ .+++++...-..-|+++.+++....... .......++..++ ++||++.++..
T Consensus 354 ~~~~~G~~l~~~L~~l---~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g~ 429 (464)
T PRK06938 354 HAAAMGERLREHLRQL---QRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELGGR 429 (464)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeecCC
Confidence 2222222333222211 1223432223345688888875321100 0011123455555 56999987532
Q ss_pred CCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 393 FQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 393 f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+ .+.+|+.... +++++++++++++.+++.+
T Consensus 430 ~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 430 H----GSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred C----CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 2 3579998665 4999999999999999865
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-11 Score=121.60 Aligned_cols=355 Identities=13% Similarity=0.089 Sum_probs=187.0
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ .+.+ +.+.+.+.+++.-+ .+..+....-..+....+|+.+.+... -
T Consensus 26 D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~-------------~~~~~~~~~~~~~~~~~lae~L~~~~p----~ 88 (443)
T PRK07483 26 DATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQID-------------RLAYAHTSFFTTEPAEALADRLVAAAP----A 88 (443)
T ss_pred eCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHH-------------hccCccccccCCHHHHHHHHHHHHhCC----C
Confidence 3445667888543 4444 34666666665311 111000000012444556666554321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISN 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~ 169 (477)
..+++++++++++|++.+++.... +| .+|+...-+|++.....-..+|.. +..++.. .
T Consensus 89 ~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~--~ 166 (443)
T PRK07483 89 GLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPC--Y 166 (443)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCC--c
Confidence 236899999999999998875321 33 468888888887643222111111 1112211 0
Q ss_pred Cccc-----C--------HHHHHHHHHHHHHhCCCeeEEEEeCCCC-Cccc-CCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 170 NFKI-----T--------REALEAAYERAQEASINIKGLIITNPSN-PLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 170 ~f~i-----~--------~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
.|+. + ++++++++.. ....++.+|++.--.. -.|. ..+.+-+++|.++|++||+++|.||+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 244 (443)
T PRK07483 167 AYREQRAGESDEAYGQRLADELEAKILE--LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC 244 (443)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHh--cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee
Confidence 1111 1 2344444432 1123677766653222 2354 5577789999999999999999999998
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHHh-------cccCCCchHHHH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRKM-------SSFGLVSSQTQY 306 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~~-------~~~~~vs~~~q~ 306 (477)
++.-.+..+ . .+. .+..+| ++ +++|.+| .|+ .+|.+++.++ +.+.+... .+|+ .++++..
T Consensus 245 GfGRtG~~~-a-~~~---~gv~PD--iv--~~gK~l~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~h~~T~~-gnpl~~a 312 (443)
T PRK07483 245 GMGRTGTLF-A-CEE---DGVAPD--LV--TIAKGLG-AGYQPIGAVLASDR-IYDAIADGSGFFQHGHTYL-GHATACA 312 (443)
T ss_pred CcccCcHHH-H-Hhh---cCCCCC--ee--eehhhhc-cCccccEEEEEcHH-HHHHHhcCCCccccCCCCC-CCHHHHH
Confidence 753333221 1 111 122334 22 6799998 896 9999999655 44433211 1222 4556555
Q ss_pred HHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc-Cc--h--HHHHHHHH
Q 011801 307 LLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK-TL--E--GEIALWRT 378 (477)
Q Consensus 307 ~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~-~~--~--~e~~l~~~ 378 (477)
++.+.|+ +.++ -+..++.-++++++ |.+.+++.+....-..-|+++-+++....... .+ . ....+++.
T Consensus 313 aa~a~l~~i~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~ 388 (443)
T PRK07483 313 AALAVQRVIAEDGL-LANVRARGEQLRAR---LRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKRE 388 (443)
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHH
Confidence 5555553 3332 12223333333322 22222223321112245677777774311100 00 1 11235555
Q ss_pred HHHhcCeEEeCCCCC-CCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 379 IVNDVKLNVSPGSSF-QCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 379 ll~~~gI~v~pg~~f-~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+++ .||++.+.... .....+.+|+..... +++++++++++|.+.+.+
T Consensus 389 ~~~-~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 389 AMA-RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred HHH-CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 554 59999874211 011135799988764 999999999999999975
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-11 Score=126.15 Aligned_cols=350 Identities=11% Similarity=0.085 Sum_probs=185.2
Q ss_pred CCCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCC-CCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDY-HGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+..||+..+. ..+ +.+.+.+.+++.-+ .+..+... ....+.+..+|+.+.+..+
T Consensus 46 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~~~~~~~~~~~~~~~~lae~L~~~~p---- 108 (456)
T PRK07480 46 DSEGNKILDGMAGLWCVNVGYGRKELADAAARQMR-------------ELPYYNTFFKTTHPPAIELAAKLAEVAP---- 108 (456)
T ss_pred eCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHH-------------hcCCcccccccCCHHHHHHHHHHHHhCC----
Confidence 44556678885442 333 34666666655311 11111100 1123445555555544321
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccC-
Q 011801 109 FDPDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDI- 167 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~- 167 (477)
-.-+++++++++++|++.+++.... +| .+|+...-+|++........+|.. +..++.+.
T Consensus 109 ~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~ 188 (456)
T PRK07480 109 PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYW 188 (456)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcc
Confidence 1236899999999999999876421 33 468888888877542211111211 11111100
Q ss_pred -CCCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 -SNNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 -~~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
...+..+ .+++++.+.+ ....++.+|++.--..-.|.. .+.+-+++|.++|++||+++|.||++.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfG 266 (456)
T PRK07480 189 FGEGGDMTPEEFGLAAARQLEAKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFG 266 (456)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 0000111 2344443322 112367777665444456765 466679999999999999999999998753
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHH-H---h---cccCCCchHHHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGR-K---M---SSFGLVSSQTQYLLA 309 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~-~---~---~~~~~vs~~~q~~~~ 309 (477)
-.+..+. . +. .+..+| +-+|+|.+| .|+ .+|.+++.++ +.+.+. . . .+|+ .++++..++.
T Consensus 267 RtG~~~a-~-~~---~gv~PD----iv~~gK~l~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~T~~-gnpl~~Aaa~ 334 (456)
T PRK07480 267 RTGEWFG-S-QH---FGIKPD----LMTIAKGLT-SGYIPMGAVGVGDR-VAEVLIEEGGEFNHGFTYS-GHPVAAAVAL 334 (456)
T ss_pred cCcchhh-h-hh---cCCCCC----eeeeehhhc-cCCccceEEEEcHH-HHHHHhcCCCCcccCCCCC-cCHHHHHHHH
Confidence 3333221 1 11 122344 237799998 784 8999999554 444431 1 1 1222 4566666655
Q ss_pred HhcC---ChhhHHHHH-HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc-cCchH----HHHHHHHHH
Q 011801 310 SMLS---DDEFVDNFL-VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE-KTLEG----EIALWRTIV 380 (477)
Q Consensus 310 ~~L~---~~~~~~~~~-~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~-~~~~~----e~~l~~~ll 380 (477)
+.|+ +.++ -+.. ++.-+++.++ +.+ +.++++...-..-|+++-+.+...... ..+.. ...+...++
T Consensus 335 a~L~~l~~~~l-~~~~~~~~g~~l~~~---l~~-l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (456)
T PRK07480 335 ANLRILRDEGI-VERVRDDTGPYLQKR---LRE-LADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCF 409 (456)
T ss_pred HHHHHHHhCCH-HHHHHHHHHHHHHHH---HHH-hhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHH
Confidence 5553 2222 1112 1222333322 222 333443212234467777777421110 11111 113344444
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
++||.+.+. .+.+|++.+.. +++++++++++|.+++.+.
T Consensus 410 -~~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 410 -ANGLIMRAV-------GDRMIISPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred -HCCcEEeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 569999752 14689998764 9999999999999999764
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=121.22 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=162.8
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCCc------------EEEEEeccC--CC
Q 011801 112 DRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDI--SN 169 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~--~~ 169 (477)
+.+++++++++|++.+++... .+| .+|+...-+|++....+-..+|. .+..+|... ..
T Consensus 117 ~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~ 196 (460)
T PRK06916 117 KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRS 196 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCccccc
Confidence 689999999999999987642 233 67888888888754322211121 112222110 00
Q ss_pred Ccc--------cCHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 170 NFK--------ITREALEAAYERAQEASINIKGLIITN-PSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 170 ~f~--------i~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
.+. -+++++++.++. .+.++.+|++.- ...-.|.+ .+.+-+++|.++|+++|+++|.||+..++.-.
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRt 273 (460)
T PRK06916 197 PYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRT 273 (460)
T ss_pred ccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcC
Confidence 011 123455555542 234777777764 24555765 58888999999999999999999999774333
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH--------h--cccCCCchHHHHHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK--------M--SSFGLVSSQTQYLL 308 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~--------~--~~~~~vs~~~q~~~ 308 (477)
+..+. . +..+..+| + -+++|.+| .| +.+|.+++.++ +.+.... . .+|+ .++++..++
T Consensus 274 G~~~a-~----~~~gv~PD--i--v~~gK~l~-gG~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~~T~~-gnpl~~aaa 341 (460)
T PRK06916 274 GKMFA-C----EHENVTPD--I--MTAGKGLT-GGYLPIAITVTTDE-IYNAFYGDYEEQKTFFHGHSYT-GNPLGCAVA 341 (460)
T ss_pred chhhH-H----HhcCCCCC--e--eeeehhhh-cCccccceeeecHH-HHHHhhccccccCccccCCCCC-CCHHHHHHH
Confidence 32211 1 11122344 2 26799998 88 59999999655 4333221 1 1222 355555555
Q ss_pred HHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEecCCceEEEEeeccchhhcc-Cc--hH--HHHHHH
Q 011801 309 ASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLKSNAGLFFWMDLRHLLKEK-TL--EG--EIALWR 377 (477)
Q Consensus 309 ~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~~~~g~~~~~~l~~~~~~~-~~--~~--e~~l~~ 377 (477)
.+.|+ +.++ .+++++.-+++.+.|+++ .+......-|+++-+.+....... .+ .. ...++.
T Consensus 342 ~a~l~~l~~~~l--------~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~ 413 (460)
T PRK06916 342 LANLELYEKTNL--------IEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCK 413 (460)
T ss_pred HHHHHHHHhccH--------HHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHH
Confidence 55553 2222 223333334444444432 221112234577777764311110 01 11 123555
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 378 TIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.++ +.||++.|.. ..+|+..+. ++++++++++++|.+++++.
T Consensus 414 ~~~-~~Gvl~~~~g-------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 414 RSR-ELGMLTRPLG-------NTIVFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred HHH-HCCeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 555 5699998641 368888654 49999999999999999763
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-11 Score=120.82 Aligned_cols=337 Identities=12% Similarity=0.081 Sum_probs=182.1
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ ...+ +.+.+.+.+++.-+. .. ...+... ..+....+|+.+.+..+ -
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~----------~~-~~~~~~~--~~~~~~~lae~L~~~~p----~ 98 (422)
T PRK05630 36 LEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDT----------MS-HVMFGGL--THEPAIKLTRKLLNLTD----N 98 (422)
T ss_pred ECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHh----------CC-CcccCCc--CCHHHHHHHHHHHhhCC----C
Confidence 4556778888544 3333 346666666553110 00 0011101 12334455555543321 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS 168 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~ 168 (477)
.-+++++++++++|++.+++.-.. +| .+|+...-+|++....+...++- ....+|....
T Consensus 99 ~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~ 178 (422)
T PRK05630 99 GLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV 178 (422)
T ss_pred CcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc
Confidence 236899999999999998876321 23 57898888888754322211121 1122222110
Q ss_pred CCcccCHHHH---HHHHHHHHHhCCCeeEEEEeC-CCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 169 NNFKITREAL---EAAYERAQEASINIKGLIITN-PSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 169 ~~f~i~~~~l---~~~~~~~~~~~~~~k~vii~n-P~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
...+.+++ .+.+++... .++.+|++.- ...-.|.. .+.+-+++|.++|+++|+++|+||++.++...+..+
T Consensus 179 --~~~~~~~~~~~~~~~~~~~~--~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~ 254 (422)
T PRK05630 179 --RGSSPQEISEYLRSLELLID--ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254 (422)
T ss_pred --cCCChHHHHHHHHHHHHHHh--hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh
Confidence 11122222 222222111 2677776663 14556764 567789999999999999999999997643223221
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---------hcccCCCchHHHHHHHHhcC
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---------MSSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---------~~~~~~vs~~~q~~~~~~L~ 313 (477)
. .+. .+..+| ++ +|+|.+| .| ..+|.++++++ +.+.+.. ..+|+ .++.+..++.+.|+
T Consensus 255 -a-~~~---~gv~PD--i~--t~gK~l~-gG~~p~~av~~~~~-i~~~~~~~~~~~~~~h~~T~~-g~Pla~aaa~aaL~ 322 (422)
T PRK05630 255 -A-TLA---AGVTPD--IM--CVGKALT-GGFMSFAATLCTDK-VAQLISTPNGGGALMHGPTFM-ANPLACAVAHASLE 322 (422)
T ss_pred -H-HHh---cCCCCC--ee--eeechhh-cCccccceeeccHH-HHHHHhccCCCCccccCCCCc-CCHHHHHHHHHHHH
Confidence 1 111 111334 22 8899997 67 48999998554 4443321 12232 44555554444443
Q ss_pred ---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 314 ---DDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 314 ---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
+.++ .+++++.-++|.+.|+++ .+.-. ..-|+++-+.+..... ...++..++ ++||.
T Consensus 323 ~l~~~~~--------~~~~~~~g~~l~~~L~~l~~~~~v~~v-Rg~Gl~~~ie~~~~~~------~~~~~~~~~-~~Gl~ 386 (422)
T PRK05630 323 IIETGMW--------RKQVKRIEAELIAGLSPLAHLPGVADV-RVLGAIGVVEMEQPVD------MEEATQAAV-DHGVW 386 (422)
T ss_pred HHHhCcH--------HHHHHHHHHHHHHHHHHhhcCCCeeee-eccccEEEEEECCccc------HHHHHHHHH-HCCeE
Confidence 3222 223333333344444322 11111 2246788888753211 113455555 56999
Q ss_pred EeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 387 VSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+. + +.+|+..+.. +++++++++++|+++++.
T Consensus 387 ~~~~------g-~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 387 LRPF------G-RLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred EEec------C-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 9763 1 4789988764 999999999999999865
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=120.21 Aligned_cols=281 Identities=12% Similarity=0.081 Sum_probs=163.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDISN 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~~ 169 (477)
.+++++++++++|++.+++... .+| .+|+...-+|++........+|- .+..+|... .
T Consensus 104 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 182 (429)
T PRK06173 104 LNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPS-I 182 (429)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCC-c
Confidence 3689999999999999887642 133 57888888888743221111110 011122110 0
Q ss_pred Ccc-----cCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 170 NFK-----ITREALEAAYERAQEASINIKGLIITNP-SNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 170 ~f~-----i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
.+. -++++|++.++. .+.++.+|++.-- ..-.|.. .+.+-+++|.++|++||+++|+||++.++.-.+..
T Consensus 183 ~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 259 (429)
T PRK06173 183 KFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKL 259 (429)
T ss_pred ccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcc
Confidence 011 134556666642 2346777776632 4555765 67788999999999999999999999764222322
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHH-------h-cccCCCchHHHHHHHHhcC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRK-------M-SSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~-------~-~~~~~vs~~~q~~~~~~L~ 313 (477)
+ . .+. .+..+| ++ +|+|.+| .|+ .++.++..++ +.+.+.. . .+++ .++++..++.+.|+
T Consensus 260 ~-a-~~~---~gv~PD--iv--~~gK~l~-gG~~p~~a~~~~~~-i~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~ 327 (429)
T PRK06173 260 F-A-LEH---AGVVPD--IM--CIGKALT-GGYLTLSATITTEA-IAQTICSGEAKCFMHGPTFM-ANPLACAIAAESIR 327 (429)
T ss_pred h-H-HHh---cCCCCC--EE--Eeehhhh-CCccccceEEecHH-HHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHH
Confidence 1 1 111 112334 33 4899997 884 7888888554 4443321 1 1222 34555555544443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec--CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK--SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~--~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
-- ++ ....++++++-++|.+.|++. +..... ...|+++-+.+..... ...+++.++ +.||.+.+.
T Consensus 328 ~i---~~--~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~------~~~i~~~l~-e~Gi~v~~~ 395 (429)
T PRK06173 328 LL---LE--SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVN------MATLQPRFV-EHGIWVRPF 395 (429)
T ss_pred HH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCccc------HHHHHHHHH-HCCeEEEec
Confidence 21 11 012334445555566666543 322221 1346777777753211 123555554 569999764
Q ss_pred CCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 391 SSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
. ..+|+..... +++++++++++|.+++.+
T Consensus 396 g-------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 396 G-------KLVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred C-------CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 1 3799998764 999999999999999865
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-11 Score=121.55 Aligned_cols=280 Identities=15% Similarity=0.112 Sum_probs=162.5
Q ss_pred CcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCCcE-------------EEEEeccCCCC
Q 011801 112 DRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTGVQ-------------IVPVHCDISNN 170 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g~~-------------~~~v~~~~~~~ 170 (477)
+++++++++++|++.++.... .+| .+|+...-+|.+....+...+|.. ...++.. ...
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~ 184 (427)
T TIGR00508 106 DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNR 184 (427)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-Ccc
Confidence 689999999999998887532 123 578888888887643322211211 1111111 011
Q ss_pred cc-----cCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 171 FK-----ITREALEAAYERAQEASINIKGLIITNP-SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 171 f~-----i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
|. -+.+++++.+++. +.++.+|++.-- .+-.|. ..+.+.+++|.++|+++|+++|+||++.++...+..+
T Consensus 185 ~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~ 261 (427)
T TIGR00508 185 FDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLF 261 (427)
T ss_pred ccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccc
Confidence 11 1345666666432 335666555531 455565 4578899999999999999999999997654444332
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCc-eEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhcCC
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF-RVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~-RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L~~ 314 (477)
.. +.. +..+| ++ +++|.++ .|+ .++.++..++ +.+.+... .+++ .++++..++.+.|+-
T Consensus 262 ~~--~~~---~v~pD--i~--~~gK~l~-gG~~p~~a~~~~~~-~~~~~~~~~~~~~~~~~T~~-g~p~~~aaa~a~l~~ 329 (427)
T TIGR00508 262 AC--EHA---GVVPD--IL--CVGKALT-GGYMTLSATVTTDK-VAQTISSGEAGCFMHGPTFM-GNPLACAVAEASLAI 329 (427)
T ss_pred hh--hhc---CCCCC--EE--Eechhhh-cCcccceEEEEcHH-HHHHHhcCCCCccccCCCCC-cCHHHHHHHHHHHHH
Confidence 22 111 11333 33 4799997 885 6888887444 44444321 1222 355555555555541
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCe-Eec--CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGIN-CLK--SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS 391 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~-~~~--~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~ 391 (477)
- ++ .+..++++++-++|.++|++++.. ... ..-|+++-+.+.... . ...++..+++ .||.+.+..
T Consensus 330 l---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~---~---~~~~~~~l~~-~Gv~~~~~~ 397 (427)
T TIGR00508 330 L---LE--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV---N---VEELQKKFVE-QGVWIRPFG 397 (427)
T ss_pred H---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc---C---HHHHHHHHHH-CCeEEEecC
Confidence 1 10 112344555556666666655311 111 123567777765211 1 1245666654 599997542
Q ss_pred CCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 392 SFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
..+|++.... ++++++++++++.+++.+
T Consensus 398 -------~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 398 -------KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred -------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 2689988753 999999999999999865
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=120.05 Aligned_cols=357 Identities=11% Similarity=0.057 Sum_probs=187.5
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ ...+ +.+.+.+.+++.-+. ....+... -..+.+..+|+.+.+..+.. ..
T Consensus 54 D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~------------~~~~~~~~-~~~~~~~~lAe~L~~~~p~~-~~ 119 (459)
T PRK06931 54 DVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS------------GLPLHTLD-LTTPLKDAFSEYLLSLLPGQ-GK 119 (459)
T ss_pred eCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh------------hccccccc-cCCHHHHHHHHHHHHhCCCc-cc
Confidence 4455667888554 2333 346666666553110 01011100 12355556666665432100 00
Q ss_pred CCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCC--CCcc-
Q 011801 110 DPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDIS--NNFK- 172 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~--~~f~- 172 (477)
+...+++++++++|++.+++.. .....+|+...-+|++....+-..+|. .+..++.... ..|.
T Consensus 120 ~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (459)
T PRK06931 120 EYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199 (459)
T ss_pred cceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccC
Confidence 0113455689999999988763 223367888888888765433211111 1222222110 0111
Q ss_pred ---cCHHHHHHHHHHHHH----hCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 173 ---ITREALEAAYERAQE----ASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 173 ---i~~~~l~~~~~~~~~----~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
-+.+++++.+++... ...++.+||+.--..-.|.+ .+.+-+++|.++|+++|+++|.||+..++.-.+..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~- 278 (459)
T PRK06931 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF- 278 (459)
T ss_pred CchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHH-
Confidence 123344333333221 12357776664333344654 567789999999999999999999998753333221
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--h-cccCCCchHHHHHHHHhcC---ChhhH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--M-SSFGLVSSQTQYLLASMLS---DDEFV 318 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~-~~~~~vs~~~q~~~~~~L~---~~~~~ 318 (477)
. .+..+..+| + -+++|.+| .|+.+|.+++.++ + +.... . ..|+ .++++..++.+.|+ +.+.
T Consensus 279 a----~~~~gv~PD--i--vt~gK~l~-gG~Pi~av~~~~~-~-~~~~~~~~~~T~~-gnpla~aaala~L~~l~~~~l- 345 (459)
T PRK06931 279 A----FEHAGIEPD--I--IVMSKAVG-GGLPLAVLGIKKE-F-DAWQPGGHTGTFR-GNQLAMATGLTTLKILKEENL- 345 (459)
T ss_pred H----hhhcCCCCC--E--EEeccccc-CCcceeeeeeHHH-H-hhccCCCCCCCCC-CCHHHHHHHHHHHHHHHhCCH-
Confidence 1 111122334 2 36799999 8999998887543 3 32211 1 2222 55666665555554 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc------c--CchHHHHHHHHHHHhcCeEEeCC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE------K--TLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~------~--~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
-++.++.-++++++.+.+ .++.++...-..-|+++.+.+...... . .......++..++ +.||++.++
T Consensus 346 ~~~~~~~G~~l~~~L~~l---~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~ 421 (459)
T PRK06931 346 AQNAAERGEWLKAQLAEL---QKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACF-ENGLLLERG 421 (459)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHH-HCCcEEeec
Confidence 222333333333332222 223343222334567887877431110 0 0111224555555 469999875
Q ss_pred CCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 391 SSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.. ..+.+|+..+.. ++++++++++++.+++.+
T Consensus 422 ~~----~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 422 GR----NGNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred CC----CCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 32 135789888764 999999999999999865
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-11 Score=127.15 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=119.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..+..+.+|+.++ ....-++++|+|.++.+++.+++.+||.||++.-++-.....+.+. |+..+.+....
T Consensus 197 i~eAe~~AA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLils-ga~PVYl~P~r 266 (714)
T PRK15400 197 HKEAEEYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMS-DVTPIYFRPTR 266 (714)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 4566667777765 2346888999999999999999999999999999999888877776 99998887543
Q ss_pred CCCccc----C-----HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-
Q 011801 168 SNNFKI----T-----REALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV- 237 (477)
Q Consensus 168 ~~~f~i----~-----~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~- 237 (477)
+.|++ + .+.+++++++..+. .+++++++++| +-.|.+++ ++.|++.|..++ |++||+|.+..
T Consensus 267 -n~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~p-TYdG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~ 338 (714)
T PRK15400 267 -NAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTN 338 (714)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECC-CCccEecC---HHHHHHHhCCCC--EEEEccchhhhc
Confidence 34433 5 78888888764311 13347899998 77899999 677777777777 68999998752
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG 278 (477)
|.. .+.....+.. .....+.++++.|.+|.+ ||+.-+
T Consensus 339 F~p-~~~~~sam~~-ga~~~~~i~vtQStHKtL--~alTQa 375 (714)
T PRK15400 339 FSP-IYEGKCGMSG-GRVEGKVIYETQSTHKLL--AAFSQA 375 (714)
T ss_pred cCc-ccCCcChhhc-CCCCCCceEEEEchhhcc--cchhHH
Confidence 332 2211111111 000125568899999988 565543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-11 Score=127.91 Aligned_cols=320 Identities=16% Similarity=0.165 Sum_probs=189.4
Q ss_pred cccccccccCC---CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC-ChHHHHHHHHHHh----cCC----CCeEEEc
Q 011801 74 EVFKDIAIFQD---YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG-GATGANELIMFCL----ANP----GDAFLVP 141 (477)
Q Consensus 74 ~~~~~~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~-G~t~al~~i~~~l----~~~----Gd~vlv~ 141 (477)
.+|....-|+| .+|..++...+.+++.+..| .+ .+-+-. +++.+..+.+.++ ..+ .+.|+++
T Consensus 524 ~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLtG----md--~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp 597 (954)
T PRK12566 524 PEFAQLHPFAPREQAEGYRAMIDELEAWLCAITG----FD--AICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIP 597 (954)
T ss_pred hhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHHC----CC--eEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEec
Confidence 34555567888 67888888888888888766 22 233333 3444443444343 222 2567888
Q ss_pred CCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH
Q 011801 142 SPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN 221 (477)
Q Consensus 142 ~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~ 221 (477)
.-.|+.....+... |++++.++++.+ ..+|+++|++.+++. +.++.+|++++|++-.+. .+.+++|+++|+
T Consensus 598 ~saHgtNpasa~~~-GieVv~Vp~D~~--G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah 668 (954)
T PRK12566 598 SSAHGTNPASAQMA-GMRVVIVECDPD--GNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVH 668 (954)
T ss_pred ccccccCHHHHHHC-CCEEEEeccCCC--CCcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHH
Confidence 77674433445555 999999999853 379999999998632 347888889988766544 345999999999
Q ss_pred hcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC----CceEEEEEeCCHHHHHHHHHhc--
Q 011801 222 DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP----GFRVGIVYSFNDTVVNCGRKMS-- 295 (477)
Q Consensus 222 ~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~----G~RvG~i~~~~~~i~~~~~~~~-- 295 (477)
++|+++++|.+... ..-...... ..+..+++++++|+|+.| |.-+|.+... +.+...+..+.
T Consensus 669 ~~Galv~vDgA~~~---a~~~l~~Pg--------~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~-~~L~pfLp~~P~~ 736 (954)
T PRK12566 669 QHGGQVYMDGANLN---AQVGLARPA--------DIGADVSHMNLHKTFCIPHGGGGPGMGPIGVR-AHLAPFVANHPVV 736 (954)
T ss_pred HcCCEEEEEeeChh---hccCCCChh--------hcCCCEEEecCCcccCcCccCCCCccchhhhh-hhhhhhccCCCCc
Confidence 99999999999862 111111111 235568889999988522 3445554442 22333333221
Q ss_pred -------ccCCCch--HHH----HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEE--EEee
Q 011801 296 -------SFGLVSS--QTQ----YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLF--FWMD 359 (477)
Q Consensus 296 -------~~~~vs~--~~q----~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~--~~~~ 359 (477)
..+.+|. ..| ..+..++..-. .+ +.+.......+..++.+.|.+. ++.+.+.++-+| +.++
T Consensus 737 d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG--~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~ 813 (954)
T PRK12566 737 PVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG--PQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILD 813 (954)
T ss_pred CCCCCCCCCCceeecccchHHHHHHHHHHHHHHC--HH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEE
Confidence 0111111 111 11222222212 12 4444444455667888888663 444422222111 2345
Q ss_pred ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 360 l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
++...+....+ ..++.++|+ ++||..- ...| + .++++||+.... +.+++|+++++|+.+.++.+
T Consensus 814 ~~~l~~~~g~~-~~dvakRL~-d~Gihap-t~~f-P-v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 814 LRPLKAQTGIS-EEDVAKRLM-DYGFHAP-TMSF-P-VPGTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred ccccccccCCC-HHHHHHHHH-HCCcEEe-EEee-c-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 54332222222 235788888 7798753 3333 2 478899999765 89999999999999887643
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-11 Score=128.11 Aligned_cols=305 Identities=18% Similarity=0.201 Sum_probs=184.6
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccchHHHHhhhCC
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~~~~~~~~~g 157 (477)
+|..++...+.+|+.+..| ++...+ ..+|++.|..+.+.++. ...+.|+++.-.++.....+... |
T Consensus 526 qG~lq~i~elq~~l~eltG----md~~Sl-~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~-G 599 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITG----FDAISL-QPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA-G 599 (939)
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCccc-CCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC-C
Confidence 4666778888888888776 443223 33444544443333321 12357889988886555556666 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
++++.++++. +..+|+++|++++++ ++.++++|++++|+| +|.+-+ .+++|+++|+++|.++++|.++..-.
T Consensus 600 ~~Vv~V~~d~--~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 600 MQVVPVNCDQ--DGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CEEEEeccCC--CCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhC
Confidence 9999999874 457999999999975 245899999999999 788754 38899999999999999999995311
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccC----CCCceEEEEEeCCHHHHHHHHH--h----------cccCCCc
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG----LPGFRVGIVYSFNDTVVNCGRK--M----------SSFGLVS 301 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g----~~G~RvG~i~~~~~~i~~~~~~--~----------~~~~~vs 301 (477)
..- ... . ..+..++++|.+|.|+ ..|-.+|++.+.++ +...+-. + ...+.++
T Consensus 672 ~~l---~~P----g----~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~-L~~~lPg~~v~~t~d~~greq~Iga~s 739 (939)
T TIGR00461 672 VGL---TSP----G----DLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH-LIPFLPKHDVVSMITGIGGSKSIGSVS 739 (939)
T ss_pred CCC---CCc----c----ccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh-chhhcCCCcccccccCCCCcccccccc
Confidence 110 110 1 2355678889999765 35566899988643 2222110 0 0001111
Q ss_pred h---------HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEE---EEeeccchhhccC
Q 011801 302 S---------QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLF---FWMDLRHLLKEKT 368 (477)
Q Consensus 302 ~---------~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~---~~~~l~~~~~~~~ 368 (477)
+ +..++-..++.... +++..+..-.+..++.+.|.+ ++++.-+ ..+.+ +.++++.......
T Consensus 740 ~~~~g~a~~~l~a~~yi~~lG~~G-----L~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g 813 (939)
T TIGR00461 740 AAPYGSASILPISWMYIKMMGNEG-----LPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTG 813 (939)
T ss_pred ccccCcHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcC
Confidence 1 11122223333333 445555555667888888876 4444332 22231 3456664322222
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCCCCCCC--EEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~--~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.. ..++.++|++. |+.- |-..|. ..+ .+|.+-.. +.+++|++++.+.++.++.+
T Consensus 814 ~~-~~dIakrL~d~-G~ha-pt~~~p--v~g~lmiepTE~e-skeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 814 IE-AIDVAKRLQDY-GFHA-PTLSFP--VPGTLMVEPTESE-SLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred CC-HHHHHHHHHhC-Ceec-cccCCc--cCCeEEEEeeccC-CHHHHHHHHHHHHHHHHHHH
Confidence 22 34677888765 9863 333333 233 35555543 88999999999988876544
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-11 Score=118.93 Aligned_cols=274 Identities=11% Similarity=0.101 Sum_probs=167.6
Q ss_pred cEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccch-H-HHHhhhCCc-EEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAF-D-RDLSWRTGV-QIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~-~-~~~~~~~g~-~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
-+++++|+|.+++.++..++ ++|+++|+.. .|..- . ..++.. |+ ++..+..+. +-.+++++++.
T Consensus 60 v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~-g~~~v~~l~~~~--g~~~~~~~ve~-------- 127 (374)
T TIGR01365 60 IGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQL-KLPDVRVLEAEY--GKLPDLKKVDF-------- 127 (374)
T ss_pred EEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhc-CCCCcEEEcCCC--CCCCCHHHcCC--------
Confidence 36779999999999999998 5899999876 55543 3 455555 88 466665443 33568888762
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
+ +.|++++.-..||+..+. ++++..+ ++.++|+|.+-+ +.+.++ .+.. ..+++.|-.|
T Consensus 128 --~-~~v~~vhnETSTGv~npv---~~i~~~~--~~~lliVDavSs---~g~~~l-~~d~----------iDv~~tgsQK 185 (374)
T TIGR01365 128 --K-NDVVFTWNGTTSGVRVPN---GDFIPAD--REGLTICDATSA---AFAQDL-DYHK----------LDVVTFSWQK 185 (374)
T ss_pred --C-CCEEEecCCCchheeccc---ccccccc--CCCcEEEEccch---hcCCCC-ChhH----------CcEEEEechh
Confidence 1 126788777899999994 4444321 488999999987 555542 2222 2366788899
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHH--------Hh-------------cccCCCchHHHHHHHHhcCChhhHHH--HHHHH
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGR--------KM-------------SSFGLVSSQTQYLLASMLSDDEFVDN--FLVET 325 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~--------~~-------------~~~~~vs~~~q~~~~~~L~~~~~~~~--~~~~~ 325 (477)
.+|+|+ .+++++.+++.+..... .+ ....+.+++.-.++..++..-+++.+ -++..
T Consensus 186 ~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~ 264 (374)
T TIGR01365 186 VLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPL 264 (374)
T ss_pred ccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHH
Confidence 999765 47778887776644221 10 00111222222222222221111111 26777
Q ss_pred HHHHHHHHHHHHHHHhhCC-CeEecC----CceEEEEeeccch-hh----ccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 326 SKRLAKRHHNFTKGLEQVG-INCLKS----NAGLFFWMDLRHL-LK----EKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~g-i~~~~~----~~g~~~~~~l~~~-~~----~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
.+|.++..+.+.++++++| +..... .+...+.+.++.. .+ ...++-..++ ...++++||.+.+|.. .
T Consensus 265 ~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gi~i~~G~~--~ 341 (374)
T TIGR01365 265 IARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKEL-ISTLEKEGVAYDIGSY--R 341 (374)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHH-HHHHHHCCEEEecccc--c
Confidence 8888999999999999998 665542 1222333444321 11 0011111234 4445566999988753 2
Q ss_pred CCCCEEEEEe-ccCCHHHHHHHHHHHHHHH
Q 011801 396 TEPGWFRVCF-ANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 396 ~~~~~~Rl~~-~~~~~e~l~~~l~~l~~~~ 424 (477)
..+..|||+. +.+++++++.++..|.=+.
T Consensus 342 ~~~~~fRIg~~G~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 342 DAPSGLRIWCGATVEKSDLECLCPWLDWAF 371 (374)
T ss_pred cCCCceEEecCCcCCHHHHHHHHHHHHHHH
Confidence 3346899965 5579999999999987544
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=120.30 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=166.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc---c---hHHHHhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA---A---FDRDLSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~---~---~~~~~~~~~g~~~~ 161 (477)
+..+++.+|++.+ .+..+++++++.|+.+++.+ +.+||.|++.+..|. + +...++.. |++++
T Consensus 124 ~~~le~~lA~l~g----------ae~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~-G~~~~ 191 (454)
T TIGR00474 124 YSHVEGLLCELTG----------AEDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVMEQS-GAKLV 191 (454)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHHHc-CCEEE
Confidence 4688889999886 23355677778889888865 478999999986642 2 12234545 99999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc--c--cCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL--G--TTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt--G--~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.++.+. ..+++++++++.+ ++++|++.+++|++ | ...+ +++|+++|+++|+.+|+|.....+.
T Consensus 192 ~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~ 258 (454)
T TIGR00474 192 EVGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLV 258 (454)
T ss_pred EeCCCC----CCCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 887542 2478889988854 79999999999995 6 4667 8889999999999999997632110
Q ss_pred ----cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchH----HHHH
Q 011801 238 ----FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQ----TQYL 307 (477)
Q Consensus 238 ----~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~----~q~~ 307 (477)
|+-+....+.... ..+..++++|.+|.+|-| ..|++++.++.+. .+++..-. .-+.-. .+..
T Consensus 259 ~~~~~gl~~~p~~~~~~-----~~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i~-~l~~~~l~r~lr~~k~~la~l~~~ 330 (454)
T TIGR00474 259 DLSRYGLPDEPTVQEVI-----AAGVDLVTFSGDKLLGGP--QAGIIVGKKELIE-RLKKNPLTRALRVDKLTLAALEAT 330 (454)
T ss_pred cchhccCCCCcccccHh-----HcCCCEEEecCccccCCC--eEEEEEECHHHHH-hhhhchhHHHHhhChHHHHHHHHH
Confidence 1100101111121 224458889999998634 5899999665442 22211000 001111 1223
Q ss_pred HHHhcCChh-hH----HHHHHHHHHHHHHHHHHHHHHHhhC---CC--eEecCC----ce---------EEEEeeccchh
Q 011801 308 LASMLSDDE-FV----DNFLVETSKRLAKRHHNFTKGLEQV---GI--NCLKSN----AG---------LFFWMDLRHLL 364 (477)
Q Consensus 308 ~~~~L~~~~-~~----~~~~~~~~~~l~~r~~~l~~~L~~~---gi--~~~~~~----~g---------~~~~~~l~~~~ 364 (477)
+..++...+ +. -+.+....+++.++...+.+.|++. ++ ++.+.. +| +-+-++.. ..
T Consensus 331 l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-~~ 409 (454)
T TIGR00474 331 LRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-GL 409 (454)
T ss_pred HHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-CC
Confidence 333333221 11 1223333456667777788888763 22 333222 12 12222211 11
Q ss_pred hccCchHHHHHHHHHHHhcC--eEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 365 KEKTLEGEIALWRTIVNDVK--LNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 365 ~~~~~~~e~~l~~~ll~~~g--I~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
+ ..++.+ .+++.. |..+ ..++.+-+-+..+.+++++.++++|
T Consensus 410 ~------~~~l~~-~lr~~~~~ii~r-------~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 410 S------AEKLEA-RLRELPPPIIGR-------IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred C------HHHHHH-HHhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 1 113433 344434 3332 3467788888877888888888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-12 Score=123.29 Aligned_cols=297 Identities=20% Similarity=0.215 Sum_probs=194.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..++.+.+|+|++. ++.+++.-| -..+...+.+|++||.-|+-..-.+..+...++.. |+.+.-+..+
T Consensus 184 hkelE~l~A~f~g~---------e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLS-gAtiRVfkHN- 251 (519)
T KOG1357|consen 184 HKELEELVARFLGV---------EDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLS-GATTRVFRHN- 251 (519)
T ss_pred HHHHHHHHHHhcCC---------cceEEEecc-ccccccCcceeecCCcceeeccccchheecccccc-CceEEEEecC-
Confidence 57899999999873 677888777 55677788899999999999998898888778877 8887766643
Q ss_pred CCCcccCHHHHHHHHHHHHHhC-CCe-----eEEEE-eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 168 SNNFKITREALEAAYERAQEAS-INI-----KGLII-TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~-~~~-----k~vii-~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
|...||+.++++...+ +++ |.+++ ..-..--|.+.. +.+++++++++..+++.||+++.-..+
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g- 321 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMG- 321 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccC-
Confidence 5778888887654322 111 22222 233456677766 888999999999999999999854332
Q ss_pred CCcccHHHhhhhccC-CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---cC--CCchHHHHHHHHhcC-
Q 011801 241 PKFTSVAEVIQEMDC-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---FG--LVSSQTQYLLASMLS- 313 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~-~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---~~--~vs~~~q~~~~~~L~- 313 (477)
+....+.++.. + ..+..+.+++|.|++|..| ||+.++++ +++.++..+. +. ..++.+|+.+..+.-
T Consensus 322 ~tGrgvce~~g---~d~~dvDImMGtftKSfga~G---Gyiagsk~-lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i 394 (519)
T KOG1357|consen 322 ATGRGVCEYFG---VDPEDVDIMMGTFTKSFGAAG---GYIAGSKE-LIDYLRTPSPSALYATSLSPPVAQQILTSVKHI 394 (519)
T ss_pred CCCcceeeccC---CCchhheeecceehhhccccc---ceecCcHH-HHhhhccCCCceeecccCChHHHHHHHHHHHhh
Confidence 22223322221 1 2355677899999999888 89888554 5555543322 11 133456665544322
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEe--eccchhhccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 314 -DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWM--DLRHLLKEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 314 -~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~--~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
..+. .+.-++..++++++..++...|++.|+-++..+....+-+ -.+.... .+-+.++++ +|.+.-+
T Consensus 395 ~G~dg-t~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k~~--------~f~r~~l~~-nigvVvv 464 (519)
T KOG1357|consen 395 MGEDG-TNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAKIV--------AFSREMLER-NIGVVVV 464 (519)
T ss_pred cCCCc-ccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCccccc--------HHHHHHHhc-CceEEEE
Confidence 2222 3445677788999999999999999988887666533222 1221111 344566655 5544322
Q ss_pred CCCC--CCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 391 SSFQ--CTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 391 ~~f~--~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
.|. +.-.+.+|+|.+.. +.|+++.+++.+.+.=
T Consensus 465 -gfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 465 -GFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred -eCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 233 23356789999764 8899999888877654
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=124.77 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-HhhhCCcEEEEEecc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-LSWRTGVQIVPVHCD 166 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-~~~~~g~~~~~v~~~ 166 (477)
..+..+.+|+.++ ....-+++||+|.++.+++.+++.+||.||++.-++-..... +.+. |+..+.+...
T Consensus 176 i~eAq~~AA~~fg---------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLs-Ga~PVYl~P~ 245 (720)
T PRK13578 176 AKDAQKHAAKVFN---------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQA-GATPVYLETA 245 (720)
T ss_pred HHHHHHHHHHHhC---------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHc-CCeEEEeecc
Confidence 4566666777775 234688899999999999999999999999999999988774 6666 9999888754
Q ss_pred CCCCcc----cCHHH-----HHHHHHHH-HH---hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHH-HHhcCeEEEeccc
Q 011801 167 ISNNFK----ITREA-----LEAAYERA-QE---ASINIKGLIITNPSNPLGTTLDRDTLKSLVSF-INDKNIHLVCDEI 232 (477)
Q Consensus 167 ~~~~f~----i~~~~-----l~~~~~~~-~~---~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~-~~~~~~~lI~De~ 232 (477)
- +.|+ ++.+. +++++++. .+ .....|++++++| +-.|.+++ ++.|++. ++.++ .|++||+
T Consensus 246 ~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~yd---i~~I~~~~~h~~~-~llvDEA 319 (720)
T PRK13578 246 R-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYN---ARQVVDKIGHLCD-YILFDSA 319 (720)
T ss_pred c-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeec---HHHHHHHhhccCC-cEEEeCc
Confidence 3 3344 35444 78777654 11 0112589999988 66899999 7777777 56677 8999999
Q ss_pred ccccc-cCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE-EEEeCC
Q 011801 233 YAATV-FSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG-IVYSFN 284 (477)
Q Consensus 233 y~~~~-~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG-~i~~~~ 284 (477)
|.+.. |... .+.... + . .+-+...++++.|.+|.+ |++--+ +|...+
T Consensus 320 hgah~~F~p~~~~~p~~a-l-~-~GaD~p~i~v~QStHKtL--~alTQaS~LHvk~ 370 (720)
T PRK13578 320 WVGYEQFIPMMADCSPLL-L-E-LNENDPGIFVTQSVHKQQ--AGFSQTSQIHKKD 370 (720)
T ss_pred chhhhccCcccccCChhh-h-h-cCCCCCCeEEEEChhhcc--hhhhhHhhhhcCC
Confidence 98752 4321 122111 1 1 111223468899999988 566544 454533
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-11 Score=118.67 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=163.5
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCcc---CCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEcCC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTF---DPDRIVMGGGATGANELIMFCLAN--------PG-----D-AFLVPSP 143 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~---~~~~i~~t~G~t~al~~i~~~l~~--------~G-----d-~vlv~~P 143 (477)
.|...+...++.+.+.+|+.+..|.+-.. ....-++|+|+|+++..++.+..+ .| . .|++.+-
T Consensus 70 ~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~ 149 (373)
T PF00282_consen 70 TWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQ 149 (373)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETT
T ss_pred ccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Confidence 34334457899999999999988743211 124678999999999887755311 12 2 4556665
Q ss_pred CccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 144 ~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
++..+...+.+. |+.++.|++++ ++++|+++|++++++..++|..+-+|+.+-.+..||.+=+ +++|.++|+++
T Consensus 150 aH~S~~Kaa~~l-Glg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~---l~~i~~i~~~~ 223 (373)
T PF00282_consen 150 AHYSIEKAARIL-GLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP---LEEIADICEKY 223 (373)
T ss_dssp S-THHHHHHHHT-TSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S---HHHHHHHHHHC
T ss_pred cccHHHHhccee-eeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC---HHHHhhhcccc
Confidence 788888888887 99999999985 6789999999999987766655556777778889999966 88899999999
Q ss_pred CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-HHHHhccc-----
Q 011801 224 NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN-CGRKMSSF----- 297 (477)
Q Consensus 224 ~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~-~~~~~~~~----- 297 (477)
|+|+.+|.+|++..+-.+.+......++ .-+ -+.-+++|.++ ..+.+|+++..++.... .......|
T Consensus 224 ~~wlHVDaA~gg~~~~~~~~~~~~~gi~----~ad--Sit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~ 296 (373)
T PF00282_consen 224 NIWLHVDAAYGGSALLSPEYRHLLFGIE----RAD--SITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDD 296 (373)
T ss_dssp T-EEEEEETTGGGGGGHCTTGGGGTTGG----GES--EEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred ceeeeecccccccccccccccccccccc----ccc--ccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcccc
Confidence 9999999999984443333333222222 112 34459999997 66799999998765432 22111111
Q ss_pred ------------C-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCceE
Q 011801 298 ------------G-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNAGL 354 (477)
Q Consensus 298 ------------~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~g~ 354 (477)
+ ..|. ...++..++.-..+=.+-+++..++..+..+++.+.|++. ++++.. +.-+.
T Consensus 297 ~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~ 367 (373)
T PF00282_consen 297 RESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNI 367 (373)
T ss_dssp SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSE
T ss_pred cccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceE
Confidence 1 1122 2222222222111112234555666667778899999887 466653 44443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-10 Score=121.39 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..+..+.+|+.++ ....-++++|+|.++.+++.+++.+||.||++.-++-.....+.+. |+..+.+....
T Consensus 197 i~eAe~~aA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLils-ga~PVYl~P~~ 266 (713)
T PRK15399 197 HLEAEEYIARTFG---------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMS-DVVPIWLKPTR 266 (713)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeeEEecccc
Confidence 4566666777765 2346888999999999999999999999999999999888877776 99988886443
Q ss_pred CCCcc----cCH-----HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEE-Eecccccccc
Q 011801 168 SNNFK----ITR-----EALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHL-VCDEIYAATV 237 (477)
Q Consensus 168 ~~~f~----i~~-----~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~l-I~De~y~~~~ 237 (477)
+.|+ ++. +.+++++++..+. .+++++++++| +-.|.+++ ++.|++.| |+.+ ++||+|.+..
T Consensus 267 -n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd---~~~I~~~~---g~~~ilvDEAhgah~ 337 (713)
T PRK15399 267 -NALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYN---TDWIKQTL---DVPSIHFDSAWVPYT 337 (713)
T ss_pred -cccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeC---HHHHHHHh---CCCEEEEeccchhhh
Confidence 3443 345 8888888764321 24578999999 77899999 55566666 4555 6999998752
Q ss_pred -cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE-EEEeCC
Q 011801 238 -FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG-IVYSFN 284 (477)
Q Consensus 238 -~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG-~i~~~~ 284 (477)
|.. .+.+...+... +.....++++.|.+|.+ |++.-+ +|....
T Consensus 338 ~F~p-~~~~~sam~~~-~~aD~~i~~tQStHKtL--~alTQaS~iHvk~ 382 (713)
T PRK15399 338 HFHP-IYQGKSGMSGE-RVPGKVIFETQSTHKML--AAFSQASLIHIKG 382 (713)
T ss_pred hcCc-ccCCcChhhCC-CCCCeeeeeeeehhccc--cccchheeeeecC
Confidence 332 12212222110 00123345689999988 676644 455533
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-10 Score=115.15 Aligned_cols=331 Identities=11% Similarity=0.143 Sum_probs=166.9
Q ss_pred CCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 32 HPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 32 ~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
..+.+.+..||+..+ .+.+ +.+.+.+++++.-+ ....|... ...+..+|+.+.+...
T Consensus 42 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-------------~~~~~~~~---~~~~~~la~~l~~~~p--- 102 (431)
T PRK06209 42 VWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQ-------------DGCNFTRP---SAIELDAAESFLELID--- 102 (431)
T ss_pred EEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHH-------------hCcCCCCC---CHHHHHHHHHHHHhCC---
Confidence 334556677888543 3444 34667776666321 12223211 2233334444433211
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhc-CCC-CeEEEc-CCCccchHHHH----hhhCCcE--E--EEEeccCCCCcccCHH
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLA-NPG-DAFLVP-SPYYAAFDRDL----SWRTGVQ--I--VPVHCDISNNFKITRE 176 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~-~~G-d~vlv~-~P~y~~~~~~~----~~~~g~~--~--~~v~~~~~~~f~i~~~ 176 (477)
..+.+++++++++|++.+++.-. -.| ..|+.. .-.|.++.... ....|.. . ..+.+. + -|++
T Consensus 103 --~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~-~d~~ 175 (431)
T PRK06209 103 --GADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR----Y-NDIA 175 (431)
T ss_pred --ccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC----C-CCHH
Confidence 13689999999999999987531 134 345443 22332211100 0000110 0 011111 1 1688
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC
Q 011801 177 ALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~ 256 (477)
++++++++. ..++.+|++ -|. .|...+.+.+++|.++|++||+++|+||++.++.+.. ....... +..
T Consensus 176 ~l~~~l~~~---~~~~aavi~-Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~---~g~~~~~---gv~ 243 (431)
T PRK06209 176 SLEALFEDH---PGRIACVIL-EPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM---RGAQKLY---GIV 243 (431)
T ss_pred HHHHHHHhC---CCCEEEEEE-ccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc---chhhHHh---CCC
Confidence 898888642 225655555 452 3446778889999999999999999999997653221 1111111 112
Q ss_pred CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH--HHH---hccc-----CCCchHHHHHHHHhc---CChhhHHHHHH
Q 011801 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC--GRK---MSSF-----GLVSSQTQYLLASML---SDDEFVDNFLV 323 (477)
Q Consensus 257 ~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~--~~~---~~~~-----~~vs~~~q~~~~~~L---~~~~~~~~~~~ 323 (477)
+| +.+++|.+| .|+.+|+++++++ +.+. ... ...+ ...+++...++.+.| .+.+.
T Consensus 244 PD----i~t~gK~lg-gG~p~~av~~~~~-i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~------ 311 (431)
T PRK06209 244 PD----LSCFGKALG-NGFAVSALAGKRE-YMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDV------ 311 (431)
T ss_pred cc----eeeehhhhc-CCcccEEEEEHHH-HHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCH------
Confidence 33 357899999 7899999999554 4443 110 1111 112334433333333 23222
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCeEecCCceEEEEeecc--chhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 011801 324 ETSKRLAKRHHNFTKGLE----QVGINCLKSNAGLFFWMDLR--HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE 397 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~----~~gi~~~~~~~g~~~~~~l~--~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~ 397 (477)
.+++.++-+++.+.|+ +.++.......|..+-+.+- .........-...+++.+++ .||.+.|
T Consensus 312 --~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~-------- 380 (431)
T PRK06209 312 --IERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS-------- 380 (431)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc--------
Confidence 2233333344444443 34543211111222211111 00001110111145566555 5997621
Q ss_pred CCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 398 PGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 398 ~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++. ..+++++++++++|.+++...
T Consensus 381 ---l~is~-~ht~~dId~~l~~l~~~l~~~ 406 (431)
T PRK06209 381 ---LVVSY-AHGDADIERTIDAVHGALGVY 406 (431)
T ss_pred ---ccccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 46663 359999999999999999764
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-10 Score=114.43 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=152.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCC------CeEEEcCCCccchHHHHhhhCCcEE-----EE------Eec
Q 011801 111 PDRIVMGGGATGANELIMFCLA--------NPG------DAFLVPSPYYAAFDRDLSWRTGVQI-----VP------VHC 165 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--------~~G------d~vlv~~P~y~~~~~~~~~~~g~~~-----~~------v~~ 165 (477)
-+++++++++++|++.+++... ..| .+|+...-+|++....+...+|... .+ ++.
T Consensus 110 ~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08297 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 189 (443)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCC
Confidence 3689999999999999987651 122 5799999888876543332222110 00 110
Q ss_pred cCCCCcc--------c------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEec
Q 011801 166 DISNNFK--------I------TREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 166 ~~~~~f~--------i------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
.. ..|. . +++++++.+.+ ...++.+|++.--..-.|. ..+.+.+++|.++|++||+++|.|
T Consensus 190 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~D 265 (443)
T PRK08297 190 PK-LRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFD 265 (443)
T ss_pred CC-CCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 00 0000 0 12334444432 2346777666533334454 467888999999999999999999
Q ss_pred ccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH----H----HhcccCCCch
Q 011801 231 EIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG----R----KMSSFGLVSS 302 (477)
Q Consensus 231 e~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~----~----~~~~~~~vs~ 302 (477)
|++.++...+..+ .. +. .+..+| ++ +|+|.++ .| |.+.+ ++ +.... . ...+|+ .++
T Consensus 266 EV~tGfGRtG~~~-a~-~~---~gv~PD--iv--~~gK~l~-~~---a~l~~-~~-i~~~~~~~~~~~~~~~~T~~-gnp 329 (443)
T PRK08297 266 EVQTGVGLTGTAW-AY-QQ---LGVRPD--IV--AFGKKTQ-VC---GIMAG-RR-VDEVEDNVFAVSSRINSTWG-GNL 329 (443)
T ss_pred chhhccCccchHH-HH-Hh---cCCCCC--EE--Eeccccc-cc---ceecc-hH-HHHhhhhhccCccccCCCCC-ccH
Confidence 9998754433321 11 11 111334 22 6799874 21 34433 33 22111 1 112222 455
Q ss_pred HHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-Ce-EecCCceEEEEeeccchhhccCchHHHHHHH
Q 011801 303 QTQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-IN-CLKSNAGLFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 303 ~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~-~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
++..++.+.|+ ..++ -+...+.-++++++.+.+ .++.+ +. .... .|+++.+.++.. .....++.
T Consensus 330 l~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~L~~l---~~~~~~~~~~vrg-~G~~~~i~~~~~------~~~~~~~~ 398 (443)
T PRK08297 330 VDMVRARRILEVIEEDGL-VENAARQGEYLLARLEEL---AAEFPAVVSNVRG-RGLMCAFDLPTT------ADRDEVIR 398 (443)
T ss_pred HHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHH---HHHCCCcceeeec-cceEEEEEecCH------HHHHHHHH
Confidence 66555555554 2222 112222223333222222 22222 21 2223 467888888631 11124666
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 378 TIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.++ ++||++.|+. ...+|++.+. ++++++++++++|.+++++
T Consensus 399 ~l~-~~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 399 RLW-EEGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred HHH-HCCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 666 5699998752 2458887654 4999999999999999865
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-10 Score=122.00 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=172.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCC--CeEEEcCCCccchHHHHhhh---CCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPG--DAFLVPSPYYAAFDRDLSWR---TGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~G--d~vlv~~P~y~~~~~~~~~~---~g~~~~ 161 (477)
+.+++..||++.+ .+++++-++.|+|.+.+.++.++ ..+| |+|++++-.|+.....++.+ .|++++
T Consensus 150 l~~~Qt~ia~LtG--------~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~ 221 (993)
T PLN02414 150 LLNYQTMITDLTG--------LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVV 221 (993)
T ss_pred HHHHHHHHHHHhC--------CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEE
Confidence 4567777888876 78999999999999999888776 3444 78999999999876554322 389998
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++.. + .. +..+-++++.+| |.+|.+.+ +++|++.|+++|+++++ .+.. ..-.
T Consensus 222 ~v~~~~~-----~------~~------~~~v~~vlvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad~---lal~ 276 (993)
T PLN02414 222 VADEKDF-----D------YS------SGDVCGVLVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATDL---LALT 276 (993)
T ss_pred Eecchhh-----c------cc------cCceEEEEEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EECH---HHhc
Confidence 8886421 1 00 113445555555 56999988 88999999999999998 3332 1111
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCccc---CCCCceEEEEEeCCHHHHHHHH-Hhcc---------------------
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDM---GLPGFRVGIVYSFNDTVVNCGR-KMSS--------------------- 296 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~---g~~G~RvG~i~~~~~~i~~~~~-~~~~--------------------- 296 (477)
...+.. ..+..+++++..|.. |..|-+.|++++.++... .+. .+..
T Consensus 277 ~l~~pg--------e~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r-~~PgriVG~s~d~~g~~~~~l~LqtReqh 347 (993)
T PLN02414 277 MLKPPG--------EWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR-LMPGRIIGVSVDSSGKPALRMAMQTREQH 347 (993)
T ss_pred CCCCHh--------hccCcEEEECCCccccCCCCCCCCeeEEEECHHHHh-hCCCcccCcccCCCCCcccccccccccch
Confidence 111222 225567889988886 345566999999665422 221 1100
Q ss_pred ----cCCCchHHHHHHHHhcCChh--h-HHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccC
Q 011801 297 ----FGLVSSQTQYLLASMLSDDE--F-VDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKT 368 (477)
Q Consensus 297 ----~~~vs~~~q~~~~~~L~~~~--~-~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~ 368 (477)
.++.+.-+..++.+.+..-. + -..-+++..+++.+...++.++|.+.|+++..+. .+ -+.++++.
T Consensus 348 iRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~-~vt~~~~~------ 420 (993)
T PLN02414 348 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFD-TVKVKCSD------ 420 (993)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcC-eEEEecCC------
Confidence 11122212222222221100 0 0112456677788888889999988887765432 12 22334331
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
..++.+++. +.||.++... .+.+|+|+... ++++++.+++.|+.
T Consensus 421 ---~~~v~~~L~-~~gI~l~~~~------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 ---ADAIADAAA-KVGINLRVVD------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ---HHHHHHHHH-HCCCeeEEec------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 124566665 5599886431 35699999876 89999999999974
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-10 Score=122.78 Aligned_cols=276 Identities=14% Similarity=0.145 Sum_probs=172.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCC--CCeEEEcCCCccchHHHHhh---hCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANP--GDAFLVPSPYYAAFDRDLSW---RTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~--Gd~vlv~~P~y~~~~~~~~~---~~g~~~~ 161 (477)
+.++++.++++.+ .++.++-+..++|.+.+.++.++ ..+ +++|++++-.|+.....++. ..|++++
T Consensus 123 l~~~Qt~la~LtG--------~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~ 194 (954)
T PRK05367 123 LLNFQTMVADLTG--------LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVV 194 (954)
T ss_pred HHHHHHHHHHHHC--------CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 4466666777765 68899999999999999888776 344 48999999999987654322 2399999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+.+ ++ +.++.++++.+| |-+|.+.+ +++|++.|+++|+++++|..........
T Consensus 195 ~~~~~~d----~~--------------~~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l~- 251 (954)
T PRK05367 195 VGDAAKA----LD--------------HDDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLLT- 251 (954)
T ss_pred EecCccC----CC--------------cccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCCC-
Confidence 8886431 11 115667777776 78999987 8999999999999999987553221111
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcc---cCCCCceEEEEEeCCHHHHHHHH-Hhcc---------------------
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKD---MGLPGFRVGIVYSFNDTVVNCGR-KMSS--------------------- 296 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~---~g~~G~RvG~i~~~~~~i~~~~~-~~~~--------------------- 296 (477)
+.. ..+..++++|..|. +|+.|--.|++++.++.. ..+. .+..
T Consensus 252 ---~pg--------e~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~-r~lpgrivG~s~d~~g~~~~~lalqtReqh 319 (954)
T PRK05367 252 ---PPG--------EMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYK-RSMPGRIVGVSVDAAGNPALRLALQTREQH 319 (954)
T ss_pred ---Chh--------hcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHH-hhCCCCeeeeecccCCCccccccccccccc
Confidence 111 23556888999997 223344599999965432 2211 1000
Q ss_pred ----cCCCch-HHHHHHHHh--cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCc
Q 011801 297 ----FGLVSS-QTQYLLASM--LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL 369 (477)
Q Consensus 297 ----~~~vs~-~~q~~~~~~--L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~ 369 (477)
-++.+. ..|.+++.+ +.-.-+-..-+++..+++.....++.++|++.|+++....-.--+.++++.
T Consensus 320 iRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~------- 392 (954)
T PRK05367 320 IRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGG------- 392 (954)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCC-------
Confidence 011111 112221111 100000012256667778888888899998888776533210112233321
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHH
Q 011801 370 EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIA 421 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~ 421 (477)
...++.++++ +.||+++.- .++.+|+|+... ++++++.+++.|.
T Consensus 393 -~~~~i~~~l~-~~gi~~~~~------~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 393 -DAAAVLARAL-AAGINLRRV------DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -CHHHHHHHHH-HCCceeccc------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 1124666665 459988321 145799999876 8999999999997
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-09 Score=110.51 Aligned_cols=278 Identities=14% Similarity=0.131 Sum_probs=151.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------------------------CC---CeEEEcCCCccchHHHHhhhCCcE---
Q 011801 112 DRIVMGGGATGANELIMFCLAN--------------------------PG---DAFLVPSPYYAAFDRDLSWRTGVQ--- 159 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~--------------------------~G---d~vlv~~P~y~~~~~~~~~~~g~~--- 159 (477)
+++++++++++|++.+++.... +| ..|+...-+|++....+...+|..
T Consensus 123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~ 202 (464)
T TIGR00699 123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH 202 (464)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 6899999999999999876410 11 269999999987654322221211
Q ss_pred --------EEEEeccC-CCCcc-----------cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHH
Q 011801 160 --------IVPVHCDI-SNNFK-----------ITREALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVS 218 (477)
Q Consensus 160 --------~~~v~~~~-~~~f~-----------i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~ 218 (477)
...+|... ...+. -+++.+++++++ ...++.+|++.--..-.|.+. +.+-+++|.+
T Consensus 203 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~ 279 (464)
T TIGR00699 203 KLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRD 279 (464)
T ss_pred ccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHH
Confidence 11122110 00000 024455565543 234677777654455567766 6778999999
Q ss_pred HHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC--CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH--HHh
Q 011801 219 FINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN--RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG--RKM 294 (477)
Q Consensus 219 ~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~--~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~--~~~ 294 (477)
+|+++|+++|+||+..++...+..+. .+.. +.. +| + .+++|.+|-.| ++++. +.+.... ...
T Consensus 280 lc~~~g~lLI~DEV~tGfGrtG~~fa--~e~~---gv~~~PD--i--~t~gK~lg~gG----~~~~~-~~~~~~~~~~~~ 345 (464)
T TIGR00699 280 ITKKHNVAFIVDEVQTGVGATGKFWA--HEHW---NLDDPPD--M--VTFSKKFQTAG----YFFHD-PAFRPNKPYRQF 345 (464)
T ss_pred HHHHcCCEEEEeeeeeCCCCCcchhH--HHhc---CCCCCCC--E--EEehhhhccCC----ccccc-hhccCCCCcccc
Confidence 99999999999999987533332211 1111 111 33 2 47799996244 34442 2211100 011
Q ss_pred cccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC--CeEe-cCCceEEEEeeccchhhccC
Q 011801 295 SSFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVG--INCL-KSNAGLFFWMDLRHLLKEKT 368 (477)
Q Consensus 295 ~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g--i~~~-~~~~g~~~~~~l~~~~~~~~ 368 (477)
..|+ .++.+..++.+.|+ +.++ -+...+.-++++++.+.+. ++++ +... ....|+++-++++..
T Consensus 346 ~T~~-gnp~~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~L~~l~---~~~~~~i~~vRg~G~Glm~gie~~~~----- 415 (464)
T TIGR00699 346 NTWM-GDPSRALILREIIQEIKRKDL-LENVAHVGDYLYTGLEDLQ---KKYPEFIQNLRGKGRGTFIAWDTPDE----- 415 (464)
T ss_pred cCCC-CCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHH---HhCCCceeeecccCeEEEEEEecCCH-----
Confidence 2222 34444444444443 3332 1222222233333222221 2233 1112 224578888887531
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
.....+++.+++ .||++.+. +...+||..... ++++++.++++|.+++
T Consensus 416 -~~~~~i~~~~~~-~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 416 -AKRDKLLKKARN-NGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred -HHHHHHHHHHHH-CCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 111245555655 59999753 246799998764 9999999999998753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=101.23 Aligned_cols=326 Identities=18% Similarity=0.224 Sum_probs=215.0
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC-----CCeEEEcCCCccchHHHHh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP-----GDAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~-----Gd~vlv~~P~y~~~~~~~~ 153 (477)
...|....+...|.+++.+.++ -+.++.|.-+.+|=.+++..+.++ |.+..+++.+|....+.-.
T Consensus 72 DEAYagsrs~~~L~~avkdifG----------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~ 141 (471)
T COG3033 72 DEAYAGSRSYYALADAVKDIFG----------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHI 141 (471)
T ss_pred chhhcccccHHHHHHHHHHhcC----------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHH
Confidence 3468888888999999999886 245777888888888887777654 5556666677665555543
Q ss_pred hhCCcEEEEEeccCCCC--------cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcC
Q 011801 154 WRTGVQIVPVHCDISNN--------FKITREALEAAYERAQEASINIKGLIITNPSN-PLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 154 ~~~g~~~~~v~~~~~~~--------f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~~~~~~~l~~l~~~~~~~~ 224 (477)
...|..+.-++.++..+ ..+|++.|++.+++.-.+ ++..|+++--+| -.|+..|.+.++++.++|++|+
T Consensus 142 ~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 142 QINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred HhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 34477776666554222 246899999999876333 456666665555 6789999999999999999999
Q ss_pred eEEEeccccccc--ccC-----CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHH---HHHHHHH
Q 011801 225 IHLVCDEIYAAT--VFS-----SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDT---VVNCGRK 293 (477)
Q Consensus 225 ~~lI~De~y~~~--~~~-----~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~---i~~~~~~ 293 (477)
+.++.|.+.-.. .|- +-.-+|+.++..++---.| ..+-|.-|+- +.- + |++...++. +-..++.
T Consensus 220 ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD--~~~mS~KKD~-lvn--mGGfl~~~D~~~fDvy~~~~~ 294 (471)
T COG3033 220 IPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYAD--GCTMSAKKDG-LVN--MGGFLCFKDDSFFDVYEECRT 294 (471)
T ss_pred CcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhh--hheeeccccc-eec--cccEEEecCccHHHHHHHHHh
Confidence 999999875211 121 1124788887665310011 2344666763 221 3 566665552 3332322
Q ss_pred -------hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh-
Q 011801 294 -------MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK- 365 (477)
Q Consensus 294 -------~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~- 365 (477)
+.+|+..+.-...+++.-|.+.-- ..|++.+. . ..++|.++|++.|+++..|.||--++++....+.
T Consensus 295 ~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv---~-Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lph 369 (471)
T COG3033 295 LVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRV---A-QVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPH 369 (471)
T ss_pred heEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHH---H-HHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCC
Confidence 245666666555666655554211 23444433 2 2378999999999999999999888888765433
Q ss_pred --ccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-C----------CCEEEEEecc--CCHHHHHHHHHHHHHHHhhh
Q 011801 366 --EKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-E----------PGWFRVCFAN--MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 366 --~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~----------~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+.|..+ .|...|..+.||...--..|... . -..+|+.+.. .+.+.+|-.++.++++.++.
T Consensus 370 ip~eqFpaq-ala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 370 IPAEQFPAQ-ALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred CChhhCcHH-HHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 3344444 57778888999987665555321 1 1369999955 38999999999999998763
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-09 Score=100.73 Aligned_cols=358 Identities=14% Similarity=0.122 Sum_probs=195.3
Q ss_pred hhhhhhcCCC---------CCCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCC
Q 011801 21 DGWKAFDRNP---------FHPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHG 87 (477)
Q Consensus 21 ~~~~~~~~~~---------~~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G 87 (477)
.+|-.|+..| |..+.+...++|+-.+ .-.+ |.+.+.+.+.++-.. + .-....|... .
T Consensus 24 ~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~--l-------~H~t~~~~~~-p 93 (442)
T KOG1404|consen 24 PGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKK--L-------YHTTSGYLNP-P 93 (442)
T ss_pred cceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhh--h-------EEeeccccCC-c
Confidence 3466666665 3335566667776433 2222 444444444442111 0 0122345433 3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
..+|-++++..+- -+-..+++++++++|+++++... ....-.|+--.-+|.+......-.+|......+.
T Consensus 94 i~~~Ae~L~s~~P--------~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~ 165 (442)
T KOG1404|consen 94 IHDLAEALVSKLP--------GDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNF 165 (442)
T ss_pred HHHHHHHHHHhCC--------CCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccC
Confidence 5788888888764 23456999999999999988663 1222345666666665443322222332222111
Q ss_pred cC--------------CCCcccC-----H----HHHHHHHHHHHHhCC-CeeEEEEeCC-CCCcccC-CCHHHHHHHHHH
Q 011801 166 DI--------------SNNFKIT-----R----EALEAAYERAQEASI-NIKGLIITNP-SNPLGTT-LDRDTLKSLVSF 219 (477)
Q Consensus 166 ~~--------------~~~f~i~-----~----~~l~~~~~~~~~~~~-~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~ 219 (477)
+. -+-|.=+ . +++++.+.. .++ .+.+ ++.-| .---|.+ +++--+++..+.
T Consensus 166 ~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~---~~~~~vAa-fiaEtIqGvgG~v~~p~GYlka~~~~ 241 (442)
T KOG1404|consen 166 PGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILY---DGPETVAA-FIAETIQGVGGIVELPPGYLKAAYKV 241 (442)
T ss_pred CCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHh---cCCCceeE-EEeehhccCCccccCCchHHHHHHHH
Confidence 10 0111111 2 223333322 122 3444 44444 4445654 566679999999
Q ss_pred HHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-ccC
Q 011801 220 INDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFG 298 (477)
Q Consensus 220 ~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~~ 298 (477)
|+++|.++|.||+..++.-.+ .+++... .+.+--+-|++|.+| .|+.+|.++..++ |...+.+.. .|.
T Consensus 242 v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~--------h~v~PDIvTmAKgiG-nG~Pl~AVvtt~E-Ia~v~~~~~~~fn 310 (442)
T KOG1404|consen 242 VRKRGGLFIADEVQTGFGRTG-HMWGFES--------HGVVPDIVTMAKGIG-NGFPLGAVVTTPE-IADVLNQKSSHFN 310 (442)
T ss_pred HHHcCCEEEehhhhhcccccc-ccccccc--------cCCCccHHHHHhhcc-CCCcceeeecCHH-HHHHHHhcccccc
Confidence 999999999999999865555 4444322 233333559999999 9999999999554 555444433 332
Q ss_pred C--CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchh-hccCc-h
Q 011801 299 L--VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLL-KEKTL-E 370 (477)
Q Consensus 299 ~--vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~-~~~~~-~ 370 (477)
+ .++.+-.+..++|.--+ ++.++++. ++.-.+|.+.|.++ .+--.-..-|+++-+++-... +.... .
T Consensus 311 TyggnP~a~avg~aVL~Vik--ee~LqE~a---a~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~ 385 (442)
T KOG1404|consen 311 TYGGNPVACAVGLAVLKVIK--EENLQENA---AEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPAT 385 (442)
T ss_pred ccCCCchhHHHHHHHHHHHH--HHhHHHHH---HHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcch
Confidence 2 44555555555554322 22233322 23334444444433 221122345788877775432 11111 1
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHH
Q 011801 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRI 420 (477)
Q Consensus 371 ~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l 420 (477)
.+..+......+.|++|.-|..++. .|||..... |.++++.+++..
T Consensus 386 ~~~~~i~~~cke~Gvlvg~g~i~G~----vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 386 AEGAVIGEQCKELGVLVGKGGIHGN----VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHHHhCeeeecccccce----EEEecCCeeccHHHHHHHHHHH
Confidence 2223334445577999977766542 899988653 899997777755
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-09 Score=105.58 Aligned_cols=266 Identities=17% Similarity=0.144 Sum_probs=165.9
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCc--ccCHHHHHHHHHHHHHh
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNF--KITREALEAAYERAQEA 188 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f--~i~~~~l~~~~~~~~~~ 188 (477)
-+++.+|+|.+++.+...|+.+|+++++..-.+.+ +...++.. |...+-.... .++| -+++++++.
T Consensus 73 v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~-------- 142 (365)
T PLN02452 73 VLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKY-CKTNVIASGK-DEKYTKIPSVSEWEL-------- 142 (365)
T ss_pred EEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCCcEEEecC-CCCCCCCCChHHcCC--------
Confidence 46667899999999999999999988877655432 23445545 6533322211 1222 245555421
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
+.+++.|.+|+....||+.++. +.++. ++.+|+|.+.+ +...+ ..+.+. + + +..|..|
T Consensus 143 ~~~~~~v~~~hnETstGv~~~~--~~~i~------~~~lvVDa~Ss---~g~~p-idv~~~--------~-v-~~~saqK 200 (365)
T PLN02452 143 TPDAKFVHICANETIHGVEFKD--YPDVG------NVPLVADMSSN---FLSKP-VDVSKY--------G-V-IYAGAQK 200 (365)
T ss_pred CCCCcEEEECCCCCCCcEecCc--ccccC------CCeEEEECCcc---ccCcc-cCHHHc--------C-E-EEEeccc
Confidence 3367888888888899996431 43332 37899999987 44443 333322 3 2 3469999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHH-------------hcccCCCchHHHHHHHHhcCChhhHHH--HHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRK-------------MSSFGLVSSQTQYLLASMLSDDEFVDN--FLVETSKRLAKRH 333 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~-------------~~~~~~vs~~~q~~~~~~L~~~~~~~~--~~~~~~~~l~~r~ 333 (477)
.+|.|| +|+++.+++.+...... .+.+++.+...-+++...|+ ++.+ -++...++.++..
T Consensus 201 ~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~---~l~~~gGl~~~~~r~~~~a 275 (365)
T PLN02452 201 NVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFE---DLLAQGGLKAMEKRNIRKA 275 (365)
T ss_pred ccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHH
Confidence 999888 78888876655332111 11223344444455444443 2222 2677788888999
Q ss_pred HHHHHHHhhC-CC-eE-ecC--CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-
Q 011801 334 HNFTKGLEQV-GI-NC-LKS--NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN- 407 (477)
Q Consensus 334 ~~l~~~L~~~-gi-~~-~~~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~- 407 (477)
+++.+.|++. |+ .. ..+ .....+.+.++.. +.+.+|.+. +++.|+...+|..- -+.+|+++=+
T Consensus 276 ~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~-~~~~g~~~~~G~r~----~gg~R~s~yna 344 (365)
T PLN02452 276 DLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKE-AAKAGMVQLKGHRS----VGGMRASIYNA 344 (365)
T ss_pred HHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHHHHH-HHHCCCcccCCccc----cCceEEECcCC
Confidence 9999999885 66 11 111 2344555666642 122245444 55679999998643 2239998844
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 011801 408 MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 408 ~~~e~l~~~l~~l~~~~~~ 426 (477)
++.++++.+++.+++|-++
T Consensus 345 ~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 345 MPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 6999999999999999876
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=103.19 Aligned_cols=307 Identities=14% Similarity=0.108 Sum_probs=167.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-------CCCC-eEEEcCCCccchHHHHhhhCC--
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-------NPGD-AFLVPSPYYAAFDRDLSWRTG-- 157 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-------~~Gd-~vlv~~P~y~~~~~~~~~~~g-- 157 (477)
.-+|-+.+++...+ -+-++|++|+|+++|++++++... +|.. +|+.-...|++-.-..-...|
T Consensus 89 a~~LA~~L~~~aP~-------~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~ 161 (449)
T COG0161 89 AIELAEKLAELAPE-------GGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPV 161 (449)
T ss_pred HHHHHHHHHHhCCC-------CCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCch
Confidence 34555555555421 124689999999999999987642 2332 388888888753211111111
Q ss_pred -----------cEEEEEeccC---CCCcccC-------HHHHHHHHHHHHHhC-CCeeEEEEeCC-CC-CcccCCCH-HH
Q 011801 158 -----------VQIVPVHCDI---SNNFKIT-------REALEAAYERAQEAS-INIKGLIITNP-SN-PLGTTLDR-DT 212 (477)
Q Consensus 158 -----------~~~~~v~~~~---~~~f~i~-------~~~l~~~~~~~~~~~-~~~k~vii~nP-~N-PtG~~~~~-~~ 212 (477)
..+..++... .+.+..+ .++|++.+.+ ++ .++.+ +|.-| .. -.|..+++ .-
T Consensus 162 ~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAA-fI~EPv~g~agG~~~pp~~Y 237 (449)
T COG0161 162 ALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILE---HGPETIAA-FIVEPVVGGAGGMLVPPPGY 237 (449)
T ss_pred hhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEE-EEecccccccCCcccCChHH
Confidence 1111222211 1111112 3445555443 34 35665 44456 34 47876554 46
Q ss_pred HHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH
Q 011801 213 LKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR 292 (477)
Q Consensus 213 l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~ 292 (477)
|+++.++|++||+++|.||+-.++.-.++.|..-. .+..+| ++ +++|.++-.=+.+|.+++.++.......
T Consensus 238 l~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~-----~gi~PD--i~--~~aKGLT~GY~Pl~a~l~~~~I~~~~~~ 308 (449)
T COG0161 238 LKRVREICDKYGILLIADEVATGFGRTGKMFACEH-----AGIVPD--IL--CLAKGLTGGYLPLSAVLTSDRIYEAFSD 308 (449)
T ss_pred HHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhh-----cCCCCC--ee--eecccccccchhhHhHhhhHHHHHHHhc
Confidence 99999999999999999999988655555443321 122344 22 6789887333667777774443333333
Q ss_pred H-hcccC-----CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-C--CeEecCCceEEEEeeccc
Q 011801 293 K-MSSFG-----LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-G--INCLKSNAGLFFWMDLRH 362 (477)
Q Consensus 293 ~-~~~~~-----~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-g--i~~~~~~~g~~~~~~l~~ 362 (477)
. ...|. +.++++-+++.+-|+ .+++ +...++.++.-.++.+.|++ + + .--.-..-|++.-+++..
T Consensus 309 ~~~~~f~HG~TYsghPlacAaAla~L~---i~e~--e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~ 383 (449)
T COG0161 309 GDAGAFMHGHTYSGNPLACAAALANLD---ILEE--EDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVA 383 (449)
T ss_pred ccCCeeccCCccccCHHHHHHHHHHHH---HHHh--cCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEec
Confidence 2 22222 134444444333332 2110 11223333444555566654 1 1 111123457888888875
Q ss_pred hhhccC-chH-HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 363 LLKEKT-LEG-EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 363 ~~~~~~-~~~-e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
....+. |+. -.......+.++|+.++|... .+=++.... ++++++++++++++.+++
T Consensus 384 d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~-------~i~~~PPliit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 384 DKATKTPFEARVGARVRAAALERGLLIRPLGD-------VIYLMPPLIITREEIDELVDALREALDE 443 (449)
T ss_pred ccccccchhhhHHHHHHHHHHHCCeEEeecCC-------EEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 443332 111 122344455567999999732 344444443 899999999999999976
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=105.59 Aligned_cols=308 Identities=17% Similarity=0.230 Sum_probs=178.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
|+...=+.++.+.||+||+ ..+.|+.+.|-+ ++..++.|+++.||.|.+.+-........++.. .-.+.
T Consensus 135 YGt~DvHldlE~~iakF~G---------~E~aivYs~gF~-ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlS-RS~i~ 203 (467)
T KOG1358|consen 135 YGTIDVHLDLEKRIAKFMG---------TEDAIVYSYGFS-TIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLS-RSTIS 203 (467)
T ss_pred cccceeecccHHHHHHhhC---------Ccceeeeccccc-hhhhcchhhhccCcEEEEehhhhHHHHHHHhhh-hheeE
Confidence 6655556799999999998 356788877754 677788899999999888887766666666654 55555
Q ss_pred EEeccCCCCcccCHHHHHHHHHHH----HHhCC--Cee-EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 162 PVHCDISNNFKITREALEAAYERA----QEASI--NIK-GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~----~~~~~--~~k-~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
.+.- .|.+.++..+... ++... .++ .|++.--.-++|.+.+ +.+|+++..+|...||.||.|+
T Consensus 204 ~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~S 273 (467)
T KOG1358|consen 204 YFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLS 273 (467)
T ss_pred EecC-------CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccc
Confidence 4442 1566676555321 11111 223 3344444678999999 8888888889999999999998
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC-----CchHHHHHHH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL-----VSSQTQYLLA 309 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~-----vs~~~q~~~~ 309 (477)
-.+.+... ..+.+... .+ ..+-.++++|+.-+++..| |+.++ +..+.. ..++++.+. .++....++.
T Consensus 274 fG~lg~~G-rGvteH~~-v~-~~~iDiv~~sm~~alas~G---gFc~G-~~~i~~-hQrLSg~~Y~fSAslPp~la~aa~ 345 (467)
T KOG1358|consen 274 FGVLGKTG-RGVTEHFG-VP-ITDIDIVTASMETALASGG---GFCAG-KSFIAD-HQRLSGSGYCFSASLPPYLAGAAI 345 (467)
T ss_pred cccccccC-ccccccCC-CC-ccceeeeeecccccccccC---ceeec-ceeeEe-eeeccccceeeeccCchhhhhhHH
Confidence 44333211 11111111 00 2345678899998887666 77776 333322 222222211 1122222222
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHH----HHHHHHHHhcC
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEI----ALWRTIVNDVK 384 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~----~l~~~ll~~~g 384 (477)
..+.-.++ -.+..+.++.....+...|... ++.+..+.-...+.+.+.+.. ...+.|. +++...+.+ +
T Consensus 346 ~ai~i~~~----~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~--~s~e~e~~lL~eivd~~i~~-~ 418 (467)
T KOG1358|consen 346 KAILIEEW----NPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSY--GSREKEEKLLEEIVDKCIAE-G 418 (467)
T ss_pred HHHHHHhh----CcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccc--cchHHHHHHHHHHHHHHHhh-c
Confidence 22221111 1222333444444555566544 456665555556666665421 1223332 344445555 7
Q ss_pred eEEeCCCCCC----CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 385 LNVSPGSSFQ----CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 385 I~v~pg~~f~----~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+.+.-...-. +.-+..+|||+.. +++|+++++...|++...
T Consensus 419 ~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 419 VLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred ceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7765433221 2224579999955 699999999999988754
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-09 Score=107.02 Aligned_cols=276 Identities=13% Similarity=0.118 Sum_probs=149.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------C-C---CCeEEEcCCCccchHHHHhhhCCcE-EE----E--------E
Q 011801 111 PDRIVMGGGATGANELIMFCLA----------N-P---GDAFLVPSPYYAAFDRDLSWRTGVQ-IV----P--------V 163 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~----------~-~---Gd~vlv~~P~y~~~~~~~~~~~g~~-~~----~--------v 163 (477)
.+.+++++++++|++.+++.-. + + +.+|+...-+|++....+...+|.. .. + .
T Consensus 103 ~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 182 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCC
Confidence 3689999999999999987642 1 1 3679999988887653332222311 00 0 1
Q ss_pred ecc--C--CCCcc-c------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecc
Q 011801 164 HCD--I--SNNFK-I------TREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 164 ~~~--~--~~~f~-i------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
|.. + ...+. + +++++++.++. ...++.+|++.--..-.|.. .+.+.+++|.++|++||+++|+||
T Consensus 183 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 259 (431)
T TIGR03251 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDE 259 (431)
T ss_pred CcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 100 0 00000 0 12333334432 23478887776445556754 577889999999999999999999
Q ss_pred cccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH--------HhcccCCCchH
Q 011801 232 IYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR--------KMSSFGLVSSQ 303 (477)
Q Consensus 232 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~--------~~~~~~~vs~~ 303 (477)
++.++...+..+ .. +. .+..+| ++ +++|.+ +. .|++.. ++ +..... ....|+ .+++
T Consensus 260 V~tG~GrtG~~~-a~-~~---~gv~PD--i~--~~gK~~--~~--~g~~~~-~~-i~~~~~~~~~~~~~~~~T~~-gnpl 323 (431)
T TIGR03251 260 VQTGVGLTGTAW-AY-QQ---LGVQPD--IV--AFGKKT--QV--CGIMAG-RR-VDEVADNVFAVPSRLNSTWG-GNLV 323 (431)
T ss_pred chhccCccchHH-HH-Hh---cCCCCC--EE--EecccC--cc--ceEEec-ch-HHHhhhhcccCccccCCCCC-CCHH
Confidence 999754433221 11 11 112334 22 578986 32 355544 32 211111 112222 4555
Q ss_pred HHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 304 TQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 304 ~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
+..++.+.|+ +.++ .+.+++..+++.+ .|.+..++.+ +.......|+++.+.++.. .....+++.+
T Consensus 324 ~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~---~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l 393 (431)
T TIGR03251 324 DMVRATRILEIIEEERL-VDNARVQGAHLLA---RLHELAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQL 393 (431)
T ss_pred HHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH---HHHHHHHhCccceecccccceeEEEEeCCH------HHHHHHHHHH
Confidence 5555555544 2222 1122222222322 2222222232 3222223467777887632 1122466666
Q ss_pred HHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 380 VNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+ +.||.+.|.. ...+|++.+.. +++++++++++|.+
T Consensus 394 ~-~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 394 Y-REGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred H-hCCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 6 5699997742 24689888654 99999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=105.48 Aligned_cols=170 Identities=19% Similarity=0.257 Sum_probs=126.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..+..+-.|+.++. ...-++++|++.|+..++.+++.+||.||++..++-.....+-.. |+..+.+....
T Consensus 72 i~eAqe~aA~~fgA---------d~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glila-Ga~Pvyl~p~~ 141 (557)
T COG1982 72 IKEAQELAARVFGA---------DHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILA-GATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHHHHhCC---------CceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHc-CCceEEecCCC
Confidence 56777777777761 236888999999999999999999999999999998887776665 98887776543
Q ss_pred CCCc----ccCHHHHHHHHHHHHHhCCCe-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 168 SNNF----KITREALEAAYERAQEASINI-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 168 ~~~f----~i~~~~l~~~~~~~~~~~~~~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+..| .|+.+.+++++.+.+ .. |+++++|| +=.|++++ +++|++.+...++++.+||++... ++-.+
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~----~~~k~~vitnp-TYdGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~~~~ 212 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHP----DAEKLAVITNP-TYDGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FDFSP 212 (557)
T ss_pred CccccccCCCCHHHHHHHHHhCh----hhheeEEEecC-ccceEeec---HHHHHHHHhhcCceEEhhhcCccc-ccccc
Confidence 3223 568999999887643 33 88999988 55799999 788888888999999999998643 33322
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFN 284 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~ 284 (477)
..+.... +...++++.|.+|.++ ++. ..+|...+
T Consensus 213 ~l~~~~~------~~~~~~~tqS~HK~l~--alSQaS~iHv~~ 247 (557)
T COG1982 213 MLPESAL------NGGADFVTQSTHKLLA--ALSQASMIHVKD 247 (557)
T ss_pred cCcchhh------hcCceEEEechhhhhh--hhhhhHHHhhCC
Confidence 2222111 3577889999999984 444 44555543
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-08 Score=108.03 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=123.8
Q ss_pred CCeeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 190 INIKGLIITNP-SNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 190 ~~~k~vii~nP-~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
.++.+||+.-- ..-.|.++ +.+-+++|.++|+++|+++|.||++.++.-.+..|. .+.. +..+| ++ +++
T Consensus 583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa--~e~~---gv~PD--Ii--~~g 653 (817)
T PLN02974 583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESA--WELL---GCKPD--IA--CYA 653 (817)
T ss_pred CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhh--HHhc---CCCCC--EE--eec
Confidence 46777666532 46668765 677799999999999999999999998654454322 1111 22333 33 778
Q ss_pred cccCCCC-ceEEEEEeCCHHHHHHHHH--------h-cccCCCchHHHHHHHHhc---CChhhHHHHHHHHHHHHHHHH-
Q 011801 268 KDMGLPG-FRVGIVYSFNDTVVNCGRK--------M-SSFGLVSSQTQYLLASML---SDDEFVDNFLVETSKRLAKRH- 333 (477)
Q Consensus 268 K~~g~~G-~RvG~i~~~~~~i~~~~~~--------~-~~~~~vs~~~q~~~~~~L---~~~~~~~~~~~~~~~~l~~r~- 333 (477)
|.++ .| +.+|.+++.++ +.+.... . .+|+ .++++.+++.+.| ++.+..++ +.+..+++.+..
T Consensus 654 KgLt-gG~~Plaa~l~~~~-I~~~f~~~~~~~~~~hg~Ty~-gnpl~cAaala~L~~~~~~~~~~~-l~~~~~~l~~~l~ 729 (817)
T PLN02974 654 KLLT-GGLVPLAATLATEE-VFEAFRGPSKLDALLHGHSYT-AHPMGCAAAAKALQWYKDPSTNPN-LIPPGSRLRELWD 729 (817)
T ss_pred cccc-CCCCccEEEEEcHH-HHHhhccccccCCcccCCCCC-cCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHH
Confidence 9998 89 69999999555 4433321 0 1222 4555555554444 34333222 223333332221
Q ss_pred HHHHHHHhhCCCeEecCCceEEEEeeccchhhccCc--hHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCH
Q 011801 334 HNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL--EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDD 410 (477)
Q Consensus 334 ~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~--~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~ 410 (477)
+.+.+.|.++..-..-..-|+++-+++........+ .....+.+.++.+.||.++|.. +.+|+.... .++
T Consensus 730 ~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-------nvi~l~pP~~i~~ 802 (817)
T PLN02974 730 EELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-------NVVYLMCGPTTSP 802 (817)
T ss_pred HHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-------CEEEEeCCCCCCH
Confidence 233334444432111123467888888642111111 1112345555536799998741 468875544 489
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|.+.+
T Consensus 803 e~l~~~~~~l~~~~ 816 (817)
T PLN02974 803 ETCTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-08 Score=106.13 Aligned_cols=199 Identities=17% Similarity=0.184 Sum_probs=139.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC----C-----------------------
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN----P----------------------- 134 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~----~----------------------- 134 (477)
|.-..+...+.+.+.+++.+..| +++..-.+|+|+|+|+...+.+-.+ |
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G----~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~ 190 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMG----YKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMP 190 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhC----CCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccc
Confidence 33345678999999999999877 3344566899999999876544211 0
Q ss_pred -------------------------C------CeEEEcCCCccchHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHH
Q 011801 135 -------------------------G------DAFLVPSPYYAAFDRDLSWRTGV---QIVPVHCDISNNFKITREALEA 180 (477)
Q Consensus 135 -------------------------G------d~vlv~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~ 180 (477)
| -+++++.-.+..+.+++... |+ .++.||+++ ++++|+++|++
T Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il-GlG~~~vv~VpvD~--~~rmd~~~L~~ 267 (608)
T TIGR03811 191 TKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII-GIGLDQVIPVPVDS--NYRMDINELEK 267 (608)
T ss_pred cccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc-CCCcccEEEeecCC--CCcCCHHHHHH
Confidence 0 05788887788888888877 88 588999874 67999999999
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCe--EEEecccccccc---cCCC--CcccH-------
Q 011801 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNI--HLVCDEIYAATV---FSSP--KFTSV------- 246 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~--~lI~De~y~~~~---~~~~--~~~s~------- 246 (477)
++++..+++..+-+|+-+-.+..+|.+=+.+++.+|++.++++|+ ++.+|.+|+++. |.++ .+.+.
T Consensus 268 ~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~ 347 (608)
T TIGR03811 268 IIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVH 347 (608)
T ss_pred HHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccc
Confidence 999877777667777888888999999896666666655578887 699999999852 2211 01111
Q ss_pred -----------------HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH
Q 011801 247 -----------------AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG 291 (477)
Q Consensus 247 -----------------~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~ 291 (477)
...+. + .....-+.-.++|.+. ....+|.++..+..+...+
T Consensus 348 ~~~~~f~~~~~~l~~~~~~~l~--g-le~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~ 405 (608)
T TIGR03811 348 AEYGVFTEKKEYISREVYNAYK--A-ISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVI 405 (608)
T ss_pred ccccccccccccccHhHHHHHh--c-CcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHH
Confidence 11111 0 1122334558999875 7788999998887655544
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-08 Score=95.17 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=116.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHH
Q 011801 76 FKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRD 151 (477)
Q Consensus 76 ~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~ 151 (477)
|.....|+.. ..=|+.+-+.+.+.+| .+.-++ ..++|.||.++++.++.|||+++..+ .-|......
T Consensus 43 f~~tTGYGY~---D~GRd~le~iyA~vfg------aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~V 113 (403)
T PF06838_consen 43 FAGTTGYGYD---DIGRDKLERIYADVFG------AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEV 113 (403)
T ss_dssp CS---TT-TT----HHHHHHHHHHHHHCT-------SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHH
T ss_pred cCCCCcCCCC---CccHHHHHHHHHHHhC------chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHH
Confidence 4444555432 2334555555544433 455555 44679999999999999999998543 346555443
Q ss_pred H----------hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHH
Q 011801 152 L----------SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTTLDRDTLKSLVSFI 220 (477)
Q Consensus 152 ~----------~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~ 220 (477)
+ +.. |++...+++.++ ..+|.+.++++++. ++|+|+|--. ..-+=..++.++++++++++
T Consensus 114 IG~~g~~~GSL~e~-Gi~Y~~v~L~~d--g~~D~~~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~v 184 (403)
T PF06838_consen 114 IGIRGNGPGSLKEF-GIKYREVPLTED--GTIDWEAIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFV 184 (403)
T ss_dssp HTSSSSSSSSTGGG-T-EEEE--B-TT--SSB-HHHHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHH
T ss_pred hCCCCCCCCChHHh-CceeEEEeecCC--CCcCHHHHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHH
Confidence 3 334 789999998754 46899999999975 8999888633 34455568999999999999
Q ss_pred Hhc--CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce--EEEEEeCCHHHHHHHHHhcc
Q 011801 221 NDK--NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR--VGIVYSFNDTVVNCGRKMSS 296 (477)
Q Consensus 221 ~~~--~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R--vG~i~~~~~~i~~~~~~~~~ 296 (477)
++. ++++++|..|.+++-..++ . .-+..++.+||-|..| .|+= -|||++..+.+..+..++..
T Consensus 185 k~~~p~~iifVDNCYGEFvE~~EP--~----------~vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~RLTa 251 (403)
T PF06838_consen 185 KEINPDVIIFVDNCYGEFVETQEP--T----------EVGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYRLTA 251 (403)
T ss_dssp HHH-TTSEEEEE-TTTTTTSSS-G--G----------GGT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHHHS-
T ss_pred HhhCCCeEEEEeCCcceeccccCc--c----------ccchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhhhcC
Confidence 864 7899999999985333222 1 1244588999999987 5532 59999988777777777766
Q ss_pred cC
Q 011801 297 FG 298 (477)
Q Consensus 297 ~~ 298 (477)
.+
T Consensus 252 PG 253 (403)
T PF06838_consen 252 PG 253 (403)
T ss_dssp TT
T ss_pred Cc
Confidence 55
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=101.50 Aligned_cols=250 Identities=14% Similarity=0.052 Sum_probs=136.8
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ .+.+ ..+.+.+.+++.. .............+.+.++++.+.+..+ -
T Consensus 12 d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~-------------~~~~~~~~~~~~~~~~~~la~~L~~~~p----~ 74 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQA-------------NKLNYVSFSGFTHPEAAELAEKLAELFP----G 74 (339)
T ss_dssp ETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHH-------------HHCSSCSTTTSEEHHHHHHHHHHHHHSS----T
T ss_pred ECCCCEEEECCCCccceecCCCccccchhHHHHh-------------hhcccccccceeccchhhhhhhhhhccc----c
Confidence 3445668888543 3444 3456666665531 1111211122334666677777765542 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------C-CCCeEEEcCCCccchHHHHhhhC------------CcEEEEEeccCCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA-------N-PGDAFLVPSPYYAAFDRDLSWRT------------GVQIVPVHCDISN 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~-------~-~Gd~vlv~~P~y~~~~~~~~~~~------------g~~~~~v~~~~~~ 169 (477)
..+++++++++++|++.+++... . .-..|+...-+|++........+ ...+..+|.+...
T Consensus 75 ~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~ 154 (339)
T PF00202_consen 75 GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPA 154 (339)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHH
T ss_pred ccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccc
Confidence 35689999999999999997654 1 23688888888886432111110 1233455543211
Q ss_pred C---cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 170 N---FKITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 170 ~---f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
. ..-..+++++.+.+.. ..++.+|++.--..-.|. ..+.+-+++|.++|+++|+++|+||++.++.-.++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~ 232 (339)
T PF00202_consen 155 ADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFAS 232 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGH
T ss_pred hhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccce
Confidence 0 0001222333333222 336766666533334565 456778999999999999999999999987555554322
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcC
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~ 313 (477)
.. . +..+| ++ +++|.++ .|+.+|.+++.++ +.+.+.. ..+-...++++..++.+.|+
T Consensus 233 -~~-~---gv~PD--iv--~~gK~l~-gG~p~sav~~~~~-i~~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 233 -EH-Y---GVDPD--IV--TFGKGLG-GGLPISAVLGSEE-IMEAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp -HH-H---TSSSS--EE--EEEGGGG-TTSSEEEEEEEHH-HHTTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred -ec-c---cccCc--cc--ccccchh-hhhhcccccccch-hhccccccccccccccchHhhhhhhhHHH
Confidence 21 1 12344 33 4569998 8899999999554 4333321 11112245555555555554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-07 Score=92.30 Aligned_cols=299 Identities=18% Similarity=0.182 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC------CCC--eEEEcCCCccchHHHHhhhCCcEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN------PGD--AFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~------~Gd--~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
-++.+.+.+..++ ..+++|++.+++|+|++.++..-.+ +-+ .|+...-+|++-.-.+-..++..-
T Consensus 101 v~l~~~l~~~~~~-------~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~ 173 (433)
T KOG1401|consen 101 VELEEVLSAVLGK-------GSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSK 173 (433)
T ss_pred HHHHHHHHhcccC-------CCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccc
Confidence 4444555554432 3688999999999999999866321 112 488777777764322211112222
Q ss_pred EEEeccC---C---CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 161 VPVHCDI---S---NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 161 ~~v~~~~---~---~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
...+.++ + ..++ |..++++.++.+ ...+.+||+.--.--.|.. .+++-+..|.+.|+++++++|.||+.
T Consensus 174 y~~~~~p~~p~v~~~~yn-d~t~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~ 249 (433)
T KOG1401|consen 174 YGLPFDPIAPDVVTAEYN-DSTALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ 249 (433)
T ss_pred cCCCCCCCCCceeecccC-CHHHHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh
Confidence 2221110 0 0111 588888888764 3357787776445566654 57778999999999999999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc------cCCCchHHHHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS------FGLVSSQTQYL 307 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~------~~~vs~~~q~~ 307 (477)
-++.-.+. .-..+++. +.+| +.++.|.+| .|+.+|..++ ++.|.+....-.. |+ .++++-.+
T Consensus 250 tG~gR~g~--~~a~e~~~---~~PD----I~t~aK~L~-gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~-gnpLacsa 317 (433)
T KOG1401|consen 250 TGLGRLGY--GWAQEYFG---VTPD----ITTVAKPLG-GGLPIGATGV-RDKVAEMISPGDHLYHGGTFS-GNPLACSA 317 (433)
T ss_pred hCccccch--HHHHHHhC---cCCc----ceeehhhcc-CCceeEEEee-hHHHHhhcCCCCccccCcccC-CChhhhhH
Confidence 87544333 22223322 2334 347889999 9999999999 4445554432222 22 34444444
Q ss_pred HH---HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC--CeEecCCceEEEEeeccchhh----ccCchHH--HHHH
Q 011801 308 LA---SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG--INCLKSNAGLFFWMDLRHLLK----EKTLEGE--IALW 376 (477)
Q Consensus 308 ~~---~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g--i~~~~~~~g~~~~~~l~~~~~----~~~~~~e--~~l~ 376 (477)
+. ..|.++++ +++..+.-+..++.+.+.+.+.. +.-. -..|+++.+.+...+. ......+ ..++
T Consensus 318 ~~~~l~~l~~~e~----~k~vs~~~k~L~~~l~e~~~~~~~~i~g~-~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~ 392 (433)
T KOG1401|consen 318 GIKVLDELKDPET----LKNVSKIGKELRKLLDEYLKKTPNSICGG-VGRGLVIGFEFEGPVYKFADAAREQGLLILTLG 392 (433)
T ss_pred HHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHhccCCCceeee-eeeEEEEEEEEeechhhhhhhhhhhhHHHHHHh
Confidence 33 34456665 33333333444455666665542 2221 2334555443332211 1111111 0112
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+++ .|+.+.|- + =+++.. ++|.++++++.+.+.+.+.
T Consensus 393 ~~~~~-~gv~i~P~---------~-~l~~~~-~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 393 KGLLE-EGVRIAPI---------Y-LLTVEH-TPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred ccccc-ceEEEecc---------c-cccccC-cHHHHHHHHHHHHHHHHHh
Confidence 22222 25555540 0 123332 5889999999998887653
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-07 Score=92.02 Aligned_cols=328 Identities=12% Similarity=0.091 Sum_probs=181.3
Q ss_pred cccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHH---HHHHHhcccCCCCccCCCcEEEe
Q 011801 41 IQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQA---VAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 41 i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~a---ia~~~~~~~g~~~~~~~~~i~~t 117 (477)
++|+-+...+|.+.+++.-++..+ ....|++.+ ++ .|-.+++.+. +.+.+++.++ ++-+.+=+++.
T Consensus 6 ~nF~aGPa~lp~~Vl~~~~~~~~~---~~~~g~si~-ei-----sHRs~~F~~i~~~~~~~Lr~Ll~--~P~~y~Vlfl~ 74 (364)
T PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVE---LPETGLSVL-GM-----SHRSSWFSSLLAQAEADLRDLLG--IPDEYGVVFLQ 74 (364)
T ss_pred ceecCCCcCCCHHHHHHHHHHHhc---ccccCcccc-cc-----ccccHHHHHHHHHHHHHHHHHhC--CCCCCeEEEEe
Confidence 567767666776666655433211 001122111 11 2222333333 3334444443 21122235557
Q ss_pred CChHHHHHHHHHHhcCCCCeEE--EcCCCccc-hHHHHhhhCCcEEEEEeccCCCCc--ccCHHHHHHHHHHHHHhCCCe
Q 011801 118 GGATGANELIMFCLANPGDAFL--VPSPYYAA-FDRDLSWRTGVQIVPVHCDISNNF--KITREALEAAYERAQEASINI 192 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vl--v~~P~y~~-~~~~~~~~~g~~~~~v~~~~~~~f--~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|+|.+++.+...|+.+||+++ +.+-.|.. +...++.. | ++..+......+| -+++++++ .+.+.
T Consensus 75 GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~-g-~v~~~~~~~~~~~~~~p~~~~~~--------~~~d~ 144 (364)
T PRK12462 75 GGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRV-A-AMRVVWDGAASGYRTLPSLAELD--------WDARA 144 (364)
T ss_pred ccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhc-C-CceEecCcCCCCCCcCCCHHHhc--------cCCCC
Confidence 7799999999999999999655 44444543 23334444 5 3333321111222 23444431 12257
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
+.|.+|.-...||+.++ ++...++.++|+|-+-+ +...+ ..+.. . .++..+.-|.+|.
T Consensus 145 ~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~---~~s~p-id~~~--------~--dvi~agsQKnlgP 202 (364)
T PRK12462 145 PFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSD---FMSRP-FDVEA--------Y--GMVYAHAQKNLGP 202 (364)
T ss_pred cEEEEccCCCCceEecC--------cccccCCCeEEEEcCch---hhCCC-CChHH--------c--cEEEeeccccCCC
Confidence 78888877779999986 22223688999999887 44433 33222 2 3566788999997
Q ss_pred CCceEEEEEeCCHHHHHHHH-------------HhcccCCCchHHHHHHHHhcCChhhHHH--HHHHHHHHHHHHHHHHH
Q 011801 273 PGFRVGIVYSFNDTVVNCGR-------------KMSSFGLVSSQTQYLLASMLSDDEFVDN--FLVETSKRLAKRHHNFT 337 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~-------------~~~~~~~vs~~~q~~~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~ 337 (477)
|| ++.++.+++.+....+ +.+.+.+.+...-+++...|+--. ++ -++...++.++..+.+.
T Consensus 203 ~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~r~~~ka~~ly 278 (364)
T PRK12462 203 AG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRDINARKAAMLY 278 (364)
T ss_pred Cc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHHHHHHHHHHHH
Confidence 77 6777776665533211 112233444455555444432110 11 25566677778888888
Q ss_pred HHHhhCC-CeEec----CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHH
Q 011801 338 KGLEQVG-INCLK----SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDD 411 (477)
Q Consensus 338 ~~L~~~g-i~~~~----~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e 411 (477)
+.+++.. +.... ..+-+-+.++++.. +-+.+|.+. +++.|+.-.-|.. .-|.+|+++=+ ++.|
T Consensus 279 ~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~-a~~~gl~~lkGhr----~vgg~Ras~yna~~~e 347 (364)
T PRK12462 279 ATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQ-STEAGFCGLSGHR----SIGGIRASLYNAVSEQ 347 (364)
T ss_pred HHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHH-HHHCCCccccCCc----ccCceEEEcCCCCCHH
Confidence 8888774 32221 11223344454421 123344444 4566998766632 24569999855 5999
Q ss_pred HHHHHHHHHHHHHhh
Q 011801 412 TLQVALNRIAAFVQQ 426 (477)
Q Consensus 412 ~l~~~l~~l~~~~~~ 426 (477)
.++.+++-+++|-++
T Consensus 348 ~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 348 AVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-07 Score=89.62 Aligned_cols=317 Identities=18% Similarity=0.282 Sum_probs=187.2
Q ss_pred cccccccCCC---CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHH--HHH-hcCCC----CeEEEcCCCc
Q 011801 76 FKDIAIFQDY---HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI--MFC-LANPG----DAFLVPSPYY 145 (477)
Q Consensus 76 ~~~~~~Y~~~---~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i--~~~-l~~~G----d~vlv~~P~y 145 (477)
|..+.-|+|. +|+.++...+.+|+.+..| +|.-.+-.-+|+++=..-+ ++. .-..| +.+|+|+-.+
T Consensus 92 f~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAH 167 (496)
T COG1003 92 FANIHPFQPEEQVQGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAH 167 (496)
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeecccc
Confidence 5556667663 5888999999999998877 3433344456666543322 222 23344 5899999988
Q ss_pred cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCe
Q 011801 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNI 225 (477)
Q Consensus 146 ~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~ 225 (477)
...-..+... |.+++.|+|+.++ .+|+++|+++..+ ++.++.+||| |-.|.. .+.+++|+++.+++|.
T Consensus 168 GTNPASAam~-G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnP-sT~GvF--E~~I~ei~~ivH~~Gg 235 (496)
T COG1003 168 GTNPASAAMA-GFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNP-STLGVF--EEDIREICEIVHEAGG 235 (496)
T ss_pred CCChhhHhhc-CceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccC-cccccc--hhhHHHHHHHHHHcCC
Confidence 7666666665 9999999998644 6999999998874 8999999999 456665 6779999999999999
Q ss_pred EEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC----CceEEEEEeCCHHHHHHHH---------
Q 011801 226 HLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP----GFRVGIVYSFNDTVVNCGR--------- 292 (477)
Q Consensus 226 ~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~----G~RvG~i~~~~~~i~~~~~--------- 292 (477)
.|..|.+-..-..+-...- ++ ..|.+|. -++|+|..| |-.+|=|... ..+..++-
T Consensus 236 ~vY~DGANlNA~vG~~rPG-------d~--G~DV~Hl--NLHKTF~iPHGGGGPG~GPvgVk-~~L~pfLP~p~~~~~~~ 303 (496)
T COG1003 236 QVYYDGANLNAIVGLARPG-------DM--GFDVVHL--NLHKTFCIPHGGGGPGAGPVGVK-AHLAPFLPGPVVYHDVG 303 (496)
T ss_pred EEEecCcchhhhhcccccc-------cc--ccceEEe--ecccccccCCCCCCCCCCceehH-hhccccCCCCcccCCCc
Confidence 9999988754323221100 00 2243443 667777433 2334444331 11111110
Q ss_pred -------------Hh-cccCCCchH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC--CceE
Q 011801 293 -------------KM-SSFGLVSSQ-TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS--NAGL 354 (477)
Q Consensus 293 -------------~~-~~~~~vs~~-~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~ 354 (477)
+. ..|++.+.+ -.++=..++.... +++..+.---+..++.+.|+.. .+.+.+. -..
T Consensus 304 ~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~G-----L~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~H- 377 (496)
T COG1003 304 EYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADG-----LKQASEVAVLNANYIARRLKGYYPVPYTGENRVAH- 377 (496)
T ss_pred cccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHhHHHHHHHhhhcCccccCCCCccee-
Confidence 01 122322221 1122223333332 2333333344567888888863 3332222 121
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
=+.++.+...+...+ ...++.++|++ +|+.- |--+|...-++.+=|=.... +.+++|++++++.++.++.+.
T Consensus 378 E~ild~r~l~~~~Gv-~~~DvAKrLlD-~GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 378 ECILDARPLKKETGV-RALDVAKRLLD-YGFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred EEEeechHhHhhcCC-cHHHHHHHHHh-cCCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 234566654443333 34478888885 58764 55555433345454444332 678999999999998876554
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-07 Score=87.95 Aligned_cols=312 Identities=15% Similarity=0.164 Sum_probs=179.1
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc--CC-----C-----CeEEEc-CCCccchHHHHhhhC
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NP-----G-----DAFLVP-SPYYAAFDRDLSWRT 156 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~--~~-----G-----d~vlv~-~P~y~~~~~~~~~~~ 156 (477)
-..+.+-..+.+..|+.. ..|.|+--+|+..-+..+..+-. -| | +-|+.. +-++..+..++.+.
T Consensus 141 lmE~~vl~km~~ivGw~~--~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l- 217 (510)
T KOG0629|consen 141 LMEEEVLAKMREIVGWEE--GGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL- 217 (510)
T ss_pred eehHHHHHHHHHHhCCCC--CCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh-
Confidence 344555555666656332 24666665566555555443321 12 2 334433 44555677777776
Q ss_pred C---cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 157 G---VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 157 g---~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
| -.++.|++++. .++++++||+.+..+++.|..+-.|-.+.-+.-.|..=+ |..|+++|++|++|+.+|.+|
T Consensus 218 g~gtd~c~~v~t~e~--Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~~lWmHvDAAw 292 (510)
T KOG0629|consen 218 GLGTDHCIKVKTDER--GKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKHKLWMHVDAAW 292 (510)
T ss_pred ccCCceeEEeccccc--CccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhcCEEEEeeccc
Confidence 7 56788888764 479999999999887666554443333333456666655 999999999999999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-------------ccC--
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-------------SFG-- 298 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-------------~~~-- 298 (477)
.+....+.........++ ..+ -+..+.+|.+| +.+.++.++...+.+......+. +|-
T Consensus 293 GGglLmS~k~R~kl~Gie----ra~--SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTg 365 (510)
T KOG0629|consen 293 GGGLLMSRKHRHKLTGIE----RAN--SVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTG 365 (510)
T ss_pred ccccccChhhHhhccCcc----ccC--ceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccc
Confidence 885444433222222222 112 34568899999 77888887776655444333321 111
Q ss_pred --------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-eE-e--cCCceEEEEeeccchhhc
Q 011801 299 --------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI-NC-L--KSNAGLFFWMDLRHLLKE 366 (477)
Q Consensus 299 --------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi-~~-~--~~~~g~~~~~~l~~~~~~ 366 (477)
.+..+-.+..-..-....| ++..+++-+..+++.+.+++.+. .. . .|+.-++++-..|+.++.
T Consensus 366 dK~iQCGRh~D~FKlWlmwkaKG~~Gf-----e~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~ 440 (510)
T KOG0629|consen 366 DKAIQCGRHVDVFKLWLMWKAKGTQGF-----EAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRG 440 (510)
T ss_pred cchhhcCccccHHHHHHHHHhcccccH-----HHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhcc
Confidence 1112222222222223333 44455666778999999998743 22 2 245345554445544432
Q ss_pred cC--chHHHHH-------HHHHHHhcCeEEeCCCCCCC--CCCCEEEEEeccC--CHHHHHHHHHHHHHHHh
Q 011801 367 KT--LEGEIAL-------WRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANM--DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 367 ~~--~~~e~~l-------~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~ 425 (477)
.. .+.+.++ -..++++ |.... .|.+ ..+.+||+.+++. +.++++-+++.|..+-+
T Consensus 441 ~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi---~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq 508 (510)
T KOG0629|consen 441 WQENPERDSRLVKVAPKIKERMMKK-GTTMI---GYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ 508 (510)
T ss_pred CcccchhhhHHHhhCcHHHHHHHhc-cceee---EecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence 22 1111111 1233333 44332 1332 3467999999875 88999999998877543
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-07 Score=87.13 Aligned_cols=292 Identities=13% Similarity=0.190 Sum_probs=166.3
Q ss_pred CcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHH-HHhhh-----CC--c---EEEEE-eccC--CCCccc-
Q 011801 112 DRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDR-DLSWR-----TG--V---QIVPV-HCDI--SNNFKI- 173 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~-~~~~~-----~g--~---~~~~v-~~~~--~~~f~i- 173 (477)
+-+++++++++|+.++++. +.+..|.|.+. ..|.+... ..+.. -| + +.+.| ||+. .+.|+.
T Consensus 103 svc~F~NSGSEANDLALRLAR~ftkhqDvItld-HAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~ 181 (452)
T KOG1403|consen 103 SVCFFVNSGSEANDLALRLARNFTKHQDVITLD-HAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDK 181 (452)
T ss_pred eEEEEecCCchhhHHHHHHHHhhcccCceEEEe-chhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccc
Confidence 4678899999999999876 45666755554 45544322 11111 01 1 11111 2211 112221
Q ss_pred ----------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 174 ----------TREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 174 ----------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
-.+.+++.+++....+.++.+.+-.+-..=.|.++++. -.+++++..+.+|.+.|.||+..++.--+..
T Consensus 182 ~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~h 261 (452)
T KOG1403|consen 182 MYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSH 261 (452)
T ss_pred cCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchh
Confidence 24567777777666666666544444445567777665 5899999999999999999999986555666
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHh---cCC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASM---LSD 314 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~---L~~ 314 (477)
+++.... +-+--+-++.|.+| .|..++.++..+ .+.+++.. +..|+ .++.+-++..+. +++
T Consensus 262 yWafq~y--------~fiPDIVtmgKpmG-NGhPVa~Vattk-eIA~Af~atgv~YFNTyG-GnPVsCAv~laVm~v~e~ 330 (452)
T KOG1403|consen 262 YWAFQTY--------NFIPDIVTMGKPMG-NGHPVAAVATTK-EIAQAFHATGVEYFNTYG-GNPVSCAVGLAVMRVCED 330 (452)
T ss_pred hhhhhhh--------ccccchheecccCC-CCCeeeEEeccH-HHHHHhccccceehhccC-CCchhHHHHHHHHHHHhh
Confidence 6665433 22222348899999 999999999844 45554432 23444 455544444444 444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe--cCCceEEEEeeccchhhccCchHHH--HHHHHHHHhcCeEEeCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL--KSNAGLFFWMDLRHLLKEKTLEGEI--ALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~--~l~~~ll~~~gI~v~pg 390 (477)
++ +++..++.-+....+...+++- -++. ....|+|+-++|-..-...+.+.+. -+..++-+.++|+++.-
T Consensus 331 E~-----Lq~ha~~vG~~L~~lL~~~k~k-h~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD 404 (452)
T KOG1403|consen 331 EN-----LQEHAQQVGEKLEVLLRRLKQK-HECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD 404 (452)
T ss_pred hh-----HHHHHHHHHHHHHHHHHHHhhh-ccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC
Confidence 43 3333444443333333333321 1222 2356899999997644444433332 33455667778888632
Q ss_pred CCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 391 SSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
. ...+-+.+-... .++++.++.+..|.+++.
T Consensus 405 G----Ph~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 405 G----PHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred C----CCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 1 112233332211 257778888888777764
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-06 Score=83.82 Aligned_cols=320 Identities=20% Similarity=0.247 Sum_probs=180.2
Q ss_pred ccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHH
Q 011801 46 AENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGAN 124 (477)
Q Consensus 46 ~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al 124 (477)
+.|+- |.+.|.+.+.+..+...+ ..-+.|.+- +.++.+-++++++ -+.++-++.+.||.
T Consensus 70 aVnqGhchpki~~aLqeq~~kLtl--------ssrafYnd~--~~~f~~~vt~lf~----------~~kvlpmnTGaEa~ 129 (427)
T KOG1402|consen 70 AVNQGHCHPKIIKALQEQADKLTL--------SSRAFYNDV--LGEFAEYVTKLFG----------YDKVLPMNTGAEAV 129 (427)
T ss_pred hcccCCCCHHHHHHHHHHHhHhhh--------hhHHHhhhh--HHHHHHHHHHhcC----------cceeeecccchhHH
Confidence 44554 667777777664332111 122345443 2466666666654 46788888889999
Q ss_pred HHHHHHhc------C--C-CCe-EEEcCCCccchHHHH--------hhh------CCcEEEEEeccCCCCcccCHHHHHH
Q 011801 125 ELIMFCLA------N--P-GDA-FLVPSPYYAAFDRDL--------SWR------TGVQIVPVHCDISNNFKITREALEA 180 (477)
Q Consensus 125 ~~i~~~l~------~--~-Gd~-vlv~~P~y~~~~~~~--------~~~------~g~~~~~v~~~~~~~f~i~~~~l~~ 180 (477)
+.++.... + | ..+ |+...-.|.+-.-.+ .|. .|+ +..+|+ . |.++|+.
T Consensus 130 Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~-~~~v~Y------~-d~eale~ 201 (427)
T KOG1402|consen 130 ETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGV-VDKVPY------G-DAEALEV 201 (427)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCc-ceeecc------C-CHHHHHH
Confidence 99886642 1 3 233 343344454321100 000 010 111221 1 6899999
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc
Q 011801 181 AYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~ 259 (477)
+++. +++.++++.--.--.|.+.|.+ -|+++.++|.+||+++|.||+..+..-.++- .... . + ...+|.
T Consensus 202 ~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~-la~d-~-e--nv~PDi 271 (427)
T KOG1402|consen 202 ALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKL-LACD-Y-E--NVRPDI 271 (427)
T ss_pred HhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcE-EEee-h-h--hcCCCe
Confidence 8874 4777766554477889877655 6999999999999999999999987555542 1110 0 0 012343
Q ss_pred EEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 260 IHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 260 viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
+ + |.|+++ .| +.+..+++.++ +....+. -+.|+ .+++...++.+.|+--. ++-+.+ +.+..-..
T Consensus 272 v-i---lgKalS-GG~~Pvsavl~~~~-im~~~~pgeHgsTyg-gNpLg~~vaiAalevi~--eekL~e---ra~~lG~~ 339 (427)
T KOG1402|consen 272 V-I---LGKALS-GGVYPVSAVLADDD-IMLNIKPGEHGSTYG-GNPLGCAVAIAALEVIV--EEKLVE---RAAKLGEI 339 (427)
T ss_pred E-E---Eecccc-CCeeeeEEEEecHH-HHhccCCCccccccC-CChHHHHHHHHHHHHHH--HHHHHH---HHHHHHHH
Confidence 3 3 358886 55 67888888444 4333322 13344 56666666666664321 222223 33334455
Q ss_pred HHHHHhhCC--C----eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-
Q 011801 336 FTKGLEQVG--I----NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM- 408 (477)
Q Consensus 336 l~~~L~~~g--i----~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~- 408 (477)
|...|.++- + .... .-|++.-+.+-.. .....++.+++-. ++++|++--|- | ..-||+.....
T Consensus 340 l~~~L~~l~~~~p~~v~~VR-GrGl~~ai~i~~~--~~~~~~aw~~cl~-lk~~g~LAkpt---H---~~IiRfaPPL~I 409 (427)
T KOG1402|consen 340 LRDQLNKLQKKFPHVVKEVR-GRGLLNAIVINPS--KTSGQDAWDVCLA-LKENGLLAKPT---H---GNIIRFAPPLVI 409 (427)
T ss_pred HHHHHHhccccccchhheee-ccceEEEEEeccc--cccchhHHHHHHc-ccccccccCCC---C---CCeEEecCCccc
Confidence 666666652 1 2222 3457776655421 1111223333333 35668876653 2 34699988654
Q ss_pred CHHHHHHHHHHHHHHHh
Q 011801 409 DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~ 425 (477)
++++++++++.|++.+.
T Consensus 410 ~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 410 SEEDLREGIEAIEKTIA 426 (427)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998763
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-06 Score=84.13 Aligned_cols=283 Identities=19% Similarity=0.216 Sum_probs=160.1
Q ss_pred cCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc-----chHHHHhhhCC----cEEEEEeccCCCCcccCH
Q 011801 109 FDPD----RIVMGGGATGANELIMFCLANPGDAFLVPSPYYA-----AFDRDLSWRTG----VQIVPVHCDISNNFKITR 175 (477)
Q Consensus 109 ~~~~----~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~-----~~~~~~~~~~g----~~~~~v~~~~~~~f~i~~ 175 (477)
+||+ +|---+| +.|+..+..+++.|+|+|.--+--.. +|...-+.... .+-.|+.++++.+ -||.
T Consensus 101 ldp~kWGVNVQp~SG-SPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDY 178 (477)
T KOG2467|consen 101 LDPEKWGVNVQPYSG-SPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDY 178 (477)
T ss_pred CCHHHCceeeccCCC-CchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceeh
Confidence 5565 3444444 56899999999999999885442222 22221111101 1223555665443 5799
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH-HHHHHHHHHHhcCeEEEecccccc-cccCCCCcccHHHhhhhc
Q 011801 176 EALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD-TLKSLVSFINDKNIHLVCDEIYAA-TVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~-~l~~l~~~~~~~~~~lI~De~y~~-~~~~~~~~~s~~~~~~~~ 253 (477)
+.||+..... ++|+|+.. +..+++. +-.++-++|.+.|.++++|-++.- ++-.+ -..+..+.
T Consensus 179 D~Le~~A~~f-----rPk~iiaG------~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~-vipsPFey---- 242 (477)
T KOG2467|consen 179 DKLEKTATLF-----RPKLIIAG------TSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAG-VIPSPFEY---- 242 (477)
T ss_pred HHHHHHHHhc-----CCcEEEec------cccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcc-cCCCcccc----
Confidence 9999887765 88865532 2333333 245555556688999999999843 22222 11222222
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCC-----------HHHHHHHHHh--ccc----CCCchHHHHHHHHhcC---
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN-----------DTVVNCGRKM--SSF----GLVSSQTQYLLASMLS--- 313 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~-----------~~i~~~~~~~--~~~----~~vs~~~q~~~~~~L~--- 313 (477)
..|+..+.+|++ -|-|.|.|.... +...+...+. +-| +....-+..+++.+|.
T Consensus 243 -----~DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~ 315 (477)
T KOG2467|consen 243 -----CDIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM 315 (477)
T ss_pred -----cceeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC
Confidence 236778889987 799999987642 1111111111 111 1111222333333333
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGS 391 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~ 391 (477)
.++| .+.+++..++.+.|.+.|.+.|.+..... .+-.+.++|+. +++....+.-.+++...+++ +..||.
T Consensus 316 tpef-----k~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NK---NtvpGD 387 (477)
T KOG2467|consen 316 TPEF-----KEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNK---NTVPGD 387 (477)
T ss_pred CHHH-----HHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcC---CcCCCC
Confidence 3454 55566778888999999999998876533 23456778875 33333223333333333333 223554
Q ss_pred CCCCCCCCEEEEEeccC-----CHHHHHHHHHHHHHHHh
Q 011801 392 SFQCTEPGWFRVCFANM-----DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~~-----~~e~l~~~l~~l~~~~~ 425 (477)
.-. ..|+.+|++...+ -++++++..+-|.+.++
T Consensus 388 ~Sa-l~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 388 KSA-LSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred ccc-cCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 422 3478899987555 36788888877777663
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-06 Score=93.39 Aligned_cols=271 Identities=14% Similarity=0.170 Sum_probs=161.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-C--CCCeEEEcCCCccchHHHHhh---hCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-N--PGDAFLVPSPYYAAFDRDLSW---RTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~--~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~ 161 (477)
+-++...+++..+ .+..|.-+-.++|.+-+.++.+.. . ++++|+|++-.||.+...++. ..|++++
T Consensus 111 l~e~Qt~i~eLtG--------m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~ 182 (939)
T TIGR00461 111 LLNFQTVVSDLTG--------LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVI 182 (939)
T ss_pred HHHHHHHHHHHHC--------CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEE
Confidence 3355555666554 567788888889988887776642 2 348999999999987755441 2388887
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++ .++|++.+ ++.++++.+| |-+|.+.+ +++|++.++++|.+++++---..+..-.
T Consensus 183 ~~~----------~~~l~~~~--------~~~~v~~q~P-n~~G~ied---~~~i~~~~h~~gal~~~~ad~~al~ll~- 239 (939)
T TIGR00461 183 VVD----------CSDIKKAV--------DVFGCLLQYP-ATDGSILD---YKQLIDALHSHKSLVSVAADLMALTLLT- 239 (939)
T ss_pred EEc----------HHHHhhcC--------CEEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechHHhCCcC-
Confidence 764 23444332 4678888888 67898875 8899999999999999854333221111
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCC----CCceEEEEEeCCHHHHHHHHH------------------------
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL----PGFRVGIVYSFNDTVVNCGRK------------------------ 293 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~----~G~RvG~i~~~~~~i~~~~~~------------------------ 293 (477)
+.. +.+..|+++ .+|.||+ .|--.|++.+.++.+...--+
T Consensus 240 ---~Pg--------e~GaDi~vg-~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqh 307 (939)
T TIGR00461 240 ---PPG--------HYGADIVLG-SSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQH 307 (939)
T ss_pred ---CHH--------HcCCcEEee-CCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeeccccccc
Confidence 111 223344444 3444443 355577877754322111000
Q ss_pred ---hcccCCCchHHHHHHH--Hh--cC-ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEE--Eeeccch
Q 011801 294 ---MSSFGLVSSQTQYLLA--SM--LS-DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF--WMDLRHL 363 (477)
Q Consensus 294 ---~~~~~~vs~~~q~~~~--~~--L~-~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~--~~~l~~~ 363 (477)
......+. ..|.+++ +. +. -+ .+-+++..++...+..++.+.|.+.|+++..+ .+|= .++++.
T Consensus 308 IrRekAtSNIC-t~qaL~a~~a~~Y~~~~G---~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~- 380 (939)
T TIGR00461 308 IRRDKATSNIC-TAQVLLANVASSYCVYHG---PKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN- 380 (939)
T ss_pred ccccccCcchh-HHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-
Confidence 00010011 1222222 11 11 11 22356777778888889999999999887654 2342 233321
Q ss_pred hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHH
Q 011801 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIA 421 (477)
Q Consensus 364 ~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~ 421 (477)
. ...++.+.+++ .||+++.. .++.+++|+... ++++++.+++.+.
T Consensus 381 ---~---~~~~i~~~~~~-~gi~l~~~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 381 ---G---ISSELLKAAEE-FNINLRAV------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred ---C---CHHHHHHHHHH-CCCeeeec------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 0 11245666654 59998752 245799999775 8999999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-06 Score=79.29 Aligned_cols=270 Identities=14% Similarity=0.117 Sum_probs=164.1
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCC-ccc----hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPY-YAA----FDRDLSWRTGVQIVPVHCDISNNFKITREALEAA 181 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~-y~~----~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~ 181 (477)
..+++++++.+++--+..++.+.. .+|+.|++++-. |+. ....+... |. ..+. ...+++++++++
T Consensus 91 A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~-~~-----~~~~--~~~~~P~~~~~~ 162 (407)
T COG3844 91 ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLL-GI-----GYDL--EGVIAPRALEEA 162 (407)
T ss_pred CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhh-cc-----cccc--eeeeChHHHHHh
Confidence 568899999999888887776654 358899888754 332 11222222 21 1111 123467788888
Q ss_pred HHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEE
Q 011801 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 182 ~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
+.+ ++.+|+++.-+.-||..++ +.+|-+++++++++++-|-+++...+.- .+ . ..+..+
T Consensus 163 ~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp~----~L----h----~~gaDf 221 (407)
T COG3844 163 ITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVPV----DL----H----AAGADF 221 (407)
T ss_pred hcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcce----ee----c----ccCCCe
Confidence 865 7888888888889999999 8888889999999999999998532221 11 0 335557
Q ss_pred EEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhcccC------------------------CCchHHHHHHHHhcCChh
Q 011801 262 IIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMSSFG------------------------LVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 262 iv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~~~~------------------------~vs~~~q~~~~~~L~~~~ 316 (477)
-+++-.|.+.- || -+++++..++........++.++ +.+..+..++...|.-..
T Consensus 222 aigcsyKYLNgGPG-apa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa 300 (407)
T COG3844 222 AIGCSYKYLNGGPG-APAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFA 300 (407)
T ss_pred eeeeeceeccCCCC-CceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhh
Confidence 78888998752 33 34555554433222222222211 112223333333333211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCC----ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
+--+.+.+++--...+++++.++.. ++++..|. -|--+.+..|+. .+..+.| .++||..
T Consensus 301 --~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~---------~~V~qaL-i~rGVig- 367 (407)
T COG3844 301 --DVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHG---------YQVMQAL-IDRGVIG- 367 (407)
T ss_pred --hcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcH---------HHHHHHH-HHcCccc-
Confidence 1125556665555667777766653 44444432 233444544532 1344444 4569864
Q ss_pred CCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 389 PGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 389 pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
.| ..|+-+|++|+-+ +-+++=.+++.|.+++++
T Consensus 368 ---D~--R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t 402 (407)
T COG3844 368 ---DF--REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDT 402 (407)
T ss_pred ---cc--cCCCeeeecCccceechhHHHHHHHHHHHHHHh
Confidence 23 4588999999653 678999999999999986
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-06 Score=81.10 Aligned_cols=194 Identities=20% Similarity=0.235 Sum_probs=128.7
Q ss_pred cccccccC-CCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-ccchHHH--
Q 011801 76 FKDIAIFQ-DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY-YAAFDRD-- 151 (477)
Q Consensus 76 ~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-y~~~~~~-- 151 (477)
|.....|+ |.-|-.-|.+..|+-++.. ...-+.-+.+| |.|+..+++.+++|||..+...-. |....+.
T Consensus 54 f~~stGYGydD~GRdtLe~vyA~vf~aE------~a~VRpq~isG-THAI~~aLfg~LRpgDell~i~G~PYDTLeevIG 126 (416)
T COG4100 54 FTGSTGYGYDDLGRDTLERVYAQVFGAE------AALVRPQIISG-THAIACALFGILRPGDELLYITGSPYDTLEEVIG 126 (416)
T ss_pred cCCCCCCCccccchhHHHHHHHHHhccc------cceeeeeeecc-hhHHHHHHHhccCCCCeEEEecCCcchhHHHHhc
Confidence 44445555 2347677777777777621 11224445555 779999999999999998855432 4434333
Q ss_pred --------HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHHHh
Q 011801 152 --------LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 152 --------~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
++.. |+....+++..+ .++|.+++++++.. ++|+|.|--. ..----.++.+++++++++.++
T Consensus 127 ~rg~~~gSL~df-gi~Y~~v~Lt~~--gkiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~ 197 (416)
T COG4100 127 LRGEGQGSLKDF-GIKYKAVPLTAD--GKIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKE 197 (416)
T ss_pred cCCCCcccHHHh-CcceeecccccC--CcccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHh
Confidence 2333 677777887754 37999999999875 8998876532 2222224788899999999987
Q ss_pred c--CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce--EEEEEeCCHHHHHHHHHhcccC
Q 011801 223 K--NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR--VGIVYSFNDTVVNCGRKMSSFG 298 (477)
Q Consensus 223 ~--~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R--vG~i~~~~~~i~~~~~~~~~~~ 298 (477)
- |+++.+|..|.+++-..++. .-+..++.+|+-|.-| .|+- -||+.+.++.+..+.-++...+
T Consensus 198 inpn~ivFVDNCYGEFvE~~EPt------------~vGaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~yRlTaPG 264 (416)
T COG4100 198 INPNVIVFVDNCYGEFVEEKEPT------------HVGADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAAYRLTAPG 264 (416)
T ss_pred cCCCEEEEEeccchhhhhccCcc------------ccchhhhccceeeCCC-CceeeccceeechHHHHHhhceeeecCC
Confidence 4 78999999999864433321 1234467899999876 5532 3789987776666655555543
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.3e-06 Score=81.54 Aligned_cols=315 Identities=15% Similarity=0.187 Sum_probs=173.4
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccC-----CCcEEEeCChHHHHHHHHHHh-------cCCC-----------C-eEEE
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFD-----PDRIVMGGGATGANELIMFCL-------ANPG-----------D-AFLV 140 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~-----~~~i~~t~G~t~al~~i~~~l-------~~~G-----------d-~vlv 140 (477)
.+...||...+.+|+++..+.+..+- +---++-..++++...++.+- .+.+ + .+..
T Consensus 108 sPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~ 187 (511)
T KOG0628|consen 108 SPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYC 187 (511)
T ss_pred CcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEe
Confidence 34578999999999998776443221 122333344445554443331 1222 1 2334
Q ss_pred cCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHH
Q 011801 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFI 220 (477)
Q Consensus 141 ~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~ 220 (477)
.+-++......+... |+++..++.+. ||.++.+.|++++++..++|-=+ .+++.+- -|-.+..-+++.+|..+|
T Consensus 188 SDqahssveka~~i~-~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~--GTT~~ca~D~l~elg~Vc 261 (511)
T KOG0628|consen 188 SDQAHSSVEKACLIA-GVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATL--GTTSSCAFDELEELGPVC 261 (511)
T ss_pred cCcccchHHHhHhhc-ceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEee--cCccccccccHHHhcchh
Confidence 455666666655544 89988888775 89999999999999887776433 3333221 122334567899999999
Q ss_pred HhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC-----------HHHHH
Q 011801 221 NDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN-----------DTVVN 289 (477)
Q Consensus 221 ~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~-----------~~i~~ 289 (477)
+++++|+.+|.+|++..|.=+.+......++. .+. +-.-.||.+ +.-+-+.-+...+ +...+
T Consensus 262 ~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~----aDS--fn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~vdp~yL~ 334 (511)
T KOG0628|consen 262 REEGLWLHVDAAYAGSAFICPEFRYLMRGIEY----ADS--FNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFNVDPLYLK 334 (511)
T ss_pred hhcCEEEEeehhhccccccCHHHHHHhhcchh----hcc--ccCChhhee-EEeeeeecceeecCceeeeeeecChHhhc
Confidence 99999999999999887766665554444331 111 112345544 2333333322222 11111
Q ss_pred HHH--Hhccc--CCCc------hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCceEEEE
Q 011801 290 CGR--KMSSF--GLVS------SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNAGLFFW 357 (477)
Q Consensus 290 ~~~--~~~~~--~~vs------~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~g~~~~ 357 (477)
... ....| |.++ ++-.+...+.+.-..+ ++++++ ..+..+.+.+.+.+. .+++.. ..-|+.+
T Consensus 335 h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~l-q~~iR~----h~~La~~fe~lv~~d~~FE~~~~~~lgLvc- 408 (511)
T KOG0628|consen 335 HAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENL-QNYIRE----HVRLAKEFETLVRADPRFEIVNKRILGLVC- 408 (511)
T ss_pred chhhccCCCccccccccccchhhHHHHHHHHHHhHHHH-HHHHHH----HHHHHHHHHHHhhcCCcceeecccccceeE-
Confidence 100 01111 1111 1222222233322222 222222 122222333333222 344433 3344433
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
+++.+. . +...+|..++.....|.+.|.+. .+.-.+|++++.. ++++++++.+.|.+....
T Consensus 409 FRlk~~----N-~~ne~Ll~~in~~g~i~l~~~~l---~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 409 FRLKGD----N-EINEALLNRLNSSGRIHLVPASL---HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred EeecCC----c-HHHHHHHHHHHhcCcEEEEEeee---cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 455532 1 22236788888888898888753 2344799999764 789999999999988765
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-06 Score=82.68 Aligned_cols=297 Identities=16% Similarity=0.175 Sum_probs=152.9
Q ss_pred CcEEEeCChHHHHH-HHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANE-LIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~-~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f~i~~~~l~~~~~~~~~ 187 (477)
...++.+.+|+.-. +.+.++. ..++.|+.+.-..-....++... |.+++.|+... .+....|.+++++.+++.
T Consensus 75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A-Gl~~~vV~~~~~~d~l~td~~~ie~~i~~~-- 151 (389)
T PF05889_consen 75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA-GLEPVVVENVLEGDELITDLEAIEAKIEEL-- 151 (389)
T ss_dssp CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT-T-EEEEE-EEEETTEEEEHHHHHHHHHHHH--
T ss_pred cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc-CCeEEEeeccCCCCeeeccHHHHHHHHHHh--
Confidence 45777777665433 3333443 45788888876543344455555 99988888532 234455788888888654
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc-EEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL-IHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~-viiv~Sl 266 (477)
+....+.+++.++--.|..- |++++|.++|+++|+..|+..+|+ ..... +...++.. +..++ ..++.|+
T Consensus 152 -G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYg---vQ~~~---~~~~i~~a-~~~GRvda~vqS~ 221 (389)
T PF05889_consen 152 -GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYG---VQSSK---CMHLIQQA-WRVGRVDAFVQST 221 (389)
T ss_dssp -CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTT---TT-HH---HHHHHHHH-HHHSTCSEEEEEH
T ss_pred -CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchh---hhHHH---HHHHHHHH-HhcCCcceeeeec
Confidence 44555667777765555553 369999999999999999999997 22211 11111110 01122 3678899
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDD--EFVDNFLVETSKRLAKRHHNFTKGLEQVG 344 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~--~~~~~~~~~~~~~l~~r~~~l~~~L~~~g 344 (477)
-|.| +-+..-+.+.++++..+....+..+.-...++....+..+|.-+ .+ ...+.++.+.+....+.+.+.-++.+
T Consensus 222 dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~~aee~~ 299 (389)
T PF05889_consen 222 DKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKKWAEEVG 299 (389)
T ss_dssp HHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 56666678888887766665554333223334445555555432 22 22233322222222222322223334
Q ss_pred CeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE----EeCCCCC---CCCC--CCEEEE-EeccCCHHHH
Q 011801 345 INCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN----VSPGSSF---QCTE--PGWFRV-CFANMDDDTL 413 (477)
Q Consensus 345 i~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~----v~pg~~f---~~~~--~~~~Rl-~~~~~~~e~l 413 (477)
-.+.. |.....+-+.++.+..... ....+.-..|..+||. |.|+..+ +.+. -.++-+ |--.+++|++
T Consensus 300 e~ll~~p~N~is~a~tl~~l~~~~~--k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eev 377 (389)
T PF05889_consen 300 ERLLETPRNHISMAFTLDTLYEISQ--KDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEV 377 (389)
T ss_dssp EEBSSSTT-SSEEEEE-TTCCTCCS--SHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHH
T ss_pred hhhcCCCCCCeeEEEECccchhhcc--chhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHH
Confidence 23322 2222344456664322211 1122333344455653 3333222 1111 257777 4434699999
Q ss_pred HHHHHHHHHHHh
Q 011801 414 QVALNRIAAFVQ 425 (477)
Q Consensus 414 ~~~l~~l~~~~~ 425 (477)
+.++++|+++++
T Consensus 378 d~~v~rL~k~i~ 389 (389)
T PF05889_consen 378 DYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-05 Score=80.72 Aligned_cols=304 Identities=15% Similarity=0.193 Sum_probs=185.2
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---cC--CC---CeEEEcCCCccchHHHHhhhCC
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---AN--PG---DAFLVPSPYYAAFDRDLSWRTG 157 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---~~--~G---d~vlv~~P~y~~~~~~~~~~~g 157 (477)
++..++..++.+++...++.+ +...=..|.|+|+++....... .. .| ..++++.-....+...++.. +
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~---~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf-~ 191 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAP---SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYF-E 191 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCC---ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhE-E
Confidence 466788888888877766533 2244566889999955443332 11 12 35677777777888877766 9
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCeEEEeccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND-KNIHLVCDEIYAAT 236 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-~~~~lI~De~y~~~ 236 (477)
+++..|++++ +.|.+|+.++.+.+.+ ++.+|+..-|+-|+|..=+ +++|.++.-+ +++.+.+|.+-+++
T Consensus 192 v~l~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgF 261 (491)
T KOG1383|consen 192 VELREVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEIED---VEKLADLLLEIWDIPIHVDACLGGF 261 (491)
T ss_pred EEEEeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccchhh---HHHHHHHHHHHhCCceeecccCccc
Confidence 9999999986 6899999999999876 8899999999999999866 7777777777 99999999999875
Q ss_pred ccC--CCCcccHHHhhhhccCC-CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH-HHH--------hcccCC----C
Q 011801 237 VFS--SPKFTSVAEVIQEMDCN-RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC-GRK--------MSSFGL----V 300 (477)
Q Consensus 237 ~~~--~~~~~s~~~~~~~~~~~-~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~-~~~--------~~~~~~----v 300 (477)
+-. ...+. +.|.. +...-+-.+-+| +|+.--..||++-.++.+... +.. ..+++. .
T Consensus 262 i~p~~~~~~~-------~fdFr~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~ 333 (491)
T KOG1383|consen 262 INPAGYLNEE-------EFDFRVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRP 333 (491)
T ss_pred cccccccCcc-------ccccCCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCc
Confidence 431 11110 11111 222223334455 566555589988765543221 100 011111 1
Q ss_pred ch--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHH
Q 011801 301 SS--QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 301 s~--~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
++ ..|++ ++++-++ +.| .+..+.+.+....+.+++++. ++.+.....--|+..+-.. -++-++ .
T Consensus 334 g~~va~~wa--~~~~lG~--eGY-~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~-------~~i~el-s 400 (491)
T KOG1383|consen 334 GSQVAAQWA--ALMSLGE--EGY-RENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND-------VNIFEL-S 400 (491)
T ss_pred ccHHHHHHH--HHHHhhH--HHH-HHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc-------cchhhh-h
Confidence 22 34444 3444332 333 344556777888899999987 6665543221122221111 111123 4
Q ss_pred HHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhhhc
Q 011801 378 TIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.++.+.|..+ |+-.| |..+-+|+... .++-.++++.-|++++.+...
T Consensus 401 d~l~~~GW~l-nalq~----P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 401 DLLRKKGWIL-NALQF----PAAIHICVTRVHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred HHHHhcCcCc-cccCC----CCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence 4566778877 33322 33456666543 455568888889998877654
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-05 Score=78.76 Aligned_cols=178 Identities=18% Similarity=0.148 Sum_probs=120.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEE-----EcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFL-----VPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vl-----v~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
..+.+++++..+.|+.++...+..++..|+ |+ ++.+.....++.. |++++.+.... .....+++.++.+
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~a-G~~l~EvG~tn----~t~~~d~~~AIne 155 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE-GGAFRVPDIIRLA-GAKLVEVGTTN----RTHLKDYELAINE 155 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-CCCCChhHHHHHc-CCEEEEecccC----cCCHHHHHHHhcc
Confidence 368899999999999999999987655544 33 4666677788877 99999987542 2468889998865
Q ss_pred HHHhCCCeeEEEEeCCCCC-cccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 185 AQEASINIKGLIITNPSNP-LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NP-tG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
++++++-..-+|- -=..++ +++++++|+++|+.+++|.+-...+-.. ......+ ..+..+++
T Consensus 156 ------~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~e---~~l~~~l-----a~GaDLV~ 218 (395)
T COG1921 156 ------NTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDKE---PDLREAL-----ALGADLVS 218 (395)
T ss_pred ------CCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCccccccc---cchhHHH-----hcCCCEEE
Confidence 7777766655553 222345 6778888899999999999886543222 2333333 23555788
Q ss_pred ecCCcccCCCCceEEEEEeCCHHHHHHHHHh-ccc-CCCchHHHHHHHHhcC
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSF-GLVSSQTQYLLASMLS 313 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~-~~vs~~~q~~~~~~L~ 313 (477)
+|-.|.|| |.+.|.|++.++.| ..+++. ..+ .-+...+-.++.+.|+
T Consensus 219 ~SgdKllg--GPqaGii~GkKelI-~~lq~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 219 FSGDKLLG--GPQAGIIVGKKELI-EKLQSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred EecchhcC--CCccceEechHHHH-HHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence 89999995 88899999966555 444332 111 1244455454444443
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00038 Score=69.18 Aligned_cols=277 Identities=19% Similarity=0.268 Sum_probs=159.5
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCccchHHHHhhhC---CcEEEEE
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPGDAFLVPSPYYAAFDRDLSWRT---GVQIVPV 163 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~~Gd~vlv~~P~y~~~~~~~~~~~---g~~~~~v 163 (477)
++..-+++..+ .+-.|--+--++|.+-+.++.+.. ++..+|+|+.-+||.+...++.++ |.+++.+
T Consensus 124 efQtlv~dLTG--------m~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~ 195 (450)
T COG0403 124 EFQTLVADLTG--------LDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVV 195 (450)
T ss_pred HHHHHHHHHhC--------CCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEe
Confidence 44455555544 444566666778877777766642 235899999999999887776543 5667666
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEec-ccccccccCCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCD-EIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~D-e~y~~~~~~~~~ 242 (477)
+.+ |.++|+++ .. ..+.++++.+|+ -.|.. .+++++|.+.+++++.++++= |.-+-.....|.
T Consensus 196 ~~~-------d~~~l~~~-~~-----~~~~gv~vQyP~-~~G~~--~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPG 259 (450)
T COG0403 196 DAD-------DLDDLESA-DD-----GDVFGVLVQYPN-TFGIV--EEDLRALIEAAHSAGALVIVAADPLALGLLKPPG 259 (450)
T ss_pred ccc-------hhhhhhhc-cc-----cCeEEEEEecCC-CCCcc--chhHHHHHHHHhhcCCEEEEEechhHhhccCCcc
Confidence 653 56777766 32 278899999885 56633 345999999999998877742 111111121111
Q ss_pred cccHHHhhhhccCCCCcEEEEecCC---cccCCCCceEEEEEeCCHHHHHH---------------------------HH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLS---KDMGLPGFRVGIVYSFNDTVVNC---------------------------GR 292 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlS---K~~g~~G~RvG~i~~~~~~i~~~---------------------------~~ 292 (477)
..+..|++++.. =-+|+.|-.+||..+.++..++. ++
T Consensus 260 -------------e~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIR 326 (450)
T COG0403 260 -------------EFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIR 326 (450)
T ss_pred -------------ccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHh
Confidence 345567887654 33666788899988755432110 11
Q ss_pred Hh--cccCCCchHHHHHHH-HhcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecCCceEEE--Eeeccch
Q 011801 293 KM--SSFGLVSSQTQYLLA-SMLS--DDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKSNAGLFF--WMDLRHL 363 (477)
Q Consensus 293 ~~--~~~~~vs~~~q~~~~-~~L~--~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~~~g~~~--~~~l~~~ 363 (477)
+- .+-. ++.+.-.+++ ++.. .+ .+-+++...+..+...++.++|++. |+++... .+|= .++++.
T Consensus 327 ReKATSNI-CTnQaLlA~~As~y~~~hG---p~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~- 399 (450)
T COG0403 327 REKATSNI-CTNQALLALAASMYAVYHG---PQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE- 399 (450)
T ss_pred hhccchhh-hHHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch-
Confidence 00 1111 1222211111 1111 11 2346777888888889999999965 4665543 3553 334332
Q ss_pred hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 364 ~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+....+.++.+ ..|+.++.- .++.+=+|+... ++++++.+++.+...
T Consensus 400 ------~~~~~l~~~~~-~~G~~L~~~------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 400 ------EVAEALLAAAI-AGGINLRRV------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ------hHHHHHHHHHH-hcCCceeee------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 11112333333 347776532 133455666544 678888888877654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-05 Score=77.12 Aligned_cols=262 Identities=17% Similarity=0.220 Sum_probs=131.1
Q ss_pred cCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchHHHHhhh---CCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSWR---TGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~~---~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
.+..+.-+-.|++.+-+.++.+. .+..++|+++.-.+|.+...++.+ .|++++.++++..+ ..|
T Consensus 125 mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~--~~d-------- 194 (429)
T PF02347_consen 125 MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG--TTD-------- 194 (429)
T ss_dssp SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC--SB---------
T ss_pred CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC--Ccc--------
Confidence 34334456667777766655443 233469999999999887644432 38999999987533 222
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vii 262 (477)
+.++.+|+++|| |-.|.+-+ +++|.++++++|.++++ .+.-- .... ..+.. ..+..|+
T Consensus 195 ------~~~~a~v~vq~P-n~~G~~ed---~~~i~~~~h~~gal~~~-~ad~~-aL~~--l~~Pg--------e~GADI~ 252 (429)
T PF02347_consen 195 ------DDDTAAVMVQNP-NTFGVFED---IKEIADIAHAAGALVIV-GADPN-ALGG--LKSPG--------EYGADIV 252 (429)
T ss_dssp ------STTEEEEEEESS--TTSB--T---HHHHHHHHHHTT-EEEE-CGGCC-GCCT--C--GG--------GGT-SEE
T ss_pred ------ccCeEEEEeecC-CCCceEee---HHHHHHHHHHcCCEEEE-ecCHH-HHhC--cCChh--------hcCccEE
Confidence 238999999999 56888866 89999999999998886 33211 1111 11111 2234455
Q ss_pred EecCCcccCC----CCceEEEEEeCCHHHHHHH---------------------------HHh--cccCCCchHHHHHHH
Q 011801 263 IYSLSKDMGL----PGFRVGIVYSFNDTVVNCG---------------------------RKM--SSFGLVSSQTQYLLA 309 (477)
Q Consensus 263 v~SlSK~~g~----~G~RvG~i~~~~~~i~~~~---------------------------~~~--~~~~~vs~~~q~~~~ 309 (477)
+++ +|.||. .|--+|++.+.++.+...- ++- .+.. ++.++-.++.
T Consensus 253 vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNI-ctnqaL~A~~ 330 (429)
T PF02347_consen 253 VGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNI-CTNQALLALA 330 (429)
T ss_dssp EEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT----SS-HHHHHH
T ss_pred eeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhh-hhhHHHHHHH
Confidence 665 677664 4566888888654322111 100 1111 1222222211
Q ss_pred --HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 310 --SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 310 --~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
..+.--. .+-+++..++...+..++.+.|.+. ++.+..+.---|+....+. ....++.++.+.. |+.
T Consensus 331 a~~Yl~~~G--~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~-------~~~~~l~~~~~~~-gl~ 400 (429)
T PF02347_consen 331 AAIYLAYLG--PEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD-------KEVEELLKRGIEG-GLN 400 (429)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS--------HHHHHHHHTT-----EE
T ss_pred HHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc-------HHHHHHHHHHHhc-CCC
Confidence 2222111 3346788888899999999999986 3333222211133333221 1111233333322 433
Q ss_pred EeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHH
Q 011801 387 VSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRI 420 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l 420 (477)
. ...+.+++-+|+.-. +++++|.+++.+
T Consensus 401 ~------~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 401 L------RYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp E------GGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred c------cccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 3 222355788898765 889999988764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-06 Score=84.34 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC---ccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY---YAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~---y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
.+..+++++...|+.+++..|+ +|..|++..-- +.+ ....++.. |++++.|-... +-.++++++++.+
T Consensus 62 AeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip~vm~~s-Ga~lvEVGttN----~t~~~Dye~AI~e 135 (367)
T PF03841_consen 62 AEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIPDVMRQS-GARLVEVGTTN----RTHLSDYEKAITE 135 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccc-ccccccccccc----ccccccccccccc
Confidence 5778888888899999998886 45566665432 222 22445555 99999888642 3467888999876
Q ss_pred HHHhCCCeeEEEEeCCCCCc--ccCCCHHHHHHHHHHHHhcCeEEEecccccccc----cCCCCcccHHHhhhhccCCCC
Q 011801 185 AQEASINIKGLIITNPSNPL--GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV----FSSPKFTSVAEVIQEMDCNRD 258 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPt--G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~----~~~~~~~s~~~~~~~~~~~~~ 258 (477)
++.+++..+++|-. |.+- .-.++++++++++||+.+|+|-.-..+. |.-+.-.++.+.+ ..+
T Consensus 136 ------~Ta~ll~Vh~Sn~~i~GFt~-~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~-----~~G 203 (367)
T PF03841_consen 136 ------NTAALLKVHTSNFRIQGFTG-EVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYL-----AAG 203 (367)
T ss_dssp --------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CC-----CCT
T ss_pred ------cccccccccccccccccccc-cccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHh-----hcC
Confidence 88899999998863 3221 1248889999999999999998763221 1112223444443 335
Q ss_pred cEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH
Q 011801 259 LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK 293 (477)
Q Consensus 259 ~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~ 293 (477)
..++++|-.|.+| |-..|+|++..+.+ +.+++
T Consensus 204 aDlV~fSGdKlLG--GPQaGiI~Gkk~lI-~~lk~ 235 (367)
T PF03841_consen 204 ADLVTFSGDKLLG--GPQAGIIVGKKELI-EKLKK 235 (367)
T ss_dssp -SEEEEETTSSSS--S-S-EEEEEEHHHH-HHHHH
T ss_pred CCEEEEECCCcCC--CCCeEEEEeCHHHH-HHHhh
Confidence 5678889999996 66689999965544 44443
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00073 Score=65.39 Aligned_cols=217 Identities=14% Similarity=0.166 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 175 REALEAAYERAQEASINIKGLIITNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
++++|+.|.+..+.+..+.++++.--..--| ...+++-.+.|-+++++|++.+|+||+.-+..-.+ .++.-.. .
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHeh----w 329 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEH----W 329 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehh----c
Confidence 6778888888877666777766653355555 46788999999999999999999999997543222 1221110 0
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-HHHHhcccCCCchHHH---HHHHHhcCChhhHHHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN-CGRKMSSFGLVSSQTQ---YLLASMLSDDEFVDNFLVETSKRL 329 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~-~~~~~~~~~~vs~~~q---~~~~~~L~~~~~~~~~~~~~~~~l 329 (477)
+......++ +|||-|- .| ||... ++.... ..+.+..+. ..+.-. ..+...+++.++++ ..
T Consensus 330 ~l~~PpD~v--TFSKK~q-~g---Gffh~-~~frpn~pYrifNTWm-GdP~k~lll~~vv~~I~~~~Ll~--------n~ 393 (484)
T KOG1405|consen 330 NLDSPPDVV--TFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNTWM-GDPSKNLLLEEVVQEIKREDLLN--------NV 393 (484)
T ss_pred CCCCCccce--ehhhhhh-cC---ccccC-cccCCCchHHHhhhhc-CChHHHHHHHHHHHHHhHHHHHH--------HH
Confidence 112222233 8999985 55 55443 222211 223333332 222111 12223344444311 11
Q ss_pred HHHHHHHHHHHhhC-----C-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 330 AKRHHNFTKGLEQV-----G-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 330 ~~r~~~l~~~L~~~-----g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
+..-+.|.++|.++ | +.-... -|-|+-+++|..-.. ..++. +++-.||.+-- .+...+|+
T Consensus 394 ~~vG~~l~~gL~~Lq~~~p~~~~~~RG-rGTF~a~d~ps~~~R------dk~i~-~~~~nGv~~GG------Cg~~siRf 459 (484)
T KOG1405|consen 394 AHVGKALLKGLLELQAKYPGKINNLRG-RGTFIAWDCPSGSIR------DKLIL-IARLNGVNLGG------CGDKSIRF 459 (484)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhcccc-cceEEEEeCCChHHH------HHHHH-HHHHcCceecc------cccceeee
Confidence 22223444444432 1 222333 345777888853211 12333 34455887632 13455777
Q ss_pred EeccC-CHHHHHHHHHHHHHHHhh
Q 011801 404 CFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 404 ~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
-.+.. .+...+.+++++.+.++.
T Consensus 460 RPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 460 RPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred ccceeehhhhHHHHHHHHHHHhcc
Confidence 66554 788999999999988754
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.005 Score=64.10 Aligned_cols=314 Identities=20% Similarity=0.309 Sum_probs=174.3
Q ss_pred cccccccCCC---CCcHHHHHHHHHHHhcccCCCCccCCCcEEE--eCChHH---HHHHHHHHhcCCCC----eEEEcCC
Q 011801 76 FKDIAIFQDY---HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM--GGGATG---ANELIMFCLANPGD----AFLVPSP 143 (477)
Q Consensus 76 ~~~~~~Y~~~---~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~--t~G~t~---al~~i~~~l~~~Gd----~vlv~~P 143 (477)
|..+.-|.|. +|+.++-..+.+++.+..| + |++.+ .+|+++ ++..+=..+-..|+ .-|+|.-
T Consensus 565 fanIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG----~--D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvS 638 (1001)
T KOG2040|consen 565 FANIHPFAPVEQAQGYQQLFTELEKDLCEITG----F--DSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVS 638 (1001)
T ss_pred hccCCCCCchHHHhhHHHHHHHHHHHhheeec----c--cceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeec
Confidence 3445555553 5888899999999988766 3 44444 444443 33333333434443 4566666
Q ss_pred CccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 144 ~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
.+...-..+... |.++++|.++..+ .+|..+|++..+++ ..+..++.++.|+. .|.. .+.+++++++..++
T Consensus 639 AHGTNPASA~Ma-gmkvvpV~~~~~G--~id~~dLk~kaekh---~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHeh 709 (1001)
T KOG2040|consen 639 AHGTNPASAAMA-GMKVVPVGCDANG--NIDMVDLKAKAEKH---KDNLAALMVTYPST-HGVF--EEGIDDICDIIHEH 709 (1001)
T ss_pred ccCCChhhHHhc-CCEEEEeeccCCC--CccHHHHHHHHHHh---hhhhheeEEecccc-cccc--cccHHHHHHHHHhc
Confidence 666555555655 9999999998644 68999999887765 33677899998864 3443 34699999999999
Q ss_pred CeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC----CceEEEEEeCCHHHHHHHHH----
Q 011801 224 NIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP----GFRVGIVYSFNDTVVNCGRK---- 293 (477)
Q Consensus 224 ~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~----G~RvG~i~~~~~~i~~~~~~---- 293 (477)
|.-|..|.+-..-.. ..+... ..|..+. -++|+|..| |-.+|=|-. ++.+..++-.
T Consensus 710 GGQVYlDGANMNAqVGlc~pGd~-----------GaDV~HL--NLHKTFcIPHGGGGPg~gPIgV-K~HLapfLP~HpVv 775 (1001)
T KOG2040|consen 710 GGQVYLDGANMNAQVGLCRPGDI-----------GADVCHL--NLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVV 775 (1001)
T ss_pred CCEEEecCCCccceecccCCccc-----------cccceee--cccceeeecCCCCCCCCCccch-hhhccccCCCCCcc
Confidence 999999987643211 111111 1122222 566666433 222343322 1111111100
Q ss_pred ---------------hcccCCCch-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE--
Q 011801 294 ---------------MSSFGLVSS-QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF-- 355 (477)
Q Consensus 294 ---------------~~~~~~vs~-~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~-- 355 (477)
..+|+..+. +..++-.+|+....+ +...+.-.-+..++.++|+.+---++....|+.
T Consensus 776 s~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL-----~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaH 850 (1001)
T KOG2040|consen 776 SPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGL-----KDASKIAILNANYMAKRLESHYKILFRGENGLVAH 850 (1001)
T ss_pred CCCCCCCCCCccceeccCCCcceeehhHHHHHHHhccccc-----chhhHHHhhhhHHHHHHHhhccceeEecCCcceee
Confidence 012222111 233455566665543 222222233557788888876322233222221
Q ss_pred -EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 356 -FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 356 -~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.++++++.+...++.. +..+++. ++|..- |--++. -+|.+=|-...- +.+++|++.+++-.+-++.+
T Consensus 851 EFIlD~r~fK~~agieav-DvAKRL~-DYgFHa-PTmswP--V~gtLMIEPTESE~k~ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 851 EFILDLRPFKKTAGIEAV-DVAKRLM-DYGFHA-PTMSWP--VAGTLMIEPTESEDKAELDRFCDALISIREEIA 920 (1001)
T ss_pred eeeeechhhccccCCcHH-HHHHHHH-hccCCC-Cccccc--cCCceEeccCccccHHHHHHHHHHHHHHHHHHH
Confidence 34788877665655554 5666654 667754 333332 355554543322 56788888777766655443
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0026 Score=70.49 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCccchHHHHhhhC---CcEEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPGDAFLVPSPYYAAFDRDLSWRT---GVQIVP 162 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~~Gd~vlv~~P~y~~~~~~~~~~~---g~~~~~ 162 (477)
-++...|++..+ .+-.|--+-.|+|.+-+.++.+.. +...+|+|+.-.+|.+...++.++ |++++.
T Consensus 127 ~e~Qtmi~~LtG--------m~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~ 198 (954)
T PRK12566 127 LNFQQMTIDLTG--------LDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV 198 (954)
T ss_pred HHHHHHHHHHhC--------chhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE
Confidence 345555555544 333444454566665554443331 124689999999998877665432 555553
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc-cccccccCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE-IYAATVFSSP 241 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De-~y~~~~~~~~ 241 (477)
+++++.+. .++.+|++.+| |-.|.+-+ +++|.+.++++|.++|+-- .-+-.+...|
T Consensus 199 -------------~~~~~~~~------~~~~~v~vq~P-~~~G~i~d---~~~i~~~~h~~gal~~~~~d~laL~ll~~P 255 (954)
T PRK12566 199 -------------DAVDNLAA------HAVFGALLQYP-DTHGEIRD---LRPLIDQLHGQQALACVAADLLSLLVLTPP 255 (954)
T ss_pred -------------cchhhcCC------CCEEEEEEECC-CCceEEcc---HHHHHHHHHHcCCEEEEEeCHHHHhCCCCh
Confidence 22333221 26889999999 57888855 8899999999988766221 1111111111
Q ss_pred CcccHHHhhhhccCCCCcEEEEe---cCCcccCCCCceEEEEEeCCHHHHHHHHH-------------------------
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIY---SLSKDMGLPGFRVGIVYSFNDTVVNCGRK------------------------- 293 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~---SlSK~~g~~G~RvG~i~~~~~~i~~~~~~------------------------- 293 (477)
. ..+..|+++ +|.=-+|..|--.||+.+.++.+...--+
T Consensus 256 g-------------e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHI 322 (954)
T PRK12566 256 G-------------ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHI 322 (954)
T ss_pred h-------------hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHh
Confidence 1 335556666 44455666677788988854322211000
Q ss_pred ----hcccCCCchHHHHHHH-HhcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc
Q 011801 294 ----MSSFGLVSSQTQYLLA-SMLS--DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE 366 (477)
Q Consensus 294 ----~~~~~~vs~~~q~~~~-~~L~--~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~ 366 (477)
.++.. ++.++-.++. .+.. .+ .+-+++..++...+..++.+.|.+.|+++... .+|=-+.+.- ..
T Consensus 323 RReKAtSNI-CT~qaL~A~~a~~Y~~~~G---p~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~--~~ 394 (954)
T PRK12566 323 RREKANSNI-CTAQVLLANIAGFYAVYHG---PEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEV--GG 394 (954)
T ss_pred hhccccchh-hHHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEc--cC
Confidence 00111 1112111111 1110 11 22356777778888889999999999876533 3453333331 10
Q ss_pred cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHH
Q 011801 367 KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIA 421 (477)
Q Consensus 367 ~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~ 421 (477)
...++.+..+ +.||+++-- .++.+.|++... ++++++.++..+.
T Consensus 395 ----~~~~~~~~a~-~~~~n~r~~------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 395 ----AQAAIIESAE-AARINLRIL------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred ----CHHHHHHHHH-HCCCeeEEe------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 0113444444 458988742 245688888654 7889998888884
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0027 Score=71.68 Aligned_cols=205 Identities=15% Similarity=0.117 Sum_probs=133.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh------cCCCCeEEEcCCCccchHHHH
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL------ANPGDAFLVPSPYYAAFDRDL 152 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l------~~~Gd~vlv~~P~y~~~~~~~ 152 (477)
..-|.++.|...||..||.||+..++ +++.+++|++.+.-..|++.+++.+ ++.+.+-.+| ..+...+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 492 (1082)
T PLN02672 419 YFPCEPPAGSKRFRNLIAGFMRIYHH--IPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP----KKWLTSL 492 (1082)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcC--CcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC----HHHHhHh
Confidence 34577888999999999999999988 7789999999999999999888775 3333222222 1222222
Q ss_pred hhh-------CC--cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc
Q 011801 153 SWR-------TG--VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK 223 (477)
Q Consensus 153 ~~~-------~g--~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~ 223 (477)
... .+ +.++.-|.. .+.+.+.+++. ++++|+..-. .+-..+....+.|++.+++-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 556 (1082)
T PLN02672 493 AIENATSDSKSDDVITVIEAPRQ--------SDLVIELIKKL-----KPQVVVTGMA---DFEMRTSTAFEHLLNVTAEI 556 (1082)
T ss_pred hhhcccccCccCCeEEEEeCCCc--------chHHHHHHHhC-----CCeEEEEecc---chhhhhHHHHHHHHHHHHhh
Confidence 222 01 222222221 23566777665 7887765422 24445666799999999999
Q ss_pred CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCc
Q 011801 224 NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVS 301 (477)
Q Consensus 224 ~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs 301 (477)
|++++.|+.-.-..-+.+....+..++... ..+.+..+++.+-|.-=.+.+-+.++++-++.+...+.+. -.++..+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1082)
T PLN02672 557 GARLFLDISDHLELSSLPGSNGVLKYLAGH-PLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGRTA 635 (1082)
T ss_pred CcEEEEehhhheeeccCCCcccHHHHhcCC-CCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccchH
Confidence 999999986542212233334444444321 1356667788898875569999999999888887766543 2344455
Q ss_pred hHHHH
Q 011801 302 SQTQY 306 (477)
Q Consensus 302 ~~~q~ 306 (477)
.++|+
T Consensus 636 ~~~~~ 640 (1082)
T PLN02672 636 IISQF 640 (1082)
T ss_pred HHHHH
Confidence 56665
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.017 Score=56.71 Aligned_cols=332 Identities=14% Similarity=0.119 Sum_probs=168.3
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.+.+||.+...++++.++..-+..-+ +...|.+.++-..+-.+ + .++-+...+-+.+..+ ++-+-+=+++-+
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~---~~g~g~svme~SHRsk~--~-~~v~~~a~~~lreLl~--iPd~Y~VlflqG 76 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLD---WNGLGMSVMEISHRSKE--F-KNVLEEAEKDLRELLN--IPDDYKVLFLQG 76 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhh---hccCCcceeeeccccHH--H-HHHHHHHHHHHHHHhC--CCCCceEEEEcC
Confidence 45788888887887766555433110 11112221111111111 1 2222222233333333 433333455566
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-HhhhCCc--EEEEEeccCCCCcc--cCHHHHHHHHHHHHHhCCCee
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRD-LSWRTGV--QIVPVHCDISNNFK--ITREALEAAYERAQEASINIK 193 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-~~~~~g~--~~~~v~~~~~~~f~--i~~~~l~~~~~~~~~~~~~~k 193 (477)
|+|+..+.+...|+....+-.+.+-+|..+... ++.. +. .+...... ..+|. ++++.++ +. .+..
T Consensus 77 Gat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~-~~~~~~~~~~~~-~~~~~~iP~~~~~~--~~------~~~a 146 (365)
T COG1932 77 GATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKV-GKQPKLIDARIE-EAGYGSIPDLSKWD--FS------DNDA 146 (365)
T ss_pred ccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHHHh-ccccccccccee-ccCccCCCChhhcc--cC------CCcc
Confidence 799999999988876554313344445444321 2223 32 22222211 22222 2333222 11 1233
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
.|.+|.-..-+|+-++. ...+.. +.++|+|-.-.. +..+ +.+..+ + ++-.+.-|.+|..
T Consensus 147 yv~~~~NeTi~Gv~v~~--~p~~~~-----~~~~v~D~SS~i--lsr~--iDvsk~--------d--viyagaQKnlGpa 205 (365)
T COG1932 147 YVHFCWNETISGVEVPE--LPDIGS-----DGLLVADASSAI--LSRP--IDVSKY--------D--VIYAGAQKNLGPA 205 (365)
T ss_pred EEEEecCCcccceEccC--CCCCCC-----CceEEEecccHH--hcCC--CChhHc--------c--eEEEehhhccCcc
Confidence 46666545567877661 111111 278899987652 3322 333322 2 4557889999988
Q ss_pred CceEEEEEeCCHHHHHHHHH--------------hcccCCCchHHHHHHHH----hcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 274 GFRVGIVYSFNDTVVNCGRK--------------MSSFGLVSSQTQYLLAS----MLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~--------------~~~~~~vs~~~q~~~~~----~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
| ++.++.+++.+...... -+.|.+.+.++-+.+.. +.+.+. ++...++-++..+.
T Consensus 206 G--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG-----l~~~~~rn~~ka~~ 278 (365)
T COG1932 206 G--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG-----LEALEARNQAKAQL 278 (365)
T ss_pred c--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH
Confidence 8 88888877665443221 12234444454444332 223444 23444555666677
Q ss_pred HHHHHhhCCCe---Ee-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCH
Q 011801 336 FTKGLEQVGIN---CL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDD 410 (477)
Q Consensus 336 l~~~L~~~gi~---~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~ 410 (477)
|.+.+++.++- +. ...+-+-+.+++.. ..+ +..+.+.+. +.|+...-| +- -+|.+|+++-+ ++.
T Consensus 279 LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~----~~l--d~~fv~eae-~~gl~~lkG---hr-~vgGmRasiynA~~~ 347 (365)
T COG1932 279 LYDWIDKSDFYRNLVAKANRSRMNVTFTLVD----AEL--DKGFVAEAE-AAGLIYLKG---HR-SVGGLRASIYNAVPL 347 (365)
T ss_pred HHHHHHhCCccccccchhhccceeEEEEcCc----HHH--HHHHHHHHH-HcCCceecc---cc-CCCceeeeeecCCCH
Confidence 88888776431 11 12233445555552 111 223555544 457777666 22 24459999966 599
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011801 411 DTLQVALNRIAAFVQQD 427 (477)
Q Consensus 411 e~l~~~l~~l~~~~~~~ 427 (477)
|+++.+++-|+.|.+++
T Consensus 348 e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 348 EDVEALTDFMDWFEETY 364 (365)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999888764
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.018 Score=53.89 Aligned_cols=254 Identities=18% Similarity=0.249 Sum_probs=127.1
Q ss_pred CcEEEEEe-ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 157 GVQIVPVH-CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 157 g~~~~~v~-~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|.+.+-+. +-..+...-|+++++..+++. | ...|+........=..-+++.+++|..+|..|++.-|+..+|.
T Consensus 124 gfepiiie~i~d~d~l~tdleav~~~iee~---g--~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayg- 197 (432)
T KOG3843|consen 124 GFEPIIIENILDGDELITDLEAVEAIIEEL---G--EDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG- 197 (432)
T ss_pred CCCceeeeccccchHHHHhHHHHHHHHHHh---C--CceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccc-
Confidence 88766554 223344555788888887764 3 3333322211111122356789999999999999999999997
Q ss_pred cccCCCC-cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCC
Q 011801 236 TVFSSPK-FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 236 ~~~~~~~-~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~ 314 (477)
..... ..-++...+ ......++.|+-|.|-.| ..-+.|.+.++..++...++.+....++++..++..+|..
T Consensus 198 --lqsee~i~~iaa~~~----~grida~vqsldknf~vp-vggaiia~fk~n~iq~iak~ypgrasa~ps~dllitll~~ 270 (432)
T KOG3843|consen 198 --LQSEECIHKIAAAAE----CGRIDAFVQSLDKNFMVP-VGGAIIAAFKDNFIQEIAKMYPGRASASPSLDLLITLLSL 270 (432)
T ss_pred --cchHHHHHHHHHHhh----hccHHHHHHHhhhcceee-cchhHhhHhHHHHHHHHHHhCCCccccCccHHHHHHHHHh
Confidence 33222 122222111 112235678999999655 1222344456666666666655544455566666666654
Q ss_pred h--hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCe---EEe
Q 011801 315 D--EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL---NVS 388 (477)
Q Consensus 315 ~--~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI---~v~ 388 (477)
+ .| .+.+.+..+-....+..+.+.-+..|-.++ .|+.....-+.+......+ +....++-.++-..|| .|.
T Consensus 271 gqn~f-~e~~~eqkemf~~l~~ki~~~ae~~~e~l~~~p~n~is~amtl~ti~~~k--~kavt~~gsilfak~isgarvv 347 (432)
T KOG3843|consen 271 GQNAF-KELFGEQKEMFLKLRNKIIKFAEAIGECLLETPENEISLAMTLKTIDEAK--DKAVTLFGSILFAKGISGARVV 347 (432)
T ss_pred chhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCchhhhhhhhccCChHH--hhHHHHHHHHHHhccccCceEe
Confidence 3 33 223333333333333444444444442111 2222222333333221111 1111233344444454 344
Q ss_pred CCCCCCCCCC----------------CEEEEEe-ccCCHHHHHHHHHHHHHHHhh
Q 011801 389 PGSSFQCTEP----------------GWFRVCF-ANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 389 pg~~f~~~~~----------------~~~Rl~~-~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|.+.....-+ +++-... -.|++.++++++.||.+.+..
T Consensus 348 ~~~q~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~ 402 (432)
T KOG3843|consen 348 PLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAA 402 (432)
T ss_pred eccccceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHH
Confidence 4433211101 2333322 125788999999999877654
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.2 Score=48.06 Aligned_cols=303 Identities=12% Similarity=0.108 Sum_probs=166.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCC---eEEEcCCCccc----hHHHHhhhCCcE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGD---AFLVPSPYYAA----FDRDLSWRTGVQ 159 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd---~vlv~~P~y~~----~~~~~~~~~g~~ 159 (477)
+-......++...+ ...++|.+.+.-|--++.++..|.+|-. +||++.-.||. +...++.. |..
T Consensus 112 ~De~il~l~~~iVG--------A~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lh-G~~ 182 (465)
T KOG3846|consen 112 IDEPILPLLAPIVG--------AQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLH-GIS 182 (465)
T ss_pred cchhhhhhhhhhcc--------CCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhc-CCC
Confidence 33444445555544 5567899999999999999999988864 68888877765 33444544 554
Q ss_pred E--EEEeccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 160 I--VPVHCDI-SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 160 ~--~~v~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
+ ..+.+.+ ++.-.+..+++.+.+++ .+..+.+|++.--+.-||+.++ +.+|-..-+.+|++|=.|-+++
T Consensus 183 ~e~sm~~iePREGEetlRteDILd~IEk---ngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA-- 254 (465)
T KOG3846|consen 183 PENSMIQIEPREGEETLRTEDILDTIEK---NGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA-- 254 (465)
T ss_pred hHHheEEecccccccchhHHHHHHHHHh---cCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh--
Confidence 2 1122221 23334566777777664 4567777788888899999999 6777665567899998998887
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC-----------------
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL----------------- 299 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~----------------- 299 (477)
++.-+.. +. .++..+.++.--|.+....-.+|-+....+.......++..+|.
T Consensus 255 -vgNVpL~-----LH----dWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lip 324 (465)
T KOG3846|consen 255 -VGNVPLQ-----LH----DWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIP 324 (465)
T ss_pred -hcCCceE-----Ee----ecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCc
Confidence 5443311 11 45666677776787642223466666655544433333332221
Q ss_pred ------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCeEecCCceEEEEeeccchhhcc-
Q 011801 300 ------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-----GINCLKSNAGLFFWMDLRHLLKEK- 367 (477)
Q Consensus 300 ------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-----gi~~~~~~~g~~~~~~l~~~~~~~- 367 (477)
.|.+......++.+.-+. +.+...+.+++|.-.++.-|+.+ |........-+|+.+-.|......
T Consensus 325 Ga~GfRiSNPpi~~v~al~~SLe~---F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erG 401 (465)
T KOG3846|consen 325 GALGFRISNPPIIDVVALRSSLEL---FAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERG 401 (465)
T ss_pred cccccccCCCcHhHHHHHHhhHHH---HHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCccccccc
Confidence 222222333344443222 22333444555544444433321 211000001122222222111100
Q ss_pred -----CchHH-HHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 368 -----TLEGE-IALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 -----~~~~e-~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
.|... ...+.. +.++|+..- ...|+.+|+...-+ +-.++..++..|.+++..
T Consensus 402 cQLsl~Fssp~~~vfqe-L~krGv~~D------kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~ 461 (465)
T KOG3846|consen 402 CQLSLYFSSPTPKVFQE-LHKRGVIGD------KRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDK 461 (465)
T ss_pred ceEEEEeCCCchHHHHH-HHHcCeecc------ccCCCceEeecchhhccHHHHHHHHHHHHHHHHH
Confidence 00000 123344 446688652 23578899987543 668899999999988865
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.38 Score=45.76 Aligned_cols=334 Identities=14% Similarity=0.135 Sum_probs=171.9
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCC-CcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYH-GLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~-G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
|..+|+|+.+.-.+|.+.+.+.-++.- .+..-|++..+-..+=.+.. -+.+-...+.+.++ ++-.-+-++
T Consensus 5 ~~~vvnFaaGPAklp~~VL~e~qkdl~---n~~g~GisV~EmSHRsk~f~kii~~tes~lreLln------iPdn~~vlf 75 (370)
T KOG2790|consen 5 PERVVNFAAGPAKLPESVLLEAQKDLL---NFNGSGISVMEMSHRSKDFAKIINDTESLLRELLN------IPDNYKVLF 75 (370)
T ss_pred ccceeecCCCcccCCHHHHHHHHHHhh---ccCCCcceEEEecccchhHHHHHHHHHHHHHHHHc------CCCceeEEE
Confidence 667899999988888877777655421 13333333221111111110 12223333444443 332233466
Q ss_pred EeCChHHHHHHHHHHhc--CCC---CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCc--ccCHHHHHHHHHHHHHh
Q 011801 116 MGGGATGANELIMFCLA--NPG---DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNF--KITREALEAAYERAQEA 188 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~--~~G---d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f--~i~~~~l~~~~~~~~~~ 188 (477)
+-.|+|+-...+...|+ +.| |.|+.-.++--.+.++-+.- ....+..+..+- .| -+|.+.++.
T Consensus 76 ~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~-~~~~V~~~~k~y-~ygkvPd~~~w~~-------- 145 (370)
T KOG2790|consen 76 LQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYG-TPNIVIPKLKSY-TYGKVPDPSTWEL-------- 145 (370)
T ss_pred EeCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHhhC-CceEEecccccc-ccCcCCChhhccc--------
Confidence 67778877777766665 444 67777776665666654422 333443333221 11 123333332
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
+++-+.|++|.--.--|.-++.-. .-.-++..+|+|-.-- |-..+ ..+. ..-++....-|
T Consensus 146 ~~da~yvyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSn---flSrp-vDvs----------k~gvi~aGAQK 205 (370)
T KOG2790|consen 146 NPDASYVYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSN---FLSRP-VDVS----------KFGVIFAGAQK 205 (370)
T ss_pred CCCccEEEEecCceeeceecCCCC------CCCCCCceEEEecccc---hhcCC-ccch----------hcceEEecccc
Confidence 446667888755455566554211 1124688889987654 44443 2222 22255678899
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHH-------------hcccCCCchHHH----HHHHHhcCChhhHHHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRK-------------MSSFGLVSSQTQ----YLLASMLSDDEFVDNFLVETSKRLAK 331 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~-------------~~~~~~vs~~~q----~~~~~~L~~~~~~~~~~~~~~~~l~~ 331 (477)
.+|.+|+- .++..++.+-..... -+-|.+.+.++. ..+..+++.+.. +...+.-.+
T Consensus 206 N~G~aG~T--vvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl-----~a~e~~n~~ 278 (370)
T KOG2790|consen 206 NVGPAGVT--VVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGL-----AAMEKLNQE 278 (370)
T ss_pred ccCccccE--EEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccH-----HHHHHHHHH
Confidence 99988844 444444433222111 012233332222 234555566653 333444455
Q ss_pred HHHHHHHHHhhC-CCeEec--C--CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec
Q 011801 332 RHHNFTKGLEQV-GINCLK--S--NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406 (477)
Q Consensus 332 r~~~l~~~L~~~-gi~~~~--~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~ 406 (477)
..+.+.+.+.+. |+-..+ + .+-+-+-+++.+ . +-|.+|.+...++ +..-.-|. ..-|.+|-++=
T Consensus 279 KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~----d--~Le~eFLkeA~~~-~mv~LKGh----RSVGGiRASlY 347 (370)
T KOG2790|consen 279 KSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEK----D--ELEAEFLKEAAKE-HMVQLKGH----RSVGGIRASLY 347 (370)
T ss_pred HHHHHHHHHHhcCCeEEcccchhhhhhcccceeecc----h--HHHHHHHHHHHHh-hhhccccc----cccccchhhhh
Confidence 667788888775 532211 1 111222233331 1 2234566666655 33322332 12456999996
Q ss_pred c-CCHHHHHHHHHHHHHHHhhh
Q 011801 407 N-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 407 ~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+ ++-++.+.+++-+++|.+.+
T Consensus 348 NAisv~~~q~L~~~m~~F~k~h 369 (370)
T KOG2790|consen 348 NAISVEEVQKLAAFMKEFQKKH 369 (370)
T ss_pred ccccHHHHHHHHHHHHHHHHhc
Confidence 5 48899999999998887653
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=2.1 Score=45.42 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=124.1
Q ss_pred cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHH
Q 011801 132 ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRD 211 (477)
Q Consensus 132 ~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~ 211 (477)
...+.++++..-+|+.....++.++ +...+.++- .|+ +++... ...+.++++-.| +--|.+.+
T Consensus 202 ~~krkk~vvd~~~hpqtlsV~~TRa--~~~~i~v~~-----~~~---~~~~~s----~~~v~gvlvQYP-~t~G~i~d-- 264 (1001)
T KOG2040|consen 202 INKRKKFVVDSNCHPQTLSVVKTRA--KGFGIKVVV-----SDI---KEADYS----SKDVSGVLVQYP-DTEGSVLD-- 264 (1001)
T ss_pred hcccceEEecCCCCcchhhhhhccc--cccceeEEe-----cCH---HHhhcc----ccceeEEEEEcC-CCCCcccC--
Confidence 3456779999999998887776543 222121111 122 222111 236888888877 55788888
Q ss_pred HHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC----CceEEEEEeC----
Q 011801 212 TLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP----GFRVGIVYSF---- 283 (477)
Q Consensus 212 ~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~----G~RvG~i~~~---- 283 (477)
..++++.++..+.++++-.--..+..-.++ . ..+..|.++|- --||+| |--.||..+.
T Consensus 265 -~~el~~~a~~~~s~vv~atDLLaLtiLrpP----g--------efGaDIavGSs-QRFGVPlGYGGPHAaFfAv~~~l~ 330 (1001)
T KOG2040|consen 265 -FDELVELAHANGSLVVMATDLLALTILRPP----G--------EFGADIAVGSS-QRFGVPLGYGGPHAAFFAVSESLV 330 (1001)
T ss_pred -HHHHHHHhhccCceEEEeehhhHHHccCCh----h--------hcCceeeeccc-cccCccccCCCchHHHHHHHHHHH
Confidence 555666666888777653322212111111 0 23455666663 334433 1111111110
Q ss_pred ----------------CHHHHHHHHHh-----cccCCCch-HHHHHHHHhcCChhhH--HHHHHHHHHHHHHHHHHHHHH
Q 011801 284 ----------------NDTVVNCGRKM-----SSFGLVSS-QTQYLLASMLSDDEFV--DNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 284 ----------------~~~i~~~~~~~-----~~~~~vs~-~~q~~~~~~L~~~~~~--~~~~~~~~~~l~~r~~~l~~~ 339 (477)
++...-++... +.-.+.+. .+|++++.|-.-.... .+-+++..+++......|..+
T Consensus 331 R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~ 410 (1001)
T KOG2040|consen 331 RMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEG 410 (1001)
T ss_pred hhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100 11111121 3455554443211100 234667777777777888889
Q ss_pred HhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHH
Q 011801 340 LEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALN 418 (477)
Q Consensus 340 L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~ 418 (477)
|+..|-++.. -.||=.++++-... ..++..+.+++ +|+++- -+++.+=+++-.. ++++++.++.
T Consensus 411 l~~aghel~~--k~fFDTLkI~~~~s------~~~~l~rA~~~-~iNlr~------~ed~tigvslDETv~~~DvddLl~ 475 (1001)
T KOG2040|consen 411 LKNAGHELQH--KPFFDTLKIRCGCS------AEEVLDRAAKR-QINLRL------VEDGTIGVSLDETVTEKDVDDLLW 475 (1001)
T ss_pred Hhhcchhhcc--ccccceEEEEecCc------HHHHHHHHHhh-cCceEE------eecCceEEeecccccHHHHHHHHH
Confidence 9888754432 22565555542211 11355555544 677652 2466677777543 7888888888
Q ss_pred HHH
Q 011801 419 RIA 421 (477)
Q Consensus 419 ~l~ 421 (477)
.+.
T Consensus 476 vf~ 478 (1001)
T KOG2040|consen 476 VFN 478 (1001)
T ss_pred HHc
Confidence 775
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.07 E-value=7.6 Score=37.65 Aligned_cols=140 Identities=18% Similarity=0.289 Sum_probs=84.1
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
+..+-+++|+|+.+.=..+..-|++.|-++++-+-.=.+.. +.++.. | ++..+.||-+ +.+++.+..++.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-g-~~~~y~cdis-----~~eei~~~a~~V 108 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-G-EAKAYTCDIS-----DREEIYRLAKKV 108 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-C-ceeEEEecCC-----CHHHHHHHHHHH
Confidence 45567888888888878888889999987766554433333 333333 5 6666777643 467777777766
Q ss_pred HHhCCCeeEEEEeCCC---CCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhcc-CCCCcEE
Q 011801 186 QEASINIKGLIITNPS---NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD-CNRDLIH 261 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~---NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~-~~~~~vi 261 (477)
+++.+.+. |+++|.. .-...-.+.+++++..++ |+ .+ .|....++++.+- .+.+.++
T Consensus 109 k~e~G~V~-ILVNNAGI~~~~~ll~~~d~ei~k~~~v----N~-------~~-------~f~t~kaFLP~M~~~~~GHIV 169 (300)
T KOG1201|consen 109 KKEVGDVD-ILVNNAGIVTGKKLLDCSDEEIQKTFDV----NT-------IA-------HFWTTKAFLPKMLENNNGHIV 169 (300)
T ss_pred HHhcCCce-EEEeccccccCCCccCCCHHHHHHHHHH----hh-------HH-------HHHHHHHHhHHHHhcCCceEE
Confidence 66666776 5777763 233344688888888774 22 11 1223333333221 1456666
Q ss_pred EEecCCcccCCCC
Q 011801 262 IIYSLSKDMGLPG 274 (477)
Q Consensus 262 iv~SlSK~~g~~G 274 (477)
.+.|..=-+|.+|
T Consensus 170 ~IaS~aG~~g~~g 182 (300)
T KOG1201|consen 170 TIASVAGLFGPAG 182 (300)
T ss_pred EehhhhcccCCcc
Confidence 6777655566554
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=84.43 E-value=14 Score=32.12 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=61.6
Q ss_pred EEEeCChHHHHHHHHHHhcCCCC-eEEEcCCC--ccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 114 IVMGGGATGANELIMFCLANPGD-AFLVPSPY--YAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd-~vlv~~P~--y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+++|+|+++.=..+...|+..|+ .|++.... ..... ..++.. +.++..+++|-. +.+.+++.+++..+
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-GAKITFIECDLS-----DPESIRALIEEVIK 76 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-TSEEEEEESETT-----SHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-cccccccccccc-----cccccccccccccc
Confidence 56666665555556666777765 44544444 23222 223434 788888888743 57888888888776
Q ss_pred hCCCeeEEEEeCCCCCcccC--CCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~--~~~~~l~~l~~~ 219 (477)
....+..++.+....+.+.. ++.+++++..+.
T Consensus 77 ~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~ 110 (167)
T PF00106_consen 77 RFGPLDILINNAGIFSDGSLDDLSEEELERVFRV 110 (167)
T ss_dssp HHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhcccc
Confidence 66788877766554444433 345666666553
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=25 Score=33.33 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=55.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|++.|-.|++..-.-.......... +.++..+++|-. +.+++++++++..+...+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-GERARFIATDIT-----DDAAIERAVATVVARFGR 80 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCeeEEEEecCC-----CHHHHHHHHHHHHHHhCC
Confidence 45677766555445555677788988877654333233333333 556666666642 467777777766555456
Q ss_pred eeEEEEeCCC-CCcccCCCHHHHHHHH
Q 011801 192 IKGLIITNPS-NPLGTTLDRDTLKSLV 217 (477)
Q Consensus 192 ~k~vii~nP~-NPtG~~~~~~~l~~l~ 217 (477)
+.+++.+-.. .+.+...+.+++++..
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~~~ 107 (261)
T PRK08265 81 VDILVNLACTYLDDGLASSRADWLAAL 107 (261)
T ss_pred CCEEEECCCCCCCCcCcCCHHHHHHHH
Confidence 7765443221 1222334545555443
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.04 E-value=18 Score=33.49 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=63.1
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCe---EEEcCCC----c-------cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 114 IVMGGGATGANELIMFCLANPGDA---FLVPSPY----Y-------AAFDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~---vlv~~P~----y-------~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
+.+-+|+-....++..++ +.|.. ++...|. | ......++. .|+.++...... ...-..++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~-~gi~l~~~~~~g--~~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEA-MGIPLVTFDTSG--EEEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHh-cCCceEEEecCc--cchhhHHHHH
Confidence 566777777777776665 33421 1111111 1 111122333 388877777542 2344678888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEE
Q 011801 180 AAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLV 228 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI 228 (477)
++++.. ++.+|+ +|.+++..++..+-.+|++.|+.++
T Consensus 80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~ 116 (223)
T COG2102 80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKVY 116 (223)
T ss_pred HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe
Confidence 888754 556666 6999999999999999999998654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 477 | ||||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 0.0 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-154 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-154 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-154 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 1e-146 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-21 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 1e-19 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 4e-19 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 2e-16 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 3e-16 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 7e-16 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 8e-16 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 8e-16 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-15 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 8e-15 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 9e-15 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-14 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 3e-14 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 5e-14 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 8e-14 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 1e-13 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 2e-13 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 4e-13 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 2e-12 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-12 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 3e-12 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 1e-11 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 2e-11 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 1e-10 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 1e-10 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 2e-09 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-09 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 1e-08 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 1e-07 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 2e-07 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-07 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 2e-07 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 7e-07 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 7e-07 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 1e-06 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 1e-06 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 2e-06 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 3e-06 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 6e-06 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 7e-06 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 9e-06 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 2e-05 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-05 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 3e-05 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 4e-05 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 5e-05 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 1e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 1e-04 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 2e-04 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 2e-04 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 3e-04 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 5e-04 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 7e-04 |
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 664 bits (1715), Expect = 0.0
Identities = 238/434 (54%), Positives = 322/434 (74%), Gaps = 5/434 (1%)
Query: 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWIT 60
M +LS+ AT N HG+DS+YF GW+ +++NP+H N G+IQ+GLAENQLCFDL++ W+
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 61 KNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA 120
KNP A+ G +F ++A+FQDYHGLP F++A+ FM + RG +VTFDP+ +V+ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 121 TGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180
T ANE +FCLA+PG+A L+P+PYY FDRDL WRTGV+IVP+HC SN F+IT ALE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180
Query: 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240
AY+ A++ ++ +KG+++TNPSNPLGTT+ R+ L L+SF+ DK IHL+ DEIY+ T FSS
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 241 PKFTSVAEVIQEMDCN-----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS 295
P F SV EV+++ +C+ +H++YSLSKD+GLPGFRVG +YS +D VV KMS
Sbjct: 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300
Query: 296 SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355
SFGLVSSQTQ+LL++MLSD + N++ E KRL +R GL++ GI+CL NAGLF
Sbjct: 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLF 360
Query: 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQV 415
W+D+RHLL+ T E E+ LW+ IV +V LN+SPGSS CTEPGWFRVCFAN+ + TL +
Sbjct: 361 CWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420
Query: 416 ALNRIAAFVQQDKE 429
A+ R+ AFV +
Sbjct: 421 AMQRLKAFVGEYYN 434
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 659 bits (1703), Expect = 0.0
Identities = 309/429 (72%), Positives = 369/429 (86%), Gaps = 4/429 (0%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
ILSK+ATN HGE+S YFDGWKA+D +PFHP +NP GVIQ+GLAENQLC DLI+DWI +N
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P SIC+ EG++ FK IA FQDYHGLPEFR+A+AKFM K RGGRV FDP+R+VM GGATG
Sbjct: 61 PKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE I+FCLA+PGDAFLVPSPYY AF+RDL WRTGVQ++P+HC+ SNNFKIT +A++ AY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E AQ+++I +KGLI+TNPSNPLGTTLD+DTLKS++SF N NIHLVCDEIYAATVF +P+
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 243 FTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
F S+AE++ E + CN+DL+HI+YSLSKDMGLPGFRVGI+YSFND VVNC RKMSSFGL
Sbjct: 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGL 299
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VS+QTQY LA+MLSD++FVDNFL E++ RL KRH +FT GLE VGI CLK+NAGLF WMD
Sbjct: 300 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMD 359
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
LR LL+E T + E++LWR I+NDVKLNVSPGSSF+C EPGWFRVCFANMDD T+ +AL R
Sbjct: 360 LRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALAR 419
Query: 420 IAAFVQQDK 428
I FV +K
Sbjct: 420 IRRFVGVEK 428
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 7e-49
Identities = 73/363 (20%), Positives = 138/363 (38%), Gaps = 59/363 (16%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G R+ +A + + + +++ G + A +L + LANPG LVP P +
Sbjct: 97 GFLSSREEIASYY-HCPEAPL--EAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGF- 152
Query: 147 AFDRDLSWRTGVQ---IVPVH--CDISNNFKITREALEAAYERAQEASINIKGLIITNPS 201
++T + I +++I + LE LI+ NPS
Sbjct: 153 -----SLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYL------IDEKTACLIVNNPS 201
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G+ + L+ +++ + + ++ DEIY VFS K+ +A + I
Sbjct: 202 NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL-----STDVPIL 256
Query: 262 IIYSLSKDMGLPGFRVG-IVYS-----FNDTVVNCGRKMSSFGL-VSSQTQYLLASMLSD 314
L+K +PG+R+G I+ F + + + K+S L + Q L S+L
Sbjct: 257 SCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCR 316
Query: 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEI 373
F T L L + G+ ++ + ++ + + E+
Sbjct: 317 TP--GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGI-----------EM 363
Query: 374 ALWRTIVNDV----------KLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
+ NDV ++ P + F+ P + RV + + + A +RI F
Sbjct: 364 EHFPEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRIQEF 420
Query: 424 VQQ 426
+Q
Sbjct: 421 CEQ 423
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 3e-48
Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 35/367 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYY 145
G+ R A+A + R G + D I + GA+ L+M L N D LVP P Y
Sbjct: 135 GIHGLRDAIASGI-ASRDG-FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQY 192
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ ++ G VP + + S + + ++ E A+ IN++ L++ NP NP G
Sbjct: 193 PLYSASIALHGGAL-VPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS-SPKFTSVAEVIQEM-DCNRDLIHII 263
L + +V F ++ + L+ DE+Y ++ + KF S ++++ + DL +
Sbjct: 252 QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVS 311
Query: 264 Y-SLSK-DMGLPGFRVG--IVYSFNDTVVNCGRKMSSFGLVSS-QTQYLLASML----SD 314
Y S+SK G G R G + F+ V K++S L S+ Q L + ++ +
Sbjct: 312 YQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKAS 371
Query: 315 DEFVDNFLVETS---KRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLE 370
DE ++ E LA+R ++ GI C ++ ++ + + K
Sbjct: 372 DESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAI--- 428
Query: 371 GEIALWRTIVNDV----------KLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNR 419
E A D + V PGS F Q FR +D + ++R
Sbjct: 429 -EAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILP-QEDKIPAVISR 486
Query: 420 IAAFVQQ 426
F +
Sbjct: 487 FTVFHEA 493
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 5e-46
Identities = 73/349 (20%), Positives = 141/349 (40%), Gaps = 42/349 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G P F+++V++ P++I+ GATGAN L+++ L PGD + P Y
Sbjct: 64 GSPAFKKSVSQLY-------TGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQ 116
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
D+ G ++ + N + E L K + I N +NP G
Sbjct: 117 QLY-DIPKSLGAEVDLWQIEEENGWLPDLEKLRQL------IRPTTKMICINNANNPTGA 169
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
+DR L+ LV ++ +++ DE+Y + S+ EV D + SL
Sbjct: 170 VMDRTYLEELVEIASEVGAYILSDEVYRSFSELD--VPSIIEV-------YDKGIAVNSL 220
Query: 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--VSSQTQYL-LASMLSDDEFVDNFLV 323
SK LPG R+G V + N V + R + + + ++ E ++
Sbjct: 221 SKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRH 279
Query: 324 ETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382
+ LA + +E+ ++ ++ ++ + ++ +
Sbjct: 280 ILEENLAI----LDQWIEEEPLVSYIRPAVVSTSFVKI------AVDMPMEDFCLQLLQE 329
Query: 383 VKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ-DKES 430
+ + PG+ F G+ R+ FA + +TL L +++ F+++ DKE+
Sbjct: 330 HGVLLVPGNRF--ERDGYVRLGFAC-EQETLIKGLEKLSQFLRRFDKEN 375
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 8e-46
Identities = 74/363 (20%), Positives = 145/363 (39%), Gaps = 49/363 (13%)
Query: 87 GLPEFRQAVAKFM----GKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS 142
G PE R+AVA + + T D +V+ G + + + + + GD LVP
Sbjct: 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQ 135
Query: 143 PYYAAFDRDLSWRTGVQ---IVPVH--CDISNNFKITREALEAAYERAQEASINIKGLII 197
P + + T + I C N+++ + + K LI+
Sbjct: 136 PGF------PHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRL------KDDKTKLLIV 183
Query: 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF----SSPKFTSVAEVIQEM 253
TNPSNP G+ R ++ +V + + L DEIYA VF + FTSVA+ +
Sbjct: 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 243
Query: 254 DCNRDLIHIIYS-LSKDMGLPGFRVG-IVYS----FNDTVVNCGRKMSSFGL-VSSQTQY 306
+I +K++ +PG+R+G ++Y + + +++ + Q
Sbjct: 244 PR------VILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQA 297
Query: 307 LLASMLS--DDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHL 363
L L E +D + ++ + + + G+ ++ + L
Sbjct: 298 ALGEALLNTPQEHLD----QIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID-L 352
Query: 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
K + ++ ++ + ++ + + V PG+ F PG+ R+ + + A+ RI AF
Sbjct: 353 EKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEVYREAVERIKAF 409
Query: 424 VQQ 426
Q+
Sbjct: 410 CQR 412
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 5e-44
Identities = 84/371 (22%), Positives = 147/371 (39%), Gaps = 39/371 (10%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGD----AFLVPS 142
G+ R+ VA ++ + R G V DPD I + GA+ I+ L + G ++P
Sbjct: 130 GVNCIREDVAAYITR-RDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPI 188
Query: 143 PYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
P Y + +S +Q V + D N + + L A + A++ + K L I NP N
Sbjct: 189 PQYPLYSAVISELDAIQ-VNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGN 246
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS-SPKFTSVAEVIQEMD--CNRDL 259
P G R ++ ++ F ++ + L+ DE+Y V+S +F S +V+ EM + ++
Sbjct: 247 PTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNV 306
Query: 260 IHIIY-SLSKD-MGLPGFRVG--IVYSFNDTVVNCGRKMSSFGLVSSQT-QYLLASMLSD 314
+ S SK MG G+R G V + + + K+ S L + Q + +++
Sbjct: 307 ELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNP 366
Query: 315 DEFVD-------NFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKE 366
+ LAK+ QV GI+C ++ + + K
Sbjct: 367 PVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKA 426
Query: 367 KTLEGEIALWRTIVNDV----------KLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQV 415
E A + D+ + V PGS F Q FR+ + L+
Sbjct: 427 V----EAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PVEKLKT 481
Query: 416 ALNRIAAFVQQ 426
L ++ F
Sbjct: 482 VLQKVKDFHIN 492
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 2e-43
Identities = 76/365 (20%), Positives = 140/365 (38%), Gaps = 65/365 (17%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPG-DAFLVPSPYY 145
G E R A+A+F+ G F+ D + M GA + + L + D F+ +PY+
Sbjct: 77 GDVETRAAIAEFLNNTHG--THFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYF 134
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI--NIKGLIITNPSNP 203
+ + G ++V V D +F+I +ALE I + +G+II +P+NP
Sbjct: 135 PEY-KVFVNAAGARLVEVPADT-EHFQIDFDALEER--------INAHTRGVIINSPNNP 184
Query: 204 LGTTLDRDTLKSLVSFINDKN------IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR 257
GT +T+K L + K+ I ++ DE Y V+ K V +
Sbjct: 185 SGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKY-------Y 237
Query: 258 DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL---------VSSQTQYLL 308
D + YS SK + LPG R+G V D V + ++ S Q ++
Sbjct: 238 DNTLVCYSYSKSLSLPGERIGYVLV-PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMI 296
Query: 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL----L 364
++ + + +GL ++G +C K + + ++
Sbjct: 297 VKCQGATGDINAY--------KENRDLLYEGLTRIGYHCFKPDGAFYMFVKALEDDSNAF 348
Query: 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
EK E ++ + F C PGW R+ + D + ++ ++
Sbjct: 349 CEKAKEEDVL------------IVAADGFGC--PGWVRISYCV-DREMIKHSMPAFEKIY 393
Query: 425 QQDKE 429
++ +
Sbjct: 394 KKYNK 398
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 1e-42
Identities = 69/357 (19%), Positives = 139/357 (38%), Gaps = 50/357 (14%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI---MFCLANPGDAFLVPSP 143
GLPE R+A+ + K + G V PD + + E + L +PGD LVP P
Sbjct: 79 GLPELRKAIVERE-KRKNG-VDITPDDVRVT---AAVTEALQLIFGALLDPGDEILVPGP 133
Query: 144 YYAAFDRDLSWRTGVQI-----VPVHCDISNNFKITREALEAAYERAQEASI--NIKGLI 196
Y + V+ V +++ + + I K +
Sbjct: 134 SY------PPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKK--------ITDRTKAIA 179
Query: 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256
+ NP+NP G D+ TL+ +++ + I ++ DEIY + + S +
Sbjct: 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSL-----TK 233
Query: 257 RDLIHIIYSLSKDMGLPGFRVG-IVYSFNDTVVNCGRKM-----SSFGLVSSQTQYLLAS 310
+ ++ LSK G+R+G + + + ++ R+ ++ Q+ +
Sbjct: 234 DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIA 293
Query: 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTL 369
L+ ++L E K+L +R K L ++ GI+ K + + ++
Sbjct: 294 GLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK----IEVGPW 346
Query: 370 EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ + ++++ + GS F G FR F + L+ A++R F+++
Sbjct: 347 KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKE 402
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-42
Identities = 77/363 (21%), Positives = 139/363 (38%), Gaps = 34/363 (9%)
Query: 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLV 140
G+P R+A++ + V DP+ IV G G L++ + GD LV
Sbjct: 72 STSRGIPRLRRAISHWYRDRYD--VQIDPESEAIVTIGSKEGLAHLML-ATLDHGDTILV 128
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA-YERAQEASINIKGLIITN 199
P+P Y G Q+ V +F E + + +I+
Sbjct: 129 PNPSYPIHIYGAVI-AGAQVRSVPLVPGIDFFNELERAIRESIPKP-------RMMILGF 180
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
PSNP ++ D + +V+ ++ +V D YA V+ K S+ +V +D+
Sbjct: 181 PSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQV----PGAKDI 236
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYL----LASMLSDD 315
++LSK + G+R+G + N +V+ ++ S+ L +A++ D
Sbjct: 237 AVEFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSY-HDYGTFTPLQVAAIAALEGDQ 294
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIAL 375
+ V + +++ +R KGL + G A ++ W + E A
Sbjct: 295 QCVR----DIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLGSL-EFAK 349
Query: 376 WRTIVNDVKLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKESEKPT 434
++ D K++VSPG F + R + D L+ A+ I A + D
Sbjct: 350 K--LLQDAKVSVSPGIGFGDYGD-DHVRFALI-ENRDRLRQAVRGIKAMFRADGLLSPQR 405
Query: 435 KKR 437
K
Sbjct: 406 KVD 408
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-41
Identities = 69/356 (19%), Positives = 128/356 (35%), Gaps = 36/356 (10%)
Query: 80 AIFQDYH------GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLA 132
+ Q + G+ R+A+A+ + G D D I + GAT A + L
Sbjct: 55 HVAQGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITVTAGATEALYAAITALV 112
Query: 133 NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192
GD + P Y ++ ++ +G + + +F++ + A S
Sbjct: 113 RNGDEVICFDPSYDSYAPAIA-LSGGIVKRMALQ-PPHFRVDWQEFAALL------SERT 164
Query: 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252
+ +I+ P NP T + +L I I ++ DE+Y FS SV +
Sbjct: 165 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLA-HPQ 223
Query: 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLLAS 310
+ R+ + S K + G++VG + + RK+ + S T Q LA
Sbjct: 224 L---RERAVAVSSFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALAD 279
Query: 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLE 370
ML + + ++ L + + L F +D + +
Sbjct: 280 MLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV----STL 332
Query: 371 GEIALWRTIVNDVKLNVSPGSSFQCTEP---GWFRVCFANMDDDTLQVALNRIAAF 423
++ + + + + P S F C +P R+CFA + TL A R+
Sbjct: 333 DDVEFCQWLTQEHGVAAIPLSVF-CADPFPHKLIRLCFAK-KESTLLAAAERLRQL 386
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 2e-40
Identities = 77/369 (20%), Positives = 128/369 (34%), Gaps = 45/369 (12%)
Query: 80 AIFQDYH------GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLA 132
AI + G R+A+A + G V +DP+ +++ GAT A + L
Sbjct: 50 AIAGGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLVTVGATEAIAAAVLGLV 107
Query: 133 NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAY-ERAQEASI 190
PG L+ P+Y ++ ++ G V V F + +AL A R
Sbjct: 108 EPGSEVLLIEPFYDSYSPVVA-MAGAHRVTVPLVPDGRGFALDADALRRAVTPRT----- 161
Query: 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250
+ LII +P NP G L L ++ N+ ++ DE+Y VF + +A
Sbjct: 162 --RALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAG-F 218
Query: 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLL 308
M + I S +K G+++G ++ R + Q +
Sbjct: 219 DGM---AERTITISSAAKMFNCTGWKIGWACG-PAELIAGVRAAKQYLSYVGGAPFQPAV 274
Query: 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKT 368
A L + D ++ L R GL ++G S F D R L
Sbjct: 275 ALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPL----G 327
Query: 369 LEGEIALWRTIVNDVKLNVSPGSSF-----------QCTEPGWFRVCFANMDDDTLQVAL 417
+ + V + P S+F R F DDTL A+
Sbjct: 328 YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAI 386
Query: 418 NRIAAFVQQ 426
R++ ++
Sbjct: 387 RRLSVLAER 395
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 76/352 (21%), Positives = 135/352 (38%), Gaps = 41/352 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GLP RQ +A+ G+ G V DP R+V+ G++G L L + GD + +P Y
Sbjct: 69 GLPALRQRIARLYGEWYG--VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYP 126
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
++ R + G+ V + N + ++ GL++ +P+NP GT
Sbjct: 127 SY-RQILRALGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGT 176
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
LD + +L+ + + DEIY + + + E+ D ++I S
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALEL-------TDECYVINSF 228
Query: 267 SKDMGLPGFRVG--IVYSFNDTVVNCGRKMSS--FGLVSSQTQYL-LASMLSDDEFVDNF 321
SK + G+RVG +V + V +++ F +Q LA++ D E N
Sbjct: 229 SKYFSMTGWRVGWMVV---PEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANL 285
Query: 322 LVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380
+ L + G + + + D+ + A I+
Sbjct: 286 -----DVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSD-----LTDDSRAFAAEIL 335
Query: 381 NDVKLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKESE 431
+ V+PG F G R +A ++ L+R+ AF+Q E
Sbjct: 336 EKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQARGEGH 386
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 7e-39
Identities = 72/353 (20%), Positives = 131/353 (37%), Gaps = 41/353 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GLP R+A+A+ +P+ +V+ GAT A +++ L PGD +V P++
Sbjct: 62 GLPALREALAEEFA--------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFD 113
Query: 147 AFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ D G + V D++ F++ ALE A + + L++ P NP G
Sbjct: 114 VYLPDAF-LAGAKARLVRLDLTPEGFRLDLSALEKAL------TPRTRALLLNTPMNPTG 166
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
L+++ ++ L+ DE+Y + + + S
Sbjct: 167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA-------PERTFTVGS 219
Query: 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLLASMLSDDEFVDNFLV 323
K + G+RVG + + M + S+ T Q +A L + F
Sbjct: 220 AGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYE 277
Query: 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383
+ +R GL +G+ F +L A +V +
Sbjct: 278 ALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWD---------AFR--LVEEA 326
Query: 384 KLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIAAFVQQDKESEKPT 434
++ + P S+F +P FR F ++ L +AL R+ V +E+E
Sbjct: 327 RVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPREAEGGA 378
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 9e-39
Identities = 66/364 (18%), Positives = 129/364 (35%), Gaps = 43/364 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G P ++ K + + + GA + L N GD +V P++
Sbjct: 96 GRPSLINSLIKLYSPIYN--TELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFD 153
Query: 147 AFDRDLSWRTGVQIVPV----------HCDISNNFKITREALEAAY-ERAQEASINIKGL 195
+ ++ G ++V V + I E E A + K +
Sbjct: 154 QYIPNIE-LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKT-------KAV 205
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255
II P NP+G R+ L +L + N+ ++ DE+Y F + FT +A + E+
Sbjct: 206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYF-TDSFTRIATLSPEI-- 262
Query: 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLLASMLS 313
L + S K G+R+G V S N +++ K + +S + Q A+ +
Sbjct: 263 -GQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSI- 320
Query: 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL---------L 364
+D + + + + FT +++G+ F +D +
Sbjct: 321 NDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPE 380
Query: 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE-----PGWFRVCFANMDDDTLQVALNR 419
+ + + ++N++ + P + F E R DD L+ A+ R
Sbjct: 381 EILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENAVER 439
Query: 420 IAAF 423
+
Sbjct: 440 LKLL 443
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 50/356 (14%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+ E R+A A + + + V P+ +++ G + A +ANPGD LV P+YA
Sbjct: 80 GIWELREAFASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYA 137
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPSNPLG 205
++ + GV+++PV + F I + LE+ ER KG++++NP NP G
Sbjct: 138 NYN-AFAKIAGVKLIPVTRRMEEGFAIP-QNLESFINERT-------KGIVLSNPCNPTG 188
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
+D ++ LV + L+ DE+Y+ VF +F S + D + +I S
Sbjct: 189 VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSI------ESDKVVVIDS 241
Query: 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL-VSSQTQYL-LASMLSDDEFVDNFLV 323
+SK G RVG + + N+ +++ K++ L Q + + DD F D
Sbjct: 242 VSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRE 301
Query: 324 ETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRH---------LLKEKTLEGEI 373
+R K LE+ K + + +L +L + ++GE
Sbjct: 302 T----YRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGE- 356
Query: 374 ALWRTIVNDVKLNVSPGSSFQCTE---PGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
V+P F T R+ + D L A++ + ++
Sbjct: 357 ----------TTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAIDVLMEGLKM 401
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 71/365 (19%), Positives = 129/365 (35%), Gaps = 45/365 (12%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
G P QA++K + T +P +++ GA A + + GD ++ P++
Sbjct: 78 GHPRLVQALSKLYSQLVD--RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFF 135
Query: 146 AAFDRDLSWRTGVQIVPV--------HCDISNNFKITREALEAAYERAQEASINIKGLII 197
++ + G + S ++ + LEA + + K +II
Sbjct: 136 DCYEPMVK-AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF------NEKTKMIII 188
Query: 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR 257
P NPLG +DR L+ + + N+ V DE+Y VF + + + M
Sbjct: 189 NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICT-LPGM---W 244
Query: 258 DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLLASMLSDD 315
+ I S K L G+++G Y + ++ + + + + T Q +A +
Sbjct: 245 ERTITIGSAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETE 303
Query: 316 ----EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEG 371
+ + + S L + L +VG+N G F D L + L
Sbjct: 304 LKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQ 363
Query: 372 --------EIALWRTIVNDVKLNVSPGSSFQCTEP-----GWFRVCFANMDDDTLQVALN 418
W + V L P S+F + R CF D+ LQ A
Sbjct: 364 ETDARKDYRFTKW--MTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAE 420
Query: 419 RIAAF 423
+ +
Sbjct: 421 ILRKW 425
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-38
Identities = 69/369 (18%), Positives = 137/369 (37%), Gaps = 44/369 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
G P + +A F G+ G DP R +++ G GA L + GD ++ P++
Sbjct: 68 GYPPLTKILASFFGELLG--QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFF 125
Query: 146 AAFDRDLSWRTGVQIVPV----------HCDISNNFKITREALEAAYERAQEASINIKGL 195
++ G + V V S+N+++ L + + K L
Sbjct: 126 DCYEPMTM-MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF------TSRTKAL 178
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255
++ P+NPLG R+ L+ + S ++ + DE+Y V+ + S+A + M
Sbjct: 179 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIAS-LPGM-- 235
Query: 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--QYLLASMLS 313
+ I S K G++VG V D ++ R + + T Q +A
Sbjct: 236 -WERTLTIGSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFE 293
Query: 314 DDEFV----DNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF-------FWMDLRH 362
++ + ++ V+ + + + + + L+ VG+ + F F +
Sbjct: 294 REQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPD 353
Query: 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP-----GWFRVCFANMDDDTLQVAL 417
L + + ++ + L P S F + R CF D+ TLQ
Sbjct: 354 LPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMD 412
Query: 418 NRIAAFVQQ 426
++ + +
Sbjct: 413 EKLRKWKVE 421
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-38
Identities = 73/384 (19%), Positives = 131/384 (34%), Gaps = 49/384 (12%)
Query: 73 VEVFKDIAIFQDYH------GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANE 125
E A + + G P +A++ GK DP+ I++ GA G+
Sbjct: 42 KEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEILVAVGAYGSLF 99
Query: 126 LIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV---------HCDISNNFKITRE 176
+ L +PGD ++ P+Y ++ + G V + S+++
Sbjct: 100 NSIQGLVDPGDEVIIMVPFYDCYEPMVR-MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPR 158
Query: 177 ALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236
LE+ + S K +I+ P NPLG R L+ + + + DE+Y
Sbjct: 159 ELESKF------SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWL 212
Query: 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS 296
V++ +A + M + I S K + G+++G ++ + +
Sbjct: 213 VYTGHTHVKIAT-LPGM---WERTITIGSAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQ 267
Query: 297 FGLVSSQT--QYLLASMLSDD----EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS 350
+ T Q LA D + + + K L + + L VG+ +
Sbjct: 268 NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVP 327
Query: 351 NAGLFFWMDLRHL-----LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP------G 399
+ G F D+ L + + + KL P S+F C
Sbjct: 328 DGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAF-CDSKSKPHFEK 386
Query: 400 WFRVCFANMDDDTLQVALNRIAAF 423
R CF D TL A A+
Sbjct: 387 LVRFCFIK-KDSTLDAAEEIFRAW 409
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 67/349 (19%), Positives = 150/349 (42%), Gaps = 32/349 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
GL E R+A+A+ + K G + DP I++ GA A + + G+ L+P+P +
Sbjct: 64 GLLELREAIAEKLKKQNG--IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAF 121
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPSNPL 204
++ G + V V + F++ + L+ ++ + LII +P NP
Sbjct: 122 VSYA-PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT-------RALIINSPCNPT 173
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G L + L+ + F+ + ++ ++ DE+Y ++ + S+A + M + +
Sbjct: 174 GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIAS-LDGM---FERTITVN 229
Query: 265 SLSKDMGLPGFRVGIVYSF-NDTVVNCGRKMSSFGL--VSSQTQY-LLASMLSDDEFVDN 320
SK + G+R+G + ++ K + + QY ++ + +
Sbjct: 230 GFSKTFAMTGWRLG--FVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKA- 286
Query: 321 FLVETSKR-LAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379
VE ++ +R K L ++G+ +K + + +R + + +
Sbjct: 287 --VEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSK---KFSEL--M 339
Query: 380 VNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428
+ + ++ V PGS+F G+ R+ +A + L+ A++R+ +++ K
Sbjct: 340 LKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKERK 387
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 61/353 (17%), Positives = 120/353 (33%), Gaps = 36/353 (10%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
G R +A + G D D +++ G GA L + GD + P Y
Sbjct: 79 GDLGIRDLLAPRLAAFTG--APVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDY 136
Query: 146 AAFDRDLSWRTGVQIVPVHCDIS----NNFKITREALEAAY-ERAQEASINIKGLIITNP 200
A R L ++VPV D + LE A+ A + + +NP
Sbjct: 137 FAN-RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGA-------RVFLFSNP 188
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
+NP G + + + + ++ D++Y+ ++ +T + + +
Sbjct: 189 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD---AENV 245
Query: 261 HIIYSLSKDMGLPGFRVGIVYSF-NDTVVNCGRKMSSFGL--VSSQTQY-LLASMLSDDE 316
I SK L G+R+G +F + ++ K+ + + +Q L
Sbjct: 246 VTIMGPSKTESLSGYRLG--VAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPG 303
Query: 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIAL 375
++++ + L G+ AG + + L K
Sbjct: 304 WMEDRIAR----HQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP-----KLAVAPAEF 354
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428
+ + + V+PG+ F R+ F+ D + A RI V++ +
Sbjct: 355 VKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERYR 406
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 9e-38
Identities = 46/373 (12%), Positives = 96/373 (25%), Gaps = 52/373 (13%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMF----CLANPGDAFLVPS 142
GLPE +Q ++F + V G+ + N L
Sbjct: 83 GLPELKQEASRFAKLFVN--IDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFID 140
Query: 143 PYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
P + G + K+ + + +I +NP+N
Sbjct: 141 PGFNLNKLQCRI-LGQKFESFDLFEYRGEKLREKLESYLQ------TGQFCSIIYSNPNN 193
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF-----SSPKFTSVAEVIQEMDCNR 257
P + + L+ + ++ ++ D Y F + +
Sbjct: 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPS-VANY---T 249
Query: 258 DLIHIIYSLSKDMGLPGFRVG--------IVYSFNDTVVNCGRKMSSFGL---------- 299
D + S SK G R+G + D + GR L
Sbjct: 250 DNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSS 309
Query: 300 -VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-----AG 353
+ Q+ +A+ML + ++ ++ K G N +
Sbjct: 310 GATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLA 369
Query: 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTL 413
F+ + L V ++ ++ R+C + + +
Sbjct: 370 DGFYFTVG-----YKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEA-MRICTSLLPESQF 423
Query: 414 QVALNRIAAFVQQ 426
R+ +
Sbjct: 424 PDLEKRLQMLNAE 436
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-37
Identities = 74/359 (20%), Positives = 142/359 (39%), Gaps = 59/359 (16%)
Query: 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLV 140
+HG F+QA+ F + VT D + ++ G G + C+ NPGD L+
Sbjct: 82 GAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVCILYGTKNGLVAVPT-CVINPGDYVLL 138
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAA-YERAQEASINIKGLIITN 199
P P Y + + + VP++ + ++ +++ ++ K + +T
Sbjct: 139 PDPGYTDYLAGVLL-ADGKPVPLNLE-PPHYLPDWSKVDSQIIDKT-------KLIYLTY 189
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
P+NP G+T ++ ++ + +V D Y A F + K S+ + +D+
Sbjct: 190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILAS----ENGKDV 244
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ---TQY-LLASMLSDD 315
IYSLSK + GFRVG N ++ +K + + Q + ++ D
Sbjct: 245 AIEIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTH-TNAGMFGALQDAAIYALNHYD 302
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL----------RHLLK 365
+F++ E S R F L + + + + G++ W++ + L++
Sbjct: 303 DFLE----EQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQ 358
Query: 366 EKTLEGEIALWRTIVNDVKLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
EK + V+PG F + + R+ A +DD L A R+
Sbjct: 359 EK----------------SILVAPGKPFGENGN-RYVRISLA-LDDQKLDEAAIRLTEL 399
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 6e-37
Identities = 61/368 (16%), Positives = 120/368 (32%), Gaps = 52/368 (14%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGDAFLVPSPYY 145
G+ E R + M ++ D R ++ T L+ N D L+P +
Sbjct: 89 GIEELRDLWQQKM-LRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNW 147
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ + R G + + + T ++L A + + + +I+ P+NP G
Sbjct: 148 GNYKLVFNTRNGAN-LQTYPIFDKDGHYTTDSLVEALQSYNKDKV---IMILNYPNNPTG 203
Query: 206 TTLDRDTLKSLVSFI-----NDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
T + ++V I + V D+ Y + S+ + + N L
Sbjct: 204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILP 263
Query: 261 HIIYSLSKDMGLPGFRVG---IVYSFNDTVVNCGRKMSSF--GLVSS---QTQYLLASML 312
+ +K+ GFRVG S T K+ +SS TQ + +L
Sbjct: 264 IRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVL 323
Query: 313 SDDEFVDNFLVETSKRLAKRHHN----FTKGLEQVGINCLKSNAGLFFW--------MDL 360
+++ D + + + L +R+ N+G F L
Sbjct: 324 KNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPEAL 383
Query: 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420
R L + + I V ++ R+ F+ ++ D + + I
Sbjct: 384 RKHLID---KYSIG------------VIALNATD------IRIAFSCVEKDDIPHVFDSI 422
Query: 421 AAFVQQDK 428
A + +
Sbjct: 423 AKAIDDLR 430
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 9e-36
Identities = 59/358 (16%), Positives = 124/358 (34%), Gaps = 58/358 (16%)
Query: 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLV 140
F + A++ G V DP R + + G G L++ L P D L+
Sbjct: 60 CLKSCTLPFLEEAARWYEGRYG--VGLDPRREALALIGSQEGLAHLLL-ALTEPEDLLLL 116
Query: 141 PSPYYAAFDRDLSWRTGVQI---VPVHCDISNNFKITREALEAA-YERAQEASINIKGLI 196
P Y ++ ++ + + +A+ + A K L+
Sbjct: 117 PEVAYPSY------FGAARVASLRTFLIPLREDGLADLKAVPEGVWREA-------KVLL 163
Query: 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN 256
+ P+NP G D + + + L+ D Y V+ + S +
Sbjct: 164 LNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLAL----PGA 218
Query: 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYL----LASML 312
++ + ++SLSK L GFR+G ++ + ++ + +Q + + ++
Sbjct: 219 KERVVELFSLSKSYNLAGFRLGFALG-SEEALARLERVKGV-IDFNQYAGVLRMGVEALK 276
Query: 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK-----EK 367
+ E V ++ +R + L+ ++ L A ++ W L + +
Sbjct: 277 TPKEVVR----GYARVYRERALGMAEALKG-VLSLLPPRATMYLWGRLPEGVDDLEFGLR 331
Query: 368 TLEGEIALWRTIVNDVKLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
+E +A ++PG F + G+ R+ + L A RI +
Sbjct: 332 LVERGVA------------LAPGRGFGPGGK-GFVRIALV-RPLEELLEAAKRIREAL 375
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-34
Identities = 67/348 (19%), Positives = 135/348 (38%), Gaps = 37/348 (10%)
Query: 87 GLPEFRQAVA-KFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY- 144
G P R+A+A K R + + D I++ G + +M + PGD ++P+P+
Sbjct: 68 GEPRLREAIAQKL---QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFW 124
Query: 145 --YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPS 201
Y ++ V + + FK++ E + A + K L+ PS
Sbjct: 125 VSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT-------KLLVFNTPS 173
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G D ++++ + + ++ DEIY ++ + S+ E +
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEA---YERSV 230
Query: 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQY-LLASMLSDDEFVD 319
+ +K + G+RVG + V + S V + QY +A+ + + V
Sbjct: 231 VCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQ 290
Query: 320 NFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378
L A+R L + G+ C K + + + + KT +
Sbjct: 291 EMLAA----FAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA-----KTGRSSLDFCSE 341
Query: 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+++ ++ PG++F R+ +A D DT++ + R+ F+
Sbjct: 342 LLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHG 386
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 87/344 (25%), Positives = 159/344 (46%), Gaps = 40/344 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+ E R+ +AK +G+ PD++V+ GA A L +PGD +V SP +
Sbjct: 79 GIYELREGIAKRIGERYK--KDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV 136
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
++ G + V +S NF+ + E +E K ++I +P+NP G
Sbjct: 137 SYI-PQIILAGGTVNVVETFMSKNFQPSLEEVEGLL------VGKTKAVLINSPNNPTGV 189
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
R+ L+ LV +N +++ DE+Y + V+ + +FTS+ +V E D I I
Sbjct: 190 VYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-TDEFTSILDV-SEG---FDRIVYINGF 244
Query: 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--VSSQTQY-LLASMLSDDEF-VDNFL 322
SK + G+RVG + S ++ V K+ S +++ QY L ++ D+ + V F
Sbjct: 245 SKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTF- 302
Query: 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF-FWMDLRHLLKEKTLEGEIALWRTIVN 381
+R + + L+++G+ ++ G F + +R ++ ++
Sbjct: 303 -------KERKNFVVERLKKMGVKFVEPE-GAFYLFFKVR--------GDDVKFCERLLE 346
Query: 382 DVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425
+ K+ + PGS+F PG+ R+ FA + L AL+RI F+
Sbjct: 347 EKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLN 387
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 72/345 (20%), Positives = 137/345 (39%), Gaps = 34/345 (9%)
Query: 87 GLPEFRQAVA-KFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY- 144
G+PE R+A+A KF R ++ P+ ++ G + A + + +PGD +V SPY
Sbjct: 69 GIPELREALAEKFR---RENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYW 125
Query: 145 --YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
Y ++ G +V V F E + A + K L++ +P+N
Sbjct: 126 VSYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRAI------TPRTKALVVNSPNN 175
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G ++ L++L + + +LV DEIY ++ + S V E L
Sbjct: 176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY-EGEHFSPGRVAPE----HTL--T 228
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNF 321
+ +K + G+R+G + + S + Q+ L++ E F
Sbjct: 229 VNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAF 288
Query: 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381
+ + +R +GL +G+ ++ + + MD + + L
Sbjct: 289 VEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAP-DEVRAAERL-----L 342
Query: 382 DVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ + V PG+ F G R+ +A ++ L+ AL R A + +
Sbjct: 343 EAGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVLGR 384
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-32
Identities = 68/412 (16%), Positives = 133/412 (32%), Gaps = 78/412 (18%)
Query: 87 GLPEFRQA-VAKFMGKGRGGRVTFD-PDRIVMGGGATGA-----NELIMFCLANPGDAFL 139
+ + V +++ + G + G T A L + L GD
Sbjct: 139 RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVA 198
Query: 140 VPSPYYAAFDRDLSWRTG-VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
+ P + + ++ V ++ D S N++ L+ IK
Sbjct: 199 IGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKL------KDPAIKIFFCV 252
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHL--VCDEIYAATVFSSPKFTSVAEVIQEMDCN 256
NPSNP +D+ +L+ + + + + L + D++Y F S+ + E
Sbjct: 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD---DFQSLFAICPE---- 305
Query: 257 RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG-RKMSSFGLVSSQTQYLLASMLSDD 315
L ++YS SK G G+R+G+V + V + K+ V+ +Y
Sbjct: 306 NTL--LVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRS 363
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV-------------------------------- 343
+ LV S+ +A H +QV
Sbjct: 364 LKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTL 423
Query: 344 ----GINCLKS-NAGLFF-WMDLRHLLKEKTLEGEIALWRTIVNDVKL--------NVS- 388
G+ L+ NA ++ +DL+ + + E + + +
Sbjct: 424 YRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVL 483
Query: 389 -PGSSFQCTEPGWFRVCFANMDDD---TLQVALNRIAAFVQQDKESEKPTKK 436
PG F R AN+++ + AL ++A + + + K
Sbjct: 484 LPGRGFGSNR-PSGRASLANLNEYEYAAIGRALRKMADELYAEYSGQAQNLK 534
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 72/349 (20%), Positives = 139/349 (39%), Gaps = 54/349 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G+ E R+ +++ PD I++ GG++ + + + GD L+ +P Y
Sbjct: 67 GILELREKISELYKDKYK--ADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYP 124
Query: 147 AFDRDLSWRTGVQI---VPVHCDISNNFKITREALEAAY-ERAQEASINIKGLIITNPSN 202
++ ++ PV CD T E+LE A ++ K +II +PSN
Sbjct: 125 ------CYKNFIRFLGAKPVFCD------FTVESLEEALSDKT-------KAIIINSPSN 165
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
PLG +DR+ + F + +++ DEIY V+ K S E E + +
Sbjct: 166 PLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIE-FDEN---LEKTIL 216
Query: 263 IYSLSKDMGLPGFRVGIVYSF-NDTVVNCGRKMSSFGL--VSSQTQY--LLASMLSDDEF 317
I SK + G+R+G Y ND ++ K+ + +QY L A +
Sbjct: 217 INGFSKLYAMTGWRIG--YVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETERE 274
Query: 318 VDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWR 377
+++ + E +R K ++ G + + ++ E
Sbjct: 275 INSMIKE----FDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIG--------EDGREFAY 322
Query: 378 TIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
++ + + ++PG F + R+ +AN + ++ L RI F+ +
Sbjct: 323 KLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLNK 370
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 53/368 (14%), Positives = 106/368 (28%), Gaps = 66/368 (17%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--------NPGDAF 138
E + + + G IV G G T ++ L+ P
Sbjct: 101 ISFELEKTIKELHE--VVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKV 158
Query: 139 LVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
+ +P+Y F + + Q ++T
Sbjct: 159 VAHAPFYPVF---------REQTKYFDKKGYVWAGNAANYVNVSNPEQ------YIEMVT 203
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258
+P+NP G L+ V K + D +Y P +T + D
Sbjct: 204 SPNNPEGL------LRHAV----IKGCKSIYDMVYYW-----PHYTPIKYK-------AD 241
Query: 259 LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--VSSQTQY--------LL 308
+++++SK G G R G +++V N + +TQ ++
Sbjct: 242 EDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVV 301
Query: 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE-- 366
A + + + + K+L +R N T L+Q + + R +
Sbjct: 302 AMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSP 361
Query: 367 -----KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
K E + ++N G F+ + R+ D + +
Sbjct: 362 SYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLK 419
Query: 422 AFVQQDKE 429
V+ ++
Sbjct: 420 DMVKAKRK 427
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 64/393 (16%), Positives = 117/393 (29%), Gaps = 80/393 (20%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-------------- 132
G F A+ F + + I + G+ A +
Sbjct: 84 GDSAFIDALVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESK 141
Query: 133 -NPGDAFLVPSPYY----AAFDRDLSWRTGV-QIVPVHCDISNN---FKITREALEAAYE 183
L +P Y + + I V D +++ EALE
Sbjct: 142 SVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA 201
Query: 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243
+ I + + P+NP G L + + L +I L+ D Y + +
Sbjct: 202 LKEGR---IGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFP-NIIY 257
Query: 244 TSVAEVIQEMDCNRDLIHIIY--SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF---- 297
+ + I SLSK +GLPG R GI+ + + V+ +S+
Sbjct: 258 SDAHLNWDN--------NTILCFSLSK-IGLPGMRTGIIVA-DAKVI---EAVSAMNAVV 304
Query: 298 GL-VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VGINCLKSNA 352
L + + ++++D E K+ K L+Q + K
Sbjct: 305 NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEG 364
Query: 353 GLFFWMDLRHL------LKEKTLEGEIALWRTIVNDVKLNVSPGSSF--------QCTEP 398
+F W+ + L L E+ + P F
Sbjct: 365 AIFLWLWFKDLPISTLDLYERLKAKGTL------------IVPSEYFFPGVDVSDYQHAH 412
Query: 399 GWFRVCFANMDDDTLQVALNRIAAFVQQDKESE 431
R+ A D+ TL + I V++ +++
Sbjct: 413 ECIRMSIA-ADEQTLIDGIKVIGEVVRELYDNK 444
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-30
Identities = 60/375 (16%), Positives = 116/375 (30%), Gaps = 73/375 (19%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAF------LV 140
G A+A + + G +P I + G+ A + A
Sbjct: 76 GKTALLNALAVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFP 133
Query: 141 PSPYY-----AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195
+P Y + + DL I + FK + +
Sbjct: 134 LAPEYIGYADSGLEDDLFVSARPNIELLPEG---QFKYHVDFEHLHIGE------ETGMI 184
Query: 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255
++ P+NP G + + L L N NI LV D Y F F+ +
Sbjct: 185 CVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAY-GVPFPGIIFSEARPLWNP--- 240
Query: 256 NRDLIHIIY--SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV-----SSQTQYLL 308
+II SLSK +GLPG R GI+ + ND + +++ + ++
Sbjct: 241 -----NIILCMSLSK-LGLPGSRCGIIIA-NDKTI---TAIANMNGIISLAPGGMGPAMM 290
Query: 309 ASMLSD---DEFVDNFLVET-SKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH-- 362
M+ + + +R+ + + L + K +F W+ +
Sbjct: 291 CEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLP 350
Query: 363 ----LLKEKTLEGEIALWRTIVNDVKLNVSPGSSF-------QCTEPGWFRVCFANMDDD 411
LL ++ + + PG F R+ + + D
Sbjct: 351 ITTELLYQRLKARGVL------------MVPGHYFFPGLDKPWPHTHQCMRMNYVP-EPD 397
Query: 412 TLQVALNRIAAFVQQ 426
++ + +A +++
Sbjct: 398 KIEAGVKILAEEIER 412
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 76/359 (21%), Positives = 134/359 (37%), Gaps = 50/359 (13%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP-YY 145
G+PE R+ +A F+ K + P+ IV+ G TGA +L+ L +PGD + +P Y
Sbjct: 76 GIPELREELAAFLKKYDH--LEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYI 133
Query: 146 AAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS--N 202
++ G +I V D N + + LE + + +K LI T P+ N
Sbjct: 134 NTLL---AFEQLGAKIEGVPVD---NDGMRVDLLEEKIKELKAKGQKVK-LIYTIPTGQN 186
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P+G T+ + K+L+ + ++ ++ D Y + ++ +D +
Sbjct: 187 PMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVP----LKALDNEG---RV 239
Query: 263 IY--SLSKDMGLPGFRVGIVY---SFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEF 317
I +LSK +G GFR+G + V+ K + +QY+ L F
Sbjct: 240 IVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQ--KQPIDFCAPAISQYIALEYLKRGYF 296
Query: 318 VDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKSNAGLFFWMDL------RHLLKEKTL 369
L ++ K LE K AG+F L E
Sbjct: 297 EKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELME 356
Query: 370 EGEIALWRTIVNDVKLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ V PG F E G R+ F+ + + + + ++A ++
Sbjct: 357 REGVV------------VVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE 403
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 54/353 (15%), Positives = 107/353 (30%), Gaps = 49/353 (13%)
Query: 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-----MFCLANPGDAFL 139
R A F + + + ++ G+ E++
Sbjct: 58 SAFEESLRAAQRGFFKRRFK--IELKENELIS---TLGSREVLFNFPSFVLFDYQNPTIA 112
Query: 140 VPSPYYAAFDRD--LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197
P+P+Y ++ + + + N+F E + L+I
Sbjct: 113 YPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP--SLNEKELQEVD--------LVI 159
Query: 198 TN-PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM-DC 255
N P+NP G TL + L S V + L+ DE Y+ ++ + S+ E +
Sbjct: 160 LNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTPPPSLLEACMLAGNE 218
Query: 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--LVSSQTQYLLASMLS 313
+ +I+SLSK PG R G + + ++ + ++ ++ Q +
Sbjct: 219 AFKNVLVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWL 277
Query: 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEI 373
DD + A K + + ++ GE
Sbjct: 278 DDRHAE----FFRNIYANNLKLARKIFKNTL----IYPYSFYVYL--------PVQNGE- 320
Query: 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAFVQ 425
+T+ + + P G V A D L+ L I + +
Sbjct: 321 NFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 3e-28
Identities = 76/377 (20%), Positives = 135/377 (35%), Gaps = 81/377 (21%)
Query: 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT-GANELI---MFCLANP-----G 135
GLPE RQA A ++ + R +T D D ++ G+ E + + + NP
Sbjct: 65 TAGLPELRQACANWLKR-RYDGLTVDADNEIL---PVLGSREALFSFVQTVLNPVSDGIK 120
Query: 136 DAFLVPSPYY------AAFDRDLSWRTGVQIVPVHCDISNNFKITREAL-EAAYERAQEA 188
A + P+P+Y G +I +C + +F ++ E ++R
Sbjct: 121 PAIVSPNPFYQIYEGATLL-------GGGEIHFANCP-APSFNPDWRSISEEVWKRT--- 169
Query: 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248
K + + +P+NP G+ LD D K + + + DE Y+ F K +
Sbjct: 170 ----KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQ 225
Query: 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQ--- 303
++ +R + + SLSK +PG R G V G + +F L +
Sbjct: 226 AAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFV---------AGDAELLKNFLLYRTYHGS 276
Query: 304 -----TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWM 358
Q + D++ V ++ + ++ L+QV + +A + W+
Sbjct: 277 AMSIPVQRASIAAWDDEQHV----IDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWL 331
Query: 359 DLRHLLKEKTLEGE-----IALWRTIVNDVKLNVSPGSSFQCT----EPGWFRVCFA-NM 408
K +G+ LW+ + V PG PG V A
Sbjct: 332 --------KVPDGDDLAFARNLWQ----KAAIQVLPGRFLARDTEQGNPGEGYVRIALVA 379
Query: 409 DDDTLQVALNRIAAFVQ 425
D T A I + +
Sbjct: 380 DVATCVKAAEDIVSLYR 396
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 60/352 (17%), Positives = 123/352 (34%), Gaps = 69/352 (19%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-MFCLANPGDAFLVPSPYYAA 147
QA+A+ I+ G G E I ++ +P +A
Sbjct: 62 FHLHQALARHHQ--------VPASWILAGNGE---TESIFTVASGLKPRRAMIVTPGFAE 110
Query: 148 FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT 207
+ R L+ ++G +I ++ +++T LEA L + P+NP G
Sbjct: 111 YGRALA-QSGCEIRRWSLREADGWQLTDAILEALTPDL-------DCLFLCTPNNPTGLL 162
Query: 208 LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
+R L+++ NI+L+ DE + + P T +++ + + ++ SL+
Sbjct: 163 PERPLLQAIADRCKSLNINLILDEAFIDFI---PHETGFIPALKDNP-H--IW-VLRSLT 215
Query: 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL---VSSQTQYLLASMLSDDEFVDNFLVE 324
K +PG R+G + + +D + +M + V++ L D +
Sbjct: 216 KFYAIPGLRLGYLVNSDDAAM---ARMRRQQMPWSVNALAALAGEVALQDSAWQQ----A 268
Query: 325 TSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDL--------RHLLKEKTLEGEIAL 375
T L + F + L Q+ + A + + R LL ++ L
Sbjct: 269 TWHWLREEGARFYQALCQLPLLTVYPGRAN-YLLLRCEREDIDLQRRLLTQRIL------ 321
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD-----DTLQVALNRIAA 422
+ +++ + ++RV + L+ L IA
Sbjct: 322 -----------IRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNVLTGIAP 362
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 66/354 (18%), Positives = 117/354 (33%), Gaps = 49/354 (13%)
Query: 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIM--FCLANPGDAFLV 140
GLP RQ +++ +G D I + + GA + P +
Sbjct: 72 GPDFGLPALRQKLSEDFYRGF-----VDAKEIFI---SDGAKVDLFRLLSFFGPNQTVAI 123
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
P Y A+ +I+ + C N F L + +P
Sbjct: 124 QDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTHI-----------DILCLCSP 172
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
+NP GT L++D L+++V + + I ++ D Y+ + S+ E+ C
Sbjct: 173 NNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCA---- 228
Query: 261 HI-IYSLSKDMGLPGFRVG-------IVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLAS 310
I I S SK +G G R+G + Y+ V+ + S F S Q +
Sbjct: 229 -IEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVA 287
Query: 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLE 370
LS +E + K L G + W+ +
Sbjct: 288 GLSILP-----QLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPT-----QANI 337
Query: 371 GEIALWRTIVNDVKLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
+ L+ + + + ++PG F + G+ R +D L A R+
Sbjct: 338 SDRDLFDFFLREYHIAITPGIGFGRSGS-GFVRFSSLGKREDILA-ACERLQMA 389
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 63/411 (15%), Positives = 117/411 (28%), Gaps = 89/411 (21%)
Query: 63 PYASICTAEGVEVFKDIAIFQDYH------GLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116
P + T+ + +++ + Y G R A+AK G G D + +
Sbjct: 69 PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLG----IGDDDVFV 124
Query: 117 GGGA---TGANELIMFCLANPGDAFLVPSPYY-----------AAFDRDLSWRTGVQIVP 162
GA + + V P Y + + I
Sbjct: 125 SDGAKCDISR----LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY 180
Query: 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222
+ C N F + + +P+NP G R+ L LV F
Sbjct: 181 MRCTPENGFFPDLSTVGRT-----------DIIFFCSPNNPTGAAATREQLTQLVEFAKK 229
Query: 223 KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI-IYSLSKDMGLPGFRVG--- 278
+V D YA + S+ E+ + + S S G G R+G
Sbjct: 230 NGSIIVYDSAYAMYMS-DDNPRSIFEIPGAEEVA-----METASFSNYAGFTGVRLGWTV 283
Query: 279 ----IVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDD--EFVDNFLVETSKRLA 330
++YS V ++ F S+ +Q + L+ + E + +
Sbjct: 284 IPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMH----KVIGFYK 339
Query: 331 KRHHNFTKGLEQVGINCLKSNAGLFFWMDL---------RHLLKEKTLEGEIALWRTIVN 381
+ + +G + + W+ +L++ +
Sbjct: 340 ENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKT----HVV------- 388
Query: 382 DVKLNVSPGSSF-QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKESE 431
+PGS F E G+ RV ++ L+ A R +
Sbjct: 389 -----TTPGSGFGPGGE-GFVRVSAFGHRENILE-ACRRFKQLYKHHHHHH 432
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 79/358 (22%), Positives = 145/358 (40%), Gaps = 42/358 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP-YY 145
G R+ + K++GK R G + I++ G+ A +LI NPGD +V +P Y
Sbjct: 119 GFTPLRETLMKWLGK-RYGISQ--DNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYL 175
Query: 146 AAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS--N 202
AA ++ Q + + D + + E LE + + +K ++ T P+ N
Sbjct: 176 AALQ---AFNFYEPQYIQIPLD---DEGMKVEILEEKLKELKSQGKKVK-VVYTVPTFQN 228
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G T++ D K L+ ++ + +V D+ Y +S I+ +D +
Sbjct: 229 PAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKK----IKALDNEG---RV 281
Query: 263 IY--SLSKDMGLPGFRVGIVY---SFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEF 317
IY + SK + PGFR+G + + K S+ + Q + +
Sbjct: 282 IYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIA--KQSTDLCTNVFGQVVAWRYVDGGYL 338
Query: 318 VDNFLVETSKRLAKRHHNFTKGLEQ---VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374
+ + E K R + LE+ G+ K G+F W+ L + K +
Sbjct: 339 -EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKM----- 392
Query: 375 LWRTIVNDVKLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIAAFVQQDKES 430
L R I V PG +F R+ F +D+D + + R+A ++++ ++
Sbjct: 393 LERAIKKGVAYV--PGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELKA 448
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 62/381 (16%), Positives = 111/381 (29%), Gaps = 74/381 (19%)
Query: 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS 142
G R+AVA G D I G A + + V
Sbjct: 108 GAEQGQGALREAVASTFYGHAG--RAADEIFISDGSKCDIAR---IQMMFGSKPTVAVQD 162
Query: 143 PYY-----------AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191
P Y D + + G++ + C+ N+F +
Sbjct: 163 PSYPVYVDTSVMMGMTGDHNGTGFDGIEYMV--CNPDNHFFPDLSKAKRT---------- 210
Query: 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251
+ +P+NP G R L LV+F LV D YA + + ++ E+
Sbjct: 211 -DIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG 269
Query: 252 EMDCNRDLIHI-IYSLSKDMGLPGFRVG-------IVYSFNDTVVNCGRKMSS--FGLVS 301
+ I S SK G G R+G + Y+ + V ++ + F S
Sbjct: 270 ADEVA-----IETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGAS 324
Query: 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL- 360
+ Q + L + + K + ++G + + + W+
Sbjct: 325 NIVQAGGLACLQPEG--LKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFP 382
Query: 361 --------RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF-QCTEPGWFRVCFANMDDD 411
+L+ I +PGS + E G+ R ++
Sbjct: 383 GKPSWDVFAEILERC----NIV------------TTPGSGYGPAGE-GFVRASAFGSREN 425
Query: 412 TLQVALNRIAAFVQQDKESEK 432
L+ A+ R + S
Sbjct: 426 ILE-AVRRFKEAYGKRNASHH 445
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-26
Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 26/278 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGA-----NELIMFCLANPGDAFLV 140
L + + F+ + + G T A + L L GD +
Sbjct: 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAI 198
Query: 141 PSPYYAAFDR--DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
P + + R +L V V +H N+++I +E +IK LI+
Sbjct: 199 NEPIFTPYLRIPELKDYELV-EVDLHSYEKNDWEIEPNEIEKL------KDPSIKALIVV 251
Query: 199 NPSNPLGTTLDRDTLKSLVSFIND-KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR 257
NP+NP D + L ++ + + ++ DE+Y A V F S+ V+
Sbjct: 252 NPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSVVPY----N 304
Query: 258 DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG-RKMSSFGLVSSQTQYLLASMLSDDE 316
+ ++YS SK G G+R+G++ V + + L +Y + D
Sbjct: 305 TM--LVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKM 362
Query: 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354
+ L S+ + H +Q+ L
Sbjct: 363 KFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 68/357 (19%), Positives = 123/357 (34%), Gaps = 42/357 (11%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP-YY 145
G P +Q + K + + G D D ++ G+ A +LI + ++ P Y
Sbjct: 86 GDPVLKQQILKLLER-MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYL 144
Query: 146 AAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG-LIITNPS-- 201
A + ++R V V + + + LE + + I +
Sbjct: 145 GAIN---AFRQYLANFVVVPLE---DDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFH 198
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G T + K+LV ++ +V D+ Y A + I ++
Sbjct: 199 NPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDP----IFKIGGPE---R 251
Query: 262 IIY--SLSKDMGLPGFRVGIVY---SFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDE 316
++ + SK + PG R+G+V F +V K S+ + T L A L +
Sbjct: 252 VVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQA--KQSADLCSPAITHRLAARYLERYD 308
Query: 317 FVDNFLVETSKRLAKRHHNFTKGLEQ-----VGINCLKSNAGLFFWMDLRHLLKEKTLEG 371
L T + ++ LE+ G+ +KS GLF W+ L +
Sbjct: 309 L-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEM-- 365
Query: 372 EIALWRTIVNDVKLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIAAFVQQ 426
V PG F+ + R+ F D+ + + R+ V +
Sbjct: 366 ---FEYAKRKKVFYV--PGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE 417
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 59/363 (16%), Positives = 120/363 (33%), Gaps = 72/363 (19%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGD----AFLVPSPY 144
PE A+ G G + IV+G G+T + + L++ + + +P+
Sbjct: 71 PELEDAIKDL--HGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPF 128
Query: 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
Y+ + V S +K +A + ++T+P+NP
Sbjct: 129 YSTY------VEETTYVR-----SGMYKWEGDAWGFDKKGP-------YIELVTSPNNPD 170
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
GT + ++V+ +D ++ D Y P +T + + D+ +++
Sbjct: 171 GTIRE-----TVVNRPDDDEAKVIHDFAYYW-----PHYTPITR-----RQDHDI--MLF 213
Query: 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRK---MSSFGLVSSQTQYLLASMLS-------D 314
+ SK G G R+G + V + ++S G VS ++Q A +L+
Sbjct: 214 TFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIG-VSKESQVRTAKILNVLKETCKS 272
Query: 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS--NAGLFFWMDLRHLLKEKTLEGE 372
+ +NF + + R + +++ L A + +
Sbjct: 273 ESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNY-------FGKSLESYP 325
Query: 373 IALWRTIVNDVKLN---------VSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
W + L G ++ RV + +D V L R+A
Sbjct: 326 AFAWLGTKEETDLVSELRRHKVMSRAGERCG-SDKKHVRVSMLS-REDVFNVFLERLANM 383
Query: 424 VQQ 426
Sbjct: 384 KLI 386
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 67/354 (18%), Positives = 126/354 (35%), Gaps = 50/354 (14%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP-YY 145
G R VA+++G P+ +++ G+ A +L+ + G L+ +P Y
Sbjct: 75 GYAPLRAFVAEWIGV--------RPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM 126
Query: 146 AAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS--N 202
A ++R G + + V +ALE +R + + PS N
Sbjct: 127 GAIQ---AFRLQGPRFLTVPAG---EEGPDLDALEEVLKRE-----RPR-FLYLIPSFQN 174
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
P G K L+ + ++ + +V D+ Y F + S + E+ +
Sbjct: 175 PTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPS----LFELAREAGYPGV 230
Query: 263 IY--SLSKDMGLPGFRVGIVY---SFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEF 317
IY S SK + PG RV +V K + Q L+ +L +
Sbjct: 231 IYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQA--KQGADLHTPMLNQMLVHELLKEG-- 285
Query: 318 VDNFLVETSKRLAKRHHNFTKGLEQ---VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374
L + ++ L++ + + G+F WM+L L + L
Sbjct: 286 FSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGL----- 340
Query: 375 LWRTIVNDVKLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIAAFVQQ 426
R + +V PG F G R+ +A +D + + + R+ ++
Sbjct: 341 FRRALEENVAFV--PGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKG 392
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 58/325 (17%), Positives = 124/325 (38%), Gaps = 57/325 (17%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
+++ ++ IV+G GA+E+I + + L+ P YA +
Sbjct: 64 RRLNKSIENYLK--------LKDIGIVLG---NGASEII-ELSISLFEKILIIVPSYAEY 111
Query: 149 DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208
+ + + GV +V + D N I E + + + ++ +II NP+NP G +
Sbjct: 112 EINAK-KHGVSVVFSYLD--ENMCIDYEDIISKID-------DVDSVIIGNPNNPNGGLI 161
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268
+++ ++ +K ++ DE + F+ +S I+ C L II +++K
Sbjct: 162 NKEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGEIKNYSC---LF-IIRAMTK 215
Query: 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL---VSSQTQYLLASMLSDDEFVDNFLVET 325
+PG R G + N + K+ + ++ + + L D +++ E+
Sbjct: 216 FFAMPGIRFGYGITNNKEIAA---KIKAKQNPWNINCFAEMAAINCLKDTNYIE----ES 268
Query: 326 SKRLAKRHHNFTKGLEQVGI--NCLKSNAGLFFWMDLRHL----LKEKTLEGEIALWRTI 379
+ K F + L ++G +A F L ++ L + L+ I
Sbjct: 269 LLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENISGEKLYDSLLK------EDI 321
Query: 380 VNDVKLNVSPGSSFQCTEPGWFRVC 404
V + +F + + R
Sbjct: 322 V------IRRCCNFIGLDDSFVRFA 340
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 61/373 (16%), Positives = 125/373 (33%), Gaps = 61/373 (16%)
Query: 87 GLPEFRQAVAKFMGK-----GRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP 141
G+PE + + K + + + G+ + + NPGD L+
Sbjct: 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLD 138
Query: 142 SP-YYAAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG----- 194
P Y S G I+ V D I ++L R +
Sbjct: 139 EPAYSGTLQ---SLHPLGCNIINVASD---ESGIVPDSLRDILSRWKPEDAKNPQKNTPK 192
Query: 195 LIITNPS--NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252
+ T P+ NP G +L + K + + ++ D+ Y F+ + +
Sbjct: 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPT----FLS 248
Query: 253 MDCNRDLIHIIY--SLSKDMGLPGFRVGIVY---SFNDTVVNCGRKMSSFGLVSSQTQYL 307
MD + +I S SK + G R+G + + V+ S S+ Q +
Sbjct: 249 MDVDG---RVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILH--IQVSTLHPSTFNQLM 302
Query: 308 LASMLS--DDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLKSNAGLFFW----- 357
++ +L +E + + + ++ AG+F W
Sbjct: 303 ISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG 362
Query: 358 -MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG---WFRVCFANMDDDTL 413
D++ L++EK ++ + + PG++F + R F++ + +
Sbjct: 363 INDVKELIEEKAVKMGVL------------MLPGNAFYVDSSAPSPYLRASFSSASPEQM 410
Query: 414 QVALNRIAAFVQQ 426
VA +A +++
Sbjct: 411 DVAFQVLAQLIKE 423
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 9e-22
Identities = 51/320 (15%), Positives = 115/320 (35%), Gaps = 57/320 (17%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-MFCLANPGDAFLVPSPYYAAF 148
RQ +AK D + I++ G T A G L+ P +A +
Sbjct: 54 TLRQMLAKRNS--------VDNNAILVTNGPT---AAFYQIAQAFRGSRSLIAIPSFAEY 102
Query: 149 DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208
+ ++ + N+ + NP+NP G L
Sbjct: 103 EDACR-MYEHEVCFYPSNEDIGEADFS---------------NMDFCWLCNPNNPDGRLL 146
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268
R + L++ + + V D+ Y + F++ + A++ ++L+ ++YS S
Sbjct: 147 QRTEILRLLN--DHPDTTFVLDQSYVS--FTTEEVIRPADIKG----RKNLV-MVYSFSH 197
Query: 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL---VSSQTQYLLASMLSDDEFVDNFLVET 325
G+PG R+G + + D + +++++F V++ +L
Sbjct: 198 AYGIPGLRIGYIVANKDFM----KRVAAFSTPWAVNALAIEAAKFILIHPAQFT----LP 249
Query: 326 SKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVK 384
++ + +F L ++ G+ S FF + L+ + + + + ++ D
Sbjct: 250 IRKWQRNTVDFITALNRLDGVEVHPSGTT-FFLLRLKKGTAAELKKYMLEEYNMLIRDA- 307
Query: 385 LNVSPGSSFQCTEPGWFRVC 404
S+F+ + + R+
Sbjct: 308 ------SNFRGLDESYVRIT 321
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 61/399 (15%), Positives = 124/399 (31%), Gaps = 67/399 (16%)
Query: 62 NPYASICTAEGVEVFKDIAIFQDY---HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118
+ ++ + + Y G+ + RQ A +G ++++ G
Sbjct: 52 DELLALPGKGDFKAADGTDVRN-YGGLDGIVDIRQIWADLLGV--------PVEQVLAGD 102
Query: 119 GA--------------TGANELIMFCLANPGDAFLVPSP-YYAAFDRDLSWRT-GVQIVP 162
+ G N+ + ++ P P Y F G +++
Sbjct: 103 ASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS---ITERFGFEMIS 159
Query: 163 VHCDISNNFKITREALEAAYERAQEASINIKGL-IITNPSNPLGTTLDRDTLKSLVSFIN 221
V + +A+E + +KG+ ++ SNP G T+ D K L +
Sbjct: 160 VPMN---EDGPDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMET 211
Query: 222 D-KNIHLVCDEIYAATVFS--SPKFTSVAEVIQEMDCNRDLIHIIY--SLSKDMGLPGFR 276
+ +V D YA + P+ + + + N + S SK + L G
Sbjct: 212 AAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAG-NPN--RFWAFTSTSK-ITLAGAG 267
Query: 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQ-TQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335
V + + G+ ++ Q A D E V + + + LA + +
Sbjct: 268 VSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNK 327
Query: 336 FTKGLEQ-----VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPG 390
+ L+ G F +D+ + E + L
Sbjct: 328 VLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAE------LAKEAGIALT--GA 379
Query: 391 SSF--QCTEPGW--FRVCFANMDDDTLQVALNRIAAFVQ 425
S +P R+ + + L+VA++ +A V
Sbjct: 380 GSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVL 418
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 60/429 (13%), Positives = 131/429 (30%), Gaps = 59/429 (13%)
Query: 28 RNPFHPTQNPGGVIQL--GL-AENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD 84
R + + G + + G A+ FDL +T A +G+++
Sbjct: 15 RQAYEAFKARGLNLNMQRGQPADAD--FDLSNGLLTV-LGAEDVRMDGLDLR------N- 64
Query: 85 YH----GLPEFRQAVAKFMGKG-----RGGRVTFDPDRIVMGGGATGANELIMFCLANPG 135
Y GLP R A ++ + + +V+ +
Sbjct: 65 YPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQT 124
Query: 136 DAFLVPSP-YYAAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193
+V P Y F +T G +++ V + +A+ ER ++K
Sbjct: 125 PKMIVTVPGYDRHFL---LLQTLGFELLTVDMQ---SDGPDVDAV----ERLAGTDPSVK 174
Query: 194 GL-IITNPSNPLGTTLDRDTLKSLVSFINDK-NIHLVCDEIYAATVFSSPKFTSVAEVIQ 251
G+ + SNP G T+ + + L + + D+ Y +
Sbjct: 175 GILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVV 234
Query: 252 EMDCNRDLIHIIY--SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ-TQYLL 308
S SK + G +G V S D + + + + + ++ Q
Sbjct: 235 LARDAGYPDRAFVFASTSK-ITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARH 293
Query: 309 ASMLSD-DEFVDNFLVETSKRLAKRHHNFTKGLEQ------VGINCLKSNAGLFFWMDLR 361
L++ ++ + + + +A + + L G F +D
Sbjct: 294 VKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTA 353
Query: 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF----QCTEPGWFRVCFANMDDDTLQVAL 417
+ ++ ++ V L +P + Q R+ + ++ A+
Sbjct: 354 EPVADRVVK------LAEAAGVSL--TPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAM 405
Query: 418 NRIAAFVQQ 426
+AA ++
Sbjct: 406 QVVAACIRL 414
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 66/372 (17%), Positives = 115/372 (30%), Gaps = 63/372 (16%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA--------------TGANELIMFCLA 132
G+ + R+ A+ +G D +V G+ G N+ A
Sbjct: 77 GIADIRELWAEALG--------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSA 128
Query: 133 NPGDAFLVPSP-YYAAFDRDLSWRT-GVQIVPVHCDISNNFKITREALEAAYERAQEASI 190
+L P P Y F G +++ V + + +
Sbjct: 129 EEKVKWLCPVPGYDRHFT---ITEHFGFEMINVPMT---DEGPDMGVVRELVKDP----- 177
Query: 191 NIKGLIITNP--SNPLGTTLDRDTLKSLVSFIND-KNIHLVCDEIYAATVFS--SPKFTS 245
+KG + T P NP G T T + L + +V D YA S P +
Sbjct: 178 QVKG-MWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHN 236
Query: 246 VAEVIQEMDCNRDLIHIIY--SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ 303
V E Q N + + S SK + G V S + + + G+ ++
Sbjct: 237 VIEFAQAAG-NPN--RFWFMSSTSK-ITHAGSGVSFFASSKENIEWYASHANVRGIGPNK 292
Query: 304 -TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-----VGINCLKSNAGLFFW 357
Q A D + +++ + LA + + L+ G F
Sbjct: 293 LNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFIS 352
Query: 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF-QCTEPG--WFRVCFANMDDDTLQ 414
+D+ + +E + L GSSF +P R+ + L+
Sbjct: 353 VDVVPGTASRVVE------LAKEAGIAL-TGAGSSFPLHNDPNNENIRLAPSLPPVAELE 405
Query: 415 VALNRIAAFVQQ 426
VA++ A V
Sbjct: 406 VAMDGFATCVLM 417
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 53/273 (19%), Positives = 101/273 (36%), Gaps = 28/273 (10%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
+A + I++ G++ + A+ ++P Y
Sbjct: 54 LMLGNKLAAHHQ--------VEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDG 105
Query: 149 DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208
+ G+++ V +N+ E L+AA A + + NP+NP GT
Sbjct: 106 -EHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVA----AYSGPSIVYLVNPNNPTGTIT 158
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268
D ++ ++ N + DE YA V + P+F S++ +I + N +I ++ + SK
Sbjct: 159 PADVIEPWIASK-PANTMFIVDEAYAEFV-NDPRFRSISPMITQGAEN--II-LLKTFSK 213
Query: 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYL-LASMLSDDEFVDNFLVETSK 327
+ G RVG + + GR ++ ++ LAS ++D F+
Sbjct: 214 IHAMAGMRVGYAVAHPTVIALMGRYVAGEK-INFSGVDAALAS-MNDSAFITYSKKSNDV 271
Query: 328 RLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
K LE + + L S F + L
Sbjct: 272 SRQI----LLKALEDLKLPYLPSEGN-FVFHQL 299
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 45/273 (16%), Positives = 100/273 (36%), Gaps = 31/273 (11%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
R+ VA F + + ++ G EL+ L + ++ +P + +
Sbjct: 70 SSLRKEVADFYQ--------LEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQY 121
Query: 149 DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208
R + G ++ + + + + E + A + + I NP+NP G +
Sbjct: 122 -RQNALIEGAEVREI--PLLQDGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYI 172
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268
+ +++ + + ++ +V DE Y + +P+ ++++ N LI I + SK
Sbjct: 173 ELADIQAFLDRV-PSDVLVVLDEAYIE--YVTPQPEKHEKLVRTYK-N--LI-ITRTFSK 225
Query: 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327
GL RVG + + ++ + F +S Q L + D F+ +
Sbjct: 226 IYGLASARVGYGIA-DKEIIRQLNIVRPPFN-TTSIGQKLAIEAIKDQAFIGECRTSNAN 283
Query: 328 RLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
+ + + +N F +DL
Sbjct: 284 GIKQYEAFAK---RFEKVKLYPANGN-FVLIDL 312
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 7e-17
Identities = 68/357 (19%), Positives = 127/357 (35%), Gaps = 52/357 (14%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
E QAV + +FD + IV G A + + G+A L+ SP Y F
Sbjct: 69 DELLQAVLDWEKS-EHQ-YSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPF 126
Query: 149 DRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPSNPLGTT 207
R + ++V N F+I E LE ++K ++ NP NP G
Sbjct: 127 ARSVR-LNNRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRV 180
Query: 208 LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
+R+ L+ + ++ LV DEI+ + S V + + ++ S +
Sbjct: 181 WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDF--AL-VLSSAT 237
Query: 268 KDMGLPGFRVGIVYSFNDTV---------VNCGRKMSSFGLVSSQTQY---------LLA 309
K + G + N T+ VN ++SS G ++++T Y L A
Sbjct: 238 KTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKA 297
Query: 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL 369
+ + +F + + + + +K W+D L
Sbjct: 298 VLEENIQFAVEYFAQEAP----------------RLKVMKPQGTYLIWLDFSDY----GL 337
Query: 370 EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ AL+ + + K+ ++ GS + R+ A ++ RI + +
Sbjct: 338 TDD-ALFTLLHDQAKVILNRGSDYGSEGELHARLNIA-APKSLVEEICKRIVCCLPK 392
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 63/356 (17%), Positives = 135/356 (37%), Gaps = 55/356 (15%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
+ +++ ++ + R + ++ G A L++ L D ++ P Y+ F
Sbjct: 70 DSYNESIVNWLYR-RHN-WKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPF 127
Query: 149 DRDLSWRTGVQIV--PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
+ + +++ P+ + N+ + E +E + ++K I+ NP NP+G
Sbjct: 128 NSVVK-NNNRELIISPLQKLENGNYIMDYEDIENKIK-------DVKLFILCNPHNPVGR 179
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
+D LK L N+ ++ DEI++ + K +A + +E + N I +
Sbjct: 180 VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKN--TI-TCMAP 236
Query: 267 SKDMGLPGFRVGIVYSFNDTV---------VNCGRKMSSFGLVSSQTQY---------LL 308
+K + G + V ++ ++ + F LV+++ Y L
Sbjct: 237 TKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFL 296
Query: 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKT 368
+ S+ +F ++ ++ + + K W+D L
Sbjct: 297 EYLESNIDFAIKYI---NENMP-------------KLKVRKPEGTYLLWVDFSAL----G 336
Query: 369 LEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
L E L +V K+ ++ G+SF G+ R+ A L+ AL RI +
Sbjct: 337 LSDE-ELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAI 390
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 68/356 (19%), Positives = 125/356 (35%), Gaps = 59/356 (16%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG-ATGANELIMFCLANPGDAFLVPSPYYAA 147
QA A+F R G P+ I G I +VP+P Y
Sbjct: 61 SLLSQATAEFYAD-RYG-YQARPEWIFPIPDVVRGLYIAID-HFTPAQSKVIVPTPAYPP 117
Query: 148 FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT 207
F L T + + + I +E ++ + +++ NP NPLG
Sbjct: 118 F-FHLLSATQREGIFID----ATGGINLHDVEKGFQA------GARSILLCNPYNPLGMV 166
Query: 208 LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
+ L L + + ++ DEI+A VF + T A V + I + S
Sbjct: 167 FAPEWLNELCDLAHRYDARVLVDEIHAPLVF-DGQHTVAAGVSDTA---ASVCITITAPS 222
Query: 268 KDMGLPGFRVGIVY--------SFNDTVVNCGRKMSSFGLVSSQTQY---------LLAS 310
K + G + + + S+ GL++++ Y +A
Sbjct: 223 KAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAY 282
Query: 311 MLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLE 370
+ ++ +F+ + + KR+ G A W+D R T+E
Sbjct: 283 LKNNHDFLLHEI---PKRIP-------------GAKITPMQATYLMWIDFRDT----TIE 322
Query: 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
G + + + K+ ++ G+ F G+ R+ FA + L+ A++R+A V
Sbjct: 323 GSPSEF--FIEKAKVAMNDGAWFGEDGTGFCRLNFA-TSREVLEEAIDRMAKAVSH 375
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 58/365 (15%), Positives = 118/365 (32%), Gaps = 56/365 (15%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA-TGANELIMFCLANPGDAFLVPSPYYAA 147
E+++ V K+M R D I+ G + PGD ++ +P Y
Sbjct: 69 EEYKKTVKKWMKD-RHQ-WDIQTDWIINTAGVVPAVFNAVR-EFTKPGDGVIIITPVYYP 125
Query: 148 FDRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
F + +I+ + + I + LE + N K L+ +P NP+G
Sbjct: 126 FFMAIK-NQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGR 179
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
+D L+ + + ++ L DEI+ + + T + +++ D +
Sbjct: 180 VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQL---ADKTITFTAP 236
Query: 267 SKDMGLPGFRVGIVYSFNDTV---------VNCGRKMSSFGLVSSQTQY---------LL 308
SK + G + + N + G ++ G + + Y +
Sbjct: 237 SKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCI 296
Query: 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-LKEK 367
+ + V +F I W+D R L + K
Sbjct: 297 KVIDKNQRIVKDFF---EVNHP-------------EIKAPLIEGTYLQWIDFRALKMDHK 340
Query: 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427
+E +++ ++ G F G+ R+ A +Q +L R+ ++
Sbjct: 341 AME------EFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKALKDL 393
Query: 428 KESEK 432
K
Sbjct: 394 KNRHL 398
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 58/356 (16%), Positives = 116/356 (32%), Gaps = 52/356 (14%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
E+ +AVA + D V G A ++ +PGD LV P Y F
Sbjct: 65 AEYYKAVADWEEI-EHR-ARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMF 122
Query: 149 DRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPSNPLGTT 207
+ G +++ N+ + + LE +++ ++ NP NP+G
Sbjct: 123 YSVIE-GNGRRVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHNPIGYA 176
Query: 208 LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
+ +K + + L+ DEI+ V + T V + ++ + S S
Sbjct: 177 WSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNW--VV-SLISPS 233
Query: 268 KDMGLPGFRVGIVYSFNDTV---------VNCGRKMSSFGLVSSQTQY---------LLA 309
K L N + + + + + ++ Y L
Sbjct: 234 KTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQ 293
Query: 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL 369
+ + + FL +K + + L SNA W+D+ L +
Sbjct: 294 VLRDNFAYAREFL---AKEVP-------------EVKVLDSNASYLAWVDISAL----GM 333
Query: 370 EGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425
E + + L +S G+ ++ + R+ A + + + R+ V
Sbjct: 334 NAE-DFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLKQGVL 387
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 53/276 (19%), Positives = 107/276 (38%), Gaps = 34/276 (12%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
E + +A+ + I++G G+ E + N +AFL +A +
Sbjct: 68 IELKSTLAQKYK--------VQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMY 119
Query: 149 DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208
+ + G + + + L ++ IK + + P+NPLG L
Sbjct: 120 -EIYAKQCGAKCYKT--QSITHNLDEFKKLYETHKD------EIKLIFLCLPNNPLGECL 170
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYA--ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
D + + +++ +V D Y A+ S K E+I+E D +++ + +
Sbjct: 171 DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFD---NVL-YLGTF 225
Query: 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSS-FGLVSSQTQYL-LASMLSDDEFVDNFLVE 324
SK GL G R+G + N +++ K+ + F VS+ +A+ + DDEF + L
Sbjct: 226 SKLYGLGGLRIGYGIA-NANIISAFYKLRAPFN-VSNLALKAAVAA-MDDDEFTEKTLEN 282
Query: 325 TSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
++ + + ++ I + S F
Sbjct: 283 NFSQMEL----YKEFAKKHNIKIIDSYTN-FITYFF 313
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 60/364 (16%)
Query: 85 YHGLP--EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS 142
Y EF A+A + + D +V G ++ + G+ ++ +
Sbjct: 61 YSRWKNDEFLAAIAHWFST-QHY-TAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHT 118
Query: 143 PYYAAFDRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPS 201
P Y AF + + ++PV + + + LEA + K +++ +P
Sbjct: 119 PAYDAFYKAIE-GNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQ 172
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G D L+ + + ++ DEI+ V+ + V + D
Sbjct: 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARG-----DWA- 226
Query: 262 IIYSLSKDMGLPGFRVGIVYSFNDTV----------VNCGRKMSSFGLVSSQTQY----- 306
++ S SK +P N + + S L + Y
Sbjct: 227 LLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAP 286
Query: 307 ----LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH 362
L + + ++ + + F +N + W+DLR
Sbjct: 287 WLDALRIYLKDNLTYIADKMNA----------AFP------ELNWQIPQSTYLAWLDLRP 330
Query: 363 L-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421
L + + L+ + ++ K+ + PG ++ G+ R+ L+ + +
Sbjct: 331 LNIDDNALQ------KALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLI 383
Query: 422 AFVQ 425
++
Sbjct: 384 NAIR 387
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 66/359 (18%), Positives = 124/359 (34%), Gaps = 57/359 (15%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA-TGANELIMFCLANPGDAFLVPSPYYAA 147
+ QAV + K + I+ G + + + GDA L+ SP Y
Sbjct: 99 DDLYQAVIDWERK-EHD-YAVVKEDILFIDGVVPAISIALQ-AFSEKGDAVLINSPVYYP 155
Query: 148 FDRDLSWRTGVQIVPVHCDISNN-FKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
F R + ++V I N F+I E LE N+K ++ +P NP G
Sbjct: 156 FARTIR-LNDHRLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGR 209
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
D D L + + LV DEI+ S+ + I I+ S
Sbjct: 210 VWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDF--TI-ILSSA 266
Query: 267 SKDMGLPGFRVGIVYSFNDTV---------VNCGRKMSSFGLVSSQTQY---------LL 308
+K + G + N+++ N ++ + G++++Q + L
Sbjct: 267 TKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELK 326
Query: 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-LKEK 367
+ + + V L + I ++ W+D + +
Sbjct: 327 TVIEGNIKLVIKEL--------EAKT---------KIKVMEPEGTYLVWLDFSAYAIAQP 369
Query: 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
L + N+ K+ ++ G+ F + R+ A +T+Q AL+RI + +
Sbjct: 370 QLS------EKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRIISVFGK 421
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 42/280 (15%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI---MFCLANPGDAFLVPSPYY 145
E R +A ++ K G V D + G+NE++ + PG L P Y
Sbjct: 72 VELRDELAAYITKQTGVAV--TRDNLWAA---NGSNEILQQLLQAFGGPGRTALGFQPSY 126
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ L+ T + + V +F+I + Q + +T P+NP G
Sbjct: 127 SMH-PILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQ-----PDIVFVTTPNNPTG 178
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
D ++ +++ ++ DE YA F+ ++ + + +
Sbjct: 179 DVTSLDDVERIINVAPG---IVIVDEAYAE-------FSPSPSATTLLEKYPTKLVVSRT 228
Query: 266 LSKDMGLPGFRVGIVYSF-NDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVD---N 320
+SK G R+G Y N ++ + + +S+ +Q L
Sbjct: 229 MSKAFDFAGGRLG--YFVANPAFIDAVMLVRLPYH-LSALSQAAAIVALRHSADTLGTVE 285
Query: 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL 360
L R+ LE++G + S + F +
Sbjct: 286 KLSVERVRV-------AARLEELGYAVVPSESN-FVFFGD 317
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 31/258 (12%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPG-DAFLVPSPYYAA 147
+ A++ G P+++++ GA EL++ PG DA L P Y
Sbjct: 61 KAVIENYAQYAG--------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGM 112
Query: 148 FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT 207
+ + GV+ V +N+++ + + + +K + + +P+NP G
Sbjct: 113 Y-SVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQL 162
Query: 208 LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
++ ++L+ K I +V DE Y F A + + L I+ +LS
Sbjct: 163 INPQDFRTLLELTRGKAI-VVADEAYIE-------FCPQASLAGWLAEYPHLA-ILRTLS 213
Query: 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327
K L G R G + N+ V+N K+ + +S+ + A LS V + E
Sbjct: 214 KAFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVA--MRERVA 270
Query: 328 RLAKRHHNFTKGLEQVGI 345
++ L+++
Sbjct: 271 QIIAEREYLIAALKEIPC 288
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 46/276 (16%), Positives = 89/276 (32%), Gaps = 47/276 (17%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI-MFCLANPGDAFLVPSPYYAA 147
P + +A+ D +++ G +E F+ P +
Sbjct: 54 PRVMRKLAEHFS--------CPEDNLMLV---RGIDECFDRISAEFSSMRFVTAWPGFDG 102
Query: 148 FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT 207
+ R +G++ + ++ + L A R +++ NPSNP G
Sbjct: 103 Y-RARIAVSGLRHFEIGLT--DDLLLDPNDL-AQVSRD-------DCVVLANPSNPTGQA 151
Query: 208 LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267
L L L + L+ DE Y +SS + +A + + + S S
Sbjct: 152 LSAGELDQLR----QRAGKLLIDETYVD--YSSFRARGLAY-------GENEL-VFRSFS 197
Query: 268 KDMGLPGFRVGIVYSF-NDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVET 325
K GL G R+G F ++ ++ V + + L + L +D +
Sbjct: 198 KSYGLAGLRLG--ALFGPSELIAAMKRKQWFCN-VGTLDLHALEAALDNDRARE----AH 250
Query: 326 SKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361
+ + L +G S A F ++
Sbjct: 251 IAKTLAQRRRVADALRGLGYRVASSEAN-FVLVENA 285
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 72/281 (25%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMF---CLANPGDAFLVPSPYY 145
+ R+ + G FDP I+M G++E++ A G+ P Y
Sbjct: 68 QKLREVAGELYG--------FDPSWIIMA---NGSDEVLNNLIRAFAAEGEEIGYVHPSY 116
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ + + ++ +F+I A K +T P+ PLG
Sbjct: 117 SYYG---TLAEVQGARVRTFGLTGDFRI---AGFPERYEG-------KVFFLTTPNAPLG 163
Query: 206 TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265
+ + + L LV DE YA F+ + E+++ + N ++ + +
Sbjct: 164 PSFPLEYIDELARRCAG---MLVLDETYAE--FAES---NALELVRRHE-N--VV-VTRT 211
Query: 266 LSKDMGLPGFRVG--------------IVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASM 311
LSK L G R+G I +N + Q +
Sbjct: 212 LSKSYSLAGMRIGLAIARPEVIAALDKIRDHYN---------------LDRLAQAACVAA 256
Query: 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352
L D ++ E +R+ + FT L +G + + S
Sbjct: 257 LRDQAYLS----ECCRRIRETREWFTTELRSIGYDVIPSQG 293
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 49/267 (18%), Positives = 97/267 (36%), Gaps = 49/267 (18%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD 149
E + + ++ + + +G GA+E+I + D + P Y+ +
Sbjct: 60 ELIEKILSYLD-----TDFLSKNNVSVG---NGADEIIYV-MMLMFDRSVFFPPTYSCY- 109
Query: 150 RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD 209
R + G + + V + +I E + I NP+NP G +
Sbjct: 110 RIFAKAVGAKFLEVPLT--KDLRI----PEVNVGEG-------DVVFIPNPNNPTGHVFE 156
Query: 210 RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269
R+ ++ ++ + DE Y F S + +++ + N L +I + SK
Sbjct: 157 REEIERIL----KTGAFVALDEAYYE--FHGE---SYVDFLKKYE-N--LA-VIRTFSKA 203
Query: 270 MGLPGFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVD---NFLVET 325
L RVG V + ++ ++ ++ F VS +Q L E + F+VE
Sbjct: 204 FSLAAQRVGYVVA-SEKFIDAYNRVRLPFN-VSYVSQMFAKVALDHREIFEERTKFIVEE 261
Query: 326 SKRLAKRHHNFTKGLEQVGINCLKSNA 352
+R+ L ++G S
Sbjct: 262 RERM-------KSALREMGYRITDSRG 281
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 36/237 (15%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI---MFCLANPGDAFLVPSPYY 145
R + + M V+ G G++E+I A PG + P P +
Sbjct: 70 EALRAKLKEVMQ--------VPAGMEVLLG--NGSDEIISMLALAAARPGAKVMAPVPGF 119
Query: 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG 205
+ + G++ V V +F + R A+ AA Q + + P+NP G
Sbjct: 120 VMY-AMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAEHQ-----PAIVYLAYPNNPTG 171
Query: 206 TTLDRDTLKSLVSFINDKNIH--LVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
D ++++V +V DE Y F+ + + + +L+ ++
Sbjct: 172 NLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP--FAQESW------MSRLTDFGNLL-VM 222
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVD 319
++SK +GL G R+G V + + K+ + V+ T+ L +D
Sbjct: 223 RTVSK-LGLAGIRLGYVAG-DPQWLEQLDKVRPPYN-VNVLTEATALFALEHVAVLD 276
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 58/354 (16%), Positives = 121/354 (34%), Gaps = 66/354 (18%)
Query: 92 RQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAAFDR 150
+ KF+G D + GA A +M LA ++ +Y+++
Sbjct: 60 HNQLPKFLGC----------DVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSY-- 107
Query: 151 DLSW-RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD 209
++ R G+ I V ++ IT E E ++ + +IT P G D
Sbjct: 108 -VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVL-ALITYPDGNYGNLPD 165
Query: 210 RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF-TSVAEVIQEMDCNRDLIHIIYSLSK 268
+K + ++ ++ L+ + YA + S+ +E+ D I+ S K
Sbjct: 166 ---VKKIAKVCSEYDVPLLVNGAYAI-----GRMPVSL----KEIGA--DF--IVGSGHK 209
Query: 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSF---------GLVSSQTQYLLASMLSDDEFVD 319
M G +G++ + R+ + T L + +
Sbjct: 210 SMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF--PHVRE 266
Query: 320 NFLVETSKRLAKRHHNFTKGLEQVGINCL----KSNAGLFFWMDLRHLLKEKTLEGEIAL 375
++ ++ F +E++GI L ++ +FF ++ + + +K G L
Sbjct: 267 R--IKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFL 324
Query: 376 WRTIVNDVKLNVSPGSSFQCTEPG---WFRVCFANMDD---DTLQVALNRIAAF 423
+R + +PG +F++ + D D + A I
Sbjct: 325 YRELK---------SRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 9e-06
Identities = 42/329 (12%), Positives = 87/329 (26%), Gaps = 45/329 (13%)
Query: 118 GGATGANELIMFCLANPGDAFLVP-----SPYYAAFDRDL---------SWRTGVQIVPV 163
G +G+N IM D +V S + + +
Sbjct: 228 VGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYP 287
Query: 164 HCDISNNFKITREALEAAYER----AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSF 219
+ E L+ +A ++TN G + K
Sbjct: 288 QE-------MQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDL 336
Query: 220 INDKNIHLVCDEIYAATVFSSPKF-TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278
+ + L DE + +P + A + D N + +S K L
Sbjct: 337 LEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHK--LLNALSQA 394
Query: 279 --IVYSFNDTVVNCGR-KMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA----K 331
I +N R + ++ Y + S+D V + L
Sbjct: 395 SYIHVREGRGAINFSRFNQAYMMHATTSPLYAI--CASNDVAVSMMDGNSGLSLTQEVID 452
Query: 332 RHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS 391
+F + + ++ + F + + +T G+ + + V
Sbjct: 453 EAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQT--GKTYDFADAPTKLLTTVQDCW 510
Query: 392 SFQCTEP--GWFRVCFANMDDDTLQVALN 418
E G+ + D ++V++
Sbjct: 511 VMHPGESWHGFKDIPDNWSMLDPIKVSIL 539
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 84/549 (15%), Positives = 153/549 (27%), Gaps = 199/549 (36%)
Query: 57 DWITKNPYASICTAEGVE----------VFKDIAIFQDYH-----GLPEFRQAVAKFMGK 101
++ +P + + ++ D +F Y+ + RQA+ +
Sbjct: 92 KFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--- 147
Query: 102 GRGGRVTFDPDRIV----MGG-GATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRT 156
P + V + G G T +A D + D + W
Sbjct: 148 --------RPAKNVLIDGVLGSGKT--------WVAL--DV-CLSYKVQCKMDFKIFWLN 188
Query: 157 -G----------------VQIVPVHC---DISNNFKITREALEAAYERAQEASINIKGLI 196
QI P D S+N K+ +++A R ++ L+
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 197 I-TNPSNP------------LGTTLDRDTLKSLVSFIN-DKNIHLVCDEI-------YAA 235
+ N N L TT R K + F++ H+ D
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTT--RF--KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 236 TVFS-----------------SPKFTS-VAEVIQEMDC--------NRDLIHIIYSLSKD 269
++ +P+ S +AE I++ N D + I S +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 270 MGLPG-FR-----VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLL--ASMLSDDEFVDNF 321
+ P +R + + F + + + L+ + SD V N
Sbjct: 365 VLEPAEYRKMFDRLSV---FPPSA-----------HIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 322 LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV- 380
L L ++ + +L + LE E AL R+IV
Sbjct: 411 LH--KYSLVEKQ----------------PKESTISIPSI-YLELKVKLENEYALHRSIVD 451
Query: 381 ----------NDVKLNVSPGSSFQ-------CTEPG----WFRVCFANMD--------DD 411
+D+ + E FR+ F + D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 412 TLQVALNRIAAFVQQDKESEK------PTKKRWQQNLRVSFSSRIYEQGVMSPH------ 459
T A I +QQ K + P +R + + F +I E + S +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRI 570
Query: 460 -MMSPHSPI 467
+M+ I
Sbjct: 571 ALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 58/445 (13%), Positives = 122/445 (27%), Gaps = 153/445 (34%)
Query: 23 WKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIF 82
W AF+ + C L+ T+ + I++
Sbjct: 259 WNAFN-------------LS--------CKILL---TTRF--KQVTDFLSAATTTHISLD 292
Query: 83 QDYHGL--PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLV 140
L E + + K++ R P + NP
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDC----RPQDLPREV---------------LTTNP----RR 329
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK-ITREALEAAYERAQEASINIKGLIITN 199
S A RD +N+K + + L E+S+N+
Sbjct: 330 LS-IIAESIRD------------GLATWDNWKHVNCDKLT----TIIESSLNV------- 365
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNI--HLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR 257
L R L F +I L+ ++ + V V+ ++
Sbjct: 366 ----LEPAEYRKMFDRLSVFPPSAHIPTILLS------LIWFDVIKSDVMVVVNKL-HKY 414
Query: 258 DLI--------HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLA 309
L+ I S+ ++ + + Y+ + ++V+ +F + L
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVK---LENEYALHRSIVDHYNIPKTF-----DSDDL-- 464
Query: 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFF---WMD--LRH-- 362
D++ + + HH K +E L +F +++ +RH
Sbjct: 465 IPPYLDQYFYSHIG---------HH--LKNIEHPERMTLFRM--VFLDFRFLEQKIRHDS 511
Query: 363 ------------LLKEKTLEGEI----ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406
L + K + I + +VN + + + E
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-----PKIEE-----NLIC 561
Query: 407 NMDDDTLQVALNRIAAFVQQDKESE 431
+ D L++AL + ++ +
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 59/308 (19%), Positives = 103/308 (33%), Gaps = 67/308 (21%)
Query: 87 GLPEFRQAVAKFM-GKGR-GGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY 144
G+P+F A K G R G + R + G TG ++ PGD L Y
Sbjct: 81 GIPDFLCAAEKECFGNFRPEGHI-----RSIATAGGTGGIHHLIHNYTEPGDEVLTADWY 135
Query: 145 YAA----FDRDLSWRTGVQIV------PVHCDISNNFKITREALEAAYERAQEASINIKG 194
+ A TG +V + F+ L A Q +
Sbjct: 136 WGAYRVICSD-----TGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK----QTNVV---- 182
Query: 195 LIITNPS--NPLGTTLDRDTLKSLVSFIND------KNIHLVCDEIYAATVFSSPKFTSV 246
+I N NP G +++ S+++F+ D N+ + D Y +S K
Sbjct: 183 -VIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLD--YSGEKDEVR 239
Query: 247 AEVIQEMDCNRDLIHII-YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQ 305
A + ++++ + YSLSK + G RVG + + + + +
Sbjct: 240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAM-----IGI-SDDEEIA-DEFFEVNK 292
Query: 306 YL---------------LASMLSDDEFVDNFLVET---SKRLAKRHHNFTKGLEQVGINC 347
+A++++D + E + + R F + QVG+
Sbjct: 293 STSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPM 352
Query: 348 LKSNAGLF 355
L G F
Sbjct: 353 LPYRGGFF 360
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 49/365 (13%), Positives = 103/365 (28%), Gaps = 71/365 (19%)
Query: 118 GGATGANELIMFCLANPGDAFLVP-----SPYYAAFDRDLSWRTGVQIVPVHCDISNNFK 172
G T ++ + L+ S +A D+S + + S
Sbjct: 79 NGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL---DIS---QQEGHFIETHQSPLTN 132
Query: 173 ITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232
++ + K +++T P N G T + ++ ++ ++ NI ++ DE
Sbjct: 133 H-----YNKVNLSRLNNDGHKLVVLTYP-NYYGETFN---VEEVIKSLHQLNIPVLIDEA 183
Query: 233 YAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR 292
+ A S ++ D ++ S K LP +G V +
Sbjct: 184 HGAHFGLQGFPDST------LNYQADY--VVQSFHK--TLPALTMGSVLYIHKNAPYREN 233
Query: 293 -KMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN 351
+S YL+ M S + + S + + LE G L+ +
Sbjct: 234 IIEYLSYFQTSSPSYLI--MASLESAAQFYKTYDSTLFFAKRAQLIECLENKGFEMLQVD 291
Query: 352 AGLFFW--------MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403
L D+++ + E+A + +
Sbjct: 292 DPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQAL--------------------AIL 331
Query: 404 CFANMDDDTLQVALNRIAAFVQQDKESEKPTKKRWQQNLRVSFSSRIYEQGVMSPHMMSP 463
+ DD L +L + + +K + Q + +G P
Sbjct: 332 PLWHHDDTYLFDSL--LRKIEDMILPKKSVSKVKQTQ--------LLTTEGNYKPKRFEY 381
Query: 464 HSPIP 468
+
Sbjct: 382 VTWCD 386
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.98 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.98 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.98 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.98 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.98 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.98 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.98 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.98 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.96 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.96 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.95 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.95 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.94 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.94 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.94 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.94 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.93 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.93 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.93 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.93 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.93 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.93 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.92 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.92 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.92 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.92 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.91 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.91 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.91 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.9 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.89 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.89 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.89 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.89 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.88 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.88 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.87 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.86 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.85 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.85 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.75 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.78 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.75 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.75 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.74 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.67 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.61 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.56 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.55 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.52 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.5 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.48 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.48 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 87.58 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.39 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 86.35 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 85.59 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 85.41 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 84.85 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 84.66 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 84.32 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 83.83 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 83.76 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 83.7 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 83.26 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 82.99 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 82.59 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 82.44 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 82.24 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 82.23 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 82.16 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 82.12 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 82.11 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 81.8 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 81.49 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 81.31 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 81.25 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 80.66 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 80.65 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 80.55 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 80.43 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 80.19 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 80.04 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-63 Score=515.98 Aligned_cols=427 Identities=56% Similarity=1.058 Sum_probs=363.5
Q ss_pred CccccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccc
Q 011801 1 MGILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIA 80 (477)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (477)
|+|||+.|++..|+++|+||++|++|.+|+|+++.||.++|+||+++|+++.+.+.+++.+++....+..+|...++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (435)
T 3piu_A 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELA 80 (435)
T ss_dssp -----------------CTTHHHHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHH
T ss_pred CCccchhhhhcccccCcchhhHHHHhhcCCCCcccCCCCeEEeccccccccHHHHHHHHHhCcccccccccccccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999998766555555655566778
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
.|++.+|.++||+++|+++++.++..+.+++++|++|+|+++|+..++.++.++||.|+++.|+|+++...+....|.++
T Consensus 81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~ 160 (435)
T 3piu_A 81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEI 160 (435)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEE
Confidence 89999999999999999999877766778899999999999999999999999999999999999999888774349999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
++++++.+++|.+|+++|++++++..+.+.++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|++++|++
T Consensus 161 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~ 240 (435)
T 3piu_A 161 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240 (435)
T ss_dssp EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred EEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 99999877789999999999998877667789999999999999999999999999999999999999999999988888
Q ss_pred CCcccHHHhhhhccCC-----CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCCh
Q 011801 241 PKFTSVAEVIQEMDCN-----RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~-----~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~ 315 (477)
..+.++..+..+.+++ ++++++++||||.+|++|+|+||++++++.+...+++...++.+++++|.+++.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (435)
T 3piu_A 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDK 320 (435)
T ss_dssp SCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCH
T ss_pred CCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCh
Confidence 7777777765421111 57899999999999999999999999888787777777777778999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+++++++++.+++++++++.+.+.|++.|+++..+.+|+|+|++++..........+.++++.+++++||.+.||+.|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 321 KLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 87777888899999999999999999999999999999999999987554444445567888888888999999999988
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++++||+++..+++++++++++|++++++.
T Consensus 401 ~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 401 TEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 78899999998669999999999999999764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-58 Score=474.63 Aligned_cols=424 Identities=73% Similarity=1.280 Sum_probs=351.3
Q ss_pred cccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccccc
Q 011801 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIF 82 (477)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (477)
+||+.+..+.+.++.+||++|++|..++||+..+|.++|+|+.++|+++++.+++++...+...++. ++...+.....|
T Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T 1iay_A 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccccCcccccccchhhhhccCCCCcccCCCceeeeccccchhhHHHHHHHHHhcccccccc-ccccccHhhcCC
Confidence 5899999999999999999999999999999999999999999999999999999998765443322 222222345689
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 83 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
++..|..++|+++|+++++.+|..+.+++++|++|+|+++++.+++.+++++||.|+++.|+|+++...+....|+++++
T Consensus 80 ~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~ 159 (428)
T 1iay_A 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEE
Confidence 99889999999999999988775555778999999999999999999999999999999999999887554334999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++.+++|.+|+++|++++++....+.++++|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++..
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~ 239 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred eecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCC
Confidence 99876567899999999999865545568999999999999999999999999999999999999999999988787655
Q ss_pred cccHHHhhhhc---cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEM---DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~---~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+.++..+..+. ++..+++++++||||.+|++|+|+||++++++.+.+.+++...++.+++++|.++..+|.+.++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 319 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVD 319 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHH
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHH
Confidence 56666554310 012588999999999999999999999997776766666666666689999999999999987657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+++++.+++++++++.+.+.|++.|+++.++.+|+|+|++++............++++.+++++||.++||+.|+..+++
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~ 399 (428)
T 1iay_A 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPG 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 78888999999999999999999998888887899999999864322222334467788887779999999988866678
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++||+++..+++++++++++|++++++.
T Consensus 400 ~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 400 WFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 9999998669999999999999998763
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-48 Score=392.00 Aligned_cols=351 Identities=20% Similarity=0.382 Sum_probs=285.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|.+++|+++|+++++.+| +.+++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~ 95 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETI 95 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEE
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHHEE
Confidence 346899999988764 3445555443210 1134688888999999999999988776 456789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+.+...++.. |.+++.++++.+++|.+|+++|++++++ ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 168 (385)
T 1b5p_A 96 VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKAL 168 (385)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEE
Confidence 9999999999999999999999999999999999888877 9999999997656789999999988753 68999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++||||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+ . . +++++++||||.+|++|+
T Consensus 169 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~-~----~-~~~i~~~s~SK~~~~~G~ 241 (385)
T 1b5p_A 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRV-A----P-EHTLTVNGAAKAFAMTGW 241 (385)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGT-C----T-TTEEEEEESTTTTTCGGG
T ss_pred EEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHc-C----C-CCEEEEEechhhcCCccc
Confidence 999999999999999999999999999999999999999887765 44555444 1 2 789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+.+... ...++.+.|.++..+|++.+...+++++.+++++++++.+.+.|+++|+++..+++|
T Consensus 242 RiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 320 (385)
T 1b5p_A 242 RIGYACGPKE-VIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (385)
T ss_dssp CCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred ceEEEEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCee
Confidence 9999999554 4444444332 235788999999889876211134578888999999999999999889988889999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++.. .. +..++++.++ ++||.+.||+.|+. ++++||+++ .+++++++++++|+++++
T Consensus 321 ~~~~~~~~~~----~~-~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 321 FYVLMDTSPI----AP-DEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARVLG 383 (385)
T ss_dssp TEEEEECTTT----CS-SHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGGC-
T ss_pred EEEEEecCCC----CC-CHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 9999998731 01 1235777777 67999999999964 689999999 589999999999987764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=394.99 Aligned_cols=374 Identities=20% Similarity=0.321 Sum_probs=297.6
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
++|+++.+....+.+.++.+....... .+ .....|++..|.+++|+++|+++++.+| +.+++++|++|+
T Consensus 96 ~~i~~~~~~~~~p~~~~~~a~~~l~~~-----~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~ 164 (500)
T 3tcm_A 96 DLLQREEIKTLFSADSISRAKQILAMI-----PG----RATGAYSHSQGIHGLRDAIASGIASRDG--FPANADDIFLTD 164 (500)
T ss_dssp GGGGCTTHHHHSCHHHHHHHHHHHTTS-----TT----SCSSSCCCTTCCHHHHHHHHHHHHHHHS--SCCCGGGEEEES
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHcC-----CC----CcCCCcCCCcChHHHHHHHHHHHHhhcC--CCCCcccEEEcC
Confidence 456666654444555555543221100 00 1346799999999999999999988776 457889999999
Q ss_pred ChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 119 GATGANELIMFCLA-NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 119 G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+++++.+++.+++ ++||.|+++.|+|+.+...++.. |.++++++++++++|.+|+++|++++++....+.++++|++
T Consensus 165 G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl 243 (500)
T 3tcm_A 165 GASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH-GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVV 243 (500)
T ss_dssp SSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHT-TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999998 89999999999999999988877 99999999998888999999999999987666778999999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccC--CCCcEEEEecCCccc-CCC
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDC--NRDLIHIIYSLSKDM-GLP 273 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~--~~~~viiv~SlSK~~-g~~ 273 (477)
+||+||||.+++.+++++|+++|+++|+++|+||+|.+++|++ ..+.++..+..+.+. ...++++++||||.| |++
T Consensus 244 ~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 323 (500)
T 3tcm_A 244 INPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC 323 (500)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG
T ss_pred ECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC
Confidence 9999999999999999999999999999999999999988864 456777665443211 234578899999999 999
Q ss_pred CceEEEEEe---CCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChh--------hHHHHHHHHHHHHHHHHHHHHHHHh
Q 011801 274 GFRVGIVYS---FNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDE--------FVDNFLVETSKRLAKRHHNFTKGLE 341 (477)
Q Consensus 274 G~RvG~i~~---~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~--------~~~~~~~~~~~~l~~r~~~l~~~L~ 341 (477)
|+|+||+++ +++ +.+.+.+.. .....+.+.|.++..++.+.+ + .+++.+.+++++++++.+.+.|+
T Consensus 324 G~R~G~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~L~ 401 (500)
T 3tcm_A 324 GKRGGYFEITGFSAP-VREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALEHAFN 401 (500)
T ss_dssp GGCCEEEEEESCCTT-HHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCCHH-HHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 444 444444333 345577899999999997532 3 45567778899999999999999
Q ss_pred hC-CCeEecCCceEEEEeecc--chh-h---ccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHH
Q 011801 342 QV-GINCLKSNAGLFFWMDLR--HLL-K---EKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTL 413 (477)
Q Consensus 342 ~~-gi~~~~~~~g~~~~~~l~--~~~-~---~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l 413 (477)
++ |+++.++++|+|+|+++. ... . ......+..++..++++.||.+.||+.|+. .+.++||++|+ .+++++
T Consensus 402 ~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i 480 (500)
T 3tcm_A 402 KLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKI 480 (500)
T ss_dssp TSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTH
T ss_pred cCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHH
Confidence 98 999999999999996553 211 0 011122334567788888999999999985 45679999999 689999
Q ss_pred HHHHHHHHHHHhhh
Q 011801 414 QVALNRIAAFVQQD 427 (477)
Q Consensus 414 ~~~l~~l~~~~~~~ 427 (477)
++++++|++++++.
T Consensus 481 ~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 481 PAVISRFTVFHEAF 494 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-46 Score=377.05 Aligned_cols=352 Identities=20% Similarity=0.315 Sum_probs=288.0
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCC-
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPD- 112 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~- 112 (477)
...++|+|+.+++.++ ++.+.+.+.+.. .....|++..|.+++|+++|+++.+.+| +. ++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 92 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASL-------------HELEKYPLTAGLPELRQACANWLKRRYD--GLTVDADN 92 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTG-------------GGGGSCCCTTCCHHHHHHHHHHHHHHTT--TCCCCTTT
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHh-------------hhccCCCCCCCcHHHHHHHHHHHHHhcC--CCCCCCCC
Confidence 3557899999998885 466777776642 2456899888999999999999988776 33 5688
Q ss_pred cEEEeCChHHHHHHHHHHhcCCC-----CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPG-----DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~G-----d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+|++|+|+++|+.+++.+++++| |.|+++.|+|+++...++.. |.+++.++++ .++|.+|+++|++++++
T Consensus 93 ~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~g~~~d~~~l~~~~~~--- 167 (396)
T 3jtx_A 93 EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLG-GGEIHFANCP-APSFNPDWRSISEEVWK--- 167 (396)
T ss_dssp SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHT-TCEEEEEECC-TTTCCCCGGGSCHHHHH---
T ss_pred eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHc-CCEEEEeecC-CCCCccCHHHHHHhhcc---
Confidence 99999999999999999999997 79999999999999888876 9999999984 46788999999999875
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++....+........+...+++++++|||
T Consensus 168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 244 (396)
T 3jtx_A 168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLS 244 (396)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEEST
T ss_pred ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccc
Confidence 79999999999999999999999999999999999999999999987776333444332211111357899999999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
|.+|++|+|+||++++++ +.+.+.... ..+.++.+.|.++..+|.+.+ ++.+.+++++++++.+.+.|++. +
T Consensus 245 K~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~-~ 318 (396)
T 3jtx_A 245 KRSNVPGLRSGFVAGDAE-LLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQ----HVIDNRRLYQEKFERVIPILQQV-F 318 (396)
T ss_dssp TTSSCGGGCCEEEEECHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHTTT-S
T ss_pred cccCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 999999999999998554 444444332 224578899999999888744 46788889999999999999876 5
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccCCHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANMDDDTLQVALNR 419 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~~~e~l~~~l~~ 419 (477)
.+..+.+|+|+|++++.. ...+++..+++++||.+.||+.|+. ..++++||+++. +++++++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~ 390 (396)
T 3jtx_A 319 DVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAED 390 (396)
T ss_dssp CCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHHH
T ss_pred CccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHHH
Confidence 566788899999999851 1235778888888999999999875 346899999986 99999999999
Q ss_pred HHHHH
Q 011801 420 IAAFV 424 (477)
Q Consensus 420 l~~~~ 424 (477)
|++++
T Consensus 391 l~~~l 395 (396)
T 3jtx_A 391 IVSLY 395 (396)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=389.61 Aligned_cols=360 Identities=19% Similarity=0.298 Sum_probs=289.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+.+.++ ++.+.+.+.+.-+. .....|++..|.+++|+++|+++.+.+| +.+++++|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~v~ 122 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI-----------PMVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVT 122 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS-----------GGGGSCCCTTCCHHHHHHHHHHHTTTTT--SCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 457899999886653 45666666553210 0245798888999999999999988776 446788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCC----------CcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISN----------NFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~----------~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++..+ +|.+|+++|++++++
T Consensus 123 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 200 (447)
T 3b46_A 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC-GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS- 200 (447)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-
Confidence 9999999999999999999999999999999999988876 9999999987543 688999999988753
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh-hhhccCCCCcEEEEe
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV-IQEMDCNRDLIHIIY 264 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~-~~~~~~~~~~viiv~ 264 (477)
++++|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++ .+.++..+ .. ..+++++++
T Consensus 201 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~----~~~~~i~i~ 270 (447)
T 3b46_A 201 -----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPE----IGQLTLTVG 270 (447)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHH----HHTTEEEEE
T ss_pred -----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCC----CCCcEEEEe
Confidence 78999999999999999999999999999999999999999999988876 33444433 11 236789999
Q ss_pred cCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011801 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ 342 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 342 (477)
|+||.+|++|+|+||+++.++.+.+.+... ...+.++++.|.++..+|+.... +.++++.+++++++++.+.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999344444444332 22334788999999888876533 566888899999999999999999
Q ss_pred CCCeEecCCceEEEEeeccchhhccC---------chHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccC
Q 011801 343 VGINCLKSNAGLFFWMDLRHLLKEKT---------LEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANM 408 (477)
Q Consensus 343 ~gi~~~~~~~g~~~~~~l~~~~~~~~---------~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~ 408 (477)
.|+++..+.+|+|+|++++....... .....++++.+++++||.+.||+.|+.. +++++|+|++.
T Consensus 350 ~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~- 428 (447)
T 3b46_A 350 LGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK- 428 (447)
T ss_dssp HTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-
T ss_pred CCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-
Confidence 99998888999999999975210000 0123467788887789999999988753 26899999986
Q ss_pred CHHHHHHHHHHHHHH
Q 011801 409 DDDTLQVALNRIAAF 423 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~ 423 (477)
+++++++++++|+++
T Consensus 429 ~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 429 DDAYLENAVERLKLL 443 (447)
T ss_dssp CHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999999873
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=379.41 Aligned_cols=344 Identities=15% Similarity=0.169 Sum_probs=268.9
Q ss_pred ccccccccccc------cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN------QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.++. +..++.+.+... ... .-.....|++..|.++||+++++|+.+..+ ..+++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~----------~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 95 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVT----------ENYKEKPYLLGNGTEDFSTLTQNLIFGNNS--KYIED 95 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHH----------HHCCCCCCCTTSSCHHHHHHHHHHHHCSSC--TTTTT
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-Hhc----------CCCCCCCCCCCCCcHHHHHHHHHHHcCCCC--ccccc
Confidence 36899998861 223455666532 100 001345799999999999999999976544 33456
Q ss_pred Cc--EEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DR--IVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~--i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++ |++|.|+++|+.+++.++.. | |.|++++|+|+.|...++.. |.+++++++..+++|.+|+++|++++++.
T Consensus 96 ~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 171 (405)
T 3k7y_A 96 KKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-GFNLKYINFFDYNLIDINYDLFLNDLRNI-- 171 (405)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-TCEEEEECCEETTTTEECHHHHHHHHHHS--
T ss_pred cceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-CCeEEEEeccccccCCcCHHHHHHHHHhC--
Confidence 65 59999999999999999987 8 99999999999999998877 99999999854557999999999998752
Q ss_pred hCCCeeEEEEeCC-CCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEe
Q 011801 188 ASINIKGLIITNP-SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIY 264 (477)
Q Consensus 188 ~~~~~k~vii~nP-~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~ 264 (477)
.+.+++++++| |||||.+++.+++++|+++|++++++||+||+|.++.+++. ...++..+.. ..+++++++
T Consensus 172 --~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~ 245 (405)
T 3k7y_A 172 --PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE----KNIAFSVCQ 245 (405)
T ss_dssp --CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT----TTCCEEEEE
T ss_pred --CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh----cCCcEEEEe
Confidence 24577777665 89999999999999999999999999999999999877542 2234444433 347899999
Q ss_pred cCCcccCCCCceEEEEEe--CCHHHHHH----HHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHH
Q 011801 265 SLSKDMGLPGFRVGIVYS--FNDTVVNC----GRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRH 333 (477)
Q Consensus 265 SlSK~~g~~G~RvG~i~~--~~~~i~~~----~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~ 333 (477)
||||.||++|+|+||+++ .++.+... +.+. ..+...+.++|.+++.+|.++++. .+++++.+++++++|
T Consensus 246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R 325 (405)
T 3k7y_A 246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNR 325 (405)
T ss_dssp ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 45544332 2222 234445679999999999886432 445677788899999
Q ss_pred HHHHHHHh----hCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 334 HNFTKGLE----QVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 334 ~~l~~~L~----~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
+.+.+.|+ ++| +++.++++|+|+|++++. +++..+ +++||.+.||. |||+
T Consensus 326 ~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~----------Ris~ 383 (405)
T 3k7y_A 326 ILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG----------RINV 383 (405)
T ss_dssp HHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS----------EEEG
T ss_pred HHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC----------eEEE
Confidence 99999999 776 577889999999998863 123455 78899999862 9999
Q ss_pred ccCCHHHHHHHHHHHHHHHhh
Q 011801 406 ANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 406 ~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+..++++++.++++|+++++.
T Consensus 384 a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 384 SGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GGCCTTHHHHHHHHHHHHHHC
T ss_pred eccCHHHHHHHHHHHHHHHhh
Confidence 988899999999999999864
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=400.68 Aligned_cols=357 Identities=15% Similarity=0.173 Sum_probs=281.8
Q ss_pred hccCCCCCCccchhhhhhc------CC-----CCCCCCCCccccccccccccccH-HHHHHHHHhCCCCccccccccccc
Q 011801 9 TNNGHGEDSAYFDGWKAFD------RN-----PFHPTQNPGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVF 76 (477)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~ 76 (477)
++++||+ +||+|| +|+ .| ||++..+|+++|+|+.+++.+++ +.+.+.+.+.- . ..+
T Consensus 19 ~~~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~l----~-~~~---- 86 (427)
T 2hox_A 19 NCSEHGR--AFLDGI-ISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAV----L-VSP---- 86 (427)
T ss_dssp CCGGGEE--CCTTSC-EETTEECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHHHTTSHHHHCE----E-ECT----
T ss_pred ccCcCCc--eeeccc-cccCCcccccccccCCCCCcccCCCceEEecCcCCCCCCCHHHHHhHHhhh----h-cCC----
Confidence 6899999 899999 888 67 99999999999999999998764 33444443321 0 011
Q ss_pred ccccccCCCC-C---cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh--------cCCCCeEEEcCCC
Q 011801 77 KDIAIFQDYH-G---LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL--------ANPGDAFLVPSPY 144 (477)
Q Consensus 77 ~~~~~Y~~~~-G---~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l--------~~~Gd~vlv~~P~ 144 (477)
.....|++.. | .++||++||+|+++..+ +.+++++|++|+|+++++.+++.+| ++|||.|++++|+
T Consensus 87 ~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~ 164 (427)
T 2hox_A 87 WHRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF 164 (427)
T ss_dssp TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSC
T ss_pred cccccCCCCCCCccchHHHHHHHHHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCC
Confidence 0112498888 9 99999999999987544 4568999999999999999999999 8999999999999
Q ss_pred ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
|+.|...++.. |.+++.+ .+|+++|++++++ ++|+|+++|||||||.+++ +.+ + +
T Consensus 165 y~~~~~~~~~~-g~~~~~~--------~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~ 219 (427)
T 2hox_A 165 YPVFREQTKYF-DKKGYVW--------AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--G 219 (427)
T ss_dssp CHHHHHHHHHS-CBTTEEE--------EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--T
T ss_pred cccHHHHHHHc-CCeeeee--------cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--C
Confidence 99999998887 8887643 4567777776643 6889999999999999999 522 2 5
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCch
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSS 302 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~ 302 (477)
+..|.|++|. + ++.++..+ ..+++++++||||.+|++|+|+||++++++.+.+.++++..+ ..++.
T Consensus 220 ~~~i~d~~~~----~--~~~s~~~~------~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~ 287 (427)
T 2hox_A 220 CKSIYDMVYY----W--PHYTPIKY------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPR 287 (427)
T ss_dssp CEEEEECTTC----S--TTTSCCCS------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCH
T ss_pred CCEEEeeccc----C--CCCCcccc------CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCH
Confidence 5677777763 3 12332222 246889999999999999999999999766676666655433 45889
Q ss_pred HHHHHHHHhcCCh-hhH-------HHHHHHHHHHHHHHHHHHHHHHhhC-CCeE--------------ecCCceEEEEee
Q 011801 303 QTQYLLASMLSDD-EFV-------DNFLVETSKRLAKRHHNFTKGLEQV-GINC--------------LKSNAGLFFWMD 359 (477)
Q Consensus 303 ~~q~~~~~~L~~~-~~~-------~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~--------------~~~~~g~~~~~~ 359 (477)
++|.++..+|.+. +++ ++++++.+++++++++.+.+.|++. |+.+ ..+++|+|+|++
T Consensus 288 ~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~ 367 (427)
T 2hox_A 288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVK 367 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEE
T ss_pred HHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEE
Confidence 9999999999864 221 4567888899999999999999987 6543 346679999999
Q ss_pred ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 360 l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++. .. .+++..+++++||.|+||+.|+. ++++|||||+. +++++++++++|++++++
T Consensus 368 ~~~--~~------~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~-~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 368 CEW--EE------DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp ECS--GG------GCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred CCC--cH------HHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 985 11 24677788788999999999987 68899999997 899999999999999965
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=381.06 Aligned_cols=358 Identities=19% Similarity=0.325 Sum_probs=287.6
Q ss_pred ccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+... .+++.+.+.+.+.-. +. ......|++..|.++||+++|+++.+.+| ++ ++++|+
T Consensus 77 ~~i~l~~g~p~~~~~p~~~v~~a~~~~l~------~~---~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~-~~~~v~ 144 (448)
T 3aow_A 77 DIISLAGGLPNPKTFPKEIIRDILVEIME------KY---ADKALQYGTTKGFTPLRETLMKWLGKRYG--IS-QDNDIM 144 (448)
T ss_dssp SSEECCCCCCCGGGSCHHHHHHHHHHHHH------HS---HHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CC-TTSEEE
T ss_pred CcEeCCCCCCCchhCCHHHHHHHHHHHHH------hh---hHHHhCCCCCCCcHHHHHHHHHHHHHhcC--cC-ChhhEE
Confidence 68999776532 255666666554210 00 01235798888999999999999976666 33 789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+++++.+++++||.|+++.|+|+++...++.. |.++++++++.+ .+|+++|+++++.....+.++++|
T Consensus 145 ~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 145 ITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEE
Confidence 9999999999999999999999999999999999988876 999999998753 389999999987321122478987
Q ss_pred -EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 -IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 -ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.|++..+.++..+. ..+++++++||||.+| ||
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~-----~~~~vi~~~S~SK~~~-~G 294 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD-----NEGRVIYLGTFSKILA-PG 294 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC-----TTSCEEEEEESTTTTC-GG
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC-----CCCCEEEEccchhhcc-cc
Confidence 4689999999999999999999999999999999999999888766555655541 3468999999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~ 349 (477)
+|+||++++++ +.+.+.... .....++++|.++..+|++..+ ++++++.++.++++++.+.+.|++. |+.+..
T Consensus 295 lriG~v~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~ 372 (448)
T 3aow_A 295 FRIGWMVGDPG-IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK 372 (448)
T ss_dssp GCCEEEEECHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred ccEEEEEeCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC
Confidence 99999999654 444443322 1234688999999999987655 6778889999999999999999875 788888
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+|+|+|++++...+ ..++++.++++ ||.+.||+.|+.. .++++||+++..+++++++++++|++++++.
T Consensus 373 p~~g~~~~v~~~~~~~------~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 373 PEGGMFIWVTLPDGID------SKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp CSBSSEEEEECSTTCC------HHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCC------HHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999985321 23577778776 9999999998753 4689999998768999999999999998753
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=375.26 Aligned_cols=357 Identities=22% Similarity=0.385 Sum_probs=290.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc-EE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-IV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-+ .....|++..|..++|+++|+++.+.+| +.+++++ |+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~ 91 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNG--IEADPKTEIM 91 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 36799999988763 4556665554210 1124688878999999999999987666 4467889 99
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++..++|.+|+++|++++++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (389)
T 1gd9_A 92 VLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRAL 164 (389)
T ss_dssp EESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCCccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888877 9999999987545688999999998853 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|+
T Consensus 165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 240 (389)
T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG----MFERTITVNGFSKTFAMTGW 240 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT----CGGGEEEEEESTTTTTCGGG
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC----CCCCEEEEecChhhcCCccc
Confidence 99999999999999999999999999999999999999988776543445544321 24678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||+++++ .+.+.+..... .+.++++.|.++..+|+.... ++++++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 241 r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 318 (389)
T 1gd9_A 241 RLGFVAAPS-WIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGA 318 (389)
T ss_dssp CCEEEECCH-HHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBT
T ss_pred ceEEEEECH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCee
Confidence 999999965 44444443322 345788999999999987532 34678888999999999999999989888888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++... . +..++++.+++++||.+.||+.|+..+++++||+++. +++++++++++|++++++.
T Consensus 319 ~~~~~~~~~~~----~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 319 FYIFPRIRDTG----L-TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp TEECCBCGGGT----C-CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeccCCC----C-CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 99999987410 1 1235777777677999999998876567899999996 9999999999999998763
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-46 Score=379.32 Aligned_cols=360 Identities=21% Similarity=0.318 Sum_probs=286.8
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i 114 (477)
..++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++.+.+| +.+++ ++|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~ia~~~~~~~g--~~~~~~~~v 102 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR-----------EDTHGYSTSRGIPRLRRAISHWYRDRYD--VQIDPESEA 102 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC--------------------CTTCCHHHHHHHHHHHHHHHC--CCCCTTTSE
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCcCE
Confidence 446899999988764 46677766664211 0134688778999999999999977666 44577 799
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+++|.+|+++|++++++ ++++
T Consensus 103 ~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~ 175 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIA-GAQVRSVPLVPGIDFFNELERAIRESIP------KPRM 175 (412)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHH-TCEEEEEECSTTSCHHHHHHHHHHTEES------CCSE
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHhccc------CceE
Confidence 99999999999999999999999999999999999888877 9999999987655777888998887742 7889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|
T Consensus 176 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 176 MILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG----AKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----GGGTEEEEEECC-CCSCTT
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccC----ccCcEEEEecCccccCCcc
Confidence 999999999999999999999999999999999999999988776654455554421 1467899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||+++++ .+.+.+..... .+.++.++|.++..+|++. ++++++.+++++++++.+.+.|++.|+++..+.+
T Consensus 252 ~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 327 (412)
T 2x5d_A 252 WRIGFMVGNP-ELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKA 327 (412)
T ss_dssp SCCEEEEECH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSB
T ss_pred cceEEEEcCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCe
Confidence 9999999954 44444443322 3457889999998888763 2357778888999999999999988988888888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
|+|+|++++..... .+..+++..+++++||.+.||+.|+..+++++||+++. +++++++++++|++++++..
T Consensus 328 g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 328 SMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp SSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 99999999743210 11235777787777999999999876567899999997 89999999999999997643
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=384.37 Aligned_cols=346 Identities=22% Similarity=0.321 Sum_probs=276.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCC----eEEEcCCCccchHHHHhh
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGD----AFLVPSPYYAAFDRDLSW 154 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd----~vlv~~P~y~~~~~~~~~ 154 (477)
...|++..|.+++|++||+|+.+.+| ++.+++++|++|+|+++|+.+++.+|+++|| .|+++.|+|+.|...++.
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~ 200 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHH
Confidence 45799999999999999999987763 1556899999999999999999999999875 999999999999988887
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |.++++++++++++|.+|+++|++++++... +.++++|+++||+||||.+++.+++++|+++|+++|++||+||+|.
T Consensus 201 ~-g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~ 278 (498)
T 3ihj_A 201 L-DAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 278 (498)
T ss_dssp T-TCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred c-CCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence 7 9999999999888899999999999986532 2368999999999999999999999999999999999999999999
Q ss_pred ccccCCC-CcccHHHhhhhccC---CCCcEEEEecCCccc-CCCCceEEEEEe--CCHHHHHHHHHh-cccCCCchHHHH
Q 011801 235 ATVFSSP-KFTSVAEVIQEMDC---NRDLIHIIYSLSKDM-GLPGFRVGIVYS--FNDTVVNCGRKM-SSFGLVSSQTQY 306 (477)
Q Consensus 235 ~~~~~~~-~~~s~~~~~~~~~~---~~~~viiv~SlSK~~-g~~G~RvG~i~~--~~~~i~~~~~~~-~~~~~vs~~~q~ 306 (477)
.++|++. .+.++..+..+.+. ...++++++||||.+ |++|+|+||++. .++.+.+.+.+. ..+...+.+.|.
T Consensus 279 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~ 358 (498)
T 3ihj_A 279 DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQA 358 (498)
T ss_dssp TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHH
Confidence 9888764 66777776542210 123578999999999 899999999984 455565555443 344556789999
Q ss_pred HHHHhcCC-----hhh--HHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhh------ccCchHH
Q 011801 307 LLASMLSD-----DEF--VDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLK------EKTLEGE 372 (477)
Q Consensus 307 ~~~~~L~~-----~~~--~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~------~~~~~~e 372 (477)
++..++.+ +.+ ..+...+.+++++++++.+.+.|.++ |+++.++++|+|+|++++.... ......+
T Consensus 359 a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~ 438 (498)
T 3ihj_A 359 AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPD 438 (498)
T ss_dssp HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHH
T ss_pred HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcH
Confidence 99999975 222 02234567788999999999999998 9999999999999987642111 0112233
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..++..+++++||.+.||+.|+. .++++||++|+ .+++++++++++|++++++..
T Consensus 439 ~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 439 MFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp HHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHH
Confidence 33467788888999999999985 45679999997 689999999999999997643
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=381.74 Aligned_cols=363 Identities=19% Similarity=0.328 Sum_probs=295.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-. .+ .....|++..|.+++|+++|+++++.+| +.+++ ++|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~------~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~~i~ 95 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVS------GD----FMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 95 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHH------SC----GGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHh------CC----CccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCcEE
Confidence 36899999998764 4556666555211 00 0245798888999999999999998777 44667 6999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC----------CCCcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI----------SNNFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~----------~~~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++. .++|.+|+++|++++++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~- 173 (422)
T 3fvs_A 96 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS- 173 (422)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-
T ss_pred EECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHc-CCEEEEEecccccccccccccccCCCCCHHHHHhhcCC-
Confidence 9999999999999999999999999999999999888877 99999999875 24788999999988753
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..+++++++|
T Consensus 174 -----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S 244 (422)
T 3fvs_A 174 -----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG----MWERTLTIGS 244 (422)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----TGGGEEEEEE
T ss_pred -----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc----ccCcEEEEec
Confidence 7999999999999999999999999999999999999999999998888766666655432 3478899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-----DEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-----~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
+||.+|++|+|+||++++++.+ ..+.... ..+.++++.|.++..+|.+ ..+ +.++++.+++++++++.+.+
T Consensus 245 ~sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 322 (422)
T 3fvs_A 245 AGKTFSATGWKVGWVLGPDHIM-KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRDHMIR 322 (422)
T ss_dssp HHHHHTCGGGCCEEEECCHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCccceEEEEEeCHHHH-HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999966544 4333322 2345788999998888864 112 44577888999999999999
Q ss_pred HHhhCCCeEecCCceEEEEeeccchhhccC-------chHHHHHHHHHHHhcCeEEeCCCCCCC-----CCCCEEEEEec
Q 011801 339 GLEQVGINCLKSNAGLFFWMDLRHLLKEKT-------LEGEIALWRTIVNDVKLNVSPGSSFQC-----TEPGWFRVCFA 406 (477)
Q Consensus 339 ~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~-------~~~e~~l~~~ll~~~gI~v~pg~~f~~-----~~~~~~Rl~~~ 406 (477)
.|++.|+.+..+.+|+|+|++++....... .....+++..+++++||.+.||+.|+. .+++++|++++
T Consensus 323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 402 (422)
T 3fvs_A 323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV 402 (422)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC
T ss_pred HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec
Confidence 999999998889999999999975321110 000336788888888999999999864 35789999999
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 011801 407 NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 407 ~~~~e~l~~~l~~l~~~~~~ 426 (477)
. +++++++++++|++++++
T Consensus 403 ~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 403 K-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp C-CHHHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHHHhh
Confidence 6 999999999999998864
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=378.42 Aligned_cols=353 Identities=22% Similarity=0.341 Sum_probs=287.5
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++.+.+| +.+++ ++|+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~v~ 113 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTI-----------PENQKYGAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVC 113 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTC-----------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 45899999998764 45666666553110 1234688878999999999999977666 44566 7999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++. ++|.+|+++|+++++. ++++|
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 185 (404)
T 2o1b_A 114 ILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLA-DGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLI 185 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHT-TCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999888876 99999999875 5788999999998864 68999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+.. ..+++++++||||.+|++|+
T Consensus 186 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~----~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASEN----GKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTT----HHHHEEEEEESTTTTTCGGG
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCC----CCCCEEEEEecchhccCchh
Confidence 999999999999999999999999999999999999999877755 2344443321 13678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+.... ..+.++.+.|.++..+|++. +.++++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 261 r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 336 (404)
T 2o1b_A 261 RVGFAVGNKD-MIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGG 336 (404)
T ss_dssp CCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBS
T ss_pred heEeEecCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcc
Confidence 9999999554 444444332 22457889999998888763 44678888899999999999999999998888899
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++...+ ..++++.+++++||.+.||+.|+...++++||+++. +++++++++++|+++++++
T Consensus 337 ~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 337 IYVWLETPPGYD------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp SEEEEECCTTCC------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGGG
T ss_pred eEEEEeCCCCCC------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhh
Confidence 999999974221 225777788777999999999875557899999996 8899999999999988763
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=380.06 Aligned_cols=359 Identities=21% Similarity=0.335 Sum_probs=291.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++++.+| +.+++ ++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~la~~~~~~~~--~~~~~~~~i~ 89 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFI-----------DNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEIL 89 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTC-----------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------ccccCCCCCCChHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 47899999988764 45566666553110 1345798888999999999999998777 45677 8999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC---------CCCcccCHHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI---------SNNFKITREALEAAYERAQ 186 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~---------~~~f~i~~~~l~~~~~~~~ 186 (477)
+|+|+++|+..++.+++++||.|+++.|+|+.+...++.. |.+++.++++. ..+|.+|++++++++++
T Consensus 90 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-- 166 (410)
T 3e2y_A 90 VAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMA-GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-- 166 (410)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT--
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEeccccccccccccccCCcCCHHHHHhhcCC--
Confidence 9999999999999999999999999999999999888877 99999999863 24678999999988753
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+.. ..+++++++||
T Consensus 167 ----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~ 238 (410)
T 3e2y_A 167 ----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPG----MWERTITIGSA 238 (410)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----CGGGEEEEEEH
T ss_pred ----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCC----ccCeEEEEecc
Confidence 7999999999999999999999999999999999999999999998887766666655532 45789999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-----DEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-----~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
||.+|++|+|+||++++++.+ ..+.... ..+.++++.|.++..+|.+ ..+ +.++++.+++++++++.+.+.
T Consensus 239 sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 316 (410)
T 3e2y_A 239 GKTFSVTGWKLGWSIGPAHLI-KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDRMVRL 316 (410)
T ss_dssp HHHSSCGGGCCEEEECCHHHH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceEEEEEECHHHH-HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999966544 4333332 2345788999998888863 111 345778888999999999999
Q ss_pred HhhCCCeEecCCceEEEEeeccchhhccC-----chHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccCC
Q 011801 340 LEQVGINCLKSNAGLFFWMDLRHLLKEKT-----LEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANMD 409 (477)
Q Consensus 340 L~~~gi~~~~~~~g~~~~~~l~~~~~~~~-----~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~~ 409 (477)
|++.|+.+..+++|+|+|++++....... ...+.+++..+++++||.+.||+.|+.. +++++||+++. +
T Consensus 317 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~ 395 (410)
T 3e2y_A 317 LNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK-K 395 (410)
T ss_dssp HHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-C
T ss_pred HHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-C
Confidence 99999999999999999999975322110 1123467788888889999999998753 35899999986 9
Q ss_pred HHHHHHHHHHHHHH
Q 011801 410 DDTLQVALNRIAAF 423 (477)
Q Consensus 410 ~e~l~~~l~~l~~~ 423 (477)
++++++++++|+++
T Consensus 396 ~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 396 DSTLDAAEEIFRAW 409 (410)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999763
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=375.70 Aligned_cols=359 Identities=19% Similarity=0.313 Sum_probs=291.2
Q ss_pred cccccccccccc-----ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 38 GGVIQLGLAENQ-----LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 38 ~~~i~l~~~~n~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
.++|+|+.+... .+++.+.+.+.+.-. -.....|++..|.+++|+++|+++++. + +.++++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~-----------~~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~~ 119 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALD-----------SGKYNGYAPSIGFLSSREEIASYYHCP-E--APLEAK 119 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHH-----------HCCSSSCCCTTCCHHHHHHHHHHHCBT-T--BCCCGG
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHh-----------cCcCCCCCCCCCcHHHHHHHHHHHhhc-C--CCCChH
Confidence 368999988742 244556665554210 012347888889999999999999864 3 456789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++|+++++.++.++||+|+++.|+|+++...++.. |.+++.++++..++|.+|+++|++++++ ++
T Consensus 120 ~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~ 192 (427)
T 3dyd_A 120 DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESM-GIEVKLYNLLPEKSWEIDLKQLEYLIDE------KT 192 (427)
T ss_dssp GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHSSCCT------TE
T ss_pred HEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc------CC
Confidence 9999999999999999999999999999999999999888877 9999999987767889999999988754 68
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. ....+++++||||.||+
T Consensus 193 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~-----~~~~vi~~~S~sK~~~~ 267 (427)
T 3dyd_A 193 ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS-----TDVPILSCGGLAKRWLV 267 (427)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC-----SSCCEEEEEESTTTSSC
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC-----CCCcEEEEeeccccCCC
Confidence 8999999999999999999999999999999999999999999888776666665542 23568889999999999
Q ss_pred CCceEEEEEeCC------HHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 273 PGFRVGIVYSFN------DTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 273 ~G~RvG~i~~~~------~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
+|+|+||+++++ +.+...+... ...+..+++.|.++..+|++.. ..++++.+++++++++.+.+.|+++ |
T Consensus 268 ~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g 345 (427)
T 3dyd_A 268 PGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALAAIPG 345 (427)
T ss_dssp GGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999875 3455444433 2345588899999999997422 3457778889999999999999998 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+..+++|+|+|++++...... .....+++..+++++||.+.||+.|+. ++++||+++ .+++++++++++|++++
T Consensus 346 ~~~~~p~~g~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~l~~~l 421 (427)
T 3dyd_A 346 LRPVRPSGAMYLMVGIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRIQEFC 421 (427)
T ss_dssp EEEECCSBTTEEEEEECGGGCTT-CSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred ceecCCCeeEEEEEecCHhhcCC-CCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHHHHHHHHHH
Confidence 88888899999999887321111 112336788888788999999998864 789999998 59999999999999999
Q ss_pred hhhh
Q 011801 425 QQDK 428 (477)
Q Consensus 425 ~~~~ 428 (477)
++.+
T Consensus 422 ~~~~ 425 (427)
T 3dyd_A 422 EQHY 425 (427)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8754
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=369.73 Aligned_cols=349 Identities=22% Similarity=0.350 Sum_probs=280.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~v~ 95 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLE------------TDALGYTVALGLPALRQRIARLYGEWYG--VDLDPGRVV 95 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999998886 3546665554211 1235788888999999999999998777 457789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+++|.+|+++|+++ ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v 165 (391)
T 3h14_A 96 ITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRAL-GLVPVDLPTAPENRLQPVPADFAGL---------DLAGL 165 (391)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECCGGGTTSCCHHHHTTS---------CCSEE
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHhc---------CCeEE
Confidence 9999999999999999999999999999999999888877 9999999998777889999988764 67899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++.. .+... ..+++++++|+||.+|++|+
T Consensus 166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~-------~~~~~i~~~s~sK~~g~~G~ 237 (391)
T 3h14_A 166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA-VTALE-------LTDECYVINSFSKYFSMTGW 237 (391)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCGGG-------TCSSSEEEEESSSTTCCTTS
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC-cChhh-------cCCCEEEEEechhccCCccc
Confidence 99999999999999999999999999999999999999988776643 33332 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHh-cc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCc
Q 011801 276 RVGIVYSFNDTVVNCGRKM-SS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNA 352 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~-~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~ 352 (477)
|+||++++++.+. .+.+. .. .+.++.+.|.++.++|.. ..++++.+++++++++.+.+.|++.|+.. ..+.+
T Consensus 238 r~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 312 (391)
T 3h14_A 238 RVGWMVVPEDQVR-VVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDG 312 (391)
T ss_dssp CCEEEECCGGGHH-HHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCB
T ss_pred eeEEEEeCHHHHH-HHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCe
Confidence 9999999766443 33332 22 234778899998888874 34578888899999999999999887654 56788
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++|+|++++.... +..++++.+++++||.++||+.|+. ..++++|++++. +++++++++++|+++++++.
T Consensus 313 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 313 AFYVYADVSDLTD-----DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp TTEEEEECTTTCS-----CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEecCccCC-----CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhc
Confidence 8999999874211 1235778888878999999999986 457899999997 89999999999999998744
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=365.91 Aligned_cols=345 Identities=16% Similarity=0.201 Sum_probs=281.4
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
++ ++|+|+.++++++ ++.+.+.+.+.. .....|++..|.+++|+++|+++.+.+| +.+++++|
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i 85 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNHT-------------HSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENEL 85 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTTG-------------GGGGSCCCTTCCHHHHHHHHHHHHHHHS--CCCCGGGE
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHhh-------------hhcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHE
Confidence 34 7899999998885 466777776631 2456899888999999999999987766 34578999
Q ss_pred EEeCChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 115 VMGGGATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
++|+|+++++.+++.++.++ ||.|+++.|+|+++...++.. |.+++.++++..+++.+ ++++++.+ ++
T Consensus 86 ~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~l~~~~~~------~~ 155 (376)
T 3ezs_A 86 ISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI-KAKSLLMPLTKENDFTP---SLNEKELQ------EV 155 (376)
T ss_dssp EEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTSCC---CCCHHHHH------HC
T ss_pred EECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHc-CCEEEEcccCCCCCcch---hHHhhhcc------CC
Confidence 99999999999999999999 999999999999999888877 99999999876555554 56666654 67
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhcc-CCCCcEEEEecCCcccC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD-CNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~-~~~~~viiv~SlSK~~g 271 (477)
++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..+......+.+ ...+++++++||||.+|
T Consensus 156 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 234 (376)
T 3ezs_A 156 DLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSS 234 (376)
T ss_dssp SEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTT
T ss_pred CEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhccC
Confidence 8999999999999999999999999999999999999999999877663 345444321000 02478899999999999
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
++|+|+||+++++ .+.+.+..... .+.++++.|.++..+|.+.++ +++.+++++++++.+.+.|+ ++. .
T Consensus 235 ~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~l~--~~~--~ 305 (376)
T 3ezs_A 235 APGLRSGFIAGDS-RLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRH----AEFFRNIYANNLKLARKIFK--NTL--I 305 (376)
T ss_dssp CGGGCCEEEEECH-HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHH----HHHHHHHHHHHHHHHHHHST--TCC--C
T ss_pred CccceeEEEeeCH-HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHhc--CCC--C
Confidence 9999999999954 45454444322 234788999999999987543 67788899999999999998 665 6
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC--CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ--CTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~--~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|+|+|++++. ..++++.+++++||.+.||+.|+ ...++++||+++. +++++++++++|++++++
T Consensus 306 ~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 306 YPYSFYVYLPVQN---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp CSBSSEEEEECSC---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHHCC
T ss_pred CCcceEEEEECCC---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 6788999999971 12577777776799999999998 4467899999986 999999999999999865
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=375.29 Aligned_cols=365 Identities=19% Similarity=0.268 Sum_probs=290.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i 114 (477)
+.++|+|+.+.+.++ ++.+.+.+.+.-... . .....|++..|..++|+++|+++.+.+| +.++++ +|
T Consensus 36 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~----~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v 104 (429)
T 1yiz_A 36 QYKPLNLGQGFPDYHAPKYALNALAAAANSP-----D----PLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEV 104 (429)
T ss_dssp HHCCEECCSSSCSSCCCHHHHHHHHHHHTCS-----C----GGGGSCCCSSCCHHHHHHHHHHHHHHHT--SCCCTTTSE
T ss_pred cCCEEEecCCCCCCCCCHHHHHHHHHHHhcc-----c----cCccCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcCCE
Confidence 346899999987653 455666555421100 0 0245788878899999999999987666 446788 99
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCC--------CcccCHHHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISN--------NFKITREALEAAYERAQ 186 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~--------~f~i~~~~l~~~~~~~~ 186 (477)
++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++..+ +|.+|+++|++++++
T Consensus 105 ~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-- 181 (429)
T 1yiz_A 105 LVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE-- 181 (429)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT--
T ss_pred EEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCcccccccccccCcccCHHHHHHHhcc--
Confidence 99999999999999999999999999999999999888876 9999999987643 678999999988753
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. ..++++++.|+
T Consensus 182 ----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~s~ 253 (429)
T 1yiz_A 182 ----KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG----MWERTITIGSA 253 (429)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTT----TGGGEEEEEEH
T ss_pred ----CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccC----CcCceEEEecc
Confidence 7899999999999999999999999999999999999999999998887655555544321 24678999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-----DEFVDNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-----~~~~~~~~~~~~~~l~~r~~~l~~~ 339 (477)
||.+|++|+|+||++++++ +.+.+.... ..+.++++.|.++..+|++ ..+ ++++++.+++++++++.+.+.
T Consensus 254 sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 331 (429)
T 1yiz_A 254 GKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMASF 331 (429)
T ss_dssp HHHHTCGGGCCEEEESCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcceEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999654 444443322 2344788899988888876 322 445788888999999999999
Q ss_pred HhhCCCeEecCCceEEEEeeccchhh------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccC
Q 011801 340 LEQVGINCLKSNAGLFFWMDLRHLLK------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANM 408 (477)
Q Consensus 340 L~~~gi~~~~~~~g~~~~~~l~~~~~------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~ 408 (477)
|++.|+.+..+.+|+|+|++++.... ........++++.+++++||.+.||+.|+.. .++++||+++.
T Consensus 332 L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~- 410 (429)
T 1yiz_A 332 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK- 410 (429)
T ss_dssp HHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS-
T ss_pred HHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC-
Confidence 99889998888889999999985310 0000123367777887789999999888642 26899999996
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011801 409 DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~ 426 (477)
+++++++++++|++++++
T Consensus 411 ~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 411 KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 899999999999998753
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=367.77 Aligned_cols=348 Identities=20% Similarity=0.269 Sum_probs=289.8
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++++++ ++.+.+.+.+.-. .....|++ .| .++|+++|+++++.+| +.+++++|+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~-~~-~~lr~~la~~~~~~~~--~~~~~~~i~ 85 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQ------------REAFGYQP-DG-SLLSQATAEFYADRYG--YQARPEWIF 85 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHH------------TTCCSSCC-SS-CCHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHH------------cCCCCCCC-CC-HHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999998875 4556666554210 12457888 77 9999999999998777 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|++.++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ +|+++|++++++ +++++
T Consensus 86 ~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~v 154 (377)
T 3fdb_A 86 PIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSAT-QREGIFIDATGG----INLHDVEKGFQA------GARSI 154 (377)
T ss_dssp EESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHH-TCCEEEEECTTS----CCHHHHHHHHHT------TCCEE
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEEccCCCC----CCHHHHHHHhcc------CCCEE
Confidence 9999999999999999999999999999999999888877 999999998753 899999999875 68899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ ..+.++..+. ..+++++++||||.+|++|
T Consensus 155 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-----~~~~~i~~~s~sK~~g~~G 229 (377)
T 3fdb_A 155 LLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDT-----AASVCITITAPSKAWNIAG 229 (377)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHH-----HHHHEEEEECSTTTTTCGG
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHcc-----CCCcEEEEEeChHhccCcc
Confidence 999999999999999999999999999999999999999988876 4445544332 1367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
+|+||+++.++.+.+.+..... .+.++++.|.++..+|.+. ++++++.+++++++++.+.+.|++. |+++..+
T Consensus 230 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM 306 (377)
T ss_dssp GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC
T ss_pred hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 9999999877777666655432 2457889999988888753 3557888899999999999999985 8999999
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+++++|++++...... +++..+++++||.++||+.|+...++++|++++. +++++++++++|++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~------~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 307 QATYLMWIDFRDTTIEG------SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp SBCSEEEEECTTSCCCS------CHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEECcccCCCH------HHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 99999999998531111 3677788878999999999987678899999996 899999999999999865
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=367.24 Aligned_cols=347 Identities=21% Similarity=0.402 Sum_probs=278.3
Q ss_pred Cccccccccccccc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+.+.+ +++.+.+.+.+.-.. + .......|++..|.+++|+++++++++.+| +.+++++|+
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~ 103 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTD------Y--DSVALHGYTSAQGDVETRAAIAEFLNNTHG--THFNADNLY 103 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHH------S--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhc------C--CccccCCcCCCCCcHHHHHHHHHHHHHHhC--CCCChHHEE
Confidence 35689999886554 345566655542100 0 001145798888999999999999998877 456889999
Q ss_pred EeCChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|+.+++.+++++| |.|++++|+|+++...++.. |.+++.++++. ++|.+|+++|++++++ ++++
T Consensus 104 ~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~ 175 (398)
T 3ele_A 104 MTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAA-GARLVEVPADT-EHFQIDFDALEERINA------HTRG 175 (398)
T ss_dssp EESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCT-TTSSCCHHHHHHTCCT------TEEE
T ss_pred EccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhCc------CCCE
Confidence 99999999999999999999 99999999999999888877 99999999875 4789999999998853 7999
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHh------cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFIND------KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~------~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
|++++|+||||.+++.+++++|+++|++ +|++||+||+|+++.+++........ ..+++++++|+||
T Consensus 176 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~sK 248 (398)
T 3ele_A 176 VIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK-------YYDNTLVCYSYSK 248 (398)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG-------TCSSEEEEEESTT
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh-------hcCCeEEEEehhh
Confidence 9999999999999999999999999999 99999999999998776644333222 3478899999999
Q ss_pred ccCCCCceEEEEEeCCHH-----HHHHHHH---hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIVYSFNDT-----VVNCGRK---MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGL 340 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~-----i~~~~~~---~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L 340 (477)
.+|++|+|+||++++++. +...... .......+.+.|.++..++.+.+. +++++++++.+.+.|
T Consensus 249 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--------~~~~~~~~~~l~~~L 320 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGD--------INAYKENRDLLYEGL 320 (398)
T ss_dssp TSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCC--------HHHHHHHHHHHHHHH
T ss_pred cCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHH--------HHHHHHHHHHHHHHH
Confidence 999999999999997763 2222222 122344677899998888877542 356677888888999
Q ss_pred hhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 341 EQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 341 ~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
++.|+++..+.+|+|+|++++.. + ..++++. +.++||.++||+.|+. ++++||+++ .+++++++++++|
T Consensus 321 ~~~g~~~~~~~~~~~~~~~~~~~-~------~~~~~~~-l~~~gi~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~l 389 (398)
T 3ele_A 321 TRIGYHCFKPDGAFYMFVKALED-D------SNAFCEK-AKEEDVLIVAADGFGC--PGWVRISYC-VDREMIKHSMPAF 389 (398)
T ss_dssp HHHTCCEECCSBSSEEEEECSSS-C------HHHHHHH-HHTTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHH
T ss_pred HHcCCeecCCCeeEEEEEEcCCC-C------HHHHHHH-HHHCCEEEeCccccCC--CCeEEEEec-CCHHHHHHHHHHH
Confidence 88899999999999999998742 1 2245554 4577999999998864 689999998 5999999999999
Q ss_pred HHHHhhh
Q 011801 421 AAFVQQD 427 (477)
Q Consensus 421 ~~~~~~~ 427 (477)
++++++.
T Consensus 390 ~~~l~~~ 396 (398)
T 3ele_A 390 EKIYKKY 396 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=368.34 Aligned_cols=349 Identities=19% Similarity=0.287 Sum_probs=282.3
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+.+.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++.+.+| +.++++ +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~~ 96 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 96 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEE
Confidence 5799999887653 4556666554210 0135788878899999999999987666 446788 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+ +|.+|+++|++++++ ++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~ 168 (386)
T 1u08_A 97 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQPP-HFRVDWQEFAALLSE------RTRLVI 168 (386)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCTT-TCCCCHHHHHHHCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeecCcc-cCcCCHHHHHHhhcc------cCEEEE
Confidence 999999999999999999999999999999999888876 999999998653 578999999988743 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++|+||||.+++.+++++|+++|+++|+++|+||+|+++.|++..+.++..+.. ..+++++++|+||.+|++|+|
T Consensus 169 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~r 244 (386)
T 1u08_A 169 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ----LRERAVAVSSFGKTYHMTGWK 244 (386)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH----HHTTEEEEEEHHHHTTCGGGC
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC----ccCcEEEEecchhhcCCcccc
Confidence 9999999999999999999999999999999999999988887655455544321 136789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 277 VGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+||++++++ +.+.++... ..+.++++.|.++..+|++. +.++++.+++++++++.+.+.|++.|+++..+.+|+
T Consensus 245 ~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 320 (386)
T 1u08_A 245 VGYCVAPAP-ISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTY 320 (386)
T ss_dssp CEEEECCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred eEEEEcCHH-HHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceE
Confidence 999999654 444444332 23447788898888888753 345778888999999999999999999988888899
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
|+|++++.... .+..++++.+++++||.+.||+.|.. ..++++||+++. +++++++++++|++
T Consensus 321 ~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 99999975300 11235777788778999999998864 356899999986 89999999999864
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=367.59 Aligned_cols=347 Identities=17% Similarity=0.250 Sum_probs=280.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~ 115 (477)
.++|+|+.+++.++ ++.+.+.+.+.-.. .....|++..|..++|+++|+++.+.+| +.++++ +|+
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~l~~~ia~~~~~~~g--~~~~~~~~v~ 91 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALND-----------PTTYGYCLKSCTLPFLEEAARWYEGRYG--VGLDPRREAL 91 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTC-----------GGGSSCCCHHHHHHHHHHHHHHHHHHHS--CCCCTTTSEE
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccEE
Confidence 46899999998764 45666666553210 1245687766889999999999977666 445676 999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+++++.++.++||.|+++.|+|+++...++.. |.+++.+++ .++|.+|+++|++++++ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~v 162 (376)
T 2dou_A 92 ALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVA-SLRTFLIPL--REDGLADLKAVPEGVWR------EAKVL 162 (376)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHT-TCEEEEECB--CTTSSBCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHc-CCEEEEeeC--CCCCCCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999888876 999999998 45788999999998864 68999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ..+...... ..+++++++||||.+|++|+
T Consensus 163 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 163 LLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE-APSPLALPG----AKERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC-CCCGGGSTT----GGGTEEEEEEHHHHHTCGGG
T ss_pred EECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCC----CCCcEEEEecchhhcCChhh
Confidence 9999999999999999999999999999999999999998777652 234333322 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+..... ...++.+.|.++..+|++. ++++++.+++++++++.+.+.|++. +.+..+.+|
T Consensus 238 r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 312 (376)
T 2dou_A 238 RLGFALGSEE-ALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-LSLLPPRAT 312 (376)
T ss_dssp CCEEEEECHH-HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBS
T ss_pred eeEEEecCHH-HHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCee
Confidence 9999998554 4444433322 2246889999999999873 4567888889999999999999988 888888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|+|++++...+ ..++++.++++ ||.+.||+.|+...++++||+++. +++++++++++|++++
T Consensus 313 ~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 313 MYLWGRLPEGVD------DLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp SEEEEECCTTCC------HHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCC------HHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 999999984221 12577777776 999999998875557899999986 8999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=369.51 Aligned_cols=363 Identities=20% Similarity=0.347 Sum_probs=285.4
Q ss_pred CCCccccccccccc----cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhc------cc
Q 011801 35 QNPGGVIQLGLAEN----QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGK------GR 103 (477)
Q Consensus 35 ~~~~~~i~l~~~~n----~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~------~~ 103 (477)
.++.++|+|+.+.. .+ +++.+.+.+.+.... .....|++..|..++|+++|+++++ .+
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~ 98 (416)
T 1bw0_A 30 PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS-----------QECNGYFPTVGSPEAREAVATWWRNSFVHKEEL 98 (416)
T ss_dssp CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT-----------TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTT
T ss_pred hcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC-----------CccCCcCCCCCCHHHHHHHHHHHHhhhcccccC
Confidence 44567899998863 23 445566665542100 1234688878999999999999983 13
Q ss_pred CCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 104 GGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 104 g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
| +.+++++|++|+|+++|+++++.+++++||.|+++.|+|+++...++.. |++++.++++.+++|.+|+++|+++++
T Consensus 99 ~--~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~ 175 (416)
T 1bw0_A 99 K--STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRRLKD 175 (416)
T ss_dssp G--GGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred C--CCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHc-CcEEEEeecCcccCCCCCHHHHHHHhc
Confidence 3 4567899999999999999999999999999999999999999888876 999999998765568899999998875
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC----CcccHHHhhhhccCCCCc
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP----KFTSVAEVIQEMDCNRDL 259 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~----~~~s~~~~~~~~~~~~~~ 259 (477)
+ ++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.|++. .+.++..+. ..++
T Consensus 176 ~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~-----~~~~ 244 (416)
T 1bw0_A 176 D------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE-----TTVP 244 (416)
T ss_dssp T------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC-----CSCC
T ss_pred c------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc-----CCCc
Confidence 3 688999999999999999999999999999999999999999999877665 444544331 2346
Q ss_pred EEEEecCCcccCCCCceEEEEEeCCH-----HHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 011801 260 IHIIYSLSKDMGLPGFRVGIVYSFND-----TVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRH 333 (477)
Q Consensus 260 viiv~SlSK~~g~~G~RvG~i~~~~~-----~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~ 333 (477)
+++++||||.++++|+|+||++++++ .+....+... ..+.++++.|.++..+|+... +.++++.++++++++
T Consensus 245 ~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~ 322 (416)
T 1bw0_A 245 RVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESA 322 (416)
T ss_dssp EEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHHH
Confidence 88999999999999999999998764 2332222221 234578899999999987532 345777888899999
Q ss_pred HHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHH
Q 011801 334 HNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDT 412 (477)
Q Consensus 334 ~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~ 412 (477)
+.+.+.|+++ |+.+..+.+|+|+|++++...-. ......+++..+++++||.++||+.|+. ++++||+++ .++++
T Consensus 323 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~e~ 398 (416)
T 1bw0_A 323 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEV 398 (416)
T ss_dssp HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHHH
T ss_pred HHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcC-CCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCHHH
Confidence 9999999987 88877778889999988642100 0012235777787778999999998864 679999997 58999
Q ss_pred HHHHHHHHHHHHhhhh
Q 011801 413 LQVALNRIAAFVQQDK 428 (477)
Q Consensus 413 l~~~l~~l~~~~~~~~ 428 (477)
+++++++|++++++.+
T Consensus 399 l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 399 YREAVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999997643
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=365.42 Aligned_cols=356 Identities=17% Similarity=0.231 Sum_probs=292.6
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
+++|+|+.+.+.++ ++.+.+.+.+.-. +....|++. ..++++++++++.+.+| +.+++++|++
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~i~~ 90 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLK------------VAAFGYESV--PAEYYKAVADWEEIEHR--ARPKEDWCVF 90 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHT------------TCCCCCBCC--CHHHHHHHHHHHHHHHS--CCCCGGGEEE
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHh------------cCcCCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 47899999987774 4666666655311 123457655 58999999999998777 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++ ..++|.+|+++|++++++ .++++|
T Consensus 91 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v 164 (391)
T 3dzz_A 91 ASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGN-GRRVISSDLIYENSKYSVNWADLEEKLAT-----PSVRMM 164 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHT-TCEEEECCCEEETTEEECCHHHHHHHHTS-----TTEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHc-CCEEEEeeeeecCCceeecHHHHHHHHhc-----cCceEE
Confidence 999999999999999999999999999999999888877 9999999986 456788999999999863 289999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+.+..+.++..+..+ ..++++++.|+||.+|++|+
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~d~~i~~~s~sK~~g~~G~ 241 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWD---AKNWVVSLISPSKTFNLAAL 241 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTT---TGGGEEEEECSHHHHTCTTT
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCcc---ccCcEEEEEeChhhccccch
Confidence 999999999999999999999999999999999999999888777666666554210 14789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 276 RVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
|+||++++++.+.+.+... ...+..+++.|.++...|.+. +.++++.+++++++++.+.+.|++. |+++..+
T Consensus 242 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 318 (391)
T 3dzz_A 242 HAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDS 318 (391)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred hheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecc
Confidence 9999999766666655443 233457888888888777653 4457888889999999999999984 8999999
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++++|++++.... ...++++.+++++||.++||+.|+..+++++||+++. +++++++++++|++++++.
T Consensus 319 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 319 NASYLAWVDISALGM-----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CBSSEEEEECGGGCS-----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEehhhcCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 999999999985210 1235777777677999999999987777999999994 8999999999999999764
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=365.17 Aligned_cols=346 Identities=25% Similarity=0.434 Sum_probs=281.8
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~v~ 105 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 105 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 346899999988764 3555555544211 0124688878899999999999987666 445789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++.+++|.+|+++|++++++ ++++|
T Consensus 106 ~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 178 (389)
T 1o4s_A 106 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAV 178 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEE
T ss_pred EecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999999888876 9999999987545788999999988753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++ .+.++..+.. ..+++++++||||.+|++|+
T Consensus 179 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 253 (389)
T 1o4s_A 179 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSE----GFDRIVYINGFSKSHSMTGW 253 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCS----SSTTEEEEEESTTTTTCGGG
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCC----CCCcEEEEeechhhcCCccc
Confidence 999999999999999999999999999999999999999877765 3345555421 24788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||++++++ +.+.+..... .+.++++.|.++..+|.+. +++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 254 r~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 326 (389)
T 1o4s_A 254 RVGYLISSEK-VATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPEGA 326 (389)
T ss_dssp CCEEEECCHH-HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBS
T ss_pred ceEEEEeCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcc
Confidence 9999999654 4444443322 2447888999998999875 35667788889999999999889888888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|+|++++ .+ ..++++.+++++||.+.||+.|+. ++++||+++. +++++++++++|++++++
T Consensus 327 ~~~~~~~~--~~------~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 327 FYLFFKVR--GD------DVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLNS 388 (389)
T ss_dssp SEEEEECS--SC------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHTC
T ss_pred eEEEEeCC--CC------HHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 99999987 11 225777777677999999998864 5799999996 999999999999998864
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=369.09 Aligned_cols=328 Identities=17% Similarity=0.258 Sum_probs=266.6
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccC-------CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD-------PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD 151 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-------~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~ 151 (477)
...|++..|++++|++|++++.+.+| +..+ +++|++|+|+++|+.+++.++++|||.|++++|+|+++...
T Consensus 71 ~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 71 ALQYSPSAGIPELLSWLKQLQIKLHN--PPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp HTSCCCTTCCHHHHHHHHHHHHHHHC--CTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcC--CCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH
Confidence 45799999999999999999988777 3332 37999999999999999999999999999999999999998
Q ss_pred HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH------HhCCCeeEEEE-eCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 152 LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ------EASINIKGLII-TNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~------~~~~~~k~vii-~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
++.. |.++++++++.. .+|+++|++++++.. ..+.++++|++ ++||||||.+++.+++++|+++|+++|
T Consensus 149 ~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~ 224 (425)
T 2r2n_A 149 LHPL-GCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYD 224 (425)
T ss_dssp HGGG-TCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHc-CCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 8877 999999998642 489999999886311 01136788866 689999999999999999999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCch
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSS 302 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~ 302 (477)
++||+||+|+++.|++..+.++..+. ..+++++++||||.+| ||+|+||++++++ +.+.+.... ..+.++.
T Consensus 225 ~~li~De~~~~~~~~g~~~~~~~~~~-----~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 225 FLIIEDDPYYFLQFNKFRVPTFLSMD-----VDGRVIRADSFSKIIS-SGLRIGFLTGPKP-LIERVILHIQVSTLHPST 297 (425)
T ss_dssp CEEEEECTTGGGBSSSSCCCCTGGGC-----TTSCEEEEEESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHTTTCSSCH
T ss_pred CEEEEECCcccccCCCCCCCCccccC-----CCCCEEEEccchhhcc-CccceEEEecCHH-HHHHHHHHHHHhcCCCCH
Confidence 99999999999888766556655542 3468999999999999 9999999999665 444443332 2345788
Q ss_pred HHHHHHHHhcCC---hhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CC-eEecCCceEEEEeeccchhhccCchHHHHHH
Q 011801 303 QTQYLLASMLSD---DEFVDNFLVETSKRLAKRHHNFTKGLEQV--GI-NCLKSNAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 303 ~~q~~~~~~L~~---~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi-~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
++|.++..+|++ +.+ .+++++.+++++++++.+.+.|++. |+ .+..+.+|+|+|++++...+. .+++
T Consensus 298 ~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~------~~~~ 370 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDV------KELI 370 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCC------HHHH
T ss_pred HHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCH------HHHH
Confidence 999999999976 334 6778888999999999999999884 76 466788999999999853221 1333
Q ss_pred HHHHHhcCeEEeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
...+.++||.+.||+.|+.. ..+++||+++..+++++++++++|++++++
T Consensus 371 ~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 371 EEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp HTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 44455779999999999753 357999999856999999999999999865
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=374.67 Aligned_cols=354 Identities=17% Similarity=0.218 Sum_probs=284.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.... .........|++..|.++||+++|+++. +| +.+++++|+
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g--~~~~~~~i~ 136 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAG-------LATREGYSGYGAEQGQGALREAVASTFY--GH--AGRAADEIF 136 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHG-------GGGSCCCCCSTTTTCCHHHHHHHHHHHH--TT--TTCCGGGEE
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHh-------hccccCCCCCCCCCCcHHHHHHHHHHHH--cC--CCCCHHHEE
Confidence 346899999988774 45555555442110 0000123578888899999999999997 44 457789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE----------EEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ----------IVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~----------~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++++.++ .+++++||.|++++|+|+++...++.. |.+ ++.++++..+++..+++++
T Consensus 137 ~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMM-GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp EESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHH-TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred EccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHc-CCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 999999999999 888899999999999999999888877 988 9999988766777765432
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
.++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++....++..+.. ..+++++++|
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s 279 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG----ADEVAIETCS 279 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT----GGGTEEEEEE
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC----CCCcEEEEec
Confidence 37899999999999999999999999999999999999999999998777654455554422 2467899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHH-------HHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVV-------NCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNF 336 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~-------~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l 336 (477)
|||.+|++|+|+||++++++.+. ....+. ..+..+++++|.++..+|.+.. ..++++.+++++++++.+
T Consensus 280 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 357 (449)
T 3qgu_A 280 FSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQIL 357 (449)
T ss_dssp CSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999776542 122222 2344578899999999998743 356788899999999999
Q ss_pred HHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHH
Q 011801 337 TKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVA 416 (477)
Q Consensus 337 ~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~ 416 (477)
.+.|++.|+++..+.+|+|+|++++ ..+ ..++++.+++++||.+.||+.|+..+++++||+++. ++++++++
T Consensus 358 ~~~L~~~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~ 429 (449)
T 3qgu_A 358 KTTFTEMGFSVYGGDDAPYIWVGFP-GKP------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEA 429 (449)
T ss_dssp HHHHHHTTCCEEESSSSSEEEEECT-TSC------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHCCCeeeCCCCeeEEEEECC-CCC------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHH
Confidence 9999999999998888999999998 221 235778888888999999999987778999999875 99999999
Q ss_pred HHHHHHHHhhhh
Q 011801 417 LNRIAAFVQQDK 428 (477)
Q Consensus 417 l~~l~~~~~~~~ 428 (477)
+++|++++++.+
T Consensus 430 l~~l~~~~~~~~ 441 (449)
T 3qgu_A 430 VRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHhcC
Confidence 999999997644
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=367.85 Aligned_cols=358 Identities=17% Similarity=0.207 Sum_probs=287.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
|.++|+|+.+++.++ ++.+.+.+.+.-. .....|++. ..++|+++|+++.+.+| +.+++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~ 93 (399)
T 1c7n_A 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTGP--TEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (399)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeeeecCCCCCCCHHHHHHHHHHHh------------cCCCCCCCC--cHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 457899999988764 4566666655210 123467664 79999999999987666 346788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++ .+++|.+|+++|++++++ .++++
T Consensus 94 ~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~ 167 (399)
T 1c7n_A 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKA 167 (399)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEecccccCCCCEEEcHHHHHHHhcc-----CCCcE
Confidence 9999999999999999999999999999999999888876 9999999886 334688999999998862 27899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++|
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G 244 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ---LADKTITFTAPSKTFNIAG 244 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHTTEEEEECSHHHHTCGG
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcc---ccCcEEEEEeChhhccccc
Confidence 9999999999999999999999999999999999999999887766555555443210 0367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-c--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-S--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~~~ 349 (477)
+|+||++++++.+.+.+.... . ++.++.++|.++.++|.+. ++++++.+++++++++.+.+.|++ + |+.+..
T Consensus 245 ~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 321 (399)
T 1c7n_A 245 MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPL 321 (399)
T ss_dssp GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCC
T ss_pred hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEec
Confidence 999999997665555554432 2 2357888999888888643 345778888999999999999988 5 888888
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+++++|++++... . ...++++.+++++||.+.||+.|+...++++||+++. +++++++++++|++++++.+
T Consensus 322 ~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 322 IEGTYLQWIDFRALK----M-DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLK 394 (399)
T ss_dssp CSBSSEEEEECGGGC----C-CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEEEcccCC----C-CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHHH
Confidence 889999999997420 0 1225777777678999999998876567899999986 58999999999999997643
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=365.50 Aligned_cols=354 Identities=18% Similarity=0.372 Sum_probs=284.7
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+... .....|++..|..++|+++++++++.+| +.+++++|+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~ 94 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNIL 94 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 456899999988764 4555555544210 1134688888999999999999987766 445788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|++++|+|+++...++.. |.+++.++++..++|.+|+++|++++++ ++++|
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 167 (388)
T 1j32_A 95 VTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLL 167 (388)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999888876 9999999987555788999999998853 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++|+
T Consensus 168 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE---AYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHHTEEEEEESTTTTTCTTT
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcccc---ccCCEEEEeechhccCCccc
Confidence 999999999999999999999999999999999999999987776554555443210 02578999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA 352 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~ 352 (477)
|+||++++++ +.+.+..... ...++++.|.++..+|... ++++++.+++++++++.+.+.|++. |+++..+.+
T Consensus 245 r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 320 (388)
T 1j32_A 245 RVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred ceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCe
Confidence 9999999655 4444443322 2346788998888888643 2356778888999999999999988 888888888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+|+|++++.. .. ...++++.+++++||.+.||+.|+. ++++|++++. +++++++++++|++++++
T Consensus 321 ~~~~~~~~~~~----~~-~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~-~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 321 AFYMFPSIAKT----GR-SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp TTEECCBCGGG----TC-CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCC----CC-CHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 99999988742 01 1235777777767999999988864 6799999984 899999999999999865
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-44 Score=358.69 Aligned_cols=332 Identities=18% Similarity=0.227 Sum_probs=275.8
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+. ......|++..+ .++|+++|++++ +++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~v~~ 87 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQN-------------ANKAHLYPDDSM-IELKSTLAQKYK--------VQNENIII 87 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHH-------------GGGTTSCCCTTC-HHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCCCh-HHHHHHHHHHhC--------CCcceEEE
Confidence 56899999999985 45666666553 123567888776 999999999996 56889999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++.+++++||.|+++.|+|+.+...++.. |.+++.+++ ..+++ +|+++|++++++ ++++|+
T Consensus 88 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~-~~~~~-~d~~~l~~~l~~------~~~~v~ 158 (365)
T 3get_A 88 GAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQC-GAKCYKTQS-ITHNL-DEFKKLYETHKD------EIKLIF 158 (365)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHH-TCEEEECSS-SSCCH-HHHHHHHHHTTT------TEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEec-CCCCC-CCHHHHHHHhCC------CCCEEE
Confidence 999999999999999999999999999999999888887 999999998 23567 999999998863 899999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
+++|+||||.+++.+++++|+++| ++|+++|+||+|+++.| .+..+.+...... ..+++++++|+||.+|++|
T Consensus 159 ~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G 233 (365)
T 3get_A 159 LCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIK----EFDNVLYLGTFSKLYGLGG 233 (365)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH----HCTTEEEEEESSSTTSCTT
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhc----cCCCEEEEeecchHhcCcc
Confidence 999999999999999999999998 57999999999998765 4433345444443 3578899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
+|+||+++ ++.+.+.+......+.++.+.|.++..+|++.+ ++++.+++++++++.+.+.|++.|+++.++.+ .
T Consensus 234 ~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~ 307 (365)
T 3get_A 234 LRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDDE----FTEKTLENNFSQMELYKEFAKKHNIKIIDSYT-N 307 (365)
T ss_dssp TCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCSS-S
T ss_pred hheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCCCC-e
Confidence 99999999 555666665555555689999999999999753 47788889999999999999999998876655 6
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|+|++++.. + ..++.+.+.+ +||.++||+.|+ ++++|++++ +++++++++++|++++
T Consensus 308 ~~~~~~~~~-~------~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 308 FITYFFDEK-N------STDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEEEECSSS-C------HHHHHHHHHT-TTEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred EEEEECCCC-C------HHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 799999853 1 2256666654 599999999887 789999998 7999999999999876
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-44 Score=365.73 Aligned_cols=360 Identities=18% Similarity=0.262 Sum_probs=284.9
Q ss_pred cccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc-cCCCc
Q 011801 38 GGVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT-FDPDR 113 (477)
Q Consensus 38 ~~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~~~ 113 (477)
.++|+|+.+.+. .+.+.+.+++.+.... . ......|++..|.+++|+++|+++.+.+| +. +++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 111 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEK------E---YHYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDEDN 111 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHH------S---HHHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGGG
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhh------c---chhhcCCCCCCCCHHHHHHHHHHHHhccC--CCCCCccc
Confidence 368999876532 2456666665542100 0 01235788888999999999999966545 34 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh--CCC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA--SIN 191 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~--~~~ 191 (477)
|++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.+++.++++.+ .+|+++|++++++.... +.+
T Consensus 112 v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~ 187 (425)
T 1vp4_A 112 LIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQ 187 (425)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGG
T ss_pred EEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999999999999888876 999999998753 38999999998753211 236
Q ss_pred eeEE-EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 192 IKGL-IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 192 ~k~v-ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+++| ++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+. ..+++++++||||.+
T Consensus 188 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-----~~~~~i~~~s~sK~~ 262 (425)
T 1vp4_A 188 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-----GPERVVLLNTFSKVL 262 (425)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-----CTTTEEEEEESTTTT
T ss_pred ceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC-----CCCCEEEEecccccc
Confidence 8888 5799999999999999999999999999999999999998877665556666542 346789999999999
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhc-c-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-----
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMS-S-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----- 343 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~-~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----- 343 (477)
| +|+|+||+++++ .+.+.+.... . .+..++++|.++..+|++..+ ++++++.+++++++++.+.+.|++.
T Consensus 263 ~-~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 263 A-PGLRIGMVAGSK-EFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp C-GGGCEEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred c-cccceEEEeeCH-HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9 999999999964 4444443322 1 234688999999999986543 5678888899999999999999875
Q ss_pred CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 344 GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 344 gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
|+.+..+.+|+|+|++++...+.. ++++.++++ ||.+.||+.|+.. .++++||+++..+++++++++++|+
T Consensus 340 g~~~~~~~~g~~~~~~~~~~~~~~------~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~ 412 (425)
T 1vp4_A 340 GVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLR 412 (425)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTT------TTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHH
T ss_pred ceEEecCCccEEEEEEcCCCCCHH------HHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 688877888999999998532221 366777766 9999999988653 4689999998768999999999999
Q ss_pred HHHhhh
Q 011801 422 AFVQQD 427 (477)
Q Consensus 422 ~~~~~~ 427 (477)
+++++.
T Consensus 413 ~~l~~~ 418 (425)
T 1vp4_A 413 EVVLEY 418 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=363.87 Aligned_cols=352 Identities=14% Similarity=0.245 Sum_probs=282.2
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHH-HHHHHHHHHhcccCCCCccCCCcE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPE-FRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~-lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
+.++|+|+.+.+.++ ++.+.+++.+.-. .....|++. ..+ +|+++|+++++.+| +.+++++|
T Consensus 27 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~~lr~~la~~l~~~~g--~~~~~~~v 90 (390)
T 1d2f_A 27 TADLLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRW--KNDEFLAAIAHWFSTQHY--TAIDSQTV 90 (390)
T ss_dssp ---CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCS--CCHHHHHHHHHHHHHHSC--CCCCGGGE
T ss_pred CCCeeEeeecCCCCCCCHHHHHHHHHHHh------------CCCCCCCCC--ChHHHHHHHHHHHHHhcC--CCCCHHHE
Confidence 357899999988764 4566666655311 123467664 678 99999999987766 44678999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCee
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
++|+|+++|+++++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ ++|.+|+++|++++++ .+++
T Consensus 91 ~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~ 164 (390)
T 1d2f_A 91 VYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECK 164 (390)
T ss_dssp EEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEE
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHC-CCEEEEeecccCCCccccCHHHHHHHhcc-----CCCe
Confidence 99999999999999999999999999999999999888876 999999998754 3688999999998853 2789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. .. ... ++||||.+|++
T Consensus 165 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~-~d~-~~s~sK~~~~~ 238 (390)
T 1d2f_A 165 IMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR----GD-WAL-LTSGSKSFNIP 238 (390)
T ss_dssp EEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC----SS-EEE-EECSHHHHTCG
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch----hh-Hhh-ccCccHhhccc
Confidence 9999999999999999999999999999999999999999988777655566554421 11 023 89999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhc----ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeE
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMS----SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINC 347 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~----~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~ 347 (477)
|+|+||++++++.+.+.+.... .++.++.+.|.++.++|.+. ++++++.+++++++++.+.+.|++ + |+.+
T Consensus 239 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 315 (390)
T 1d2f_A 239 ALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFPELNW 315 (390)
T ss_dssp GGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred ChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 9999999997666655554332 34467888888888877642 345778888999999999999988 5 8888
Q ss_pred ecCCceEEEEeeccch-hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 348 LKSNAGLFFWMDLRHL-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 348 ~~~~~g~~~~~~l~~~-~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++.+|+++|++++.. .+ ..++++.+++++||.+.||+.|+...++++||+++. +++++++++++|++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 316 QIPQSTYLAWLDLRPLNID------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CCCSBCSEEEEECGGGCCC------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCccEEEEEEccccCCC------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 8888899999999753 11 225777777678999999999875557899999996 789999999999999875
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=369.85 Aligned_cols=356 Identities=21% Similarity=0.304 Sum_probs=284.3
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++.+.+| +.++++ +|++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~~ 91 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIA------------GGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLV 91 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEEE
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCCCCCceEEE
Confidence 5799999887753 4556666555210 0145788888899999999999987766 446787 9999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC-CCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS-NNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~-~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ ++|.+|+++|++++++ ++++|
T Consensus 92 t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (411)
T 2o0r_A 92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMA-GAHRVTVPLVPDGRGFALDADALRRAVTP------RTRAL 164 (411)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEE
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEeeccccccCCCCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999998888776 999999998653 3578999999998853 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++..+.++..+.. ..+++++++|+||.+|++|+
T Consensus 165 ~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 240 (411)
T 2o0r_A 165 IINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG----MAERTITISSAAKMFNCTGW 240 (411)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT----TGGGEEEEEEHHHHTTCTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccC----CCCCEEEEeechhhcCCccc
Confidence 99999999999999999999999999999999999999988777655455544321 24678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+||+++++ .+.+.+.... ..+..+++.|.++..+|+.. ++++++.+++++++++.+.+.|++.|+++..+.+|
T Consensus 241 r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g 316 (411)
T 2o0r_A 241 KIGWACGPA-ELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGT 316 (411)
T ss_dssp CEEEEECCH-HHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBS
T ss_pred eEEEEeeCH-HHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCee
Confidence 999999964 4444443322 12346778888888888643 45577888899999999999999889998888889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-----------EPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----------~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+|+|++++... . . +..++...+++++||.+.||+.|... .++++||+++. +++++++++++|++
T Consensus 317 ~~~~~~~~~~~-~--~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 317 YFLCADPRPLG-Y--D-DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEAIRRLSV 391 (411)
T ss_dssp SEEEEECGGGT-C--C-CHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHHHHHHGG
T ss_pred EEEEEecCCCC-C--C-CHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 99999997521 0 1 12357777887779999999988432 36799999986 89999999999999
Q ss_pred HHhhhh
Q 011801 423 FVQQDK 428 (477)
Q Consensus 423 ~~~~~~ 428 (477)
++++.+
T Consensus 392 ~~~~~~ 397 (411)
T 2o0r_A 392 LAERPA 397 (411)
T ss_dssp GGC---
T ss_pred HHhccC
Confidence 876543
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=367.48 Aligned_cols=353 Identities=15% Similarity=0.162 Sum_probs=283.5
Q ss_pred ccccccccccc-cccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc--
Q 011801 38 GGVIQLGLAEN-QLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-- 113 (477)
Q Consensus 38 ~~~i~l~~~~n-~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-- 113 (477)
.++|+|+.+++ .++. +.+ .+++...+. +.. .....|++..|.+++|+++|+++.+.. +.+++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~-~~~~a~~~~-------~~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~~~ 114 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFA-SSLDAMFND-------LTP-DEIFPYAPPQGIEELRDLWQQKMLRDN---PELSIDNMS 114 (430)
T ss_dssp TCSEECCCSSCEETTEECCC-HHHHTTBSS-------CCG-GGTSSCCCTTCCHHHHHHHHHHHHHHC---TTCCGGGBC
T ss_pred CCcEEeeeeeccCCCCchhh-HHHHHHHHh-------cCc-ccccccCCCCCCHHHHHHHHHHHhccC---cccCCCccc
Confidence 46899999988 5542 323 223332111 000 135679888899999999999997652 3467889
Q ss_pred -EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh-hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 114 -IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW-RTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 114 -i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~-~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
|++|+|+++|+++++.+++++||.|++++|+|+++...++. . |.+++.++++..+ |.+|+++|++++++. +.+
T Consensus 115 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~ 189 (430)
T 2x5f_A 115 RPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRN-GANLQTYPIFDKD-GHYTTDSLVEALQSY---NKD 189 (430)
T ss_dssp CCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTT-CCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSS
T ss_pred eEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhc-CCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCC
Confidence 99999999999999999999999999999999999988887 6 9999999987543 789999999998742 336
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-----cCeEEEecccccccccCCCCcccHH-HhhhhccCCCCc---EEE
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFIND-----KNIHLVCDEIYAATVFSSPKFTSVA-EVIQEMDCNRDL---IHI 262 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-----~~~~lI~De~y~~~~~~~~~~~s~~-~~~~~~~~~~~~---vii 262 (477)
+++|++++|+||||.+++.+++++|+++|++ +|+++|+||+|+++.+++..+.++. .+.. ..++ +++
T Consensus 190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~ 265 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTN----LHSNAILPIR 265 (430)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHT----TCCTTEEEEE
T ss_pred CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhh----ccCCcceEEE
Confidence 8899999999999999999999999999999 9999999999998877765555655 4422 2467 899
Q ss_pred EecCCcccCCCCceEEEEEe---CCHHHHHHHHHhc------ccCCCchHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVYS---FNDTVVNCGRKMS------SFGLVSSQTQYLLASMLS-DDEFVDNFLVETSKRLAKR 332 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~~---~~~~i~~~~~~~~------~~~~vs~~~q~~~~~~L~-~~~~~~~~~~~~~~~l~~r 332 (477)
++||||.+|++|+|+||+++ +++ +.+.+.... ..+.++.+.|.++..+|+ +.++ .+.+++.+++++++
T Consensus 266 ~~s~sK~~~~~G~riG~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~ 343 (430)
T 2x5f_A 266 LDGATKEFFAWGFRVGFMTFGTSDQT-TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKER 343 (430)
T ss_dssp EEEHHHHTTCGGGCCEEEEEBCCCHH-HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHH
T ss_pred EEecccCCCCCCCCeEEEEEecCCHH-HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999 544 444443322 234588899999999998 8766 44566688999999
Q ss_pred HHHHHHHHh----hCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC
Q 011801 333 HHNFTKGLE----QVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM 408 (477)
Q Consensus 333 ~~~l~~~L~----~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~ 408 (477)
++.+.+.|+ +.|+++..+.+|+|+|++++ ..+ ..++++.+++++||.+.|| .++++||+++..
T Consensus 344 ~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~------~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~ 410 (430)
T 2x5f_A 344 YEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DVD------PEALRKHLIDKYSIGVIAL------NATDIRIAFSCV 410 (430)
T ss_dssp HHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SSC------HHHHHHHHHHHHCEECEEC------SSSEEEEEGGGS
T ss_pred HHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CCC------HHHHHHHHHHhCCEEEecC------CCCeEEEEEecC
Confidence 999999998 66888888889999999997 211 2357777777579999998 367999999955
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011801 409 DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~ 426 (477)
+++++++++++|++++++
T Consensus 411 ~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 411 EKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999999875
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=360.89 Aligned_cols=351 Identities=16% Similarity=0.196 Sum_probs=274.7
Q ss_pred ccccccccccc-----cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN-----QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n-----~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.++. +. +++.+.+.+.+... .....|++..|.++||+++++++....+.. .+
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~---~~ 102 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD------------SEHVGYAPIAGIPDFLCAAEKECFGNFRPE---GH 102 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH------------HHHHSCCCTTCCHHHHHHHHHHHHGGGCCS---SE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcc------------cccCCCCCCCChHHHHHHHHHHHhcccCcc---cc
Confidence 36899999852 33 45667777665311 124579888899999999999997654310 12
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|++|+|+++|+..++.++++|||.|++++|+|+.+...++.. |.+++.++++.+ +|.+|+++|++++++.... +
T Consensus 103 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~--~ 178 (418)
T 3rq1_A 103 IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDT-GRTLVTYSLFDE-HNNFNHEAFQNRVNELAAK--Q 178 (418)
T ss_dssp EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECSBCT-TSSBCHHHHHHHHHHHHHH--C
T ss_pred ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHc-CCEEEEEeeeCC-CCCcCHHHHHHHHHHhhcc--C
Confidence 39999999999999999999999999999999999999888877 999999998654 3889999999999753221 3
Q ss_pred ee-EEEEeCC-CCCcccCCCHHHHHHHHHHHH------hcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc--EE
Q 011801 192 IK-GLIITNP-SNPLGTTLDRDTLKSLVSFIN------DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL--IH 261 (477)
Q Consensus 192 ~k-~vii~nP-~NPtG~~~~~~~l~~l~~~~~------~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~--vi 261 (477)
++ ++++++| |||||.+++.+++++|+++|+ ++|++||+||+|.++.+++....++.....+ ..++ ++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~---~~~~~~~i 255 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSH---LPKEILTC 255 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTT---CCTTEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHh---cCCCceEE
Confidence 44 7889999 999999999999999999999 8999999999999876654322233222221 2234 58
Q ss_pred EEecCCcccCCCCceEEEEEe--CCHHHHHHHHHhc------ccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYS--FNDTVVNCGRKMS------SFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLA 330 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~--~~~~i~~~~~~~~------~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~ 330 (477)
+++||||.+|++|+|+||+++ .++.+.+.+.+.. .+..++.++|.++..+|.+.++. .+.+++.+++++
T Consensus 256 ~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (418)
T 3rq1_A 256 VCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIR 335 (418)
T ss_dssp EEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998 2444544443321 23457889999999999987532 333456678899
Q ss_pred HHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 331 KRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
++++.+.+.|+++|+++.++++|+|+|++++. ..++++. +.++||.+.|| ++++||+++..++
T Consensus 336 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~-l~~~gi~v~~g-------~~~iRis~~~~~~ 398 (418)
T 3rq1_A 336 DRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICEE-LKKEHIYVIAL-------ANGIRIAACGIPK 398 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHHH-HHHTTEECEEC-------SSEEEEEGGGSCH
T ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHHH-HHhCCEEEecC-------CCCeEEEEecCCH
Confidence 99999999999989999999999999998752 1246554 56779999997 4689999986799
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011801 411 DTLQVALNRIAAFVQQD 427 (477)
Q Consensus 411 e~l~~~l~~l~~~~~~~ 427 (477)
+++++++++|++++++.
T Consensus 399 ~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 399 CQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=364.62 Aligned_cols=357 Identities=17% Similarity=0.296 Sum_probs=286.6
Q ss_pred Cccccccccc-ccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-Cc
Q 011801 37 PGGVIQLGLA-ENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DR 113 (477)
Q Consensus 37 ~~~~i~l~~~-~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~ 113 (477)
+..+|+|+.+ .++++ ++.+.+.+.+.... .....|++..|..++++++++++.+.+| +.+++ ++
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~l~~~l~~~~g--~~~~~~~~ 104 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQS-----------GGVQAYTEYRGDLGIRDLLAPRLAAFTG--APVDARDG 104 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHHH-----------THHHHSCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTS
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHhc-----------CCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCc
Confidence 3458999984 45443 34455555442100 0133688888999999999999988777 34555 79
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC----CCCcccCHHHHHHHHHHHHHhC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI----SNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~----~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
|++|+|+++|+..++.+++++||.|+++.|+|.++...++.. |.+++.++++. ++++.+|+++|++++++
T Consensus 105 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----- 178 (407)
T 3nra_A 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----- 178 (407)
T ss_dssp EEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-----
T ss_pred EEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHc-CCEEEEeecccccccCcCCCcCHHHHHHHHhh-----
Confidence 999999999999999999999999999999999999888877 99999999842 35788999999999875
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh-hhccCCCCcEEEEecCCc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI-QEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~-~~~~~~~~~viiv~SlSK 268 (477)
++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. . ..+++++++||||
T Consensus 179 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~----~~~~~i~~~s~sK 253 (407)
T 3nra_A 179 -GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV----DAENVVTIMGPSK 253 (407)
T ss_dssp -TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS----CGGGEEEEECSSS
T ss_pred -CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc----cCCcEEEEeCccc
Confidence 788999999999999999999999999999999999999999999888776666655442 1 3578999999999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHHhc-cc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CC
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRKMS-SF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GI 345 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi 345 (477)
.+|++|+|+||++++++ +.+.+.... .+ ...+++.|.++..+|.+.+ .++++.+++++++++.+.+.|+++ |+
T Consensus 254 ~~g~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~ 329 (407)
T 3nra_A 254 TESLSGYRLGVAFGSRA-IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQAIRDELLHVLRGCEGV 329 (407)
T ss_dssp TTCCGGGCCEEEEECHH-HHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT---THHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred ccCCCeeeEEEEEcCHH-HHHHHHHHHhhhccCCChHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999544 444443322 22 2356788888888887531 235667778888999999999988 88
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+..+.+|+|+|++++... ....++++.+++++||.++||+.|++..++++||+++. +++++++++++|+++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 330 FARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp BCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred eeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHH
Confidence 8888888899999998521 11225777777778999999999987778999999996 99999999999999997
Q ss_pred hh
Q 011801 426 QD 427 (477)
Q Consensus 426 ~~ 427 (477)
+.
T Consensus 404 ~~ 405 (407)
T 3nra_A 404 RY 405 (407)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=380.27 Aligned_cols=355 Identities=15% Similarity=0.217 Sum_probs=272.1
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHH-hcccCCCCc-cCCCcEEE
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFM-GKGRGGRVT-FDPDRIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~-~~~~g~~~~-~~~~~i~~ 116 (477)
++|+|+.+++.++++.+...+.+. . ....|++..|.+++|+++++++ .+..+..+. .++++|++
T Consensus 105 ~~i~l~~g~~~~~~~~~~~al~~~-------------~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~ 170 (546)
T 2zy4_A 105 KSLSYVRDQLGLDPAAFLHEMVDG-------------I-LGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA 170 (546)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHH-------------H-HTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE
T ss_pred hhhecccCCCCCCChHHHHHHHHh-------------h-hcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE
Confidence 378999998888765544444331 0 1257999989999999988765 433332222 25789999
Q ss_pred eCChHHHHHHHHHH-----hcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 117 GGGATGANELIMFC-----LANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 117 t~G~t~al~~i~~~-----l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
|+|+++++..++.+ +++|||.|++++|+|++|...+... .|+++++++++++++|.+|+++|++++. .
T Consensus 171 t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~ 244 (546)
T 2zy4_A 171 VEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD------P 244 (546)
T ss_dssp EEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS------T
T ss_pred ECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC------C
Confidence 99999999999988 5789999999999999998875432 2789999999877789999999987653 3
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHH--HhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFI--NDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~--~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++++|+++|||||||.+++.+++++|+++| +++|++||+||+|+++.++ +.++... ..+++++++||||
T Consensus 245 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~------~~~~~i~~~S~SK 315 (546)
T 2zy4_A 245 AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAI------CPENTLLVYSFSK 315 (546)
T ss_dssp TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHH------CGGGEEEEEESTT
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHh------CCCCEEEEEeCcc
Confidence 799999999999999999999999999999 7899999999999987543 3555544 2368999999999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHH-H------------h-------------------------cccCCCchHHHHHH--
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGR-K------------M-------------------------SSFGLVSSQTQYLL-- 308 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~-~------------~-------------------------~~~~~vs~~~q~~~-- 308 (477)
.+|+||+|+||++++++.+.+.+. . . .....++.+.|.++
T Consensus 316 ~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~ 395 (546)
T 2zy4_A 316 YFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMAL 395 (546)
T ss_dssp TTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHH
T ss_pred ccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHH
Confidence 999999999999997753333321 0 0 11124677778763
Q ss_pred ---HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh---cc--------CchHHHH
Q 011801 309 ---ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK---EK--------TLEGEIA 374 (477)
Q Consensus 309 ---~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~---~~--------~~~~e~~ 374 (477)
++++.+. +.++++.++.+++|++.+.+.|. .++.+.++++|+|+|++++...+ .. ... +.+
T Consensus 396 ~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~-~~~ 470 (546)
T 2zy4_A 396 FSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSS-TGD 470 (546)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC-HHH
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCC-HHH
Confidence 3556543 34577888899999999999996 66666778999999999874211 00 001 123
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++..++.+.||.|.||+.|+. ++++|||+++..+++++++++++|+++++++.
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999986 56899999997789999999999999997654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=369.94 Aligned_cols=355 Identities=14% Similarity=0.144 Sum_probs=286.1
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+.-. -.....|++..|..++|+++|+++++.+| +.+++++|++
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-----------~~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~i~~ 110 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLR-----------EGVASIYPNLDGLPELKQEASRFAKLFVN--IDIPARACVP 110 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHH-----------HTGGGSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHh-----------CCcCcCCCCCCChHHHHHHHHHHHHHhhC--CCCCcccEEE
Confidence 46899999999885 4556665554210 01226798888999999999999998777 4567899999
Q ss_pred eCChHHHHHHHHHHhc--CCCC--eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 117 GGGATGANELIMFCLA--NPGD--AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 117 t~G~t~al~~i~~~l~--~~Gd--~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
|+|+++|+.+++.+++ ++|| .|+++.|+|.++...++.. |.+++.++++ .++|.+|+++|++++++ .++
T Consensus 111 t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~~~~~d~~~l~~~l~~-----~~~ 183 (437)
T 3g0t_A 111 TVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRIL-GQKFESFDLF-EYRGEKLREKLESYLQT-----GQF 183 (437)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHH-TCCCEEEEGG-GGCTTHHHHHHHHHHTT-----TCC
T ss_pred eCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHc-CCEEEEEeec-CCCCccCHHHHHHHHhc-----CCc
Confidence 9999999999999998 9999 9999999999999988877 9999999987 46788999999999842 278
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH-------HHhhhhccCCCCcEEEEec
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV-------AEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~-------~~~~~~~~~~~~~viiv~S 265 (477)
++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++. .++ ..+.. ..+++++++|
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~i~~~s 257 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD--YSHPGEPLYQPSVAN----YTDNYILALS 257 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC--CCSTTSSCCCCCGGG----TCSCEEEEEE
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC--cCcccccchhhccCC----CCCcEEEEEc
Confidence 9999999999999999999999999999999999999999998777632 222 22211 3578899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHH-----------------HHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNC-----------------GRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~-----------------~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
+||.+|++|+|+||++++++.+... +... ...+.++.+.|.++..+|.+.+..+.++++.+
T Consensus 258 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 337 (437)
T 3g0t_A 258 SSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSV 337 (437)
T ss_dssp STTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred CccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 9999999999999999965544303 3322 22345888999999999876532122267788
Q ss_pred HHHHHHHHHHHHHHhhCCCeEe-------cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 327 KRLAKRHHNFTKGLEQVGINCL-------KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~gi~~~-------~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
++++++++.+.+.|+++|+++. ++.+|+|+|++++. .+ ..++++.+.+ +||.+.||..|+...++
T Consensus 338 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~l~~~L~~-~gi~v~~~~~~~~~~~~ 409 (437)
T 3g0t_A 338 IEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG-MD------SSKLIEKFVR-YGMCAITLKTTGSKRNE 409 (437)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT-CC------HHHHHHHHHH-TTEECEESTTTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC-CC------HHHHHHHHHH-cCeEEeeccccCCCCCC
Confidence 8999999999999999998887 43788999999982 11 2256677765 49999999998865558
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++|||++..+++++++++++|++++++
T Consensus 410 ~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 410 AMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999977999999999999998864
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=360.91 Aligned_cols=355 Identities=22% Similarity=0.381 Sum_probs=283.7
Q ss_pred Cccccccccccc---ccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAEN---QLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~n---~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
+.++|+|+.+.+ .++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.++++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~ 102 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPD 102 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCCHH
Confidence 346799999887 443 3445555443210 0123688888899999999999988766 446789
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++++.+++|.+|+++|++++++ ++
T Consensus 103 ~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~ 175 (406)
T 1xi9_A 103 DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RT 175 (406)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TE
T ss_pred HEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCCCcCCcCCHHHHHHhhCc------Cc
Confidence 9999999999999999999999999999999999999888876 9999999987545788999999998854 78
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc-EEEEecCCcccC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL-IHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~-viiv~SlSK~~g 271 (477)
++|++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.++..+ ..++ +++++||||.+|
T Consensus 176 ~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~------~~~~~~i~~~s~sK~~~ 248 (406)
T 1xi9_A 176 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSL------TKDVPVIVMNGLSKVYF 248 (406)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHH------CSSSCEEEEEESTTTTC
T ss_pred eEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHc------CCCceEEEEeccccccC
Confidence 999999999999999999999999999999999999999999877743 33455544 2467 899999999999
Q ss_pred CCCceEEEEE--eCCH---HHHHHHHHhccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 272 LPGFRVGIVY--SFND---TVVNCGRKMSSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 272 ~~G~RvG~i~--~~~~---~i~~~~~~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
++|+|+||++ ++++ .+.+.+.....+ +.++.+.|.++..+|+.. .+++++.+++++++++.+.+.|++. |
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 325 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPG 325 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 7651 444444433222 557889999999888532 1236777888999999999999988 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+..+.+|+|+|++++... . .+..++++.+++++||.+.||+.|+..+++++||+++ .+++++++++++|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP---W-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFEKFM 400 (406)
T ss_dssp EECCCCCBSSEECCEECSCS---C-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccC---C-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 88777888999999887411 0 1123577777767799999999887655789999999 69999999999999998
Q ss_pred hhh
Q 011801 425 QQD 427 (477)
Q Consensus 425 ~~~ 427 (477)
++.
T Consensus 401 ~~~ 403 (406)
T 1xi9_A 401 KER 403 (406)
T ss_dssp HHC
T ss_pred HHH
Confidence 753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=358.18 Aligned_cols=352 Identities=16% Similarity=0.255 Sum_probs=287.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-. +....|++ +..++++++++++.+.+| +.+++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~--~~~~~~~~l~~~l~~~~g--~~~~~~~v~ 94 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLE------------QEIYGYTT--RPDSYNESIVNWLYRRHN--WKIKSEWLI 94 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHh------------CCCCCCCC--CCHHHHHHHHHHHHHHhC--CCCcHHHeE
Confidence 357899999988775 3666666655311 11234654 569999999999998776 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc--CCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD--ISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~--~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+|+|+++|+++++.+++++||.|+++.|+|+++...++.. |.+++.++++ ..++|.+|+++|+++++ +++
T Consensus 95 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~ 166 (391)
T 4dq6_A 95 YSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNN-NRELIISPLQKLENGNYIMDYEDIENKIK-------DVK 166 (391)
T ss_dssp EESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHT-TCEEEECCCEECTTSCEECCHHHHHHHCT-------TEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHc-CCeEEeeeeeecCCCceEeeHHHHHHHhh-------cCC
Confidence 9999999999999999999999999999999999888877 9999999987 55678899999998875 288
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+ ..+++++++|+||.+|++
T Consensus 167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~g~~ 243 (391)
T 4dq6_A 167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKE---FEKNTITCMAPTKTFNIA 243 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHHTEEEEECSHHHHTCG
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcc---ccCcEEEEEechhhccCc
Confidence 99999999999999999999999999999999999999999887776655565544221 136789999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhc---ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEe
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMS---SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCL 348 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~---~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~ 348 (477)
|+|+||++++++.+.+.+.... .++..+.+.|.++...+.+. ++++++.+++++++++.+.+.|++. |+.+.
T Consensus 244 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 320 (391)
T 4dq6_A 244 GLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENMPKLKVR 320 (391)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEec
Confidence 9999999998756655554432 23357788888888877653 3457788889999999999999884 89999
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.+.+++++|++++... ....++++.+++++||.++||+.|+...++++|++++ .+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 321 KPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp CCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHHHHh
Confidence 9999999999998521 0123577777776799999999998777899999999 48999999999999876
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=347.91 Aligned_cols=337 Identities=17% Similarity=0.220 Sum_probs=276.9
Q ss_pred CCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 35 QNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
..+.++|+|+.++|+++ ++.+.+.+.+.- .....|++ .|.+++|+++|++++ +++++
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~ 70 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAV-------------VKANRYAK-NEILMLGNKLAAHHQ--------VEAPS 70 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTG-------------GGTTSCCH-HHHHHHHHHHHHHTT--------SCGGG
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHH-------------hhCcCCCC-CchHHHHHHHHHHhC--------CChHH
Confidence 34667899999999984 466777666531 23456754 478999999999986 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++.+. ++.+|+++|++++++ +.+++
T Consensus 71 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~ 143 (354)
T 3ly1_A 71 ILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIA-GMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPS 143 (354)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCE
T ss_pred EEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCC
Confidence 999999999999999999999999999999999999888877 99999999864 578999999999873 13899
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCC-CcEEEEecCCcccCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR-DLIHIIYSLSKDMGL 272 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~-~~viiv~SlSK~~g~ 272 (477)
+|++++|+||||.+++.+++++|+++| ++|+++|+||+|+++.+.+.. .+...... .. +++++++||||.+|+
T Consensus 144 ~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~-~~~~~~~~----~~~~~~i~~~s~sK~~g~ 217 (354)
T 3ly1_A 144 IVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRF-RSISPMIT----QGAENIILLKTFSKIHAM 217 (354)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTC-CCSHHHHH----TTCSSEEEEEESSSTTCC
T ss_pred EEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccccc-CCHHHHhh----hcCCCEEEEeeChhhccC
Confidence 999999999999999999999999999 899999999999987766543 33333333 33 788999999999999
Q ss_pred CCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+|+||+++ ++.+.+.+......+.++.+.|.++..+|.+.+ ++++.+++++++++.+.+.|++.|+.+.++ .
T Consensus 218 ~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~ 291 (354)
T 3ly1_A 218 AGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDSA----FITYSKKSNDVSRQILLKALEDLKLPYLPS-E 291 (354)
T ss_dssp GGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-C
T ss_pred hhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCeECCC-C
Confidence 9999999999 455666666655556789999999999999754 467788899999999999999888887755 4
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+|+|++++. + ..++.+.+. ++||.++ |+.++ .++++||+++ +++++++++++|++++++
T Consensus 292 ~~~~~~~~~~--~------~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 292 GNFVFHQLVV--P------LKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp SSEEEEECSS--C------HHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCC--C------HHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 5789999984 1 124666665 5699998 76543 5789999998 789999999999999875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=351.52 Aligned_cols=323 Identities=17% Similarity=0.300 Sum_probs=261.8
Q ss_pred CccccccccccccccHH-HHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCFD-LIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.|+|+++++ .+ . ......|++. +..++|+++|++++ +++++|+
T Consensus 28 ~~~~i~l~~~~~~~~~~~~v-----a--------------~~~~~~Y~~~-~~~~lr~~la~~~~--------~~~~~v~ 79 (356)
T 1fg7_A 28 GNGDVWLNANEYPTAVEFQL-----T--------------QQTLNRYPEC-QPKAVIENYAQYAG--------VKPEQVL 79 (356)
T ss_dssp TTCSEECSSCCCSSCCCCCC-----C--------------CCCTTSCCCS-SCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CCceEEeeCCCCCCCCCHhH-----h--------------hhhhccCCCc-cHHHHHHHHHHHhC--------CChHHEE
Confidence 45789999999998653 22 1 1235679876 48999999999995 5688999
Q ss_pred EeCChHHHHHHHHHHhcCCC-CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPG-DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~G-d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++++++++.+++++| |+|+++.|+|+++...++.. |.+++.++++ ++|.+|+++++++++ ++++
T Consensus 80 ~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~-------~~~~ 149 (356)
T 1fg7_A 80 VSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKLD-------GVKV 149 (356)
T ss_dssp EESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSCT-------TEEE
T ss_pred EcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeeCC--CCCCCCHHHHHHHhc-------CCCE
Confidence 99999999999999999999 99999999999999988877 9999999876 367899999987663 6889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++||||||.+++.+++++|+++|+ +|+++|+||+|+++.. . .++..+.+ ..+++++++||||.+|++|
T Consensus 150 v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~-~---~~~~~~~~----~~~~~i~~~s~sK~~g~~G 220 (356)
T 1fg7_A 150 VYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP-Q---ASLAGWLA----EYPHLAILRTLSKAFALAG 220 (356)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-G---GCSGGGTT----TCTTEEEEEESSSTTCCGG
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-C---CcHHHHHh----hCCCEEEEecchHhhcCch
Confidence 999999999999999999999999999 9999999999997531 1 22223322 3577899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCce
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAG 353 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g 353 (477)
+|+||++++ +.+.+.++.....+.+++++|.++.++|.+.++ .++++.+++++++++.+.+.|++++ +....+.+|
T Consensus 221 ~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 297 (356)
T 1fg7_A 221 LRCGFTLAN-EEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSET 297 (356)
T ss_dssp GCCEEEEEC-HHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSS
T ss_pred hhhEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCC
Confidence 999999995 455565655555556899999999999987554 2477888899999999999999886 222334567
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC-CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP-GSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p-g~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
+|+|++++ + ..++++.+ .++||.++| |+.|+. ++++||+++ +++++++++++|+++
T Consensus 298 ~~~~~~~~---~------~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 298 NYILARFK---A------SSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREESQRVIDALRAE 354 (356)
T ss_dssp SEEEEEET---T------HHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred eEEEEECC---C------HHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 89999987 1 12466666 567999999 887764 569999998 689999999998753
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=355.47 Aligned_cols=338 Identities=22% Similarity=0.366 Sum_probs=274.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.+++.++ ++.+.+.+.+.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 93 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLK------------EGKTHYTDSRGILELREKISELYKDKYK--ADIIPDNII 93 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHSS--CCCCGGGEE
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHH------------cCccCCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 456899999988763 4555555544210 1134688878999999999999998776 456789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|++++|+|+++...++.. |.+++.++ +|+++|++++++ ++++|
T Consensus 94 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~--------~d~~~l~~~l~~------~~~~v 158 (370)
T 2z61_A 94 ITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFL-GAKPVFCD--------FTVESLEEALSD------KTKAI 158 (370)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEEC--------SSHHHHHHHCCS------SEEEE
T ss_pred ECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeC--------CCHHHHHHhccc------CceEE
Confidence 9999999999999999999999999999999999888876 99998887 578999888753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+ |+++|+++|+++|+||+|+++.+++. +.++..+.. ..+++++++||||.+|++|+
T Consensus 159 ~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~----~~~~~i~~~s~sK~~~~~G~ 229 (370)
T 2z61_A 159 IINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDE----NLEKTILINGFSKLYAMTGW 229 (370)
T ss_dssp EEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCT----TCSSEEEEEESTTTTTCGGG
T ss_pred EEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccC----CCCcEEEEecChhccCCccc
Confidence 9999999999999966 89999999999999999998777653 344444311 34788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 276 RVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSD-DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~-~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
|+||++++++ +.+.++... ..+.++++.|.++..+|+. . +.++++.+++++++++.+.+.|++.|+++..+.+
T Consensus 230 r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 305 (370)
T 2z61_A 230 RIGYVISNDE-IIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIG 305 (370)
T ss_dssp CCEEEECCHH-HHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCB
T ss_pred eEEEEEECHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCc
Confidence 9999999664 444444332 2235788999999888875 3 4457788889999999999999988988888888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|+|++++. + ..++.+.+++++||.+.||+.|+..+++++|++++ .+++++++++++|+++++
T Consensus 306 ~~~~~~~~~~--~------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE--D------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS--C------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC--C------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 9999999874 1 22577777767799999999887545789999999 599999999999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=361.11 Aligned_cols=354 Identities=20% Similarity=0.274 Sum_probs=291.6
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+.+.++ ++.+.+.+.+..+ .....|++.. .++++++++++.+.++ +.+++++|+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~--~~l~~~l~~~l~~~~g--~~~~~~~v~ 123 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGR------------EHIFGYNYFN--DDLYQAVIDWERKEHD--YAVVKEDIL 123 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHH------------HCCSSCBCCC--HHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCC--HHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999987775 4666666655211 1234566543 8999999999998777 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|++.++.++.++||.|+++.|+|+++...+... |.+++.++++ ..++|.+|+++|++++++ .++++
T Consensus 124 ~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~ 197 (421)
T 3l8a_A 124 FIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLN-DHRLVENSLQIINGRFEIDFEQLEKDIID-----NNVKI 197 (421)
T ss_dssp EESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHT-TEEEEEEECEEETTEEECCHHHHHHHHHH-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHC-CCEEEeccccccCCCeeeCHHHHHHHhhc-----cCCeE
Confidence 9999999999999999999999999999999999888876 9999999986 566788999999999974 28999
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+.+..+.++..+..+ ..++++++.|+||.+|++|
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~g~~G 274 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDAS---YKDFTIILSSATKTFNIAG 274 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTT---GGGTEEEEECSHHHHTCGG
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCch---hcCcEEEEEeChhhccCch
Confidence 9999999999999999999999999999999999999999988877666666554321 2367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc---ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS---SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~---~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~ 350 (477)
+|+||++++++.+.+.+.... .++..+++++.++.+++... ++++++.+++++++++.+.+.|++. ++.+..+
T Consensus 275 ~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 275 TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 999999998666666554332 34457888888888887642 4567888889999999999999885 8999999
Q ss_pred CceEEEEeeccch-hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 351 NAGLFFWMDLRHL-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 351 ~~g~~~~~~l~~~-~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+++++|++++.. .+. .++++.+++++||.+.||+.|+..+++++||+++. +++++++++++|+++++
T Consensus 352 ~~~~~~~v~~~~~~~~~------~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAIAQ------PQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGTCCT------THHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccCCCH------HHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999999852 111 25777787788999999999987778999999994 89999999999998874
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=363.35 Aligned_cols=344 Identities=15% Similarity=0.159 Sum_probs=270.4
Q ss_pred cccccccccc--cccH----HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 39 GVIQLGLAEN--QLCF----DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 39 ~~i~l~~~~n--~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
++|+|+.+.. ..++ +.+.+.+.+... -.....|++..|.+++|+++|+++++.+| +.++++
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~-----------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~ 95 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAA-----------KKMDKEYLPIAGLADFTRASAELALGENS--EAFKSG 95 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcc-----------cccccCCCCCCCCHHHHHHHHHHhcCCCc--cccccC
Confidence 4799998873 3222 234444333100 01345798888999999999999987665 456789
Q ss_pred cEEE--eCChHHHHHHHHHHhc---CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVM--GGGATGANELIMFCLA---NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~--t~G~t~al~~i~~~l~---~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+|++ |+|+++|+.+++.++. +|||.|++++|+|+.+...++.. |.+++.++++..+++.+|++++++.+++.
T Consensus 96 ~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 172 (401)
T 7aat_A 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISKI-- 172 (401)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTS--
T ss_pred ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-CCeeEeeeeeccccCccCHHHHHHHHHhC--
Confidence 9987 9999999999887664 89999999999999999988877 99999999865567899999998888642
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEec
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+.. ..+++++++|
T Consensus 173 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S 247 (401)
T 7aat_A 173 -PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE----QGIDVVLSQS 247 (401)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCCCEEEEE
T ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh----cCCcEEEEec
Confidence 34788999999999999999999999999999999999999999998877543 2334444333 4578899999
Q ss_pred CCcccCCCCceEEEEEe--CCHH----HHHHHHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYS--FNDT----VVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHH 334 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~--~~~~----i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~ 334 (477)
|||.||++|+|+||+++ .++. +....+.. .....++.+.|.+++.++.++++. .+++++.+++++++++
T Consensus 248 ~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 327 (401)
T 7aat_A 248 YAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRT 327 (401)
T ss_dssp CTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 2333 33333322 223346678888888888886542 4557788899999999
Q ss_pred HHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 335 NFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 335 ~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
.+.+.|++.| +++..+++|+|+|++++. +.+..+++++||.+.|+ +|++++..++
T Consensus 328 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~~----------~Ris~~~~~~ 386 (401)
T 7aat_A 328 QLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISVAGVAS 386 (401)
T ss_dssp HHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCCceecCCcceEEecCCCH-----------HHHHHHHHhCCEeccCC----------CeEEeccCCh
Confidence 9999999886 667788999999987762 34567778889999765 6999998777
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|++++
T Consensus 387 ~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 387 SNVGYLAHAIHQVT 400 (401)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 77999999999876
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=358.01 Aligned_cols=351 Identities=23% Similarity=0.373 Sum_probs=283.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+ +.-. .....|++..|..++|+++|+++++.+| +.+++++|+
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~ 106 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENK------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 106 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTC------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 356899999988753 34455555 4211 1134688888899999999999998766 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+++|.+ +++|++++++ ++++|
T Consensus 107 ~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v 178 (409)
T 2gb3_A 107 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGI 178 (409)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEE
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEE
Confidence 9999999999999999999999999999999999888877 99999999875456666 7888877753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|+++.+++ .+.+. +.+ ..+++++++|+||.+|++|+
T Consensus 179 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~---~~~---~~~~~i~~~s~sK~~g~~G~ 251 (409)
T 2gb3_A 179 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA---LSI---ESDKVVVIDSVSKKFSACGA 251 (409)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG---GGS---CCTTEEEEEESTTTTTCGGG
T ss_pred EECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc---ccc---CCCCEEEEecchhccCCccc
Confidence 999999999999999999999999999999999999999877765 33343 111 23678999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE-ecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINC-LKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~-~~~~~g 353 (477)
|+||++++++.+.+.+......+ .++.+.|.++..+|+.. +.++++.+++++++++.+.+.|++.|+++ ..+.+|
T Consensus 252 r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 328 (409)
T 2gb3_A 252 RVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGA 328 (409)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBS
T ss_pred eEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCee
Confidence 99999998734555444433333 57889999999999753 34577888889999999999999889888 778889
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHh-----cCeEEeCCCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVND-----VKLNVSPGSSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~-----~gI~v~pg~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++. . +..++++.++++ +||.+.||..|+. .+++++||+++ .+++++++++++|+++++
T Consensus 329 ~~~~~~~~~-~------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 329 FYITAELPV-E------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp SEEEEECSS-S------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC-C------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 999999871 1 123577777766 6999999998865 24689999999 699999999999999997
Q ss_pred hhh
Q 011801 426 QDK 428 (477)
Q Consensus 426 ~~~ 428 (477)
+.+
T Consensus 401 ~~~ 403 (409)
T 2gb3_A 401 MFC 403 (409)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=346.84 Aligned_cols=330 Identities=16% Similarity=0.235 Sum_probs=271.7
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.++|+++ ++.+.+.+.+.. .....|++ .+..++|+++|++++ +++++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~v~~ 89 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSS-------------VETEIYPD-GWASSLRKEVADFYQ--------LEEEELIF 89 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCB-------------SCCCBC-----CHHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC-cchHHHHHHHHHHhC--------CChhhEEE
Confidence 47899999999985 466777776631 23456755 478999999999997 56889999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++++++.++.++||+|+++.|+|+++...++.. |.+++.+++++ ++.+|++++++++++ ++++|+
T Consensus 90 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~ 160 (363)
T 3ffh_A 90 TAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIE-GAEVREIPLLQ--DGEHDLEGMLNAIDE------KTTIVW 160 (363)
T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHH-TCEEEEEECCT--TSCCCHHHHHHHCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCCC--CCCcCHHHHHHhccc------CCCEEE
Confidence 999999999999999999999999999999999988887 99999999874 578999999998853 799999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
+++|+||||.+++.+++.+|++.|++ |+++|+||+|+++.+ +. +.+...... ..+++++++||||.+|++|+|
T Consensus 161 ~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~-~~~~~~~~~----~~~~~i~~~s~sK~~g~~G~r 233 (363)
T 3ffh_A 161 ICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ-PEKHEKLVR----TYKNLIITRTFSKIYGLASAR 233 (363)
T ss_dssp EESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC-CCCCGGGGG----TCTTEEEEEESSSTTCCSSCC
T ss_pred EeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc-ccCHHHHhh----cCCCEEEEeechhhhcCchhc
Confidence 99999999999999999999998887 999999999998766 32 233333333 468899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-VGINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~gi~~~~~~~g~~ 355 (477)
+||+++ ++.+.+.++.....+.++.+.|.++..+|.+.+ ++++.+++++++++.+.+.|++ .|+++.++. |+|
T Consensus 234 ~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~ 307 (363)
T 3ffh_A 234 VGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQA----FIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNF 307 (363)
T ss_dssp CEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC-SSE
T ss_pred eeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHhhCCCceECCCC-CeE
Confidence 999999 555556565555556689999999999998654 4677888899999999999999 699887655 468
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|++++. ...++.+.+.+ +||.++||+.|+. ++++|++++ +++++++++++|++++
T Consensus 308 ~~~~~~~--------~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 308 VLIDLGI--------EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EEEECSS--------CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred EEEECCC--------CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 9999974 12246666664 6999999998865 789999998 8999999999998763
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=346.05 Aligned_cols=341 Identities=18% Similarity=0.250 Sum_probs=277.5
Q ss_pred CCCCCCCCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 29 NPFHPTQNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 29 ~~~~~~~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
.+|++.. +.++|+|+.++|+++ ++.+.+.+.+.-. -.....|++ .|..++|+++|++++ +
T Consensus 22 ~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-----------~~~~~~y~~-~~~~~l~~~la~~~g------~ 82 (367)
T 3euc_A 22 GAYHVPD-SHGLVKLDAMENPYRLPPALRSELAARLG-----------EVALNRYPV-PSSEALRAKLKEVMQ------V 82 (367)
T ss_dssp CCSSCCC-CTTCEECCSSCCCCCCCHHHHHHHHHHHH-----------HHHTTCSCC-CCHHHHHHHHHHHHT------C
T ss_pred CCCCCCC-CCCeeEccCCCCCCCCCHHHHHHHHHHhh-----------hhhhhcCCC-CcHHHHHHHHHHHhC------C
Confidence 4566654 678999999999985 4556665554210 003456876 478999999999996 2
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
. ++++|++|+|+++|+.+++.++.++||.|+++.|+|.++...++.. |.+++.++++. +|.+|+++|++++++.
T Consensus 83 ~-~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~~-- 156 (367)
T 3euc_A 83 P-AGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFA-GLEFVGVPLRA--DFTLDRGAMLAAMAEH-- 156 (367)
T ss_dssp C-TTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTT-TCEEEEEECCT--TSCCCHHHHHHHHHHH--
T ss_pred C-CcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHHHhhcc--
Confidence 1 6789999999999999999999999999999999999999888877 99999999875 6789999999999764
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
++++|++++|+||||.+++.+++++|+++|+++ |+++|+||+|+++.. ....+ ... ..+++++++|
T Consensus 157 ---~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~--~~~~~---~~~----~~~~~i~~~s 224 (367)
T 3euc_A 157 ---QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ--ESWMS---RLT----DFGNLLVMRT 224 (367)
T ss_dssp ---CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS--CCSGG---GGG----TCTTEEEEEE
T ss_pred ---CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc--cchHH---HHh----hCCCEEEEec
Confidence 789999999999999999999999999999999 999999999997542 22222 222 4578899999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-G 344 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-g 344 (477)
|||. +++|+|+||++++ +.+.+.+......+..+.+.|.++..+|++.+ ++++.+++++++++.+.+.|+++ |
T Consensus 225 ~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~g 298 (367)
T 3euc_A 225 VSKL-GLAGIRLGYVAGD-PQWLEQLDKVRPPYNVNVLTEATALFALEHVA----VLDEQAAQLRAERSRVAEGMAAHGG 298 (367)
T ss_dssp CCCT-TSCSCCEEEEEEC-HHHHHHHGGGCCSSCCCHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred chhh-cccccCceeeeeC-HHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 8999999999995 45555565555555689999999999998843 46778888999999999999998 8
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+.+ ..|+|+|++++ + ..++.+.+ .++||.++||+.|+...++++|++++ +++++++++++|++++
T Consensus 299 ~~~~~-~~~~~~~~~~~---~------~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 299 VTVFP-SAANFLLARVP---D------AAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASL 365 (367)
T ss_dssp CEECC-CSSSEEEEECS---C------HHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred cEECC-CCCeEEEEECC---C------HHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHh
Confidence 88654 45679999987 1 12455554 56799999999887666889999998 8999999999999886
Q ss_pred h
Q 011801 425 Q 425 (477)
Q Consensus 425 ~ 425 (477)
+
T Consensus 366 ~ 366 (367)
T 3euc_A 366 Q 366 (367)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=354.97 Aligned_cols=342 Identities=21% Similarity=0.349 Sum_probs=276.3
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+.-. ....|++..|..++|++++++++ .++++|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~~--------~~~~~v~~ 83 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRALG-------------RQDQYAPPAGLPALREALAEEFA--------VEPESVVV 83 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHTT-------------TSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHH-------------HhcCCCCCCCCHHHHHHHHHhcC--------CChhhEEE
Confidence 35799999988764 4566666655311 13468887789999999999976 56789999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc--CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD--ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~--~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
|+|+++|+++++.++.++||.|+++.|+|+++...++.. |.+++.++++ . .++.+|+++|++++++ ++++
T Consensus 84 ~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~-~~~~~d~~~l~~~l~~------~~~~ 155 (381)
T 1v2d_A 84 TSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTP-EGFRLDLSALEKALTP------RTRA 155 (381)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEET-TEEECCHHHHHTTCCT------TEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCCCC-ccCCcCHHHHHHhcCc------CCEE
Confidence 999999999999999999999999999999999888776 9999999986 3 2478999999988743 7899
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+ +....++..+ ..+++++++|+||.+|++|
T Consensus 156 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~------~~~~~~~~~s~sK~~~~~G 228 (381)
T 1v2d_A 156 LLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF------APERTFTVGSAGKRLEATG 228 (381)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH------CTTTEEEEEEHHHHTTCGG
T ss_pred EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh------cCCCEEEEeechhhcCCcc
Confidence 99999999999999999999999999999999999999998777 4444555544 2367899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~ 352 (477)
+|+||++++++.+ +.+.... ..+.++++.|.++..+|....+ ++++++.+++++++++++.+.|++.|+++..+.+
T Consensus 229 ~r~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 306 (381)
T 1v2d_A 229 YRVGWIVGPKEFM-PRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEG 306 (381)
T ss_dssp GCCEEEECCTTTH-HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSB
T ss_pred cceEEEEeCHHHH-HHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCc
Confidence 9999999966544 3333222 2345788899988888875422 3457788889999999999999999999988888
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--TEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
|+|+|++++.. + +..++.++||.+.||+.|.. ..++++||+++. +++++++++++|++++++.+.
T Consensus 307 ~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 307 TYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp SSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-----
T ss_pred ceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhccc
Confidence 99999998742 1 34456778999999998875 346799999997 999999999999999876543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=361.94 Aligned_cols=352 Identities=18% Similarity=0.257 Sum_probs=276.9
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+++++.++ ++.+.+.+.+.... .........|++..|.++||+++|+|+.+ + +.+++++|+
T Consensus 55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~--~~~~~~~i~ 123 (432)
T 3ei9_A 55 DAQVISLGIGDTTEPIPEVITSAMAKKAHE-------LSTIEGYSGYGAEQGAKPLRAAIAKTFYG--G--LGIGDDDVF 123 (432)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHHHHH-------TTSTTTCCCCCCTTCCHHHHHHHHHHHHT--T--TTCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhc-------ccccCCccCCCCCCCCHHHHHHHHHHHHc--c--CCCCcceEE
Confidence 347899999987764 35555555442110 00001234788878999999999999973 2 346789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
+|+|+++++.++ ..++++||.|++++|+|+++...++.. | .+++.++++..+++..++++
T Consensus 124 ~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 195 (432)
T 3ei9_A 124 VSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------ 195 (432)
T ss_dssp EESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------
T ss_pred ECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhh------
Confidence 999999999985 677899999999999999998887766 5 36788888765566666443
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
..++++|++++||||||.+++.+++++|+++|+++|++||+||+|+++++++.. .++..+.. ..++++++
T Consensus 196 -----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~-~~~~~~~~----~~~~~i~~ 265 (432)
T 3ei9_A 196 -----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP-RSIFEIPG----AEEVAMET 265 (432)
T ss_dssp -----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCC-SSGGGSTT----GGGTEEEE
T ss_pred -----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCC-CChhhcCC----CCCeEEEE
Confidence 237899999999999999999999999999999999999999999988776433 44444321 24678999
Q ss_pred ecCCcccCCCCceEEEEEeCCHH-------HHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDT-------VVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~-------i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~ 334 (477)
+||||.+|++|+|+||++++++. +...+.+. ..+..+++++|.++.+++.+.. ..++++.+++++++++
T Consensus 266 ~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~ 343 (432)
T 3ei9_A 266 ASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYKENTN 343 (432)
T ss_dssp EESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHHHHHH
T ss_pred ecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Confidence 99999999999999999998766 13444332 2344578899999998887543 3567888999999999
Q ss_pred HHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHH
Q 011801 335 NFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQ 414 (477)
Q Consensus 335 ~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~ 414 (477)
.+.+.|++.|+++..+.+|+|+|++++.. . ..+++..++++.||.+.||+.|++.+++++||+++. ++++++
T Consensus 344 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~ 415 (432)
T 3ei9_A 344 IIIDTFTSLGYDVYGGKNAPYVWVHFPNQ-S------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENIL 415 (432)
T ss_dssp HHHHHHHHTTCCEEECSSSSEEEEECTTS-C------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHH
T ss_pred HHHHHHHHCCceecCCCcceEEEEECCCC-C------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHH
Confidence 99999999999988877889999999821 1 235778888888999999999987778999999975 999999
Q ss_pred HHHHHHHHHHhhh
Q 011801 415 VALNRIAAFVQQD 427 (477)
Q Consensus 415 ~~l~~l~~~~~~~ 427 (477)
+++++|++--..+
T Consensus 416 ~~l~rl~~~~~~~ 428 (432)
T 3ei9_A 416 EACRRFKQLYKHH 428 (432)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhc
Confidence 9999999866543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=352.78 Aligned_cols=358 Identities=20% Similarity=0.306 Sum_probs=281.9
Q ss_pred ccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+... .+.+.+.+.+.+.-. .+ ..... |++..|..++|+++|+++.+.+| +.+++++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~------~~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 102 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLE------KE---PKSVM-YTPANGIPELREELAAFLKKYDH--LEVSPENIV 102 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHH------HC---GGGGS-CCCTTCCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHh------hc---ccccc-CCCCCCCHHHHHHHHHHHHHhcC--CCCCcceEE
Confidence 57999776532 255666665544210 00 01234 88888999999999999977665 446789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ .+|+++|++++++....+.++++|
T Consensus 103 ~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v 178 (407)
T 2zc0_A 103 ITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQL-GAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLI 178 (407)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEE
Confidence 9999999999999999999999999999999998888876 999999998743 389999999987432223478887
Q ss_pred -EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 -IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 -ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+. ..+++++++||||.+| +|
T Consensus 179 ~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~-~G 252 (407)
T 2zc0_A 179 YTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD-----NEGRVIVAGTLSKVLG-TG 252 (407)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC-----SSCCEEEEEESTTTTC-TT
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC-----CCCCEEEEcccccccC-CC
Confidence 5789999999999999999999999999999999999998877665445554431 2367899999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHH-HHHHHHHHHHHHHHHHHHHHHhhC--CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVD-NFLVETSKRLAKRHHNFTKGLEQV--GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~-~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~ 349 (477)
+|+||++++ +.+.+.+...... ...+++.|.++..+|++..+ + .++++.+++++++++.+.+.|++. |+.+..
T Consensus 253 ~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (407)
T 2zc0_A 253 FRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK 330 (407)
T ss_dssp SCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC
T ss_pred cceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec
Confidence 999999996 4455544433222 23578999999999987643 4 667788889999999999999874 677777
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|+|+|++++...+ ..++++.+++++||.+.||+.|... .++++||+++..+++++++++++|++++++
T Consensus 331 ~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 331 PIAGMFVMFFLPEGAD------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp CSBSSEEEEECSTTCC------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCCC------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 7888999999975221 2257777777669999999988653 468999999876789999999999999875
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=352.82 Aligned_cols=350 Identities=17% Similarity=0.290 Sum_probs=277.4
Q ss_pred ccccccccccc---ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAENQ---LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+... .+++.+.+.+.+.... . -.....|++..|..++|+++|++++ +++++|+
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~v~ 95 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAARILRE-----K----GEVALQYSPTEGYAPLRAFVAEWIG--------VRPEEVL 95 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHHHHHH-----H----HHHHTSCCCTTCCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CceecCCCCCCchhCCHHHHHHHHHHHHHh-----c----chhhhCCCCCCCCHHHHHHHHHHhC--------CChhhEE
Confidence 57899766422 2556666665542100 0 0123578887899999999999995 4678999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++.+ .+|+++|++++++. ++++|
T Consensus 96 ~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~---~~d~~~l~~~l~~~-----~~~~v 166 (397)
T 2zyj_A 96 ITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQ-GPRFLTVPAGEE---GPDLDALEEVLKRE-----RPRFL 166 (397)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHC-----CCSCE
T ss_pred EeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEecCcCCC---CCCHHHHHHHHhhc-----CCeEE
Confidence 9999999999999999999999999999999999888876 999999998752 38999999998742 67887
Q ss_pred -EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 -IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 -ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++..+.++..+..+. ..+++++++|+||.+| +|
T Consensus 167 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~-~G 243 (397)
T 2zyj_A 167 YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA--GYPGVIYLGSFSKVLS-PG 243 (397)
T ss_dssp EECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH--TCCCEEEEEESTTTTC-GG
T ss_pred EECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc--CCCeEEEEeccccccc-cc
Confidence 4789999999999999999999999999999999999998877665556665552200 0167899999999999 99
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-c-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEec
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-S-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLK 349 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~ 349 (477)
+|+||+++++ .+.+.+.... . ....++++|.++..+|++.++ +++++.+++++++++.+.+.|++. |+.+..
T Consensus 244 ~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~ 320 (397)
T 2zyj_A 244 LRVAFAVAHP-EALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVPKEVRYTR 320 (397)
T ss_dssp GCCEEEECCH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC
T ss_pred ceeEEEecCH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc
Confidence 9999999964 4444443322 1 233688999999999988653 567888899999999999999875 788877
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+|+|+|++++...+ ..++++.++++ ||.+.||+.|+.. .++++||+++..+++++++++++|++++++.
T Consensus 321 ~~~g~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 321 PKGGMFVWMELPKGLS------AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp CSBSSEEEEECSTTCC------HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCC------HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999975221 22577777766 9999999988653 4689999998768999999999999998753
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=359.77 Aligned_cols=345 Identities=16% Similarity=0.188 Sum_probs=273.0
Q ss_pred cccccccccc---ccc-c--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAE---NQL-C--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~---n~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+. +.. . ++.+.+.+.+.-+. .....|++..|.+++|+++++++....+ ..+++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA-----------GLPRGYLPIDGIAAYDASVQKLLLGDDS--PLIAA 115 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc-----------CCCCCCCCCCCcHHHHHHHHHHhcCCCc--ccccc
Confidence 3789999983 332 2 25566655542100 1235788889999999999999975433 23368
Q ss_pred C--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 D--RIVMGGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~--~i~~t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+ +|++|+|+++|+.+++ .+++++||.|++++|+|+++...++.. |.+++.+++...+++.+|+++|++++++.
T Consensus 116 ~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 192 (420)
T 4f4e_A 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMA-GFEVVAYPYYDAKTNGVNFDGMLAALNGY-- 192 (420)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHT-TCCEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred CceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEeeeeccccCccCHHHHHHHHHhC--
Confidence 8 8999999999999994 466899999999999999999888877 99999999844457899999999998632
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. ....++..+.. ..+++++++||
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~ 267 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA----ANLNVFVSSSF 267 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTCCEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh----cCCCEEEEEeC
Confidence 2367899999999999999999999999999999999999999999988764 23455555443 45789999999
Q ss_pred CcccCCCCceEEEEEe--CCHHHHH-H---HHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYS--FNDTVVN-C---GRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~--~~~~i~~-~---~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~ 335 (477)
||.+|++|+|+||+++ .++.+.. . .+.. ..+..++.+.|.+++.+|.+..+. ++++++.+++++++++.
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 4444332 2 2221 234456789999999999886531 46678889999999999
Q ss_pred HHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+.+.|++. |+.+..+++|+|+|++++. +.+..+++++||.+.|+ .|++++..+++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~----------~Ris~~~~~~~ 406 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVST----------GRICVAALNTR 406 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------SEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEEecCCHH
Confidence 99999987 7788888999999998852 24566677789999985 29999977888
Q ss_pred HHHHHHHHHHHHH
Q 011801 412 TLQVALNRIAAFV 424 (477)
Q Consensus 412 ~l~~~l~~l~~~~ 424 (477)
++++++++|++++
T Consensus 407 ~i~~~~~~l~~~l 419 (420)
T 4f4e_A 407 NLDVVANAIAAVL 419 (420)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999876
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-43 Score=358.38 Aligned_cols=320 Identities=18% Similarity=0.207 Sum_probs=253.7
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHH--HHHHHHhcCC------------CCeEEEcCCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGAN--ELIMFCLANP------------GDAFLVPSPY 144 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al--~~i~~~l~~~------------Gd~vlv~~P~ 144 (477)
...|++..|.++||+++|+|++ +++++|++|+|+++++ .+++.++..+ +|+|++++|+
T Consensus 69 ~~~Y~~~~G~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~ 140 (422)
T 3d6k_A 69 CRNYGGLLGIADIRELWAEALG--------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPG 140 (422)
T ss_dssp TTSSCCSSCCHHHHHHHHHHHT--------CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESC
T ss_pred hhCCCCCCCCHHHHHHHHHHhC--------CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCc
Confidence 5589999999999999999995 5789999999999997 6777877655 3579999999
Q ss_pred ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE-EeCCCCCcccCCCHHHHHHHHHHHH-h
Q 011801 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI-ITNPSNPLGTTLDRDTLKSLVSFIN-D 222 (477)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi-i~nP~NPtG~~~~~~~l~~l~~~~~-~ 222 (477)
|+++...++.. |.++++++++.+ .+|+++|++++++ .++++|+ +++||||||.+++.+++++|+++|+ +
T Consensus 141 y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~ 211 (422)
T 3d6k_A 141 YDRHFTITEHF-GFEMINVPMTDE---GPDMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAA 211 (422)
T ss_dssp CHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSS
T ss_pred cHHHHHHHHHc-CCEEEecCCCCC---CCCHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhc
Confidence 99999988887 999999998753 3899999998853 2688888 6899999999999999999999999 9
Q ss_pred cCeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccC
Q 011801 223 KNIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFG 298 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~ 298 (477)
+|++||+||+|+.+.| .+..+.++..+....+ ..+++++++||||. ++||+|+||++++++ +.+.+.+.. ..+
T Consensus 212 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~-~~~GlriG~~~~~~~-l~~~l~~~~~~~~~ 288 (422)
T 3d6k_A 212 PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG-NPNRFWFMSSTSKI-THAGSGVSFFASSKE-NIEWYASHANVRGI 288 (422)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-CTTCEEEEEESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHCS
T ss_pred cCCEEEEECCccccccCCCCCCCcChhhHhhccC-CCCcEEEEcChhhh-cCcccceEEEEeCHH-HHHHHHHHHHhhcC
Confidence 9999999999985333 3334456544321000 35789999999999 679999999999654 444444332 224
Q ss_pred CCchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhh----CC-CeEecCCceEEEEeeccchhhccCchHH
Q 011801 299 LVSSQTQYLLASMLSD-DEFVDNFLVETSKRLAKRHHNFTKGLEQ----VG-INCLKSNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 299 ~vs~~~q~~~~~~L~~-~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
.++.++|.++..+|++ +.+ ++++++.++.++++++.+.+.|.+ .| +.+..+++|+|+|++++.. ..
T Consensus 289 ~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-------~~ 360 (422)
T 3d6k_A 289 GPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-------TA 360 (422)
T ss_dssp CCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-------CH
T ss_pred CCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-------CH
Confidence 5788999999999998 444 677888889999999988888765 34 5666788899999999853 11
Q ss_pred HHHHHHHHHhcCeEEeCC-CCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 373 IALWRTIVNDVKLNVSPG-SSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg-~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.++ ...+.++||.++|| ..|.. ..++++||+++..+++++++++++|++++++.
T Consensus 361 ~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 361 SRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp HHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 234 34566779999994 55642 23689999998668999999999999998753
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=357.46 Aligned_cols=350 Identities=19% Similarity=0.273 Sum_probs=265.6
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.+++.++ ++.+.+.+.+.-.. .........|++..|.+++|+++|+++. +| + +++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g--~-~~~~~v~ 99 (400)
T 3asa_A 32 QHTVINLSIGDTTQPLNASVAEAFASSIAR-------LSSPTTCRGYGPDFGLPALRQKLSEDFY--RG--F-VDAKEIF 99 (400)
T ss_dssp TSCCEECSSCCCCCCCCHHHHHHHHHHHHH-------HTSSSCCCCCCCTTCCHHHHHHHHHTTS--TT--S-SCGGGEE
T ss_pred CCceEeccCCCCCCCCCHHHHHHHHHHHhc-------ccccccccCCCCCCCCHHHHHHHHHHHH--cC--C-CCHHHEE
Confidence 346899999988653 45555555442100 0000123468777899999999999964 23 3 5789999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE-EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ-IVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++++.+++.. +++||.|++++|+|+++...++.. |.+ ++.++++.++++..+++++ .++++
T Consensus 100 ~~~G~~~al~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~ 166 (400)
T 3asa_A 100 ISDGAKVDLFRLLSF-FGPNQTVAIQDPSYPAYLDIARLT-GAKEIIALPCLQENAFFPEFPED-----------THIDI 166 (400)
T ss_dssp EESCHHHHHHHHHHH-HCSSCEEEEEESCCHHHHHHHHHT-TCSEEEEEECCGGGTTCCCCCTT-----------CCCSE
T ss_pred EccChHHHHHHHHHH-cCCCCEEEECCCCcHHHHHHHHHc-CCcceEecccchhcCcccChhhc-----------cCccE
Confidence 999999999997654 589999999999999999888776 998 9999987555565554321 27889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++....++..+.. ..+++++++||||.+|++|
T Consensus 167 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~g~~G 242 (400)
T 3asa_A 167 LCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPD----ARFCAIEINSFSKPLGFAG 242 (400)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTT----GGGTEEEEEECCGGGTTTT
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCC----CCCceEEEecchhhcCCcc
Confidence 999999999999999999999999999999999999999987665432334433311 1357899999999999999
Q ss_pred ceEEEEEeCCHH-------HHHHHH--HhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 275 FRVGIVYSFNDT-------VVNCGR--KMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 275 ~RvG~i~~~~~~-------i~~~~~--~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
+|+||++++++. +..... ....++.++.++|.++..+|++. ++++.+++++++++.+.+.|++.|+
T Consensus 243 lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~g~ 317 (400)
T 3asa_A 243 IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLRKALLATGF 317 (400)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999997765 443332 22334568899999988888654 2566778888999999999999899
Q ss_pred eEecCCceEEEEee-ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMD-LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 346 ~~~~~~~g~~~~~~-l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
++..+.+|+|+|++ ++...+.. +++..+++++||.+.||+.|+..+++++||++. .+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 318 EVFGGEHAPYLWVKPTQANISDR------DLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILAACERLQMAP 390 (400)
T ss_dssp EEEECSSSSEEEEECCCTTCCTT------THHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHHHHHHHHC--
T ss_pred eeeCCCCceEEEEeccCCCCCHH------HHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHHHHHHHHHHH
Confidence 98887788999999 77432221 466777777899999999997656789999964 48999999999999998
Q ss_pred hhh
Q 011801 425 QQD 427 (477)
Q Consensus 425 ~~~ 427 (477)
+++
T Consensus 391 ~~~ 393 (400)
T 3asa_A 391 ALQ 393 (400)
T ss_dssp ---
T ss_pred Hhh
Confidence 753
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=351.89 Aligned_cols=344 Identities=15% Similarity=0.172 Sum_probs=271.8
Q ss_pred cccccccccc---cccc-H--HHHHHHHHh-CCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 38 GGVIQLGLAE---NQLC-F--DLIKDWITK-NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 38 ~~~i~l~~~~---n~~~-~--~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++|+|+.+. +... + +.+.+.+.+ .... .....|++..|.+++|+++|+++....+ ..++
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~ 92 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVLK 92 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc-----------cccccCCCCCchHHHHHHHHHHHhcCCc--cccc
Confidence 4689999984 3222 2 455555444 2110 1235788888999999999999986443 2346
Q ss_pred CC--cEEEeCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PD--RIVMGGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~--~i~~t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
++ +|++|+|+++|+.+++ .+++++||.|+++.|+|+++...++.. |.+++.+++...+++.+|+++|++++++.
T Consensus 93 ~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 170 (397)
T 3fsl_A 93 QQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKTL- 170 (397)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHT-TCCEEEECCEETTTTEECHHHHHHHHTTC-
T ss_pred ccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHc-CCceEEEeeeeccCCcCcHHHHHHHHHhC-
Confidence 88 9999999999999995 456799999999999999999888877 99999999854467899999999998632
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEec
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.++. ....++..+.. ..+++++++|
T Consensus 171 --~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S 244 (397)
T 3fsl_A 171 --QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS----AGLPALVSNS 244 (397)
T ss_dssp --CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH----TTCCEEEEEE
T ss_pred --CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh----cCCCEEEEec
Confidence 2367888999999999999999999999999999999999999999887763 23345555443 4688999999
Q ss_pred CCcccCCCCceEEEEEe--CCHHHHH-HHHHh-----cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYS--FNDTVVN-CGRKM-----SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHH 334 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~--~~~~i~~-~~~~~-----~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~ 334 (477)
|||.+|++|+|+||+++ .+..+.. ..... ..+..++.++|.+++.++.+..+. +.++++.+++++++++
T Consensus 245 ~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (397)
T 3fsl_A 245 FSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQ 324 (397)
T ss_dssp CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 3443332 22222 234456789999999999986532 4567888999999999
Q ss_pred HHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 335 NFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 335 ~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
.+.+.|++. |+.+..+++|+|+|++++. +.+..+++++||.+.||+ |++++..++
T Consensus 325 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ris~~~~~~ 383 (397)
T 3fsl_A 325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLNT 383 (397)
T ss_dssp HHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EEEGGGCCT
T ss_pred HHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eEEEEecCH
Confidence 999999987 6888888899999998862 245667778899999873 999997788
Q ss_pred HHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAF 423 (477)
Q Consensus 411 e~l~~~l~~l~~~ 423 (477)
+++++++++|+++
T Consensus 384 ~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 384 ANVQRVAKAFAAV 396 (397)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhh
Confidence 8899999999876
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=352.69 Aligned_cols=322 Identities=18% Similarity=0.209 Sum_probs=259.1
Q ss_pred cccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHH--HHHHHHhcC--C----------CCeEEEcCC
Q 011801 78 DIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGAN--ELIMFCLAN--P----------GDAFLVPSP 143 (477)
Q Consensus 78 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al--~~i~~~l~~--~----------Gd~vlv~~P 143 (477)
....|++..|.++||++||++++ +++++|++|+|+++++ ++++.++++ | ||.|++++|
T Consensus 70 ~~~~Y~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p 141 (427)
T 3ppl_A 70 DVRNYGGLDGIVDIRQIWADLLG--------VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVP 141 (427)
T ss_dssp BTTSSCCSSCCHHHHHHHHHHHT--------SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEES
T ss_pred hhcCCCCCCCcHHHHHHHHHHhC--------CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCC
Confidence 35689998999999999999995 6789999999999999 588888876 6 999999999
Q ss_pred CccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcccCCCHHHHHHHHHHH-H
Q 011801 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT-NPSNPLGTTLDRDTLKSLVSFI-N 221 (477)
Q Consensus 144 ~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~-nP~NPtG~~~~~~~l~~l~~~~-~ 221 (477)
+|+.+...++.. |.++++++++.+ .+|+++|+++++ ..++++|+++ +||||||.+++.+++++|+++| +
T Consensus 142 ~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~-----~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~ 212 (427)
T 3ppl_A 142 GYDRHFSITERF-GFEMISVPMNED---GPDMDAVEELVK-----NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETA 212 (427)
T ss_dssp CCHHHHHHHHHT-TCEEEEEEEETT---EECHHHHHHHTT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCS
T ss_pred CcHHHHHHHHHc-CCEEEEeCCCCC---CCCHHHHHHHHh-----cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhh
Confidence 999999988877 999999999853 389999999884 2378888755 7899999999999999999999 9
Q ss_pred hcCeEEEecccccccccCCCC--cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--cc
Q 011801 222 DKNIHLVCDEIYAATVFSSPK--FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SF 297 (477)
Q Consensus 222 ~~~~~lI~De~y~~~~~~~~~--~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~ 297 (477)
++|++||+||+|+++.|.+.. ..++..+....+ ..+++++++||||. ++||+|+||++++++ +...+.... ..
T Consensus 213 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~ 289 (427)
T 3ppl_A 213 APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAG-NPNRFWAFTSTSKI-TLAGAGVSFFLTSAE-NRKWYTGHAGIRG 289 (427)
T ss_dssp STTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-CTTSEEEEEESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCcccccCCCCCCccchhhhhhccC-CCCcEEEEechhhc-cCcCccEEEEEcCHH-HHHHHHHHhhccc
Confidence 999999999999987777543 345555421000 45789999999999 679999999999654 444443332 23
Q ss_pred CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----C-CCeEecCCceEEEEeeccchhhccCchHH
Q 011801 298 GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----V-GINCLKSNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
..++++.|.++..++.+.+..++++++.++.++++++.+.+.|.+ . ++.+..+.+|+|+|++++.. . .
T Consensus 290 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~------~ 362 (427)
T 3ppl_A 290 IGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-T------A 362 (427)
T ss_dssp SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-C------H
T ss_pred CCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-h------H
Confidence 447889999999999984333778888899999999988888765 3 57777888999999999853 1 1
Q ss_pred HHHHHHHHHhcCeEEeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 373 IALWRTIVNDVKLNVSP-GSSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~p-g~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.++.+ .+.++||.++| |..|.. ..++++||+++..+++++++++++|++++++.
T Consensus 363 ~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 363 SRVAE-LAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 24554 45567999999 444542 25789999998778999999999999998753
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=343.06 Aligned_cols=335 Identities=18% Similarity=0.265 Sum_probs=264.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
+.++|+|+.++|+++ ++.+.+.+.+.- .....|++ .|..++|+++|++++ +++++|+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~v~ 80 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNL-------------DCIERYPD-ADYFHLHQALARHHQ--------VPASWIL 80 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTG-------------GGGGSCCC-TTCHHHHHHHHHHHT--------SCGGGEE
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHH-------------HHhhcCCC-CCHHHHHHHHHHHHC--------cCHHHEE
Confidence 567899999998764 455666666531 22456866 478999999999996 5678999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++.+++.++ +||.|+++.|+|+++...++.. |.+++.++++..++|.+ ++++.+.+ +.++++|
T Consensus 81 ~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~-l~~~~~~~------~~~~~~v 150 (364)
T 1lc5_A 81 AGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQL-TDAILEAL------TPDLDCL 150 (364)
T ss_dssp EESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCC-CTTHHHHC------CTTCCEE
T ss_pred ECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHc-CCeEEEEeCCcccccch-hHHHHHhc------cCCCCEE
Confidence 9999999999999998 7899999999999999888877 99999999875445554 34443332 2378899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++.++. ...+ ..+++++++|+||.+|++|+
T Consensus 151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~---~~~~----~~~~~i~~~s~sK~~~~~G~ 223 (364)
T 1lc5_A 151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFI---PALK----DNPHIWVLRSLTKFYAIPGL 223 (364)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSG---GGCT----TCTTEEEEEESTTTTTCTTT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchh---hHhc----cCCCEEEEEECchhhcCCcc
Confidence 9999999999999999999999999999999999999998766532222 2222 34678999999999999999
Q ss_pred eEEEEE-eCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 276 RVGIVY-SFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~-~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
|+||++ + ++.+.+.++.....+.++.++|.++..+|++.+ ++++.+++++++++.+.+.|+++ |+.+.++ .|
T Consensus 224 r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g 297 (364)
T 1lc5_A 224 RLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDSA----WQQATWHWLREEGARFYQALCQLPLLTVYPG-RA 297 (364)
T ss_dssp CCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-SS
T ss_pred ceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-CC
Confidence 999999 6 555555555554455688999999999998843 47778888999999999999987 8887654 45
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|++++.. .. ++++.+. ++||.+.||+.|+...++++||+++ ++++++++++.|++++++.
T Consensus 298 ~~~~~~~~~~--~~------~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 298 NYLLLRCERE--DI------DLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp SEEEEEESCT--TC------CHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC---
T ss_pred eEEEEECCCc--HH------HHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhcc
Confidence 7889988741 11 3566666 4599999999987656789999997 6888999999999887654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=367.50 Aligned_cols=356 Identities=18% Similarity=0.295 Sum_probs=276.6
Q ss_pred cccccccccccccHH-HHHHHHHhCCCCcccccccccccccccccC-CCCCcHHHHHHHHHHHhcccCCCCccC-CCcEE
Q 011801 39 GVIQLGLAENQLCFD-LIKDWITKNPYASICTAEGVEVFKDIAIFQ-DYHGLPEFRQAVAKFMGKGRGGRVTFD-PDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~-~~~i~ 115 (477)
++|+|+.+.+..+++ .+.++.... .. ..|+ +..|.+++|+++|+++.+..+..+..+ +++|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~--------------~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~ 168 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGA--------------VA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF 168 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHH--------------HT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE
T ss_pred hheeccCCCCCcCCcHHHHHHHHHH--------------Hh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE
Confidence 478898888776643 344443331 11 2455 667999999999999965423112233 47999
Q ss_pred EeCChHHHHHHHHHH-----hcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC--CCCcccCHHHHHHHHHHHHHh
Q 011801 116 MGGGATGANELIMFC-----LANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI--SNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 116 ~t~G~t~al~~i~~~-----l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~--~~~f~i~~~~l~~~~~~~~~~ 188 (477)
+|+|+++|+.+++.+ ++++||.|+++.|+|+++...++.. |.+++.++++. +++|.+|+++|++++.+
T Consensus 169 ~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---- 243 (533)
T 3f6t_A 169 PTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELK-DYELVEVDLHSYEKNDWEIEPNEIEKLKDP---- 243 (533)
T ss_dssp EEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGG-GSEEEEECCCEETTTTSEECHHHHHHHSCT----
T ss_pred EECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHc-CCeEEEEEecCCcccCCCCCHHHHHHHhCC----
Confidence 999999999999998 7899999999999999998888876 99999888864 56799999999988753
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH-hcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN-DKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~-~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++.+++++|+++|+ ++|++||+||+|+++.++. .++... ..+++++++|||
T Consensus 244 --~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~------~~~~~i~~~S~S 312 (533)
T 3f6t_A 244 --SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSV------VPYNTMLVYSYS 312 (533)
T ss_dssp --TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHH------SGGGEEEEEESH
T ss_pred --CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc---cCHhhc------CCCCEEEEecCc
Confidence 8999999999999999999999999999999 6899999999999876542 444443 347899999999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHH------------------------------------HHh--cccCCCchHHHHH--
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCG------------------------------------RKM--SSFGLVSSQTQYL-- 307 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~------------------------------------~~~--~~~~~vs~~~q~~-- 307 (477)
|.+|++|+|+||++++++.+.+.+ ++. ......+.+.|.+
T Consensus 313 K~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a 392 (533)
T 3f6t_A 313 KLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEA 392 (533)
T ss_dssp HHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHH
T ss_pred ccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 999999999999999776222111 111 1223467778877
Q ss_pred --HHHhcC-C---hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc-C--c-------hH
Q 011801 308 --LASMLS-D---DEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK-T--L-------EG 371 (477)
Q Consensus 308 --~~~~L~-~---~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~-~--~-------~~ 371 (477)
+...|. + +++ +.++++.+++++++++.+.+.|. .++.+..+++|+|+|++++...... . + ..
T Consensus 393 ~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 470 (533)
T 3f6t_A 393 LFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE 470 (533)
T ss_dssp HHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence 344454 1 223 56788899999999999999998 8888888999999999997532110 0 0 01
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+++..+++++||.+.||+.|+. +++++||+++..+++++++++++|+++++++.
T Consensus 471 ~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 471 QVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp HHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 235777888889999999999986 47899999998899999999999999998754
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=338.63 Aligned_cols=333 Identities=18% Similarity=0.316 Sum_probs=267.2
Q ss_pred CCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 36 NPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
+++++|||+.++|+++ ++.+.+.+.+. +.....|++ .+..++|+++|++++ +++++|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 81 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEG-------------IKNLGVYPD-VNYRRLNKSIENYLK--------LKDIGI 81 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHH-------------HHGGGSCCC-TTCHHHHHHHHHHHT--------CCSCEE
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHH-------------HHHhcCCCC-ccHHHHHHHHHHHhC--------CCcceE
Confidence 4667999999999885 45555544442 123456754 578999999999996 578999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
++|+|+++|+++++.++ |+|+++.|+|.++...++.. |.+++.++++.+++ +++++++++++ ++++
T Consensus 82 ~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~~~~l~~~l~-------~~~~ 147 (361)
T 3ftb_A 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKH-GVSVVFSYLDENMC--IDYEDIISKID-------DVDS 147 (361)
T ss_dssp EEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHHT-TCEEEEEECCTTSC--CCHHHHHHHTT-------TCSE
T ss_pred EEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHHc-CCeEEEeecCcccC--CCHHHHHHhcc-------CCCE
Confidence 99999999999999888 99999999999999988877 99999999886544 45688887764 2789
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.++ .. .+...... ..+++++++|+||.+|++|
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~-~~~~~~~~----~~~~~i~~~s~sK~~~~~G 221 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS-SSFVGEIK----NYSCLFIIRAMTKFFAMPG 221 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT-SSSGGGTT----TCSSEEEEEESSSTTSCGG
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc-cchhHhcc----cCCCEEEEeeChhhcCCCC
Confidence 999999999999999999999999999999999999999987765 22 33333332 4578899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecCCc
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKSNA 352 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~~~ 352 (477)
+|+||++..++.+.+.++.....+.++++.|.++..+|++. +++++.+++++++++.+.+.|+++ ++. +.++.+
T Consensus 222 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 297 (361)
T 3ftb_A 222 IRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHA 297 (361)
T ss_dssp GCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSS
T ss_pred cceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCC
Confidence 99999995566777766666556678999999999999974 347788889999999999999988 777 666554
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.|+|++++. . +..++++.+.++ ||.++||+.|+..+++++|++++ ++++++++++.|+++.+
T Consensus 298 -~~~~~~~~~-~------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 298 -NFVLCRLEN-I------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -SEEEEEESS-S------CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEcCC-C------CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 688998875 1 122566777665 99999999998777899999998 67888888888887764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=350.45 Aligned_cols=344 Identities=13% Similarity=0.173 Sum_probs=268.3
Q ss_pred ccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 38 GGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
.++|+|+.+.. .. +++.+.+.+.+... .....|.+..|.++||+++++++....+ ..+++++|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 106 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATL------------GTNMDYAPVTGIASFVEEAQKLCFGPTC--AALRDGRIA 106 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCC------------CSCCCCCCTTCCHHHHHHHHHHHHCSSC--HHHHTTCEE
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCc------------cccccCCCCCCcHHHHHHHHHHHcCCCc--hhhccCcee
Confidence 46899999874 33 23444455554311 2345788889999999999999853221 112378884
Q ss_pred --EeCChHHHHHHHH---HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 116 --MGGGATGANELIM---FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 116 --~t~G~t~al~~i~---~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
.|.|++++++.+. .++.++||.|++++|+|+.+...++.. |.+++.++++..++|.+|+++|++++++. ..
T Consensus 107 ~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~ 182 (409)
T 4eu1_A 107 SCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-GMELTPYSYYDPATKGLNLAGMLECLDKA---PE 182 (409)
T ss_dssp EEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-TCEEEEECCEETTTTEECHHHHHHHHHHS---CT
T ss_pred eeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEEEeecCcCCcCcHHHHHHHHHhC---CC
Confidence 5999999998764 445789999999999999999988877 99999999865568899999999998642 12
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC--CcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ..+++++++||||
T Consensus 183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK 258 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD----MVPNLIVAQSFSK 258 (409)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT----TSSCCEEEEECTT
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh----hCCcEEEEecCcc
Confidence 456677799999999999999999999999999999999999998877652 1234444433 4567899999999
Q ss_pred ccCCCCceEEEE--EeCCHH----HHHHHHHh--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHHHH
Q 011801 269 DMGLPGFRVGIV--YSFNDT----VVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHNFT 337 (477)
Q Consensus 269 ~~g~~G~RvG~i--~~~~~~----i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~l~ 337 (477)
.+|++|+|+||+ ++.++. +...+++. .....++.++|.++..+|.+.++. .+++++.+++++++++.+.
T Consensus 259 ~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 259 NFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp TSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 666665 44444432 233446789999999999986532 3447778899999999999
Q ss_pred HHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHH
Q 011801 338 KGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTL 413 (477)
Q Consensus 338 ~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l 413 (477)
+.|++.| +++..+++|+|+|++++. +++..+++++||.+.|| .|++++..+++++
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i 397 (409)
T 4eu1_A 339 SELKACGSVHDWSHIERQVGMMAYTGLTR-----------EQVELLRSEYHIYMTLN----------GRAAVSGLNSTNV 397 (409)
T ss_dssp HHHHHTTCCSCCHHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCcceecCCceEEEEeCCCH-----------HHHHHHHHcCCEEEcCC----------CEEEEEecCHhhH
Confidence 9999987 777788999999987752 35677888889999986 3999988888889
Q ss_pred HHHHHHHHHHH
Q 011801 414 QVALNRIAAFV 424 (477)
Q Consensus 414 ~~~l~~l~~~~ 424 (477)
++++++|++++
T Consensus 398 ~~~~~~l~~~l 408 (409)
T 4eu1_A 398 EYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.53 Aligned_cols=348 Identities=17% Similarity=0.190 Sum_probs=274.5
Q ss_pred cccccccccc--c----cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAE--N----QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~--n----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+. + +.+++.+.+.+.+.... ......|.+..|.+++|+++|+++...++ +.+++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 97 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRTCASRLALGDDS--PALQE 97 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhC----------hhhccCCCCCCCCHHHHHHHHHHHhcCCC--CccCC
Confidence 5689999887 2 23446666666552100 01245687788999999999999975444 34578
Q ss_pred CcEEE--eCChHHHHHHHHH--HhcCCC-----CeEEEcCCCccchHHHHhhhCCcE-EEEEeccCCCCcccCHHHHHHH
Q 011801 112 DRIVM--GGGATGANELIMF--CLANPG-----DAFLVPSPYYAAFDRDLSWRTGVQ-IVPVHCDISNNFKITREALEAA 181 (477)
Q Consensus 112 ~~i~~--t~G~t~al~~i~~--~l~~~G-----d~vlv~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~f~i~~~~l~~~ 181 (477)
++|++ |+|+++|+++++. .++++| |.|+++.|+|+++...++.. |.+ ++.++++..++|.+|+++|+++
T Consensus 98 ~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (412)
T 1ajs_A 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLSD 176 (412)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHc-CCceeEEEeeecCCCCccCHHHHHHH
Confidence 99999 9999999999964 456899 99999999999999888877 999 9999986446788999999999
Q ss_pred HHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC--CCcccHHHhhhhccCCCCc
Q 011801 182 YERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSVAEVIQEMDCNRDL 259 (477)
Q Consensus 182 ~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~~ 259 (477)
+++. +.+++++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+.. ..++
T Consensus 177 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~----~~~~ 249 (412)
T 1ajs_A 177 LENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS----EGFE 249 (412)
T ss_dssp HHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCC
T ss_pred HHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc----cCCc
Confidence 8642 3467788899999999999999999999999999999999999999876654 12345544432 3578
Q ss_pred EEEEecCCcccCCCCceEEEEEe---CCHH---HHHHHHH-h-cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHH
Q 011801 260 IHIIYSLSKDMGLPGFRVGIVYS---FNDT---VVNCGRK-M-SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKR 328 (477)
Q Consensus 260 viiv~SlSK~~g~~G~RvG~i~~---~~~~---i~~~~~~-~-~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~ 328 (477)
++++.||||.+|++|+|+||+++ +++. +...+.. . ..+..++.++|.++..+|++.++. ++++++.+++
T Consensus 250 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1ajs_A 250 LFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADR 329 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 89999999999988999999999 5442 3333333 2 234446889999999999886521 4567888999
Q ss_pred HHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE
Q 011801 329 LAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC 404 (477)
Q Consensus 329 l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~ 404 (477)
++++++.+.+.|++.+ +++..+.+|+|+|++++. +++..+++++||.+.|+ +|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris 388 (412)
T 1ajs_A 330 ILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPS----------GRIN 388 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTT----------SEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCH-----------HHHHHHHHhCCEEecCC----------cEEE
Confidence 9999999999999886 777788899999987751 35666777889999874 5999
Q ss_pred eccCCHHHHHHHHHHHHHHHhh
Q 011801 405 FANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 405 ~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++..+++++++++++|++++++
T Consensus 389 ~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 389 MCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHH
T ss_pred eeeCCHHHHHHHHHHHHHHHHh
Confidence 9966899999999999999865
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=340.95 Aligned_cols=313 Identities=22% Similarity=0.332 Sum_probs=263.9
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
...|.+..|.++||+++|+++. .+++++|++|+|+++|+.+++.+++++||.|+++.|+|+++...++.. |.
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-------~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 127 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSL-GA 127 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-------SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHT-TC
T ss_pred CcCCCCCCChHHHHHHHHHHhc-------cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CC
Confidence 3468888899999999999984 256899999999999999999999999999999999999998888876 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+++.++++.+++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 128 EVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred EEEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 99999998767889999999998853 789999999999999999999999999999999999999999998665
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~ 316 (477)
. ++.+..+. .+++++++||||.+|++|+|+||+++ ++.+.+.++....+ ...+.+.|.++...|...
T Consensus 202 ~--~~~~~~~~-------~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 270 (375)
T 3op7_A 202 L--DVPSIIEV-------YDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY- 270 (375)
T ss_dssp S--CCCCHHHH-------CTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH-
T ss_pred c--CCCchhhh-------cCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc-
Confidence 5 33443332 36788999999999999999999999 55666666554433 235678888888888753
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.++++.+++++++++.+.+.|++. ++.+..+.+|+++|+.++.... ..+++..+++++||.+.||+.|+.
T Consensus 271 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~~g~~~~~ 342 (375)
T 3op7_A 271 --QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMP------MEDFCLQLLQEHGVLLVPGNRFER 342 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSC------HHHHHHHHHHHHCEECEEGGGGTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCC------HHHHHHHHHHhCCEEEeChhhhCC
Confidence 5567888888999999999999986 7888888888888988874321 235778888788999999998874
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++|++++. +++++++++++|++++++.
T Consensus 343 --~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 343 --DGYVRLGFAC-EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp --TTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred --CCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 7899999986 6699999999999999764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=331.04 Aligned_cols=322 Identities=16% Similarity=0.235 Sum_probs=254.1
Q ss_pred CCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 35 QNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
.++.++|+|+.|+|+++ ++.+.+.+.+.. .....|++ .|.+++|+++|++++ +++++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~ 70 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAA-------------ARINRYPF-DAEPRVMRKLAEHFS--------CPEDN 70 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHG-------------GGTTSCCT-THHHHHHHHHHHHHT--------SCGGG
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhh-------------hhhccCCC-CchHHHHHHHHHHhC--------cCHHH
Confidence 45678999999999985 466777666531 23557864 589999999999986 56889
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++++.+++.++ +||.|+++.|+|+++...++.. |++++.++++. +|.+|+++++++ .+++
T Consensus 71 i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~--------~~~~ 137 (337)
T 3p1t_A 71 LMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVS-GLRHFEIGLTD--DLLLDPNDLAQV--------SRDD 137 (337)
T ss_dssp EEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTTS-CCEEEEECBCT--TSSBCHHHHTTC--------CTTE
T ss_pred EEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHhh--------cCCC
Confidence 999999999999999988 9999999999999999888877 99999999864 578999998765 2678
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
++++++|+||||.+++.+++.+|+ +++++ +|+||+|+++.+.... . .. ..+++++++|+||.+|++
T Consensus 138 ~v~i~~p~nptG~~~~~~~l~~l~---~~~~~-~ivDea~~~~~~~~~~--~----~~----~~~~~i~~~S~sK~~g~~ 203 (337)
T 3p1t_A 138 CVVLANPSNPTGQALSAGELDQLR---QRAGK-LLIDETYVDYSSFRAR--G----LA----YGENELVFRSFSKSYGLA 203 (337)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHH---HHCSE-EEEECTTGGGSSCSSS--C----CC----CBTTEEEEEESSSTTCCT
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHH---HhCCc-EEEECCChhhcccccc--c----cc----cCCCEEEEeeCchhccCc
Confidence 999999999999999977766655 56776 5669999975443321 1 11 346789999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+|+||++++++ +...+.+....+.++.+.|.++..+|++.+. +.+..+++.++++.+.+.|+++|+.+.++.++
T Consensus 204 G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 278 (337)
T 3p1t_A 204 GLRLGALFGPSE-LIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGYRVASSEAN 278 (337)
T ss_dssp TTCCEEEECCHH-HHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSS
T ss_pred chheEEEEeCHH-HHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcCEECCCCCe
Confidence 999999999554 5555555555666888999999999988543 34455566777889999999999988777765
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|+..+.. .++ ...+.++||.++||+.|+. ++++|++++ ++++++.+++.|+++.+
T Consensus 279 -~~~~~~~~~---------~~~-~~~l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 279 -FVLVENAAG---------ERT-LRFLRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -EEEEECTTT---------HHH-HHHHHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred -EEEEEcCCH---------HHH-HHHHHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 667776531 123 3445677999999998864 689999998 78999999999998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.79 Aligned_cols=344 Identities=16% Similarity=0.196 Sum_probs=266.3
Q ss_pred cccccccccc--cc----ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAE--NQ----LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~--n~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+. ++ .+++.+.+.+.+.-. . .....|.+..|.+++|+++|+++....+ ..+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~-----~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 92 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE------N-----ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALIND 92 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHH------H-----CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcC------c-----ccccCCCCCCCCHHHHHHHHHHHhcCCC--Ccccc
Confidence 4689999887 22 234556666554200 0 0234687888999999999999965332 22468
Q ss_pred CcEEE--eCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVM--GGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~--t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|++ |+|+++|+++++.++ ..+||.|+++.|+|+++...++.. |.+++.++++..++|.+|+++|++++++.
T Consensus 93 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 169 (396)
T 2q7w_A 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEA-- 169 (396)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred ccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHc-CCceEEEecccCCCCCcCHHHHHHHHHhC--
Confidence 89998 999999999998765 469999999999999999888877 99999999864457889999999988631
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC-CCcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS-PKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~-~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+.. ..+++++++||
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 244 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA----MHKELIVASSY 244 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH----HCSCEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHh----cCCcEEEEEec
Confidence 1246788889999999999999999999999999999999999999876653 12234443332 24688999999
Q ss_pred CcccCCCCceEEEEEe--CCH----HHHHHHHH--hcccCCCchHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYS--FND----TVVNCGRK--MSSFGLVSSQTQYLLASMLSDD----EFVDNFLVETSKRLAKRHH 334 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~--~~~----~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~----~~~~~~~~~~~~~l~~r~~ 334 (477)
||.+|++|+|+||+++ +++ .+...+.. ...+...+.++|.++..+|++. .+ ++++++.+++++++++
T Consensus 245 sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~ 323 (396)
T 2q7w_A 245 SXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQRIQRMRQ 323 (396)
T ss_dssp TTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-CHHHHHHH
T ss_pred cccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999997 333 33333332 2344445889999999999886 22 4567888889999999
Q ss_pred HHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCH
Q 011801 335 NFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD 410 (477)
Q Consensus 335 ~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~ 410 (477)
.+.+.|++.| +++..+.+|+|+|++++. +.+..+++++||.+.|| +||+++..++
T Consensus 324 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 382 (396)
T 2q7w_A 324 LFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRVNVAGMTP 382 (396)
T ss_dssp HHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceEEEeecCH
Confidence 9999999987 777788899999998752 24556677789999874 6999986689
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|++++
T Consensus 383 e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 383 DNMAPLCEAIVAVL 396 (396)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998763
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=344.88 Aligned_cols=321 Identities=15% Similarity=0.226 Sum_probs=256.1
Q ss_pred cccc-CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHH--HHHHHhcC--C---------CCeEEEcCCC
Q 011801 79 IAIF-QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANE--LIMFCLAN--P---------GDAFLVPSPY 144 (477)
Q Consensus 79 ~~~Y-~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~--~i~~~l~~--~---------Gd~vlv~~P~ 144 (477)
...| ++..|.++||+++|++++ +++++|++|+|+++++. +++.++++ | ||.|++++|+
T Consensus 62 ~~~Yp~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~ 133 (423)
T 3ez1_A 62 LRNYPGGVAGLPSARALFAGYLD--------VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPG 133 (423)
T ss_dssp TTSSCSCTTCCHHHHHHHHHHTT--------SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESC
T ss_pred hhCCCCCCCChHHHHHHHHHHhC--------CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCC
Confidence 4679 788899999999999985 67899999999999998 88888887 8 5999999999
Q ss_pred ccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE-eCCCCCcccCCCHHHHHHHHHHH-Hh
Q 011801 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII-TNPSNPLGTTLDRDTLKSLVSFI-ND 222 (477)
Q Consensus 145 y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii-~nP~NPtG~~~~~~~l~~l~~~~-~~ 222 (477)
|+.+...++.. |.++++++++.+ .+|+++|++++++ +.++++|++ ++||||||.+++.+++++|+++| ++
T Consensus 134 y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 205 (423)
T 3ez1_A 134 YDRHFLLLQTL-GFELLTVDMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAA 205 (423)
T ss_dssp CHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSS
T ss_pred cHHHHHHHHHc-CCEEEeccCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhc
Confidence 99999988887 999999998753 4899999999852 237898865 48999999999999999999999 99
Q ss_pred cCeEEEecccccccccCC---CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--cc
Q 011801 223 KNIHLVCDEIYAATVFSS---PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SF 297 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~~~---~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~ 297 (477)
+|++||+||+|..+.|.. ..+.++..+....+ ..+++++++||||. +++|+|+||++++++ +...+.... ..
T Consensus 206 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-~~~~~~~~~~~~~ 282 (423)
T 3ez1_A 206 PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAG-YPDRAFVFASTSKI-TFAGAGLGFVASSED-NIRWLSKYLGAQS 282 (423)
T ss_dssp TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHT-CTTSEEEEEESTTT-SCSSSSCEEEEECHH-HHHHHHHHHHHSC
T ss_pred cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccC-CCCeEEEEeCchhh-ccCCcceEEEEeCHH-HHHHHHHHHhhhc
Confidence 999999999999655544 23445555421100 45789999999999 579999999999665 444444332 22
Q ss_pred CCCchHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhh----CC--CeEecCCceEEEEeeccchhhccCc
Q 011801 298 GLVSSQTQYLLASMLSD--DEFVDNFLVETSKRLAKRHHNFTKGLEQ----VG--INCLKSNAGLFFWMDLRHLLKEKTL 369 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~--~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~g--i~~~~~~~g~~~~~~l~~~~~~~~~ 369 (477)
..++.+.|.++..+|.+ ..+ .+++++.++.++++++.+.+.|.+ .| +.+..+.+|+|+|++++.. .
T Consensus 283 ~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~---- 356 (423)
T 3ez1_A 283 IGPNKVEQARHVKFLTEYPGGL-EGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-V---- 356 (423)
T ss_dssp SCCCHHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-C----
T ss_pred cCCCHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-c----
Confidence 34788999999999987 544 677888888888888887776654 55 6777888999999999853 1
Q ss_pred hHHHHHHHHHHHhcCeEEeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 370 EGEIALWRTIVNDVKLNVSP-GSSFQC---TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~p-g~~f~~---~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
..++ ...+.++||.++| |+.|.. ..++++||+++..+++++++++++|++++++.
T Consensus 357 --~~~~-~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 357 --ADRV-VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp --HHHH-HHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHH-HHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1133 4455677999999 666653 24689999998669999999999999998753
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=334.42 Aligned_cols=326 Identities=18% Similarity=0.271 Sum_probs=260.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
..+|||+.++|+++ ++.+.+.+.+. +.....|++..+ .++|+++|++++ +++++|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 72 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVEN-------------LNCIRHYPEPDA-GTLRQMLAKRNS--------VDNNAILV 72 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHT-------------GGGGGSCCCTTC-HHHHHHHHHHTT--------CCGGGEEE
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHh-------------HhHHhcCCCCcH-HHHHHHHHHHhC--------cCHHHEEE
Confidence 57899999999886 45566666553 124567888777 999999999986 57899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec-cCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC-DISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~-~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++. ||.|+++.|+|..+...++.. |++++.+++ +..+++.+ .++++|
T Consensus 73 t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~----------------~~~~~v 133 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMY-EHEVCFYPSNEDIGEADF----------------SNMDFC 133 (350)
T ss_dssp ESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHT-TCEEEEEETTSCGGGSCC----------------TTCSEE
T ss_pred cCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHc-CCeEEEEecCCccccCcc----------------CCCCEE
Confidence 9999999999999987 999999999999999888877 999999998 64344433 178899
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|++.|+++ +||+||+|+++.+.+.... .... ..+++++++||||.+|++|+
T Consensus 134 ~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~---~~~~----~~~~~i~~~S~sK~~~~~G~ 204 (350)
T 3fkd_A 134 WLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP---ADIK----GRKNLVMVYSFSHAYGIPGL 204 (350)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG---GGGT----TCSSEEEEEESHHHHSCGGG
T ss_pred EEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhh---HHhh----cCCCEEEEecCchhccCcch
Confidence 9999999999999999999999988765 9999999998766544321 1222 45788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChh-hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDE-FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~-~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g 353 (477)
|+||+++ ++.+.+.+......+.++.+.|.++..+|++.+ + .++.++.. ++++.+.+.|+++ |+.+.++. |
T Consensus 205 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-~ 277 (350)
T 3fkd_A 205 RIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQF----TLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-T 277 (350)
T ss_dssp CCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTT----CCCHHHHH-HHHHHHHHHHHHSTTEEECCCS-S
T ss_pred heEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHH----HHHHHHHH-HHHHHHHHHHhcCCCcEECCCC-C
Confidence 9999999 556666666665566689999999999998765 3 22333333 7778899999988 88876655 4
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.|+|++++.. +..++++.+.+++||.++||+.|+...++++||+++ ++++++++++.|++++++++.
T Consensus 278 ~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~~ 344 (350)
T 3fkd_A 278 TFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKYEG 344 (350)
T ss_dssp SEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC---
T ss_pred cEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHhcc
Confidence 6888888753 123577777775799999999998777899999998 788999999999999987654
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=348.20 Aligned_cols=354 Identities=18% Similarity=0.266 Sum_probs=260.5
Q ss_pred ccccccccccccccHH---HHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 38 GGVIQLGLAENQLCFD---LIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
.++|+|+.+.+...+. .+.+.+.+... ++ ........|++..|.++||+++|+++.+.+| +.+++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i 101 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVE------SG-KAADALCNYDGPQGKTALLNALAVLLRETLG--WDIEPQNI 101 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHH------HT-HHHHHHHSTTCTTSHHHHHHHHHHHHHHHHC--CCCCGGGE
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhh------CC-cccceeeccCCCCCcHHHHHHHHHHHHHHhC--CCCCcccE
Confidence 4789999997766432 33333332100 00 0001234799999999999999999988777 45789999
Q ss_pred EEeCChHHHHHHHHHHhcCCCC-----eEEEc-CCCccchHHHHhhh-----CCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLANPGD-----AFLVP-SPYYAAFDRDLSWR-----TGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd-----~vlv~-~P~y~~~~~~~~~~-----~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
++|+|+++|+++++.+++++|| .|+++ +|+|+++...+... .+..+.+++.+ ..+|.+|+++|+ +.
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~--~~ 178 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG-QFKYHVDFEHLH--IG 178 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG-EEEEECCGGGCC--CC
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc-ccccccCHHHhc--cc
Confidence 9999999999999999999987 89997 99999987654211 14455555532 125778988887 32
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
.++++|++++||||||.+++.+++++|+++|+++|+++|+||+|+.. +.+..+.+... . ..++++++
T Consensus 179 ------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~--~----~~~~~i~~ 245 (417)
T 3g7q_A 179 ------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARP--L----WNPNIILC 245 (417)
T ss_dssp ------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCC--C----CCTTEEEE
T ss_pred ------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccc-ccccccccccc--C----CCCCEEEE
Confidence 37899999999999999999999999999999999999999999853 22211111110 0 34789999
Q ss_pred ecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDEFVDNFLVE-TSKRLAKRHHNFTKGL 340 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~-~~~~l~~r~~~l~~~L 340 (477)
+|||| ++++|+|+||++++++ +.+.+..... ....+++.|.++..++.+.++ .+++.+ .++.++++++.+.+.|
T Consensus 246 ~s~sK-~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSK-LGLPGSRCGIIIANDK-TITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGG-GTCTTSCCEEEECCHH-HHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred Eechh-ccCCCcceEEEEeCHH-HHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6889999999999554 4444443322 233678999999999998876 444444 6778888888888888
Q ss_pred hhC----CCeEecCCceEEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-------CCEEEEEeccC
Q 011801 341 EQV----GINCLKSNAGLFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE-------PGWFRVCFANM 408 (477)
Q Consensus 341 ~~~----gi~~~~~~~g~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~-------~~~~Rl~~~~~ 408 (477)
.+. |+.+..+.+|+|+|++++. ..+ ..++++.+ .++||.++||+.|.... ++++||+++.
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~- 394 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPIT------TELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP- 394 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSSC------HHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS-
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCCC------HHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecC-
Confidence 763 6888888999999999985 221 22466665 56799999999987543 5799999997
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 011801 409 DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~~ 427 (477)
+++++++++++|++++++.
T Consensus 395 ~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 395 EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=370.35 Aligned_cols=353 Identities=19% Similarity=0.251 Sum_probs=282.4
Q ss_pred ccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.+++ +.+.+.+.+... .....|++. ..++|+++++++.+.+| +.+++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~ 94 (392)
T 3b1d_A 31 PQLLPAWIADMDFEVMPEVKQAIHDYAE------------QLVYGYTYA--SDELLQAVLDWEKSEHQ--YSFDKEDIVF 94 (392)
Confidence 478999999876643 445555444211 123467654 78999999999987766 4467899999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++|+.+++.++.++||.|+++.|+|+++...++.. |.+++.++++. +++|.+|+++|++++++. ++++|
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v 168 (392)
T 3b1d_A 95 VEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLN-NRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLY 168 (392)
Confidence 999999999999999999999999999999999888776 99999998853 345889999999988632 67889
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+..+ ..+++++++||||.+|++|+
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~ 245 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD---FKDFALVLSSATKTFNIAGT 245 (392)
Confidence 999999999999999999999999999999999999999987776555555444220 14778999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcc-c--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-C-CCeEecC
Q 011801 276 RVGIVYSFNDTVVNCGRKMSS-F--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-V-GINCLKS 350 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~-~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-~-gi~~~~~ 350 (477)
|+||++++++.+.+.+..... + +.+++++|.++..+|.+. ++++++.+++++++++.+.+.|++ + |+.+..+
T Consensus 246 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (392)
T 3b1d_A 246 KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP 322 (392)
Confidence 999999976655555444332 2 246778899888888753 345778888899999999999987 4 8888889
Q ss_pred CceEEEEeeccch-hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 351 NAGLFFWMDLRHL-LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 351 ~~g~~~~~~l~~~-~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+++++|++++.. .+ ..++++.+++++||.+.||+.|+...++++||+++. +++++++++++|+++++
T Consensus 323 ~~~~~~~i~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 323 QGTYLIWLDFSDYGLT------DDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 9999999998742 11 124667777677999999999976567899999986 78999999999998875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=343.86 Aligned_cols=348 Identities=17% Similarity=0.210 Sum_probs=267.6
Q ss_pred cccccccccc----c--cccHHHHHHHHHh-CCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 38 GGVIQLGLAE----N--QLCFDLIKDWITK-NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 38 ~~~i~l~~~~----n--~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++|+|+.+. | ..+++.+.+.+.+ .-.. .....|++..|.+++|+++|+++...+| +.++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~ 95 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-----------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQ 95 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-----------ccccCCCCCCCcHHHHHHHHHHHhcCCC--CCCC
Confidence 4679998875 2 1344556666554 3210 1234687888999999999999976544 4457
Q ss_pred CCcEEE--eCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVM--GGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~--t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
+++|++ |+|+++|+++++ ..++.+||.|++++|+|+++...++.. |.+++.+++...+++.+|+++|++++++.
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 173 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKA- 173 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHHHHHHS-
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHc-CceEEEEeeecCCCCccCHHHHHHHHHhC-
Confidence 899999 999999999984 444579999999999999999988877 99999999822246889999999998652
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC--CCcccHHHhhhhccCCCC--cEEE
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS--PKFTSVAEVIQEMDCNRD--LIHI 262 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~--~~~~s~~~~~~~~~~~~~--~vii 262 (477)
..+..++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+... ..+ ++++
T Consensus 174 --~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 248 (412)
T 1yaa_A 174 --PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK---LSTVSPVFV 248 (412)
T ss_dssp --CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH---TTTTCCEEE
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc---CCCCcceEE
Confidence 1123455559999999999999999999999999999999999999876654 122344443321 222 7999
Q ss_pred EecCCcccCCCCceEEEEE--e----CCHH----HHHHHHH-h-cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVY--S----FNDT----VVNCGRK-M-SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSK 327 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~--~----~~~~----i~~~~~~-~-~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~ 327 (477)
++||||.+|++|+|+||++ + .++. +...+.. . ..+...+.+.|.++..+|++.++. ++++++.++
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999998899999998 6 2443 4444443 2 234445789999999999887521 457888899
Q ss_pred HHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 328 RLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
+++++++.+.+.|++.+ +++..+.+|+|+|++++. +.+..+++++||.+.| ++||
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~----------~~Ri 387 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVA----------SGRA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCT----------TSEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCH-----------HHHHHHHHhCCEEecc----------CcEE
Confidence 99999999999999876 888888899999987652 1236677778999986 3799
Q ss_pred EeccCCHHHHHHHHHHHHHHHhh
Q 011801 404 CFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 404 ~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+++..+++++++++++|+++++.
T Consensus 388 s~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 388 SIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EEccCCHhHHHHHHHHHHHHHHh
Confidence 99866899999999999998864
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=344.27 Aligned_cols=318 Identities=16% Similarity=0.193 Sum_probs=255.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE--eCChHHHHHH--HHHHhcCCCCeEEEcCCCccchHHHHh-
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM--GGGATGANEL--IMFCLANPGDAFLVPSPYYAAFDRDLS- 153 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~--t~G~t~al~~--i~~~l~~~Gd~vlv~~P~y~~~~~~~~- 153 (477)
...|.+..|.+++|+++++++..... ..+++++|++ |+|+++|+++ .+.+++.+||.|++++|+|+.+...++
T Consensus 87 ~~~Y~~~~G~~~lr~~ia~~l~g~~~--~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~ 164 (448)
T 3meb_A 87 NKEYPPVAGFPLFLEAAQFLMFGKDS--KAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDK 164 (448)
T ss_dssp CCSCCCTTCCHHHHHHHHHHHHCTTC--HHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHhcCCCc--cccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHh
Confidence 35788888999999999999831100 0123689999 9999999988 455678899999999999999998888
Q ss_pred ---hhCCcEEEEEeccCCC-CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEe
Q 011801 154 ---WRTGVQIVPVHCDISN-NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVC 229 (477)
Q Consensus 154 ---~~~g~~~~~v~~~~~~-~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~ 229 (477)
.. |.+++.+++...+ +|.+|+++|++++++. ..+.+++++++||||||.+++.+++++|+++|+++|+++|+
T Consensus 165 ~~~~~-G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~ 240 (448)
T 3meb_A 165 VFNKL-KVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFF 240 (448)
T ss_dssp HHCTT-TSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hHHhC-CCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 76 9999999984344 6899999999998752 22577889999999999999999999999999999999999
Q ss_pred cccccccccCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEE--Ee--------CCH----HHHHHHHH
Q 011801 230 DEIYAATVFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIV--YS--------FND----TVVNCGRK 293 (477)
Q Consensus 230 De~y~~~~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i--~~--------~~~----~i~~~~~~ 293 (477)
||+|.++.+++. ...++..+.. ..+++++++||||.||++|+|+||+ ++ +++ .+...+.+
T Consensus 241 Deay~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~ 316 (448)
T 3meb_A 241 DSAYQGFATGSFEADAFAVRMFVD----AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL 316 (448)
T ss_dssp EESCTTTSSSCHHHHTHHHHHHHH----TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred ecccccccCCCcccCchhHHHHhh----cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH
Confidence 999998776541 2234444433 4578899999999999999999998 66 454 34444433
Q ss_pred h--cccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHHHHHHHhhCC---------CeEecCCceEEEEee
Q 011801 294 M--SSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHNFTKGLEQVG---------INCLKSNAGLFFWMD 359 (477)
Q Consensus 294 ~--~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~l~~~L~~~g---------i~~~~~~~g~~~~~~ 359 (477)
. ..+..++.+.|.+++.+|.+.++. .+++++.+++++++++.+.+.|++.| +.+..+++|+|+|++
T Consensus 317 ~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 396 (448)
T 3meb_A 317 QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTG 396 (448)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECC
T ss_pred HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecC
Confidence 2 334457789999999999987542 24478888999999999999999873 555678899999998
Q ss_pred ccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 360 l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++. +++..+++++||.+.||+ + ||+++..+++++++++++|++++++
T Consensus 397 ~~~-----------~~~~~ll~~~gV~v~~G~-------g--Ris~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 397 LTP-----------EHVDYLKEKWSIYLVKAG-------G--RMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CCH-----------HHHHHHHHHHCEEECSGG-------G--EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred CCH-----------HHHHHHHHhCCEEEeCCC-------c--EEEEecCCHHHHHHHHHHHHHHHHh
Confidence 852 466778888899999985 2 9999987888899999999999974
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=345.29 Aligned_cols=347 Identities=17% Similarity=0.240 Sum_probs=250.6
Q ss_pred hhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCc-----HHHHHHHHH
Q 011801 23 WKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGL-----PEFRQAVAK 97 (477)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~-----~~lr~aia~ 97 (477)
-++|+.-|.....+..++|+|+.+++..+.+ +++...-..... .........|++..|. ++||++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~---~~~~~~~~~~~~----~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~ 79 (391)
T 3bwn_A 7 SRKPEKISNKNIPMSDFVVNLDHGDPTAYEE---YWRKMGDRCTVT----IRGCDLMSYFSDMTNLCWFLEPELEDAIKD 79 (391)
T ss_dssp -----------CCTTTSCEECSSCCCGGGHH---HHHHTGGGSCEE----ECTTTTCSSCSCTTSSSTTSCHHHHHHHHH
T ss_pred ccCccccCCCCccCCCCeeEcCCCCCCCCCC---HHHHHhHHHHhh----cCccchhhcCCCCCCcccccCHHHHHHHHH
Confidence 4567777766555677899999998765543 333332100000 0001134579999998 999999999
Q ss_pred HHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHhcCCCC----eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc
Q 011801 98 FMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCLANPGD----AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK 172 (477)
Q Consensus 98 ~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l~~~Gd----~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~ 172 (477)
|++ .+| +.+++ ++|++|+|+++++.+++.+|+++|| .|++++|+|+.|...++.. |+++++++++.+ ++.
T Consensus 80 ~~~-~~g--~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~d~~-~l~ 154 (391)
T 3bwn_A 80 LHG-VVG--NAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYV-RSGMYKWEGDAW-GFD 154 (391)
T ss_dssp HHH-HHC--SBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTT-CBTTEEEEEEST-TCC
T ss_pred HHH-hcC--CCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHc-CCeEEEecCCHH-HcC
Confidence 998 455 55666 5999999999999999999999999 9999999999999988877 999998888642 332
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
..++|+|+++|||||||.+++ +|++.+.+++++||+||+|.+ . .+.++..
T Consensus 155 ----------------~~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~--~~~~l~~---- 204 (391)
T 3bwn_A 155 ----------------KKGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---P--HYTPITR---- 204 (391)
T ss_dssp ----------------CCSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---T--TTSCCCC----
T ss_pred ----------------CCCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---C--CCCcccc----
Confidence 027899999999999999997 344422233499999999972 1 1122211
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChh-h------HHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDE-F------VDNFLV 323 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~-~------~~~~~~ 323 (477)
..+++++++||||.+|+||+|+||+++.++.+.+.+.+... .+.++.+.|.++..+|++.. + .+.+++
T Consensus 205 ---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 281 (391)
T 3bwn_A 205 ---RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFK 281 (391)
T ss_dssp ---CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHH
T ss_pred ---CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHH
Confidence 24788999999999999999999999855555555554433 35688999999999998642 1 145688
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeEec-------------CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC
Q 011801 324 ETSKRLAKRHHNFTKGLEQV-GINCLK-------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP 389 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~-gi~~~~-------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p 389 (477)
+.++.++++++.+.+.|++. |+.+.. +.+|+|+|++++.. +.+..+++++||.++|
T Consensus 282 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~v~p 351 (391)
T 3bwn_A 282 YGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVMSRA 351 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEEEcc
Confidence 88999999999999999987 555543 34567999999741 1344566778999999
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 390 GSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 390 g~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+.|+. .++++|||++. +++++++++++|++++++
T Consensus 352 g~~fg~-~~~~iRis~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 352 GERCGS-DKKHVRVSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp GGGGTC-CTTEEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred CCCCCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 999975 57899999996 899999999999988754
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=327.48 Aligned_cols=334 Identities=16% Similarity=0.212 Sum_probs=261.9
Q ss_pred cccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 40 VIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 40 ~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.|||+.++|+++ ++.+.+.+.+.-+. . ......|++..+ .++|+++|+++.+.+| +.+++++|++|+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~~~-~~l~~~la~~l~~~~g--~~~~~~~v~~~~ 99 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDK-----I----ATELNRYPERDA-VELRDELAAYITKQTG--VAVTRDNLWAAN 99 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHH-----H----GGGTTSCCCTTC-HHHHHHHHHHHHHHHC--CCCCGGGEEEES
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHh-----c----ccccccCCCccH-HHHHHHHHHhhhhccc--CCCChHhEEECC
Confidence 399999999774 35566655542100 0 012456877666 8999999999988766 346788999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~ 198 (477)
|+++++++++.++.++||.|++++|+|+++...++.. |.+++.++.+ ++|.+|++++++++++. ++++|+++
T Consensus 100 G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~ 171 (369)
T 3cq5_A 100 GSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGT-HTEFIAVSRG--ADFRIDMDVALEEIRAK-----QPDIVFVT 171 (369)
T ss_dssp HHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHT-TCEEEEEECC--TTSSCCHHHHHHHHHHH-----CCSEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCC--cCCCCCHHHHHHHhhcc-----CCCEEEEe
Confidence 9999999999999999999999999999999888876 9999999965 46789999999998753 68899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCC-cEEEEecCCcccCCCCceE
Q 011801 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD-LIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 199 nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~-~viiv~SlSK~~g~~G~Rv 277 (477)
+|+||||.+++.+++.+|++. +++++|+||+|+++.+. .+.....+ ..+ ++++++|+||.+|++|+|+
T Consensus 172 ~~~nptG~~~~~~~l~~l~~~---~~~~li~De~~~~~~~~----~~~~~~~~----~~~~~~i~~~s~sK~~~~~G~r~ 240 (369)
T 3cq5_A 172 TPNNPTGDVTSLDDVERIINV---APGIVIVDEAYAEFSPS----PSATTLLE----KYPTKLVVSRTMSKAFDFAGGRL 240 (369)
T ss_dssp SSCTTTCCCCCHHHHHHHHHH---CSSEEEEECTTGGGCCS----CCGGGGTT----TCTTTEEEEEESSSTTSCGGGCC
T ss_pred CCCCCCCCCCCHHHHHHHHHh---CCCEEEEECCchhhcCC----cchHHHHh----hCCCCEEEEEechHhcCCcccce
Confidence 999999999997777777764 45999999999976543 22222322 335 8899999999999999999
Q ss_pred EEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEE
Q 011801 278 GIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357 (477)
Q Consensus 278 G~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~ 357 (477)
||++++++ +.+.+......+.++.+.|.++..+|++.+ ++++.+++++++++.+.+.|++.|+++.++ .|+|+|
T Consensus 241 G~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~ 314 (369)
T 3cq5_A 241 GYFVANPA-FIDAVMLVRLPYHLSALSQAAAIVALRHSA----DTLGTVEKLSVERVRVAARLEELGYAVVPS-ESNFVF 314 (369)
T ss_dssp EEEEECTH-HHHHHHTTSCTTCSCHHHHHHHHHHHHTHH----HHHTHHHHHHHHHHHHHHHHHHHTCEEECC-SSSEEE
T ss_pred EEEEeCHH-HHHHHHHcCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCC-CCeEEE
Confidence 99999765 445555444444588899999999998743 467778889999999999998889888754 457899
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++++. + ..++++.+ .++||.+.||. .++++|++++ +++++++++++|+++++.
T Consensus 315 ~~~~~--~------~~~l~~~l-~~~gi~v~~~~-----~~~~iRis~~--~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 315 FGDFS--D------QHAAWQAF-LDRGVLIRDVG-----IAGHLRTTIG--VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp EECCS--S------HHHHHHHH-HHTTEECBCCS-----CTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred EECCC--C------HHHHHHHH-HHCCEEEEECC-----CCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 98861 1 12466666 46799999981 3679999998 789999999999998754
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=344.60 Aligned_cols=364 Identities=18% Similarity=0.242 Sum_probs=270.2
Q ss_pred cccc-ccccccccccHHHHHH---HHHhCCCCccccccccc-c--cccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 38 GGVI-QLGLAENQLCFDLIKD---WITKNPYASICTAEGVE-V--FKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 38 ~~~i-~l~~~~n~~~~~~i~~---~~~~~~~~~~~~~~~~~-~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++| +|+.+.+..+++..+. .+.+.-.. ..+|-. . ......|++..|.+++|+++|+|+.+.+| +.++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGND---NDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYD--WNLT 105 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSC---SCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhc---cccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcC--CCCC
Confidence 4689 9999876665443333 33321000 000000 0 01235799999999999999999988777 4578
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--------------eEEEc-CCCccchHHH------HhhhCCcEEEEEeccCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGD--------------AFLVP-SPYYAAFDRD------LSWRTGVQIVPVHCDISN 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd--------------~vlv~-~P~y~~~~~~------~~~~~g~~~~~v~~~~~~ 169 (477)
+++|++|+|+++|+.+++.+++++|| .|+++ +|+|+.+... +... |..+++++++.++
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAV-LPHIDEVTHDGEE 184 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEEC-CCEEEEEEETTEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhcc-CceEEeccccccc
Confidence 99999999999999999999999998 78876 9999988763 2333 8888888887422
Q ss_pred ---CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 170 ---NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 170 ---~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
+|.+|+++|++++++. ..++++|++++|+||||.+++.+++++|+++|+++|++||+||+|+.. +....+...
T Consensus 185 g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~ 260 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDA 260 (444)
T ss_dssp EEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCC
T ss_pred CccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccc
Confidence 4789999999886432 237899999999999999999999999999999999999999999853 222111111
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
.. . ..+++++++||||. +++|+|+||++++++ +...+.... .....+++.|.++..++.+.++ ..+..+
T Consensus 261 ~~--~----~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 331 (444)
T 3if2_A 261 HL--N----WDNNTILCFSLSKI-GLPGMRTGIIVADAK-VIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQLSDN 331 (444)
T ss_dssp CC--C----CCTTEEEEEESTTT-TCGGGCCEEEECCHH-HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HHHHHH
T ss_pred cc--c----CCCCEEEEechhhc-cCCCCceEEEEECHH-HHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hHHHHH
Confidence 10 1 35789999999997 789999999999554 444443332 2234778999999999998776 444444
Q ss_pred -HHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccc-hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-
Q 011801 325 -TSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRH-LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE- 397 (477)
Q Consensus 325 -~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~-~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~- 397 (477)
.++.++++++.+.+.|.+. ++.+..+.+|+|+|++++. ..+ ..+++..+ .++||.++||+.|....
T Consensus 332 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l-~~~gi~v~~g~~~~~~~~ 404 (444)
T 3if2_A 332 EIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPIS------TLDLYERL-KAKGTLIVPSEYFFPGVD 404 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSC------HHHHHHHH-HHTTEECEEGGGSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCC------HHHHHHHH-HHCCeEEecchhhcCCCC
Confidence 6778888888888877653 5677778899999999984 221 22466655 56799999999986432
Q ss_pred -------CCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 398 -------PGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 398 -------~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++++||+++. +++++++++++|++++++..
T Consensus 405 ~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 405 VSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp CTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHH
Confidence 2689999997 99999999999999987643
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=338.18 Aligned_cols=341 Identities=14% Similarity=0.170 Sum_probs=263.6
Q ss_pred ccccccccccc----c--ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 38 GGVIQLGLAEN----Q--LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 38 ~~~i~l~~~~n----~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
.++|+|+.+.. . .+++.+.+.+.+... . .....|++..|.+++|+++|+++... ..++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~-----~~~~~y~~~~g~~~lr~~la~~~~~~-----~~~~ 89 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLE------T-----ETTKTYAGLSGEPEFQKAMGELILGD-----GLKS 89 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH------H-----CCCCCCCCSSCCHHHHHHHHHHHHGG-----GCCG
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcC------C-----cccCCCCCCCCcHHHHHHHHHHHhCC-----CCCc
Confidence 46799998872 2 334666666654210 0 12457888889999999999998421 2368
Q ss_pred CcEEE--eCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVM--GGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~--t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|++ |+|+++|+++++..+.. +||.|+++.|+|+++...++.. |.+++.++++..+++.+|++++++++++.
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 166 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA-- 166 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC--
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCceEEEecccccCCccCHHHHHHHHHhC--
Confidence 89999 99999999999987754 9999999999999999888877 99999999865457889999999988641
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC-CcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~-~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+++.+++. ...++..+.. ..+++++++||
T Consensus 167 -~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 241 (394)
T 2ay1_A 167 -KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS----RIPEVLIAASC 241 (394)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH----HCSSEEEEEEC
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh----cCCCEEEEEec
Confidence 12456778899999999999999999999999999999999999998665421 2233433322 23678999999
Q ss_pred CcccCCCCceEEEEEe--CCHHH----HHHHHH--hcccCCCchHHHHHHHHhcCChhh---HHHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYS--FNDTV----VNCGRK--MSSFGLVSSQTQYLLASMLSDDEF---VDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~--~~~~i----~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~---~~~~~~~~~~~l~~r~~~ 335 (477)
||.+|++|+|+||+++ +++.+ ...+.. ...+...++++|.++..+|++.++ .++++++.+++++++++.
T Consensus 242 sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 321 (394)
T 2ay1_A 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ 321 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 44432 222221 233444588999999999987621 145678888999999999
Q ss_pred HHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+.+.|++.+ +++..+.+|+|+|++++. +.+..+++++||.+.|| +|++++..+++
T Consensus 322 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~----------~Ris~~~~~~~ 380 (394)
T 2ay1_A 322 LAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD----------SRINIAGLNDN 380 (394)
T ss_dssp HHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEeecCCHh
Confidence 999998875 777778889999998762 23456667789999875 59999866899
Q ss_pred HHHHHHHHHHHH
Q 011801 412 TLQVALNRIAAF 423 (477)
Q Consensus 412 ~l~~~l~~l~~~ 423 (477)
++++++++|+++
T Consensus 381 ~i~~~~~~l~~~ 392 (394)
T 2ay1_A 381 TIPILARAIIEV 392 (394)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 999999999875
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=325.31 Aligned_cols=329 Identities=18% Similarity=0.289 Sum_probs=256.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+.++|+++ ++.+.+.+.+.-.. .+ .....|++. +..++|+++|++++ +++++|+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~----~~~~~y~~~-~~~~lr~~la~~~g--------~~~~~i~ 86 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGP-----DG----AALRIYPSA-SSQKLREVAGELYG--------FDPSWII 86 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTT-----TC----GGGGSCCCS-SCHHHHHHHHHHHT--------CCGGGEE
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhc-----cc----chhhcCCCC-chHHHHHHHHHHhC--------cCcceEE
Confidence 457999999999885 45566666552110 00 014567665 56999999999996 5788999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+.+++.+++++||.|+++.|+|.++...++.. |.+++.++++. ++.+ ++++++ .+++++
T Consensus 87 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~--~~l~~~--------~~~~~v 153 (360)
T 3hdo_A 87 MANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQ-GARVRTFGLTG--DFRI--AGFPER--------YEGKVF 153 (360)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHH-TCEEEEECBCT--TSSB--TTCCSS--------BCSSEE
T ss_pred EcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHC-CCEEEEeeCCC--CCCH--HHHHhh--------cCCCEE
Confidence 9999999999999999999999999999999999988887 99999999864 3555 444322 256799
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++++|+||||.+++.+++. ++|+++|+++|+||+|+++ .+....+. .. ..+++++++|+||.+|++|+
T Consensus 154 ~i~~p~nptG~~~~~~~l~---~l~~~~~~~li~De~~~~~--~~~~~~~~---~~----~~~~~i~~~s~sK~~g~~G~ 221 (360)
T 3hdo_A 154 FLTTPNAPLGPSFPLEYID---ELARRCAGMLVLDETYAEF--AESNALEL---VR----RHENVVVTRTLSKSYSLAGM 221 (360)
T ss_dssp EEESSCTTTCCCCCHHHHH---HHHHHBSSEEEEECTTGGG--SSCCCTHH---HH----HCSSEEEEEESTTTTSCTTS
T ss_pred EEeCCCCCCCCCcCHHHHH---HHHHHCCCEEEEECChHhh--CCcchhHH---hc----cCCCEEEEecchHhhcCCcc
Confidence 9999999999999966554 5556889999999999974 33333332 22 34788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
|+||+++ ++.+.+.+......+.++.+.|.++..+|++.+ ++++.+++++++++.+.+.|++.|+.+.++. |.|
T Consensus 222 r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~ 295 (360)
T 3hdo_A 222 RIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQA----YLSECCRRIRETREWFTTELRSIGYDVIPSQ-GNY 295 (360)
T ss_dssp CCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCS-SSE
T ss_pred ceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEEcCCC-ccE
Confidence 9999999 555666665555556689999999999998744 4677888899999999999999998877655 468
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+|++++.. + ..++.+.+. ++||.++||+. ...++++|++++ +++++++++++|+++.+.
T Consensus 296 ~~~~~~~~-~------~~~l~~~l~-~~gi~v~~~~~--~~~~~~iRis~~--~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 296 LFATPPDR-D------GKRVYDGLY-ARKVLVRHFSD--PLLAHGMRISIG--TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp EEEECTTC-C------HHHHHHHHH-HTTEECBCCCS--TTTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred EEEECCCC-C------HHHHHHHHH-HCCEEEEECCC--CCCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence 89887631 1 224666554 56999999876 334689999998 899999999999998865
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=336.75 Aligned_cols=344 Identities=14% Similarity=0.123 Sum_probs=255.9
Q ss_pred cccccccc------ccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 40 VIQLGLAE------NQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 40 ~i~l~~~~------n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
.||||++. ++..++-++++.+...+. .....|.+..|+++||+++++++... ........
T Consensus 46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-----------~~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~ 111 (420)
T 4h51_A 46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-----------NLDYEYLPISGYQPFIDEAVKIIYGN---TVELENLV 111 (420)
T ss_dssp CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEE
T ss_pred CEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-----------CCCCCCCCcCChHHHHHHHHHHhcCC---Cccccccc
Confidence 58999872 222345566654331110 11235999999999999999997532 11222233
Q ss_pred EEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccchHHHHhhhCCcE-EEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 114 IVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAAFDRDLSWRTGVQ-IVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~~~~~~~~g~~-~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.+-|.|+|+|+..++..+ .+|||.|++++|+|+.|...++.. |.+ +..++....+++.+|.+.+.+.+++.
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a-G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~--- 187 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA-GWKNICTYAYYDPKTVSLNFEGMKKDILAA--- 187 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT-TCCCEEEEECEEGGGTEECHHHHHHHHHHS---
T ss_pred eeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc-CCeEEEeeccccccccCCCHHHHHHHHhcc---
Confidence 455889998887766554 579999999999999999998887 886 44555555567889999998888653
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc--cHHHhhhhccCCCCcEEEEecC
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT--SVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~--s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+.+++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++.... .+....+ ..++++++.||
T Consensus 188 ~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~ 263 (420)
T 4h51_A 188 PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFAR----RGIEVLLAQSF 263 (420)
T ss_dssp CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCCCEEEEEC
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHh----hCceEEEEecc
Confidence 34677888899999999999999999999999999999999999999877653221 2222222 45778999999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHH------H--HhcccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCG------R--KMSSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~------~--~~~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~ 335 (477)
||.|+++|+|+||++++.+...... . ....+...+...|.+++..|.++.+. ++.++..+++++++|+.
T Consensus 264 SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~ 343 (420)
T 4h51_A 264 SKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRT 343 (420)
T ss_dssp TTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654332211 1 12344557778999999999987643 44567778999999999
Q ss_pred HHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
|.+.|++.| +.+..+++|+|.|+.+.. +.++ +|+++||.+.||+ |||+++++++
T Consensus 344 l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ 401 (420)
T 4h51_A 344 VYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCE-YCQNHNIFITVSG----------RANMAGLTHE 401 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHH-HHHHTTEECCTTC----------EEEGGGCCHH
T ss_pred HHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHH-HHHhCCEEEcCCC----------EEEeccCCHH
Confidence 999999986 344567889999987763 1233 4567899988762 9999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 011801 412 TLQVALNRIAAFVQQD 427 (477)
Q Consensus 412 ~l~~~l~~l~~~~~~~ 427 (477)
+++.+.++|.+++++.
T Consensus 402 ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 402 TALMLAQTINDAVRNV 417 (420)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999763
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=319.19 Aligned_cols=322 Identities=16% Similarity=0.267 Sum_probs=250.4
Q ss_pred CCCCCCCcccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 31 FHPTQNPGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
|.+...+.++|+|+.++|+++ ++.+.+.+.+.-.. .....|++. +..++|+++|+++++. .+
T Consensus 12 ~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~la~~~~~~-----~~ 74 (335)
T 1uu1_A 12 YPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIYYDS-PDEELIEKILSYLDTD-----FL 74 (335)
T ss_dssp CCCCCCCCCSEEESSCCCSSCCCHHHHHHHHHTCCG-----------GGGGSCCCS-SCHHHHHHHHHHHTCS-----SC
T ss_pred CCCCCCCCcceECCCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-chHHHHHHHHHHcCCC-----CC
Confidence 333333457899999999764 56667766664210 124567664 6899999999999753 25
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
++++|++|+|+++++.+++.++ ||.|+++ |+|+++...++.. |.+++.++++ ++|.+|++++ +
T Consensus 75 ~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l-----~----- 137 (335)
T 1uu1_A 75 SKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKAV-GAKFLEVPLT--KDLRIPEVNV-----G----- 137 (335)
T ss_dssp CGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHHH-TCEEEECCCC--TTSCCCCCCC-----C-----
T ss_pred CHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHHc-CCeEEEeccC--CCCCCCHHHc-----C-----
Confidence 6889999999999999999988 8999999 9999999888877 9999999875 3567887776 1
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
++++|++++|+||||.+++.+++++|+++| | ++|+||+|+++.+. ++.+ ..+ ..+++++++||||.
T Consensus 138 -~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~~~---~~~----~~~~~i~~~s~sK~ 203 (335)
T 1uu1_A 138 -EGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHGE--SYVD---FLK----KYENLAVIRTFSKA 203 (335)
T ss_dssp -TTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC--CCGG---GGG----TCSSEEEEEESTTT
T ss_pred -CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcch--hHHH---Hhh----hCCCEEEEecchhh
Confidence 788999999999999999999999998877 7 89999999975432 2222 222 34678999999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
+|++|+|+||+++ ++.+.+.++.....+.++.++|.++.++|++.+ ++++.+++++++++.+.+.|++.|+.+.+
T Consensus 204 ~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 278 (335)
T 1uu1_A 204 FSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITD 278 (335)
T ss_dssp TTCGGGCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred cCCcccCeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCCcEEcC
Confidence 9999999999999 455555555544445688999999999998743 36677788889999999999888887654
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
.+|+|+|++++. . +..++++.+.+ +||.++|+ ++++|++++ +++++++++++|+++
T Consensus 279 -~~~~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~~-------~~~iRis~~--~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 279 -SRGNFVFVFMEK-E------EKERLLEHLRT-KNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (335)
T ss_dssp -CCSSEEEEECCT-H------HHHHHHHHHHH-HTEEEEEE-------TTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred -CCCeEEEEECCC-C------CHHHHHHHHHH-CCEEEEEC-------CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 456799999874 1 12256666664 59999982 578999997 568899999998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=301.76 Aligned_cols=343 Identities=15% Similarity=0.080 Sum_probs=256.4
Q ss_pred CCccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 36 NPGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 36 ~~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
+..++|+|+.+++ .+ +++.+.+.+.+.-. +. ......|++..|.+++++++++++.+..| .++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~------~~---~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~~ 105 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALE------KY---GTGCAGSRFLNGTLDIHVELEEKLSAYVG------KEA 105 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHH------HH---CSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CSE
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHH------Hc---CCCCCCcCcccCCcHHHHHHHHHHHHHhC------CCc
Confidence 3567899999977 44 44555555544210 00 01123466667888999999998887765 368
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+++|+|+++|+.+++.++.++||.|+++.|+|+.+...++.. |.+++.+++ +|+++|++++++... .+++
T Consensus 106 v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~-g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~ 175 (398)
T 3a2b_A 106 AILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLS-FSKVIKYGH-------NNMEDLRAKLSRLPE--DSAK 175 (398)
T ss_dssp EEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHS-SSEEEEECT-------TCHHHHHHHHHTSCS--SSCE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHc-CCceEEeCC-------CCHHHHHHHHHhhcc--CCce
Confidence 999999999999999999999999999999999999888876 999999885 478999988864210 1688
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCc-EEEEecCCcccCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL-IHIIYSLSKDMGL 272 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~-viiv~SlSK~~g~ 272 (477)
+|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.|+.. ..++.+... ..++ +++++||||.+|+
T Consensus 176 ~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~----~~~~~di~~~s~sK~~~~ 247 (398)
T 3a2b_A 176 LICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK-GAGTASHFG----LNDDVDLIMGTFSKSLAS 247 (398)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG-GCCHHHHHT----CGGGCSEEEEESSSTTCS
T ss_pred EEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC-CCchHhhcC----CCcCCeEEEecccccccC
Confidence 9999999999999998 88899999999999999999987656422 133333221 1234 5899999999997
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-c--ccCCCchHHHHH-HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKM-S--SFGLVSSQTQYL-LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~-~--~~~~vs~~~q~~-~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
+| ||++++++ +.+.+... . .....+++.|.+ +..+|+.. +++++.+++++++++.+.+.|++.|+++.
T Consensus 248 ~G---G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 319 (398)
T 3a2b_A 248 LG---GFVAGDAD-VIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHGFDLG 319 (398)
T ss_dssp SC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CC---cEEEeCHH-HHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 78 99999654 44444332 1 223355566764 45666542 23567788899999999999999898877
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.+. |+|+|+.++... ...++++.++++ ||.+.||+.|... .++++||+++. .+++++++++++|++++++
T Consensus 320 ~~~-g~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 320 ATE-SPILPIFIRSNE------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp SCC-SSEEEEECCCHH------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCEEEEEcCCHH------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 665 589999997432 123577777766 9999999988642 35799999986 4999999999999999876
Q ss_pred h
Q 011801 427 D 427 (477)
Q Consensus 427 ~ 427 (477)
.
T Consensus 392 ~ 392 (398)
T 3a2b_A 392 A 392 (398)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=286.54 Aligned_cols=345 Identities=15% Similarity=0.096 Sum_probs=244.5
Q ss_pred Ccccccccccccccc---HHHHHHHHHhCCCCcccccccccccccccc--cCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 37 PGGVIQLGLAENQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAI--FQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
...+|||+.+ |+++ ++.+.+.+.+.-.. -+.. ..... |+...+..+++++++++++ . +
T Consensus 42 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~-----~~~~--~~~~~~~~g~~~~~~~l~~~la~~~~--------~-~ 104 (399)
T 3tqx_A 42 EKEVLNFCAN-NYLGLADHPALIKTAQTVVEQ-----YGFG--MASVRFICGTQTIHKELEKDISEFLG--------T-D 104 (399)
T ss_dssp TEEEEECSSC-CTTSCTTCHHHHHHHHHHHHH-----HCSC--CCSCCCCCCCBHHHHHHHHHHHHHHT--------C-S
T ss_pred CeeEEEeecc-CcccccCCHHHHHHHHHHHHH-----hCCC--CCCcCccccCchHHHHHHHHHHHHHC--------C-C
Confidence 4568999988 5544 35555544432100 0000 00111 2233347899999999986 1 3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
+.|++++| ++|+..++.+++++||.|+++.|+|+.+...++.. |.++++++. +|+++|++++++....+.+
T Consensus 105 ~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 105 DTILYSSC-FDANGGLFETLLGPEDAIISDELNHASIIDGIRLC-KAQRYRYKN-------NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSC-CSEEEEECT-------TCTTHHHHHHHHHHTTTCS
T ss_pred cEEEECch-HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCceeEeCC-------CCHHHHHHHHHhhhccCCC
Confidence 45666655 77999999999999999999999999999888876 999998885 3678899999876544457
Q ss_pred eeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 192 IKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 192 ~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
+++|++++|+||||.+++ +++|+++|+++|+++|+||+|+...+.. ...+..+... ...+.+++++|+||.+|
T Consensus 176 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~---~~~~~di~~~s~sK~~~ 248 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE-NGRGTPEYCG---VADRVDILTGTLGKALG 248 (399)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST-TSCCHHHHHT---CTTCCSEEEEESSSSSC
T ss_pred ceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC-CCCchHHhhC---CCCCCcEEEecchHhcc
Confidence 999999999999999999 8899999999999999999996332332 2233333321 11255688999999998
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
|++.||++++++.+.........+ +..+...+.++...++.. ..+.++.+++++++++++.+.|++.|+++.
T Consensus 249 --g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 323 (399)
T 3tqx_A 249 --GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGMEKLGFQLV 323 (399)
T ss_dssp --SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred --cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 344599999665443333222222 235556666666665432 244677888999999999999999998887
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++.+ .|+|+.++... ...++++.+++ +||.+.|+..+. ..+++++|++++. .+++++++++++|++++++
T Consensus 324 ~~~~-~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 324 PGNH-PIIPVMLGDAQ------LATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp CCSS-SEEEEEEECHH------HHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CEEEEEeCCHH------HHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 5554 67888887532 22357777776 599999875443 3345799999973 4999999999999999976
Q ss_pred h
Q 011801 427 D 427 (477)
Q Consensus 427 ~ 427 (477)
.
T Consensus 396 ~ 396 (399)
T 3tqx_A 396 L 396 (399)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=286.60 Aligned_cols=341 Identities=16% Similarity=0.103 Sum_probs=244.4
Q ss_pred CCcccccccccccccc---HHHHHHHHHhCCCCcccccccccccccccccC--CCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 36 NPGGVIQLGLAENQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAIFQ--DYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
+...+|||+.+ |+++ ++.+.+.+.+.-.. -+. ......|+ ...+..++|+++|++++ .+
T Consensus 43 ~g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~-----~~~--~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~ 106 (401)
T 1fc4_A 43 DGSHVINFCAN-NYLGLANHPDLIAAAKAGMDS-----HGF--GMASVRFICGTQDSHKELEQKLAAFLG--------ME 106 (401)
T ss_dssp TSCEEEECCCS-CTTSCTTCHHHHHHHHHHHHH-----HCS--CCCSCHHHHCCBHHHHHHHHHHHHHHT--------CS
T ss_pred CCccEEEeecc-CcccccCCHHHHHHHHHHHHH-----hCC--CCCCCCcccCCcHHHHHHHHHHHHHhC--------CC
Confidence 45678999988 6664 45555555442100 000 00011232 23467899999999996 33
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
+.|++++| ++++..++.++.++||.|+++.|+|+.+...++.. |++++.++. +|+++|++++++..+.+.
T Consensus 107 -~~i~~~sG-s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~ 176 (401)
T 1fc4_A 107 -DAILYSSC-FDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMQELEARLKEAREAGA 176 (401)
T ss_dssp -EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT-------TCHHHHHHHHHHHHHTTC
T ss_pred -cEEEeCCh-HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHc-CCceEEECC-------CCHHHHHHHHHHhhccCC
Confidence 56666655 67999999999999999999999998888877766 999988873 378999999876543334
Q ss_pred CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-cccc-CCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 191 NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVF-SSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~-~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ ++.+ .+..+.+...+ .++.+++++||||
T Consensus 177 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~------~~~~di~~~s~sK 247 (401)
T 1fc4_A 177 RHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV------MGRVDIITGTLGK 247 (401)
T ss_dssp SSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC------TTCCSEEEEESSS
T ss_pred CceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC------CcCCcEEEecchh
Confidence 6899999999999999999 8889999999999999999996 6542 23332221111 2345688999999
Q ss_pred cc-CCCCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 269 DM-GLPGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 269 ~~-g~~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+ |.+| ||+++++ .+.+.+.... .+ +.++.+.|.++...|+..+ . .++.+++++++++++.+.|++.
T Consensus 248 ~~~~~~g---G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~~~~~l~~~L~~~ 319 (401)
T 1fc4_A 248 ALGGASG---GYTAARK-EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE---A-GSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp TTCSSSC---EEEEECH-HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH---T-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCC---EEEEcCH-HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHHHHHHHHc
Confidence 99 6554 9999954 4444444322 12 2467788888877775422 1 3556778888999999999998
Q ss_pred CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHH
Q 011801 344 GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIA 421 (477)
Q Consensus 344 gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~ 421 (477)
|+++.+ ..|+|+|++++... ...++++.+.++ ||.+.||..|+.. .++++||+++. .+++++++++++|+
T Consensus 320 g~~~~~-~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 320 GFTLAG-ADHAIIPVMLGDAV------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp TCCBCC-SSSSEEEEEEECHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcccC-CCCCEEEEEcCChH------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 888774 56688999987421 123566666655 9999999877642 35689999975 48999999999999
Q ss_pred HHHhhh
Q 011801 422 AFVQQD 427 (477)
Q Consensus 422 ~~~~~~ 427 (477)
+++++.
T Consensus 392 ~~~~~~ 397 (401)
T 1fc4_A 392 RIGKQL 397 (401)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=283.24 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=233.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++++++++.+..| .+++ +|++|+|+++|+.+++.+++++||.|++++|+|++ +...++.. |.+++.++
T Consensus 65 ~~~~~~~~~~~la~~~g----~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 139 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQ----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHc-CCceEEEe
Confidence 46778888888777666 4677 99999999999999999999999999999999998 87777766 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+ ++..+ .
T Consensus 140 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~~~-~ 205 (393)
T 1vjo_A 140 KPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGVP-I 205 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTSC-C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---ccCcC-C
Confidence 874 5679999999998753 6789999999999999998 7889999999999999999998 33222 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh----------------------cccCCCch
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM----------------------SSFGLVSS 302 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~----------------------~~~~~vs~ 302 (477)
.+ . ..+.++++.|+||.++.+| |+||++++++.+ +.++.. ..+++.+.
T Consensus 206 ~~----~----~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (393)
T 1vjo_A 206 FL----D----AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAI-EKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPI 275 (393)
T ss_dssp CT----T----TTTCSEEECCSSSTTCSCS-SCEEEEECHHHH-HHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCH
T ss_pred cc----c----ccCccEEEEcCcccccCCC-ceEEEEECHHHH-HHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCH
Confidence 21 1 2355688999999998777 999999966544 333211 11225677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHH
Q 011801 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 303 ~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
+.|.++..+|+... +.++++.+++++++++++.+.|++.|+++..+.+ +.++|+.++...+ ..++++.+
T Consensus 276 ~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l 347 (393)
T 1vjo_A 276 NLYYALREALRLIA--QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------GKAVARRL 347 (393)
T ss_dssp HHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCC------HHHHHHHH
Confidence 88888888876421 3346778888999999999999988888776654 3577888763221 22577777
Q ss_pred HHhcCeEEeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHh
Q 011801 380 VNDVKLNVSPGSSFQCTEPGWFRVCF-AN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~~~~~~Rl~~-~~-~~~e~l~~~l~~l~~~~~ 425 (477)
.+++||.+.||+.|. .++++||++ +. .+++++++++++|+++++
T Consensus 348 ~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 348 LNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp HHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 766699999998664 468999995 33 367789999999998863
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=276.34 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEecc
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~ 166 (477)
.++++++++++.+..| +. ++++|++|+|+++|+.+++.+++++||.|++++|+|++ +...++.. |++++.++++
T Consensus 52 ~~~~~~~~~~la~~~g--~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~ 127 (386)
T 2dr1_A 52 RKVHMDTVERLREFLE--VE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESN-GRKAVVLEYE 127 (386)
T ss_dssp HHHHHHHHHHHHHHHT--CS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhC--CC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHh-CCceEEEecC
Confidence 6778888887777666 22 36789999999999999999999999999999999998 77777766 9999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
. ++.+|+++|++++++ +.++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+. .++
T Consensus 128 ~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~----~~~ 194 (386)
T 2dr1_A 128 P--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD----IKF 194 (386)
T ss_dssp T--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC----CCT
T ss_pred C--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc----ccc
Confidence 4 577999999999864 237899999999999999988 888999999999999999999854321 121
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH---------------H----HhcccCCCchHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG---------------R----KMSSFGLVSSQTQYL 307 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~---------------~----~~~~~~~vs~~~q~~ 307 (477)
. ..+.+++++|+||.++.++ ++||++++++.+.... . +....++.+...|.+
T Consensus 195 ----~----~~~~di~~~s~sK~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 265 (386)
T 2dr1_A 195 ----D----KWGLDVVFSSSQKAFGVPP-GLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFG 265 (386)
T ss_dssp ----T----TTTCSEEEEETTSTTCCCS-SCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHH
T ss_pred ----c----ccCCcEEEEeccccccCCC-ceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHH
Confidence 1 2255788999999998652 4999999765433220 1 112234567788888
Q ss_pred HHHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+..+|+.. .+ .+++.+++++++++++.+.|++.|+++..+. .+.++|++++...+ ..++++.+.++
T Consensus 266 ~~~~l~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~ 336 (386)
T 2dr1_A 266 INVALRII---EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIK------GDEVYEAMRKR 336 (386)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCC------HHHHHHHHHHT
T ss_pred HHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCC------HHHHHHHHHHC
Confidence 87777542 22 2567788899999999999998888877664 36789999874221 22567777766
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
||.+.||..+. .++++||+++. .+++++++++++|++++++.
T Consensus 337 -gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 337 -GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp -TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999998553 46799999986 49999999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=279.95 Aligned_cols=301 Identities=17% Similarity=0.179 Sum_probs=226.2
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHH---hhhC
Q 011801 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDL---SWRT 156 (477)
Q Consensus 84 ~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~---~~~~ 156 (477)
...+..++++++|++++ +++++|++|+|+++|+.+++.++. ++||.|+++.|+|+++...+ +..
T Consensus 42 ~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~- 112 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK- 112 (384)
T ss_dssp HHHHHHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHcC--------CCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc-
Confidence 34567899999999996 467899999999999999999987 79999999999999886655 555
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC--eEEEeccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN--IHLVCDEIYA 234 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~--~~lI~De~y~ 234 (477)
|.+++.++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++| ++||+||+|+
T Consensus 113 g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 113 GFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp TCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred CCEEEEEccCC--CCccCHHHHHHHhCC------CCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh
Confidence 99999998863 578999999988853 7899999999999999999 788888999999 9999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-HHHHHHH-----hcccCCCchHHHHHH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-VVNCGRK-----MSSFGLVSSQTQYLL 308 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-i~~~~~~-----~~~~~~vs~~~q~~~ 308 (477)
|.... .++. ..+.++++.|+||.+|++| +||++++++. +...... ....+..+.+.|.++
T Consensus 182 ---~~~~~-~~~~--------~~~~di~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 247 (384)
T 1eg5_A 182 ---IGKIP-FSLE--------KLEVDYASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGA 247 (384)
T ss_dssp ---TTTSC-CCCT--------TTCCSEEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHH
T ss_pred ---cCCcc-cCch--------hcCCCEEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHH
Confidence 43322 1211 1245688999999999888 7999997653 1211111 012345778888888
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
..+|+.. .+++++.+++++++++.+.+.|++.|+++..+. .+.++++.++.. + ..++.+.+ .++||
T Consensus 248 ~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l-~~~gi 316 (384)
T 1eg5_A 248 ARAMEIA---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI------R-GSTLQNLL-SGYGI 316 (384)
T ss_dssp HHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC------C-HHHHHHHH-HHTTE
T ss_pred HHHHHHH---HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC------C-HHHHHHHH-hhCCe
Confidence 8887652 335677888899999999999998888876543 234667776631 1 12466655 56799
Q ss_pred EEeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 386 NVSPGSSFQCT-----------------EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 386 ~v~pg~~f~~~-----------------~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.+.||+.|... .++++||+++. .+++++++++++|++++++.+.
T Consensus 317 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred EEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999877532 14799999985 4899999999999999987543
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=280.85 Aligned_cols=342 Identities=14% Similarity=0.154 Sum_probs=242.4
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCC--CCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD--YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
.++|+|+.+++..+++.+.+.+.+.-... .+ +.......|++ ..+..++|+++|++++. . ++++|+
T Consensus 27 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~----~~-~~~~~~~~y~~~~~~~~~~l~~~la~~~~~------~-~~~~v~ 94 (420)
T 1t3i_A 27 HPLVYLDNAATSQKPRAVLEKLMHYYEND----NA-NVHRGAHQLSVRATDAYEAVRNKVAKFINA------R-SPREIV 94 (420)
T ss_dssp EECEECBTTTCCCCCHHHHHHHHHHHHHT----CC-CC--CCSHHHHHHHHHHHHHHHHHHHHTTC------S-CGGGEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhc----cC-CCCcccchHHHHHHHHHHHHHHHHHHHcCC------C-CCCeEE
Confidence 45899999887755566666554421000 00 00001223543 35678999999999872 1 578999
Q ss_pred EeCChHHHHHHHHHHh----cCCCCeEEEcCCCccc----hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCL----ANPGDAFLVPSPYYAA----FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
+|+|+++|+.+++.++ .++||.|+++.|+|++ +...++.. |.+++.++++ .++.+|+++|++++++
T Consensus 95 ~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~l~~--- 168 (420)
T 1t3i_A 95 YTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAVLKFVQLD--EQESFDLEHFKTLLSE--- 168 (420)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCEEEEECBC--TTSSBCHHHHHHHCCT---
T ss_pred EcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhc-CcEEEEeccC--CCCCcCHHHHHHhhCC---
Confidence 9999999999999999 8999999999999998 44555566 9999999986 4678999999998853
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ... .++... +.++++.|+|
T Consensus 169 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~~~-~~~~~~--------~~di~~~s~s 230 (420)
T 1t3i_A 169 ---KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAP---HYP-LDVQLI--------DCDWLVASGH 230 (420)
T ss_dssp ---TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHHHH--------TCSEEEEEGG
T ss_pred ---CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccC---Ccc-Cchhhc--------CCCEEEEehh
Confidence 7899999999999999999 888999999999999999999842 111 232222 3457889999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHhcc---------------------c-CCCchHHHHHHHH-hcCChhhHHHHHHH
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------------------F-GLVSSQTQYLLAS-MLSDDEFVDNFLVE 324 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------------------~-~~vs~~~q~~~~~-~L~~~~~~~~~~~~ 324 (477)
|.+|.+| +||++++++ +.+.++.... + ...+.+.|.++.. .+.... +..+++
T Consensus 231 K~~~~~g--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~ 305 (420)
T 1t3i_A 231 KMCAPTG--IGFLYGKEE-ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--DLGMEN 305 (420)
T ss_dssp GTTSCTT--CEEEEECHH-HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHH
T ss_pred hhcCCCc--eEEEEEchH-HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH--HhHHHH
Confidence 9998777 999999654 4444333221 1 1244555555332 332211 123566
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeEecCC-----ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC---
Q 011801 325 TSKRLAKRHHNFTKGLEQV-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC--- 395 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~--- 395 (477)
..++++++++.+.+.|++. |+++..+. .|.++++.++. . + ..++.+ .+.+.||.+.||..|..
T Consensus 306 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~-~l~~~gi~v~~~~~~~~~~~ 377 (420)
T 1t3i_A 306 IHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG-L-----H-ASDVAT-MVDQDGIAIRSGHHCTQPLH 377 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT-B-----C-HHHHHH-HHHTTTEECBCSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC-C-----C-HHHHHH-HHHHCCeEEeeccccchHHH
Confidence 7788888999999999988 88887664 23455556763 1 1 124554 45667999999975532
Q ss_pred ---CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 396 ---TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 396 ---~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..++++||+++. .++++++.++++|+++++..+
T Consensus 378 ~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 378 RLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS 414 (420)
T ss_dssp HHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 126799999986 389999999999999987643
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=277.41 Aligned_cols=336 Identities=10% Similarity=0.061 Sum_probs=238.1
Q ss_pred Cccccccccccc-cc-cHHHHHHHHHhCCCCccccccccccccccccc--CCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIF--QDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...+|||+.++| .+ +++.+.+.+.+.-.. .+.. .....| ....+..++|++++++++ + ++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~--~~~~~~~~g~~~~~~~l~~~la~~~g--------~-~~ 101 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-----FGIG--SGGSGHVSGYSVVHQALEEELAEWLG--------Y-SR 101 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHH-----HCSC--CCSBTTTTCCCHHHHHHHHHHHHHHT--------C-SE
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHH-----hCCC--CCCcCcccCChHHHHHHHHHHHHHhC--------C-Cc
Confidence 456899999876 32 335555555442100 0000 011233 334578899999999996 2 24
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.|++++| ++++..++.++.++||.|+++.|+|+.+...++.. |.+++.++. +|+++|++++++. ..++
T Consensus 102 ~i~~~sG-t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~---~~~~ 169 (384)
T 1bs0_A 102 ALLFISG-FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH-------NDVTHLARLLASP---CPGQ 169 (384)
T ss_dssp EEEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT-------TCHHHHHHHHHSC---CSSC
T ss_pred EEEeCCc-HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHc-CCCEEEeCC-------CCHHHHHHHHHhc---CCCC
Confidence 5555555 89999999999999999999999999998888876 999998873 3788998888641 1136
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+... ..+...... .+..++++|+||.+|.
T Consensus 170 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-----~~~di~~~s~sK~~~~ 240 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQ-GRGSCWLQK-----VKPELLVVTFGKGFGV 240 (384)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGG-GCCHHHHTT-----CCCSEEEEESSSTTSS
T ss_pred eEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCC-CCchHHhcC-----CCCcEEEeeccchhhc
Confidence 88899999999999999 78899999999999999999986544311 112222221 1233889999999997
Q ss_pred CCceEEEEEeCCHHHHHHHHHhc-cc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe
Q 011801 273 PGFRVGIVYSFNDTVVNCGRKMS-SF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL 348 (477)
Q Consensus 273 ~G~RvG~i~~~~~~i~~~~~~~~-~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~ 348 (477)
+| ||++++++ +.+.+.... .+ ...+.+.+.++.+.|+..+ +.+.++.+++++++++++.+.|++.|+++.
T Consensus 241 ~G---G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 314 (384)
T 1bs0_A 241 SG---AAVLCSST-VADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAALITRFRAGVQDLPFTLA 314 (384)
T ss_dssp CC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHTTSSCEEC
T ss_pred cC---cEEEeCHH-HHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 77 99999644 444443321 22 1367777777776665322 114567788899999999999999998876
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-CCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-TEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+ ..|.|+|++++... ...++.+.+.++ ||.+.||..|+. .+.+++||+++.. +++++++++++|+++
T Consensus 315 ~-~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 315 D-SCSAIQPLIVGDNS------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp S-CCSSBCCEEEESHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred C-CCCCEEEEEeCCHH------HHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 5 45578888886422 123566776655 999999987753 2357999999854 899999999999864
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=282.26 Aligned_cols=297 Identities=17% Similarity=0.205 Sum_probs=219.6
Q ss_pred ccCC-CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHH----Hhh
Q 011801 81 IFQD-YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRD----LSW 154 (477)
Q Consensus 81 ~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~----~~~ 154 (477)
.|++ ..+..++|++++++++ .++++|++|+|+++|+.+++.++ .++||.|+++.|+|+++... ++.
T Consensus 53 ~y~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 53 ANQHIQQLIAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC--------CCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH
Confidence 3544 3568899999999986 46789999999999999999999 89999999999999987643 344
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH----hcCeEEEec
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN----DKNIHLVCD 230 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~----~~~~~lI~D 230 (477)
. |.+++.++++..+++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|+ ++|+++|+|
T Consensus 125 ~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~D 194 (390)
T 1elu_A 125 F-GITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVD 194 (390)
T ss_dssp H-CCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEE
T ss_pred h-CcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEE
Confidence 5 9999999986435678999999988753 7899999999999999999 888899999 999999999
Q ss_pred ccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----------------
Q 011801 231 EIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----------------- 293 (477)
Q Consensus 231 e~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----------------- 293 (477)
|+|+. ...+ ..+ . ..+.+++++|+||.++ +|.++||++++++.+ +.+..
T Consensus 195 ea~~~---g~~~-~~~----~----~~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 260 (390)
T 1elu_A 195 GAQSA---GSLP-LDF----S----RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCL-GEINPTYVGWRSITYGAKGEPT 260 (390)
T ss_dssp CTTTB---TTBC-CCT----T----TSCCSEEEEESSSTTC-CCTTCEEEEECTTTG-GGCCCCSCCTTTEEECTTSCEE
T ss_pred ccccc---CCcC-CCh----h----hcCCCEEEcccccccc-CCCceEEEEECHHhH-hhcCCccccCCcccccccCccc
Confidence 99973 2211 111 1 2245688999999443 567799999976543 22221
Q ss_pred -------hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEEEEeeccc
Q 011801 294 -------MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLFFWMDLRH 362 (477)
Q Consensus 294 -------~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~~~~~l~~ 362 (477)
....++.+...+.++...+....- ..++++..++++++++++.+.|+++ |+++.. +.++++ +++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~-~~~~~~ 338 (390)
T 1elu_A 261 GWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLV-SFTVDS 338 (390)
T ss_dssp EECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEE-EEEECS
T ss_pred ccccchHhhCCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEE-EEEcCC
Confidence 011234555666665555542110 1236677888899999999999987 888773 356554 457763
Q ss_pred hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011801 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 363 ~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~ 423 (477)
..+ ..++.+.+. ++||.+.||. .++++||+++. .+++++++++++|+++
T Consensus 339 ~~~------~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 339 PLG------HRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp SSC------HHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCC------HHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 211 224666664 5699999986 36799999954 4999999999998753
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=273.06 Aligned_cols=298 Identities=14% Similarity=0.129 Sum_probs=227.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
..++|+++|++++ .+++ +|++|+|+++|+.+++.+++++||.|++++|+|+++. ..++.. |++++.++
T Consensus 53 ~~~l~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 123 (396)
T 2ch1_A 53 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 123 (396)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHc-CCceEEec
Confidence 6899999999997 4566 8999999999999999999999999999999999884 355655 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|++||+||+|+ +...+ .
T Consensus 124 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~---~g~~~-~ 189 (396)
T 2ch1_A 124 GPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS---LCGVP-F 189 (396)
T ss_dssp CCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC-C
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc---ccCCc-c
Confidence 864 5789999999998753 6889999999999999999 7888999999999999999998 33222 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-------------------------cccCC
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-------------------------SSFGL 299 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-------------------------~~~~~ 299 (477)
.+. ..+..+++.|++|.++ ++.++|+++++++. .+.+... ...++
T Consensus 190 ~~~--------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (396)
T 2ch1_A 190 YMD--------KWEIDAVYTGAQKVLG-APPGITPISISPKA-LDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHT 259 (396)
T ss_dssp CTT--------TTTCCEEECCCC-CCC-CCSSCEEEEECHHH-HHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCC
T ss_pred chh--------hcCcCEEEEcCCcccc-CCCCeEEEEECHHH-HHhhhhccCcccceEechHHHHHhhhhhcccCCCCCC
Confidence 211 1223466789999875 44557999996644 3333211 11234
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce----EEEEeeccchhhccCchHHHHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG----LFFWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g----~~~~~~l~~~~~~~~~~~e~~l 375 (477)
.+...|.++..+|... .+.++++.+++++++++++.+.|++.|+++..+.++ .++|++++...+ ..++
T Consensus 260 ~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 331 (396)
T 2ch1_A 260 VASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------WWKV 331 (396)
T ss_dssp CCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HHHH
T ss_pred CcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCC------HHHH
Confidence 5667787777777542 134467778889999999999999889888776542 478888863221 2257
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-c-cCCHHHHHHHHHHHHHHHhhhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-A-NMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~-~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+.+++++||.+++|..+ ..++++||++ + ..+++++++++++|++++++.+
T Consensus 332 ~~~L~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 332 SQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp HHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEecCccc--cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 777777679999998754 3468999999 4 3489999999999999997643
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.53 Aligned_cols=336 Identities=15% Similarity=0.129 Sum_probs=239.3
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
++|+|+.+.+..+++.+.+.+.+. +..|.+..|..++++++++++.+.+| .++++|++|+
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~----------------~~~~~~~~g~~~~~~~~~~~l~~~~g----~~~~~v~~~~ 73 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARD----------------NMTQHAGYGQDSHCAKAARLIGELLE----RPDADVHFIS 73 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHH----------------TTCCCCSTTCSHHHHHHHHHHHHHHT----CTTSEEEEES
T ss_pred eeEEecCCCcCCCCHHHHHHHHHH----------------HhhccccccccHHHHHHHHHHHHHhC----CCCccEEEeC
Confidence 479998887776667677766552 12466666778899999999887766 5688999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHH--HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH-HHhCCCeeEE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDR--DLSWRTGVQIVPVHCDISNNFKITREALEAAYERA-QEASINIKGL 195 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~--~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~-~~~~~~~k~v 195 (477)
|+++|++.++.++.++||.|++++|+|+++.. .++.. |.+++.++.+ ++.+|+++|++++++. ..++.++++|
T Consensus 74 g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 74 GGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT-GHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp CHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT-TCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred CchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcC-CCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 99999999999999999999999999998876 35655 9999999874 5789999999999752 0122348999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc-ccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF-TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~-~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++++| ||||.+++.+++++|+++|+++|+++|+||+|.++.+...+. .....+ . ....+++.|++|..+ .
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~-----~~~d~~~~s~~K~g~--~ 220 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI-A-----RLTDMFYIGATKAGG--M 220 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH-H-----HHCSEEEEECTTTTC--S
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhh-h-----hcCCEEEEecccCCC--C
Confidence 99999 799999999999999999999999999999995432222111 111110 0 012256789999744 3
Q ss_pred ceEEEEEeCCHHHHHHHHHh--cccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC
Q 011801 275 FRVGIVYSFNDTVVNCGRKM--SSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN 351 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~--~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~ 351 (477)
..+|+++++++.+....... .... ..+......+..++.+.. +++.+++++++++++.+.|+..|+++..+.
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 295 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEACGIRLAWPS 295 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHTTCCBSSCC
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccCCeEEccCC
Confidence 56899998655432221111 1111 112222223345666533 355677788888999999955688887777
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++|+|++++. ++++.+++++||.+.+.. ...++++|++++. .+++++++++++|++++++
T Consensus 296 ~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 296 ASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp SSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ccceEEEEcCH-----------HHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 88999998762 466666665599983210 1246799999865 4899999999999988754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=274.89 Aligned_cols=341 Identities=15% Similarity=0.135 Sum_probs=239.0
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
.++|.|+.+.+..+++.+.+.+.+.-....... ........|.+..+..++|+++|++++. . ++++|++|
T Consensus 22 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~la~~~~~------~-~~~~v~~~ 91 (406)
T 1kmj_A 22 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAV---HRGIHTLSAQATEKMENVRKRASLFINA------R-SAEELVFV 91 (406)
T ss_dssp EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCC---SSCSSHHHHHHHHHHHHHHHHHHHHTTC------S-CGGGEEEE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHhhcCCC---CCCcchHHHHHHHHHHHHHHHHHHHcCC------C-CCCeEEEe
Confidence 357888887776555555555544210000000 0000001133445678999999999862 1 57899999
Q ss_pred CChHHHHHHHHHHh----cCCCCeEEEcCCCccchH----HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 118 GGATGANELIMFCL----ANPGDAFLVPSPYYAAFD----RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 118 ~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~----~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+|+++|+.+++.++ .++||.|+++.|+|++.. ..++.. |.+++.++++. ++.+|+++|++++++
T Consensus 92 ~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----- 163 (406)
T 1kmj_A 92 RGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAELRVIPLNP--DGTLQLETLPTLFDE----- 163 (406)
T ss_dssp SSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCEEEEECBCT--TSCBCGGGHHHHCCT-----
T ss_pred CChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhC-CCEEEEEecCC--CCCcCHHHHHHHhcc-----
Confidence 99999999999999 899999999999987643 334555 99999999864 577899999998853
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ..+ .++... +.+++++|+||.
T Consensus 164 -~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g---~~~-~~~~~~--------~~d~~~~s~~K~ 227 (406)
T 1kmj_A 164 -KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVM---HHP-VDVQAL--------DCDFYVFSGHKL 227 (406)
T ss_dssp -TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHHHH--------TCSEEEEEGGGT
T ss_pred -CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcC---CCC-Cccccc--------CCCEEEEEchhc
Confidence 7899999999999999999 888999999999999999999842 111 222221 456888999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHhcc----------------------c-CCCchHHHHHHH-HhcCChhhHHHHHHHH
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKMSS----------------------F-GLVSSQTQYLLA-SMLSDDEFVDNFLVET 325 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~~~----------------------~-~~vs~~~q~~~~-~~L~~~~~~~~~~~~~ 325 (477)
+|.+| +||+++++ .+.+.++.... + ...+.+.|.++. ..++... +..+++.
T Consensus 228 ~g~~G--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~ 302 (406)
T 1kmj_A 228 YGPTG--IGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS--ALGLNNI 302 (406)
T ss_dssp TSCTT--CEEEEECH-HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHH
T ss_pred cCCCC--cEEEEEeH-HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH--HcCHHHH
Confidence 99888 89999964 44444332211 1 113445555433 3443211 2245667
Q ss_pred HHHHHHHHHHHHHHHhhC-CCeEecC--CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC------C
Q 011801 326 SKRLAKRHHNFTKGLEQV-GINCLKS--NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC------T 396 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~------~ 396 (477)
.++++++++++.+.|++. |+++..+ .++++.| .++. . + ..++.+. +.+.||.++||..|.. .
T Consensus 303 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~-~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGK-H-----H-AYDVGSF-LDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETT-C-----C-HHHHHHH-HHHTTEECEEECTTCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECC-C-----C-HHHHHHH-HhhCCcEEEeccccchHHHHhcC
Confidence 788888999999999988 8888877 6665554 5652 1 1 1245544 4566999999986532 2
Q ss_pred CCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.++++||+++.. +++++++++++|+++++.
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 268999999875 899999999999998864
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=270.71 Aligned_cols=302 Identities=12% Similarity=0.096 Sum_probs=223.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC-------------CCeEEEcCCCccchHHHHh
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP-------------GDAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~-------------Gd~vlv~~P~y~~~~~~~~ 153 (477)
+..++++++++++.+..| .++++|++|+|+++|+.+++.++..+ ||.|+++.|+|+.+...++
T Consensus 66 ~~~~~~~~l~~~la~~~~----~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 66 GTKLLEEKAVALLGSLLN----NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH
Confidence 456666666666666554 56889999999999999999998766 9999999999999999888
Q ss_pred hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 154 WRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 154 ~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
.. |++++.++++. ++.+|+++|++++++. ++++|++++|+||||.+.+ +++|.++|+++|++||+||+|
T Consensus 142 ~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~ 210 (397)
T 3f9t_A 142 MM-DLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAF 210 (397)
T ss_dssp HH-TCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTT
T ss_pred Hc-CceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccc
Confidence 87 99999999874 5789999999998752 6889999999999999988 888999999999999999999
Q ss_pred cccccCCCCc-ccHHHhhhhccC-CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC------------
Q 011801 234 AATVFSSPKF-TSVAEVIQEMDC-NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL------------ 299 (477)
Q Consensus 234 ~~~~~~~~~~-~s~~~~~~~~~~-~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~------------ 299 (477)
+++.+..... .+...+....+. . +..+++.|++|.++ +|.|+|++++.++.+.+.++....+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 3f9t_A 211 GGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRV 288 (397)
T ss_dssp GGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCC
T ss_pred cchhhhhcccccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccc
Confidence 8654321110 000000000000 2 44577899999875 788999999987765544332222211
Q ss_pred -CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHH
Q 011801 300 -VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 300 -vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
.+...+.++...+.. ..+++..++++++++++.+.|++.|+++..+..+.++|++++. ..++.+.
T Consensus 289 ~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~ 354 (397)
T 3f9t_A 289 GFGGACTYAVLRYLGR-----EGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEVCKK 354 (397)
T ss_dssp SHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHHHHH
T ss_pred cchHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHHHHH
Confidence 134556665555533 2345667777888999999999988876555556678888764 1246666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHh
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~ 425 (477)
+.++ ||.+.+|.. ++++||+++. .+++++++++++|+++++
T Consensus 355 l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 355 LRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 6654 999999853 6899999985 489999999999998864
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=273.57 Aligned_cols=344 Identities=11% Similarity=0.032 Sum_probs=238.7
Q ss_pred ccccccccccc-ccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 38 GGVIQLGLAEN-QLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..+|++..+.+ .++ .+.+.+.+.+.-.. .+.........|+...+..++|+++|++++ . +++|+
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~-~~~i~ 111 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEA-----VGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--------K-EAALV 111 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHH-----HCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--------C-SEEEE
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHH-----cCCCCCCcCcccCChHHHHHHHHHHHHHhC--------C-CcEEE
Confidence 45688887766 332 23455544432100 000000011235555678999999999986 1 57888
Q ss_pred EeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 116 MGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
+|+|++ ++..++.++. .+||.|+++.|+|+.+...++.. |++++.++.+ |+++|++++++.. ..+++
T Consensus 112 ~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~-------d~~~le~~l~~~~--~~~~~ 180 (401)
T 2bwn_A 112 FSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRHN-------DVAHLRELIAADD--PAAPK 180 (401)
T ss_dssp ESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECTT-------CHHHHHHHHHHSC--TTSCE
T ss_pred ECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc-CCeEEEEcCC-------CHHHHHHHHHhhc--cCCce
Confidence 888877 7777776653 58999999999999998888766 9999998863 6888988886421 12789
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+|++++|+||||.+++ +++|+++|+++|+++|+||+|+...|+... .+...... ...+.+++++||||.+|++
T Consensus 181 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~~~~~---~~~~~~i~~~s~sK~~~~~ 253 (401)
T 2bwn_A 181 LIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVAERDG---LMHRIDIFNGTLAKAYGVF 253 (401)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHHHHHT---CGGGCSEEEEESSSTTCSC
T ss_pred EEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCC-ceeeeccC---ccccCcEEEeechhhccCC
Confidence 9999999999999999 888999999999999999999954454322 22222111 0113468899999999988
Q ss_pred CceEEEEEeCCHHHHHHHHHhc---cc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMS---SF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK 349 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~---~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~ 349 (477)
| ||+++++ .+.+.++... .+ ...+++.+.++...++..+ +..+++.+++++++++++.+.|++.|+++..
T Consensus 254 G---G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 327 (401)
T 2bwn_A 254 G---GYIAASA-RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKALGMPIID 327 (401)
T ss_dssp C---EEEEECH-HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred C---CEEecCH-HHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 8 9999954 4444443221 11 1234566666666554221 1123566778888999999999888888877
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.++ ++|++++... ...++++.+++++||.+.|+..|+.. +.+++|++++.. +++++++++++|++++++
T Consensus 328 ~~~~-~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 328 HGSH-IVPVVIGDPV------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp CSSS-CEEEECCCHH------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred CCCC-eEEEEeCChH------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 7665 8899987421 12356777776779999999877643 346999999853 899999999999998754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=268.95 Aligned_cols=298 Identities=13% Similarity=0.053 Sum_probs=221.5
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
+..++|+++|++++ .++++|++|+|+++|+.+++.++.++||.|+++.|+|+++. ..++.. |.+++.++
T Consensus 43 ~~~~l~~~la~~~g--------~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 113 (392)
T 2z9v_A 43 LYEKVVDKAQKAMR--------LSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRY-SPHLLEIE 113 (392)
T ss_dssp HHHHHHHHHHHHTT--------CSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-CSCEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHc-CCceEEee
Confidence 46789999999986 45789999999999999999999999999999999998752 334445 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++ +.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ +...+ .
T Consensus 114 ~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~---~g~~~-~ 180 (392)
T 2z9v_A 114 VPY--NEAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSS---FGGMK-T 180 (392)
T ss_dssp CCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTT---BTTBS-C
T ss_pred CCC--CCCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccc---cCCcc-c
Confidence 864 347899999999864 237889999999999999999 7889999999999999999997 22211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHh----------------------cccCCCc
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKM----------------------SSFGLVS 301 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~----------------------~~~~~vs 301 (477)
++.. .+..+++.|+||.+ |.+| +||++++++.+ +.++.. ...++.+
T Consensus 181 ~~~~--------~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (392)
T 2z9v_A 181 HPED--------CKADIYVTGPNKCLGAPPG--LTMMGVSERAW-AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPS 249 (392)
T ss_dssp CGGG--------GTCSEEEECSSSTTCCCSC--CEEEEECHHHH-HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCC
T ss_pred cccc--------ccceEEEecCcccccCCCc--eeEEEECHHHH-HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCC
Confidence 2211 13457889999965 4455 59999965543 333321 1123344
Q ss_pred hHHHHHHHHhcCChhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEec-CC---ceEEEEeeccchhhccCchHHHHHH
Q 011801 302 SQTQYLLASMLSDDEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLK-SN---AGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~-~~---~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
...+.++...+... ... +++.+++++++++++.+.|++.|+++.. +. .+.++|+.++...+ ..++.
T Consensus 250 ~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~ 320 (392)
T 2z9v_A 250 VSEINGLDVALDLY---LNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD------EKALR 320 (392)
T ss_dssp HHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC------HHHHH
T ss_pred HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC------HHHHH
Confidence 45555555555321 233 5667788889999999999888887765 32 46788898863221 12566
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEe-c-cCCHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCF-A-NMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~-~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+.+++||.+.||..+. .++++||++ + ..+++++++++++|++++++.+
T Consensus 321 ~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 321 QAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 777665699999998643 468999995 6 5699999999999999997643
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=274.06 Aligned_cols=298 Identities=17% Similarity=0.198 Sum_probs=221.3
Q ss_pred cCCCCCcHHHHHH-HHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQA-VAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~a-ia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|.+..+..+++++ ++++++ .+ +|++|+|+++|+.+++.++.++||.|++++|+|+++...++.. |+++
T Consensus 49 ~~~~~~~~~l~~~~la~~~~--------~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~ 117 (371)
T 2e7j_A 49 EIKTPPIHDFIHNQLPKFLG--------CD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNI 117 (371)
T ss_dssp ----CCHHHHHHTHHHHHTT--------SS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEE
T ss_pred hhHHHHHHHHHHHHHHHHcC--------CC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHc-CCeE
Confidence 4456789999999 999986 23 8999999999999999999999999999999999998888776 9999
Q ss_pred EEEe--ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 161 VPVH--CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 161 ~~v~--~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+.++ .+ .++.+|+++|++++++.... .++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...+
T Consensus 118 ~~v~~~~~--~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~ 191 (371)
T 2e7j_A 118 ALVPKTDY--PDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM 191 (371)
T ss_dssp EEECCCCT--TTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB
T ss_pred EEeecccC--CCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC
Confidence 9999 65 35789999999999753211 47899999999999999999 68889999999999999999986322
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------cCCCchHHHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------FGLVSSQTQYLLA 309 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------~~~vs~~~q~~~~ 309 (477)
. .++... +..++++|+||.++. |.|+||++++++.+...++.... .+..+...+.++.
T Consensus 192 ~----~~~~~~--------~~di~~~s~sK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 258 (371)
T 2e7j_A 192 P----VSLKEI--------GADFIVGSGHKSMAA-SGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLM 258 (371)
T ss_dssp C----CCHHHH--------TCSEEEEEHHHHSSC-CSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHH
T ss_pred C----CChhhc--------CCCEEEecCCcCCCC-CCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHH
Confidence 1 233222 233789999999984 45999999977643220222221 2333444444444
Q ss_pred HhcCChhhHHHHHHHHHHHH--HHHHHHHHHHHhhCCCeEecCC--ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe
Q 011801 310 SMLSDDEFVDNFLVETSKRL--AKRHHNFTKGLEQVGINCLKSN--AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l--~~r~~~l~~~L~~~gi~~~~~~--~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI 385 (477)
..+.. ++. +..+++ +++++++.+.|++.|+++..+. .+.++|++++ + ..++.+.+. ++||
T Consensus 259 ~~l~~---~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~l~-~~gi 322 (371)
T 2e7j_A 259 ASFPH---VRE---RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---V------LYEISKKAK-GGRF 322 (371)
T ss_dssp HHHHH---HHH---HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---H------HHHHHHHSS-SGGG
T ss_pred HHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---C------HHHHHHHHH-HCCE
Confidence 44432 121 445566 7778889999988888887653 3568999886 1 124555555 6799
Q ss_pred EEeCCCCCCC----CCCCEEE-EEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQC----TEPGWFR-VCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~----~~~~~~R-l~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.| ..|.. ..++++| ++++. .+++++++++++|++++++
T Consensus 323 ~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 323 FLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 9988 43322 1267899 99986 5899999999999999875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=269.38 Aligned_cols=299 Identities=13% Similarity=0.123 Sum_probs=224.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVP 162 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~ 162 (477)
.+..+++++++++++ .+++ +|++|+|+++|+.+++.++.++||.|+++.|+|+++. ..++.. |.+++.
T Consensus 52 ~~~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~ 122 (393)
T 2huf_A 52 KIMDDIKEGVRYLFQ--------TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRY-GADVRV 122 (393)
T ss_dssp HHHHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHc-CCeeEE
Confidence 356889999999986 3555 8999999999999999999999999999999998742 334445 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+++ +....
T Consensus 123 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~---~~~~~ 189 (393)
T 2huf_A 123 VKSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS---LGGAP 189 (393)
T ss_dssp EECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC
T ss_pred EeCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc---cCCCC
Confidence 99864 4578999999998753 6889999999999999999 8889999999999999999986 33221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcc-cCCCCceEEEEEeCCHHHHHHHHHh----cc---------------------
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKD-MGLPGFRVGIVYSFNDTVVNCGRKM----SS--------------------- 296 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~-~g~~G~RvG~i~~~~~~i~~~~~~~----~~--------------------- 296 (477)
..+ . ..+.++++.|+||. +|++|+ ||+++++ .+.+.++.. .+
T Consensus 190 -~~~----~----~~~~d~~~~s~sK~l~g~~G~--G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (393)
T 2huf_A 190 -MFM----D----RWEIDAMYTGSQKVLGAPPGI--TPVSFSH-RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIY 257 (393)
T ss_dssp -CCT----T----TTTCSEEECCSSSTTCCCSSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred -cch----h----hcCccEEEECCCcccccCCCe--EEEEECH-HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCC
Confidence 111 1 22456888999997 557786 9999964 444444432 11
Q ss_pred cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHH
Q 011801 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEI 373 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~ 373 (477)
+++.+...+.++..+++... +..+++..++++++++++.+.|++.|+++..+. +++++|++++...+ ..
T Consensus 258 ~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 329 (393)
T 2huf_A 258 HHTISSTLLYGLREAIAMAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVD------WL 329 (393)
T ss_dssp SCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCC------HH
T ss_pred CCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCC------HH
Confidence 12345555565555554321 123566778888999999999998888776653 35588888863211 12
Q ss_pred HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-AN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++.+.+++++||.+++|..|. .++++||++ +. .+++++++++++|++++++.+
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 330 KAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp HHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 577777776799999998653 468999999 53 378899999999999997644
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=267.15 Aligned_cols=298 Identities=13% Similarity=0.143 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccc-hHHHHhhhCCcEEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAA-FDRDLSWRTGVQIVPV 163 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~-~~~~~~~~~g~~~~~v 163 (477)
.+..++|+++|++++. ..+++++++|+|+++|+.+++.++.++||.|++++ |+|+. +...+... |.+++.+
T Consensus 37 ~~~~~l~~~la~~~g~------~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v 109 (366)
T 1m32_A 37 GVVEQIRQQLTALATA------SEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHAY 109 (366)
T ss_dssp TTHHHHHHHHHHHHCS------SSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEEE
T ss_pred HHHHHHHHHHHHHhCC------CCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHh-CCceEEE
Confidence 5789999999999961 12346899999999999999999999999988776 56654 55556666 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. ++.+|+++|++++++ +.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.. ..+
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~~~- 176 (366)
T 1m32_A 110 DCGE--VARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFG---GIP- 176 (366)
T ss_dssp ECCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTT---TSC-
T ss_pred eCCC--CCCCCHHHHHHHHhc----CCCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCcccc---CcC-
Confidence 9864 467899999999875 235789999999999999999 788999999999999999999732 111
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-c-----------------c--cCCCchH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-S-----------------S--FGLVSSQ 303 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~-----------------~--~~~vs~~ 303 (477)
.++. ..+.+++++|+||.++ .+.++||++++++.+ +.+... . . .+..+..
T Consensus 177 ~~~~--------~~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (366)
T 1m32_A 177 MDIA--------ALHIDYLISSANKCIQ-GVPGFAFVIAREQKL-AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTH 246 (366)
T ss_dssp CCTT--------TTTCSEEEEESSSTTC-CCSSEEEEEEEHHHH-TTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHH
T ss_pred cccc--------ccCccEEEecCccccc-CCCceEEEEECHHHH-HhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHH
Confidence 1211 1235588999999874 334579999966533 222111 0 0 1345666
Q ss_pred HHHHHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHhhCCCeEecC---CceEEEEeeccc--hhhccCchHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNF--LVETSKRLAKRHHNFTKGLEQVGINCLKS---NAGLFFWMDLRH--LLKEKTLEGEIALW 376 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~--~~~~~~~l~~r~~~l~~~L~~~gi~~~~~---~~g~~~~~~l~~--~~~~~~~~~e~~l~ 376 (477)
.+.++...++.. ... +++.+++++++++++.+.|++.|+++..+ .+++++|++++. ... ..++.
T Consensus 247 ~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 317 (366)
T 1m32_A 247 TVLAFAQALKEL---AKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYR------FSEFY 317 (366)
T ss_dssp HHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCC------HHHHH
T ss_pred HHHHHHHHHHHH---HHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCCC------HHHHH
Confidence 666666666432 223 56678888999999999999888876654 367799999874 111 22466
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+.++ ||.+.||..| .++++|++++.. +++++++++++|++++++
T Consensus 318 ~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 318 RRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 666655 9999999877 367999999875 799999999999998764
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=270.42 Aligned_cols=285 Identities=14% Similarity=0.199 Sum_probs=211.0
Q ss_pred cccCCCCCcH---HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HH
Q 011801 80 AIFQDYHGLP---EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DL 152 (477)
Q Consensus 80 ~~Y~~~~G~~---~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~ 152 (477)
..|++ .|.+ ++++++|++++ . +++++++|+++|+..++.+++++||.|++++|+|+++.. .+
T Consensus 54 ~~Y~~-~~~~~~~~l~~~ia~~~g--------~--~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 54 YIYTR-LGNPTVSNLEGKIAFLEK--------T--EACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp CCBTT-TCCHHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHH
T ss_pred ccccC-CcChHHHHHHHHHHHHhC--------C--CcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHH
Confidence 35766 4666 89999999986 1 368888888999999999999999999999999999887 56
Q ss_pred hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCeEEEecc
Q 011801 153 SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND-KNIHLVCDE 231 (477)
Q Consensus 153 ~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-~~~~lI~De 231 (477)
+.. |++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+||
T Consensus 123 ~~~-g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 123 TKF-GIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HHT-TCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEEC
T ss_pred HHc-CCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEEC
Confidence 655 9999999864 57888887753 7999999999999999998 8999999999 999999999
Q ss_pred cccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhccc---CCCchHHHHH
Q 011801 232 IYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMSSF---GLVSSQTQYL 307 (477)
Q Consensus 232 ~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~ 307 (477)
+|+.+.+.. ++ . .++++++.|+||.+|.+|+|+ ||++++++.+.+.+...... ..++++.|++
T Consensus 186 ~~~~~~~~~----~~-~--------~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 252 (404)
T 1e5e_A 186 TFCSPMITN----PV-D--------FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWL 252 (404)
T ss_dssp TTTCTTTCC----GG-G--------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHH
T ss_pred CCchhhhCC----cc-c--------cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999765431 11 1 146688999999999999998 99999776655355544333 2467788888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---------------CCeEecCC----ceEEEEeeccchhhccC
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---------------GINCLKSN----AGLFFWMDLRHLLKEKT 368 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---------------gi~~~~~~----~g~~~~~~l~~~~~~~~ 368 (477)
+...+.+.+. ..+++.++.+.+.+.|++. |+++.+++ ++++.| +++..
T Consensus 253 ~~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~----- 319 (404)
T 1e5e_A 253 ITRGLSTLNI-------RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSG----- 319 (404)
T ss_dssp HHHHHTTHHH-------HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTH-----
T ss_pred HHHhHhHHHH-------HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCC-----
Confidence 8888876321 1222233334444444433 22222222 666666 77632
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCCC-----------------------CC--CCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQC-----------------------TE--PGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~~-----------------------~~--~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
.+....++++.|| +.+|.+|+. .+ ++++||+++. |++++++++|+++
T Consensus 320 ----~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~a 391 (404)
T 1e5e_A 320 ----FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQG 391 (404)
T ss_dssp ----HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHH
Confidence 1234557788899 667776652 12 6899999995 7889999999988
Q ss_pred Hhh
Q 011801 424 VQQ 426 (477)
Q Consensus 424 ~~~ 426 (477)
++.
T Consensus 392 l~~ 394 (404)
T 1e5e_A 392 LDA 394 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=269.07 Aligned_cols=331 Identities=14% Similarity=0.160 Sum_probs=223.3
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
|..+|+|+.++|+.+.+.+.+.+.+... ....|.+..+..+||+++|++++ .+++++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~ 58 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAEV-------------GDDVYGEDPTINELERLAAETFG----------KEAALF 58 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCCC-------------CCGGGTCCHHHHHHHHHHHHHHT----------CSEEEE
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCCC-------------CCcccCCChHHHHHHHHHHHHhC----------CceEEE
Confidence 5678999999999987777777765310 11256666688999999999986 246788
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
++|+++|+.+++.++.+|||.|+++.|+|..... .+... |++++.+ .+ .++.+|+++|++++++......+++
T Consensus 59 ~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~ 134 (347)
T 1jg8_A 59 VPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTS 134 (347)
T ss_dssp ESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEE
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhcc-CeEEEEe-cC--CCCccCHHHHHHHhccccccccCce
Confidence 8888999999999999999999999999975332 34445 9999888 43 2467899999988752100112689
Q ss_pred EEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEeccccccc--ccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 194 GLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT--VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 194 ~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~--~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+|++++|+||| |.+++.+++++|+++|+++|++||+||+|... .+.+. +...+.. ..+. ++.|+||.+
T Consensus 135 ~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~----~~d~--~~~s~sK~l 205 (347)
T 1jg8_A 135 LIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV---PVKEYAG----YADS--VMFCLSKGL 205 (347)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---CHHHHHH----TCSE--EEEESSSTT
T ss_pred EEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC---ChHHhcc----cccE--EEEeccccc
Confidence 99999999999 99999999999999999999999999987521 11222 2222222 2343 345899999
Q ss_pred CCCCceEEE-EEeCCHHHHHHHHHhc-ccC---CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 271 GLPGFRVGI-VYSFNDTVVNCGRKMS-SFG---LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 271 g~~G~RvG~-i~~~~~~i~~~~~~~~-~~~---~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
|.+ +|+ +++ ++.+.+.+++.. .++ ..+.+.+.++...|... .+...+ ..++++.+.+.|++.|+
T Consensus 206 ~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~-~~~~~~~l~~~L~~~~~ 274 (347)
T 1jg8_A 206 CAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM------VDRLKE-DHENARFLALKLKEIGY 274 (347)
T ss_dssp CCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS------STTHHH-HHHHHHHHHHHHHHHTC
T ss_pred CCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHhcCc
Confidence 743 574 555 444444433322 121 12334444444444321 111111 22455777788877677
Q ss_pred eEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-cCCHHHHHHHHHHHHHH
Q 011801 346 NCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAF 423 (477)
Q Consensus 346 ~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~~~~e~l~~~l~~l~~~ 423 (477)
++. .+..+.|+|++++.. ... ..++.+.+. +.||.++++. ++++|++++ ..+++++++++++|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 275 SVNPEDVKTNMVILRTDNL----KVN-AHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp BCCGGGCCSSEEEEECTTS----SSC-HHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eeccCCCcceEEEEEcccc----cCC-HHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 652 334556899998731 011 125667775 5699999752 568999995 35899999999999998
Q ss_pred Hhh
Q 011801 424 VQQ 426 (477)
Q Consensus 424 ~~~ 426 (477)
+++
T Consensus 343 l~~ 345 (347)
T 1jg8_A 343 FRK 345 (347)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.3e-31 Score=264.24 Aligned_cols=297 Identities=16% Similarity=0.181 Sum_probs=222.6
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCC--CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDP--DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~--~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~ 162 (477)
...++++.++++++ .++ ++|++|+|+++|+. ++..++++||.|++++|+|.+ +...++.. |.+++.
T Consensus 36 ~~~~~~~~la~~~~--------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~ 105 (384)
T 3zrp_A 36 ALAYSLKGLRYVMG--------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRY-PVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHHT--------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTS-SCEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHc-CCcEEE
Confidence 45677888888876 344 88999999999999 989999999999999999965 54555555 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ...
T Consensus 106 v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~~~ 172 (384)
T 3zrp_A 106 LRPSP--GDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVG---AEE 172 (384)
T ss_dssp ECCST--TCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTT---TSC
T ss_pred ecCCC--CCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECccccc---Ccc
Confidence 99875 4578999999999753 6899999999999999999 888999999999999999999732 111
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH------------HHHh-----------c-ccC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC------------GRKM-----------S-SFG 298 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~------------~~~~-----------~-~~~ 298 (477)
.++. ..+..+++.|+||.++ ++.++||++++++.+... .... . .++
T Consensus 173 -~~~~--------~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 242 (384)
T 3zrp_A 173 -VKAE--------EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFA 242 (384)
T ss_dssp -CCTT--------TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSS
T ss_pred -cccc--------ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCC
Confidence 1111 2245688999999885 345599999976654433 0111 1 113
Q ss_pred CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHH
Q 011801 299 LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 299 ~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+.+...+.++...+.... +..+++..++++++++++.+.|++.|+++..+. .+.++|+.++. .+ ..+
T Consensus 243 ~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~------~~~ 313 (384)
T 3zrp_A 243 TPPVHVILQLAEAFRLIE--KEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-AD------PQK 313 (384)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SC------HHH
T ss_pred CCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CC------HHH
Confidence 455555555555554211 222667788889999999999999888877666 56788998875 11 124
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+.+.+.++ ||.+++|..+.. +++|++++. .+++++++++++|++++++.+.
T Consensus 314 ~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 314 VLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp HHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 66666655 999999875432 899999875 4899999999999999987553
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=267.95 Aligned_cols=298 Identities=13% Similarity=0.129 Sum_probs=222.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHHhh--hCCcEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDLSW--RTGVQI 160 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~~~--~~g~~~ 160 (477)
+..++++++|++++ .++++|++|+|+++|+.+++.++. ++||.|++++|+|+.+...+.. ..|+++
T Consensus 44 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 44 AVQEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEE
Confidence 46788899999886 467899999999999999999987 8999999999999988766543 139999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
+.++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|+++|+++|++ |+||+|+ +..
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~---~g~ 180 (382)
T 4eb5_A 116 EYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATAS---VGQ 180 (382)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTT---BTT
T ss_pred EEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchh---cCC
Confidence 9999874 567999999988753 7899999999999999999 78899999999999 9999998 332
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-HHHHHH-----HhcccCCCchHHHHHHHHhcCC
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-VVNCGR-----KMSSFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-i~~~~~-----~~~~~~~vs~~~q~~~~~~L~~ 314 (477)
.+ .++... +.+++++|+||.+|.+| +||++++++. +..... .....+..+...+.++...+..
T Consensus 181 ~~-~~~~~~--------~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 249 (382)
T 4eb5_A 181 IE-VDVEKI--------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI 249 (382)
T ss_dssp BC-CCHHHH--------TCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH
T ss_pred cc-cCcccc--------CCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHH
Confidence 22 222221 34578899999988666 7999887652 211100 0111233455555555555542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 315 DEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 315 ~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
..+.+++.+++++++++++.+.|+++ |+++..+.+ +.++|+.++. .+ ..++.+.+. +.||.+.+|
T Consensus 250 ---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~-~~gi~v~~g 318 (382)
T 4eb5_A 250 ---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-IE------GESIVLSLD-MAGIQASTG 318 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-SC------HHHHHHHHH-HHTCBCBCC
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-cC------HHHHHHHHH-HCCEEEecc
Confidence 13346777888899999999999987 777766542 4467787762 11 124666665 569999999
Q ss_pred CCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 391 SSFQCT-----------------EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 391 ~~f~~~-----------------~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
..|... .++++||+++. .+++++++++++|++++++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 876432 25799999985 4899999999999999976543
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-31 Score=267.67 Aligned_cols=295 Identities=14% Similarity=0.150 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
....+++++++++++ . +..++++++++|+..++.++.++||.|+++.|+|+.+...+... |.++++++.
T Consensus 104 ~~~~~l~~~la~~~g--------~--~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~ 172 (409)
T 3kki_A 104 YDKPMIEKRLAKFTG--------F--DECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYA-NAQAHPFMH 172 (409)
T ss_dssp TTSCHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHT-TCEEEEECT
T ss_pred HHHHHHHHHHHHHhC--------C--CeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHc-CCeEEEecC
Confidence 446789999999986 1 23455555579999999999999999999999999998888876 999988764
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.|+++|++++++. ++++|++++|+||||.+.+ +++|+++|+++|++||+||+|++..++... ..
T Consensus 173 -------~d~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~ 236 (409)
T 3kki_A 173 -------NNCDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNG-AG 236 (409)
T ss_dssp -------TCHHHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CC
T ss_pred -------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCC-Cc
Confidence 4799999999763 5789999999999999999 889999999999999999999875454221 12
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cC-CCchHHHHHHHHhcCChhhHHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FG-LVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~-~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
...... ...+..+++.||||.+|.+| ||++++++.+......... +. ..+.+.+.++.+.++.. +. .
T Consensus 237 ~~~~~~---~~~~~di~~~s~sK~~~~~g---g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~-~ 306 (409)
T 3kki_A 237 LLAELG---LTREVHFMTASLAKTFAYRA---GAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII---ES-A 306 (409)
T ss_dssp HHHHHT---CGGGCSEEEEESSSTTCSSC---EEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH---HH-C
T ss_pred chhhcC---CCCCCCEEEeecchhhCCCc---eEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH---hc-C
Confidence 222211 01234588899999999664 9999976544332221111 22 24445555555555432 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWF 401 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~ 401 (477)
.+.+++++++++++.+.|++.|+++. ..++++|+.++... ...++.+.++++ ||.+.|+..+. ..+++++
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~i 377 (409)
T 3kki_A 307 DNRRQHLDRMARKLRIGLSQLGLTIR--SESQIIGLETGDER------NTEKVRDYLESN-GVFGSVFCRPATSKNKNII 377 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSEEEEEEESHH------HHHHHHHHHHHT-TEECEEECTTSSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccC--CCCCEEEEEeCCHH------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcEE
Confidence 56677888999999999999988765 35678898887432 123566777766 99998865432 3346799
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|++++. .+++++++++++|+++++.
T Consensus 378 Ri~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 378 RLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 999975 4899999999999999975
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-31 Score=272.26 Aligned_cols=342 Identities=16% Similarity=0.131 Sum_probs=240.7
Q ss_pred CCccccccccccc-cc-cHHHHHHHHHhCCCCcccccccccccccccccCC----CCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 36 NPGGVIQLGLAEN-QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD----YHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 36 ~~~~~i~l~~~~n-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+...+|||+.+.+ .+ +.+.+.+.+.+.-.. -+. ....|.. .....+++++++++++ .
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~-----~~~----~~~~~~~~~G~~~~~~~l~~~la~~~g--------~ 124 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEK-----FGS----GTCGSRMLNGTFHDHMEVEQALRDFYG--------T 124 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHH-----HCS----CCCSCTTTTCCCHHHHHHHHHHHHHHT--------C
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHH-----hCC----CCcccccccCCcHHHHHHHHHHHHHhC--------C
Confidence 4567899998864 21 334455544432100 000 0111222 2334788999999885 2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
++.++++++++|+..++.++.++||.|+++.|+|+.+...++.. |.+++.++. +|+++|++++++.. .
T Consensus 125 --~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~-g~~~~~~~~-------~d~~~le~~l~~~~--~ 192 (427)
T 2w8t_A 125 --TGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG-NAEIVRFRH-------NSVEDLDKRLGRLP--K 192 (427)
T ss_dssp --SEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHS-CSEEEEECT-------TCHHHHHHHHHTSC--S
T ss_pred --CceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCeeEEeCC-------CCHHHHHHHHHhcc--C
Confidence 24555666677999999999999999999999999998888876 999988873 48899999886421 1
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
.++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+++.+... ..+..+... ..++.+++++||||.
T Consensus 193 ~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~-g~~~~~~~~---~~~~~di~~~s~sK~ 265 (427)
T 2w8t_A 193 EPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN-GRGVYEAQG---LEGQIDFVVGTFSKS 265 (427)
T ss_dssp SSCEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-SCCHHHHTT---CTTCCSEEEEESSST
T ss_pred CCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCchHhhcC---CCcCCcEEEecchhh
Confidence 26899999999999999999 88999999999999999999998766532 233333321 133557899999999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHh-ccc---CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGRKM-SSF---GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~~~-~~~---~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
+|++| ||++++++.+ +.+... ..+ +..++..+.++...|+..+ .+++.+++++++++++.+.|++.|+
T Consensus 266 ~g~~g---G~v~~~~~l~-~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 266 VGTVG---GFVVSNHPKF-EAVRLACRPYIFTASLPPSVVATATTSIRKLM----TAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp TCSCC---EEEEECCTTG-GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCC---CEEEeCHHHH-HHHHHhcccccccCCCCHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99887 9999966543 333222 111 2345555555555554321 1356677888899999999998898
Q ss_pred eEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011801 346 NCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-EPGWFRVCFAN-MDDDTLQVALNRIAA 422 (477)
Q Consensus 346 ~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-~~~~~Rl~~~~-~~~e~l~~~l~~l~~ 422 (477)
++. ++..|.++|+.++... ...++++.++++ ||.+.||..|+.. +.+++|++++. .+++++++++++|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 338 RLGTETCDSAIVAVMLEDQE------QAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp EESCSSCCSSEEEEEESSHH------HHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEECCHH------HHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 877 4425578999987421 223577777765 9999999877642 34699999986 399999999999999
Q ss_pred HHhhhh
Q 011801 423 FVQQDK 428 (477)
Q Consensus 423 ~~~~~~ 428 (477)
++++..
T Consensus 411 ~l~~~~ 416 (427)
T 2w8t_A 411 AGRAVG 416 (427)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 987643
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-31 Score=264.57 Aligned_cols=292 Identities=13% Similarity=0.155 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc----CCCCeEEEcCCCccchHHHHhh--hCCcEEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA----NPGDAFLVPSPYYAAFDRDLSW--RTGVQIVP 162 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~----~~Gd~vlv~~P~y~~~~~~~~~--~~g~~~~~ 162 (477)
.++++.++++++ .++++|++|+|+++|+.+++.++. ++||.|+++.|+|+.+...+.. ..|++++.
T Consensus 46 ~~~~~~la~~~~--------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (382)
T 4hvk_A 46 QEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEY 117 (382)
T ss_dssp HHHHHHHHHHTT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcC--------CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEE
Confidence 467777777765 567899999999999999999987 9999999999999988765443 13999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+ +|+|++|+. ....
T Consensus 118 v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~---~~~~ 182 (382)
T 4hvk_A 118 IPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASV---GQIE 182 (382)
T ss_dssp ECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB---TTBC
T ss_pred eccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc---CCCC
Confidence 99873 568999999998864 7899999999999999999 7788999999999 999999873 2211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHHHHHhcC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~~~~~L~ 313 (477)
.+.... +..+++.|+||.+|.+| +|+++++++. .+... ...+..+...+.++...+.
T Consensus 183 -~~~~~~--------~~d~~~~s~~K~~g~~g--~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4hvk_A 183 -VDVEKI--------GADMLTISSNDIYGPKG--VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp -CCHHHH--------TCSEEEEESGGGTSCTT--CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred -CCchhc--------CCCEEEEeHHHhcCCCc--eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHHH
Confidence 222211 34578899999888666 6777765543 11111 0123345566666555554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP 389 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p 389 (477)
+...++++..++++++++++.+.|+++ |+.+..+.+ +.++++.++.. + ..++.+.+ .++||.+++
T Consensus 249 ---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l-~~~gi~v~~ 317 (382)
T 4hvk_A 249 ---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-E------GESIVLSL-DMAGIQAST 317 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-C------HHHHHHHH-HHTTCBCBC
T ss_pred ---HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-C------HHHHHHHH-HHCCEEEee
Confidence 224567788889999999999999987 777765543 23666666531 1 12455555 456999999
Q ss_pred CCCCCCCC-----------------CCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 390 GSSFQCTE-----------------PGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 390 g~~f~~~~-----------------~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
|+.|.... ++++|++++.. +++++++++++|++++++.+
T Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~ 374 (382)
T 4hvk_A 318 GSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLR 374 (382)
T ss_dssp C--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98876543 57999999854 89999999999999997654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=265.21 Aligned_cols=293 Identities=13% Similarity=0.031 Sum_probs=219.6
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
+..++|+++|++++ .++++|++|+|+++|+.+++.++.++||.|++++|+|+++. ..++.. |.+++.++
T Consensus 35 ~~~~l~~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 105 (352)
T 1iug_A 35 VFLKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLD 105 (352)
T ss_dssp HHHHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHc-CCceEEEe
Confidence 46899999999986 45789999999999999999999999999999999998864 334445 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCCC
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~~ 242 (477)
++. ++.+|+++|++ .++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|+ ++..+
T Consensus 106 ~~~--~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~---~~~~~ 168 (352)
T 1iug_A 106 YPY--GDTPRPEDVAK---------EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLVGE 168 (352)
T ss_dssp CCT--TCCCCTTTSCC---------SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTTBC
T ss_pred CCC--CCCCCHHHHhc---------cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCcc---ccCcc
Confidence 864 45678888765 27889999999999999999 78899999999 99999999997 33222
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH------------HHH---HhcccCCCchHHHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN------------CGR---KMSSFGLVSSQTQYL 307 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~------------~~~---~~~~~~~vs~~~q~~ 307 (477)
..+.. .+..+++.|+||.++ .+.++||++++++.+.. ... .....++.+...+.+
T Consensus 169 -~~~~~--------~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 238 (352)
T 1iug_A 169 -VALEA--------MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLA 238 (352)
T ss_dssp -CCSGG--------GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred -eeccc--------cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHH
Confidence 11111 134577899999553 22348999996654422 111 112234466677776
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
+..++... +.++++.+++++++++++.+.|++.|+++..+. .++++|++++...+ ..++.+.+.+ .||.
T Consensus 239 ~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~-~gi~ 308 (352)
T 1iug_A 239 VAAVLEEV---LPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEAFAQ-RGAV 308 (352)
T ss_dssp HHHHHHHH---GGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHHHHT-TTEE
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCC------HHHHHHHHHH-CCEE
Confidence 66666432 122567788888999999999998888887664 66789999874221 1246666664 5999
Q ss_pred EeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 387 VSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
++||.. +..++++|++++.. +++++++++++|++++++.
T Consensus 309 v~~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 309 IAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp CEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC--ccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 999973 23468999999865 7999999999999998753
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=269.78 Aligned_cols=336 Identities=14% Similarity=0.108 Sum_probs=230.2
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCC---CcHH--HHH-----HHHHHHhcccCCCC
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYH---GLPE--FRQ-----AVAKFMGKGRGGRV 107 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---G~~~--lr~-----aia~~~~~~~g~~~ 107 (477)
.++|+++.++|++ ++.+.+.+.+.-.. .....|++.. |.+. +++ .++++++
T Consensus 23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g------- 83 (407)
T 2dkj_A 23 REGLELIASENFV-SKQVREAVGSVLTN-----------KYAEGYPGARYYGGCEVIDRVESLAIERAKALFG------- 83 (407)
T ss_dssp HTSEECCTTCCCC-CHHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-------
T ss_pred hcceeeccCCCCC-CHHHHHHHHhhhhc-----------CcccCCCcccccCCchHHHHHHHHHHHHHHHHhC-------
Confidence 4679999999998 44455555442100 0123454322 4443 444 5555554
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCc--EEEEEeccCCCCcccCHHHHHHHH
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGV--QIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
.++++|++++|+ +|+.+++.++.++||.|+++.|+|+.+. ..++.. |. ..+++++++ +++.+|+++|++++
T Consensus 84 -~~~~~i~~~sGt-~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~l 159 (407)
T 2dkj_A 84 -AAWANVQPHSGS-QANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFS-GKLYKVVSYGVRP-DTELIDLEEVRRLA 159 (407)
T ss_dssp -CSEEECCCSSHH-HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECCCT-TTSSCCHHHHHHHH
T ss_pred -CCcceEEecchH-HHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhc-CceEEEEecCCCc-ccCccCHHHHHHHH
Confidence 345567677775 5999999999999999999999999884 344444 66 444444342 46789999999999
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-cccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
++. ++++|++++|+|| ...+ +++|.++|+++|+++|+||+|+. +.+.+..... . . ..++
T Consensus 160 ~~~-----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~----~-----~-~~di 219 (407)
T 2dkj_A 160 LEH-----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP----L-----P-YAHV 219 (407)
T ss_dssp HHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC----T-----T-TCSE
T ss_pred hhc-----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc----c-----c-cccE
Confidence 743 6889999999998 5566 88999999999999999999986 4333322111 1 1 2457
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCC--chHHHH-HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV--SSQTQY-LLASMLSDDEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~v--s~~~q~-~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
+++|+||.+ +|.|+||++++++.+.+.+......+.. ..+.+. ++...+.... +.++++..++++++++++.+
T Consensus 220 ~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~ 295 (407)
T 2dkj_A 220 VTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL--QPEFKEYSRLVVENAKRLAE 295 (407)
T ss_dssp EEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHH
Confidence 899999965 6889999999755555555443322222 223333 4444554311 23467778888999999999
Q ss_pred HHhhCCCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC----CCCCCCEEEEEecc-----C
Q 011801 339 GLEQVGINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF----QCTEPGWFRVCFAN-----M 408 (477)
Q Consensus 339 ~L~~~gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f----~~~~~~~~Rl~~~~-----~ 408 (477)
.|++.|+++.. +..|+|+|++++... .. ..++.+.+ .++||.+.+|..| ....++++|++++. .
T Consensus 296 ~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~ 369 (407)
T 2dkj_A 296 ELARRGYRIVTGGTDNHLFLVDLRPKG----LT-GKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGF 369 (407)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECGGGT----CC-HHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred HHHhCCceeecCCCCceEEEEECcccC----CC-HHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCC
Confidence 99998988775 356789999997410 01 12455555 5679999999865 22346799999964 5
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 011801 409 DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~ 426 (477)
+++++++++++|++++++
T Consensus 370 ~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 370 TPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999999977
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=263.82 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=223.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCc-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDR-IVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~-i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++.++++++ .++++ +++++|+++|+++++.++.++||.|+++.|+|++ +...++.. |++++.++
T Consensus 48 ~~~~~~~la~~~~--------~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 118 (411)
T 3nnk_A 48 MNEVMALYRGVFR--------TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRC-RAEVHTIE 118 (411)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHc-CCeEEEEe
Confidence 3567777777775 34444 8889999999999999999999999999999977 77777766 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++ .++.+|+++|++++++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+++. ...+ .
T Consensus 119 ~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~---~~~~-~ 184 (411)
T 3nnk_A 119 VP--WGEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASL---GGNP-L 184 (411)
T ss_dssp CC--TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTB---TTBC-C
T ss_pred cC--CCCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCccc---CCcc-c
Confidence 85 35678999999999754 7899999999999999999 77889999999999999999873 2211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-----------------------------
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS----------------------------- 295 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~----------------------------- 295 (477)
.. . ..+..+++.|+||.++ ++.++||++++++.+ +.+....
T Consensus 185 ~~----~----~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~ 254 (411)
T 3nnk_A 185 ET----D----VWGLDAVSAGMQKCLG-GPSGTSPITLSARME-EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMV 254 (411)
T ss_dssp CT----T----TTTCSEEECCSTTTTC-CCSSEEEEEECHHHH-HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHH
T ss_pred ch----h----ccCCcEEEecCccccC-CCCceEEEEECHHHH-HHHhhcccccccccccccccccCCCCcccccchHHH
Confidence 11 1 2245688999999854 445699999966544 3333221
Q ss_pred ---------ccCCCchHHHHHHHHhcCChhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeeccc
Q 011801 296 ---------SFGLVSSQTQYLLASMLSDDEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRH 362 (477)
Q Consensus 296 ---------~~~~vs~~~q~~~~~~L~~~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~ 362 (477)
..++.+...+.++...+... ... +++..++++++++++.+.|++.|+++..+.+ +.++|+.++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (411)
T 3nnk_A 255 MDYWGPERLNHHTEATTALFGARECARLI---LQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQ 331 (411)
T ss_dssp HHHHSTTCCCCSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCT
T ss_pred HhhhccccCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCC
Confidence 11334556666665555432 222 6777888899999999999999988776543 6788998874
Q ss_pred hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-ccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-ANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 363 ~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+ ..++.+.+++++||.++||. +...++++||++ +.. +++++++++++|++++++..
T Consensus 332 ~~~------~~~l~~~l~~~~gi~v~~g~--~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 332 GIN------GDQARKLMLEDFGIEIGTSF--GPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp TCC------HHHHHHHHHHHHSEEEEECC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCC------HHHHHHHHHHhcCeEEeCcc--CCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 322 12567777777799999984 333467999998 644 79999999999999998654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-31 Score=271.95 Aligned_cols=350 Identities=10% Similarity=0.074 Sum_probs=227.4
Q ss_pred CCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||++.+.+ .+ +++.+.+.+.+.-+.. + .....|.+..+..+|+++|++++. + . .+
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-----~----~~~~~~~~~~~~~~l~~~la~~~~---~---~-~~ 102 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-----S----HTCFQVLAYEPYLELCEIMNQKVP---G---D-FA 102 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-----S----CCCTTTEECHHHHHHHHHHHHHSS---C---S-SC
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC-----C----CccccccCCHHHHHHHHHHHHhCC---c---c-cc
Confidence 3456789987775 33 3455666555531110 0 001134555688999999999984 1 1 35
Q ss_pred CcEEEeCChHHHHHHHHH---HhcCCCCeEEEcCCCccchHH-HHhhhCCcE-------------EEEEeccC---CCCc
Q 011801 112 DRIVMGGGATGANELIMF---CLANPGDAFLVPSPYYAAFDR-DLSWRTGVQ-------------IVPVHCDI---SNNF 171 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~---~l~~~Gd~vlv~~P~y~~~~~-~~~~~~g~~-------------~~~v~~~~---~~~f 171 (477)
++|++|+|+++|+++++. .+.++| .|++++|+|+++.. .+... |.+ ++.++++. ..++
T Consensus 103 ~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 180 (426)
T 1sff_A 103 KKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALT-GKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180 (426)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHS-SCCTTTTTTSCCCCSSEEEECCCBGGGTBCH
T ss_pred cEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhc-CCccccccccCCCCCCcEEeCCCccccccch
Confidence 899999999999999988 677776 89999999987654 33332 432 66666542 1245
Q ss_pred ccCHHHHHHHHHHHHHhCCCeeEEEE-eCCCCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 172 KITREALEAAYERAQEASINIKGLII-TNPSNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 172 ~i~~~~l~~~~~~~~~~~~~~k~vii-~nP~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
.+|+++|++++++.. .+.++++|++ ++|+| || .+.+.+++++|.++|+++|++||+||+|+++.+.+.. .++. .
T Consensus 181 ~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~-~ 256 (426)
T 1sff_A 181 DDAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL-FAME-Q 256 (426)
T ss_dssp HHHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGG-G
T ss_pred HHHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch-hhhh-h
Confidence 678999999886410 1126777666 35678 99 7889999999999999999999999999976554432 2211 1
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
. +....+.||||.+|. |+|+||++++++ +.+.+.. .......++++|.++.++|+..+ . .+..+
T Consensus 257 ~-------~~~~di~s~sK~~~~-GlriG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~~ 322 (426)
T 1sff_A 257 M-------GVAPDLTTFAKSIAG-GFPLAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLLQ 322 (426)
T ss_dssp T-------TSCCSEEEECGGGGT-SSCCEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHHH
T ss_pred c-------CCCCCEEEEcccccC-CCceEEEEEcHH-HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHHH
Confidence 1 111224499999995 999999999654 4333322 11223467788888876664211 0 01223
Q ss_pred HHHHHHHHHHHHHhh----CC-CeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 328 RLAKRHHNFTKGLEQ----VG-INCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~----~g-i~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
++++.++.+.+.|++ .. +....+. |+|+|++++..... .......++++.+++ +||.+.||+.| +++
T Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~ 396 (426)
T 1sff_A 323 KANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNV 396 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCE
Confidence 334444444444443 22 2333344 68999998642110 011223356777665 59999999764 579
Q ss_pred EEEEec-cCCHHHHHHHHHHHHHHHhhh
Q 011801 401 FRVCFA-NMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 401 ~Rl~~~-~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+||+++ ..+++++++++++|++++++.
T Consensus 397 iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 397 LRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 999997 459999999999999998753
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=264.95 Aligned_cols=318 Identities=14% Similarity=0.183 Sum_probs=219.6
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~ 159 (477)
.|.+..+..+||+++|++++ .+++++|+|+++|+.+++.+++++|| +++.|+| +.+...+... |.+
T Consensus 70 ~y~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~-G~~ 136 (456)
T 2ez2_A 70 AYAGSENFYHLERTVQELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKN-GAV 136 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHT-TCE
T ss_pred hcccChhHHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHc-CCE
Confidence 46666778999999999986 24799999999999999999999999 8889999 7767777766 999
Q ss_pred EEEEeccCC----C----CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCC-CcccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 160 IVPVHCDIS----N----NFKITREALEAAYERAQEASINIKGLIITNPSN-PLGTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 160 ~~~v~~~~~----~----~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
++.++++.. + +|.+|+++|++++++.. ..++++|++++|+| |||.+++.+++++|+++|+++|++||+|
T Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D 214 (456)
T 2ez2_A 137 FVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD 214 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 999988631 2 37899999999997521 12468999999999 9999999999999999999999999999
Q ss_pred ccccc----------cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc----
Q 011801 231 EIYAA----------TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---- 296 (477)
Q Consensus 231 e~y~~----------~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---- 296 (477)
|+|+. ..+.+..+.++.+... ....++++ |++|..+ +| |.||++++++.+.+.+.....
T Consensus 215 e~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~----~~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
T 2ez2_A 215 ATRCVENAYFIKEQEQGFENKSIAEIVHEMF----SYADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEG 287 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH----TTCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred ccccccccccccccccccCCcchhhhhhhhc----ccCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence 99985 3344433222111111 11234444 7888765 77 889999966656554443321
Q ss_pred ---cCCCchHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccch---hhccCc
Q 011801 297 ---FGLVSSQT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL---LKEKTL 369 (477)
Q Consensus 297 ---~~~vs~~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~---~~~~~~ 369 (477)
+...+... +.++...++ .++ ++..++..+..+.+.+.|.+.|+++..+.+|+++|++++.. .+...+
T Consensus 288 ~~~~~~~~~~~~~a~a~~~~~---~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 361 (456)
T 2ez2_A 288 MPSYGGLAGRDMEAMAIGLRE---AMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEF 361 (456)
T ss_dssp CTTTTTCCHHHHHHHHHHHHH---HTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGC
T ss_pred cccccCcchhHHHHHHHHHHH---HhH---HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhc
Confidence 11223222 221222221 111 12223334445677788887788877778889999988532 122222
Q ss_pred hHHHHHHHHHHHhcCeEEeC-CCCCC----------CCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhh
Q 011801 370 EGEIALWRTIVNDVKLNVSP-GSSFQ----------CTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~p-g~~f~----------~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~ 427 (477)
. ...++..+++++||.+.+ |..|. ....+++|++++. .+++++++++++|++++++.
T Consensus 362 ~-~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 362 P-AQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp H-HHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred c-HHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 1 123466666777998766 44331 1124789999985 48999999999999999763
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=261.18 Aligned_cols=299 Identities=13% Similarity=0.131 Sum_probs=221.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~ 165 (477)
..++++.++++++. . ++++|++|+|+++|++.++.++.++||.|+++.++|.+ +...++.. |.+++.+++
T Consensus 58 ~~~l~~~la~~~~~------~-~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 129 (393)
T 3kgw_A 58 MEEIKQGIQYVFQT------R-NPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRI-GARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHHTC------C-CSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHHhCC------C-CCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHc-CCceEEEeC
Confidence 45777777777751 1 23469999999999999999999999999999988753 24555555 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ +.... ..
T Consensus 130 ~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~---~g~~~-~~ 195 (393)
T 3kgw_A 130 KP--GEHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVAS---LGGVP-IY 195 (393)
T ss_dssp CT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---TTTSC-CC
T ss_pred CC--CCCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCcc---ccCcc-cc
Confidence 64 3478999999999764 7899999999999999999 7789999999999999999997 22211 11
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc-------------------------cCCC
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS-------------------------FGLV 300 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~-------------------------~~~v 300 (477)
. . ..+..+++.|+||.++ ++.++||++++++. .+.+..... .++.
T Consensus 196 ~----~----~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T 3kgw_A 196 M----D----QQGIDIMYSSSQKVLN-APPGISLISFNDKA-KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT 265 (393)
T ss_dssp T----T----TTTCCEEEEESSSTTC-CCSSCEEEEECHHH-HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred h----h----hcCCCEEEecCccccc-CCCceeEEEECHHH-HHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence 1 1 2245578889999874 34459999996554 343332110 1234
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+...+.++...+...+ +..+++..++++++++++.+.|++.|+++..+. .++++|+.++...+ ..++.
T Consensus 266 ~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 337 (393)
T 3kgw_A 266 PVTSLYCLRESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYN------WRDIV 337 (393)
T ss_dssp CHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBC------HHHHH
T ss_pred CHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCC------HHHHH
Confidence 5566666655554321 233677788899999999999999988776332 35778888874322 12577
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEe-ccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCF-ANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
+.+++++||.+.+|..+ ..++++|+++ +.. +++++++++++|++++++.+
T Consensus 338 ~~l~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 338 SYVLDHFSIEISGGLGP--TEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHCEECBCCCGG--GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCEEEeCCccc--CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 77777679999999754 3467999998 654 89999999999999998754
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=266.53 Aligned_cols=342 Identities=15% Similarity=0.155 Sum_probs=235.0
Q ss_pred CccccccccccccccHHHHHHHHHhCCC--CcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPY--ASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
..++|.|+.+.+..+++.+.+.+.+.-. ...-.+.. . .....|....+..++++.++++++ .++++|
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~v 88 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPAS--R-SHRFGWQAEEAVDIARNQIADLVG--------ADPREI 88 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTC--T-TSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCc--c-ccchhHHHHHHHHHHHHHHHHHcC--------CCCCeE
Confidence 4566777776666566667776665421 00000000 0 000001111234678888888876 567899
Q ss_pred EEeCChHHHHHHHHHHhcC----CCCeEEEcCCCccchHHHH---hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLAN----PGDAFLVPSPYYAAFDRDL---SWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~----~Gd~vlv~~P~y~~~~~~~---~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|+|+++|+++++.++.+ +||.|+++.|+|+++...+ ... |++++.++++. ++.+|+++|++++++
T Consensus 89 ~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~--- 162 (423)
T 3lvm_A 89 VFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVTYLAPQR--NGIIDLKELEAAMRD--- 162 (423)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHc-CCEEEEeccCC--CCccCHHHHHHhcCC---
Confidence 9999999999999998874 8999999999999887655 444 99999999874 678899999998864
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+ + .... ..+..+++.|+|
T Consensus 163 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~-~~~~--------~~~~di~~~s~s 224 (423)
T 3lvm_A 163 ---DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---P-IDLS--------QLKVDLMSFSGH 224 (423)
T ss_dssp ---TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---C-CCTT--------TSCCSEEEEEST
T ss_pred ---CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---C-cChh--------hcCCCEEEechH
Confidence 7899999999999999999 78899999999999999999974211 1 1111 224558899999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTK 338 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~ 338 (477)
|.+|.+| +|+++++++.+.. +... ...+..+...+.++...+.. ....+++..++++++++.+.+
T Consensus 225 K~~g~~g--~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~ 298 (423)
T 3lvm_A 225 KIYGPKG--IGALYVRRKPRVR-IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWN 298 (423)
T ss_dssp TTTSCSS--CEEEEECBTTBCC-CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCC--eEEEEEeccccCC-CCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 9888666 9999997653322 1111 11233455566655555542 233467788889999999999
Q ss_pred HHhhC-CCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC-----------------
Q 011801 339 GLEQV-GINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE----------------- 397 (477)
Q Consensus 339 ~L~~~-gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~----------------- 397 (477)
.|+++ |+.+..+.+ +.++++.++.. + ..++.+.+ .+ |.+.+|..|.+..
T Consensus 299 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 368 (423)
T 3lvm_A 299 GIKDIEEVYLNGDLEHGAPNILNVSFNYV-E------GESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALGLNDELA 368 (423)
T ss_dssp HHTTSTTEEEESCSTTBCTTEEEEEETTS-C------HHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHTCCHHHH
T ss_pred HHhcCCCEEEeCCccccCCCeEEEEeCCC-C------HHHHHHHH-hh--heeccCccccCCCccccHHHHHhCCCcccc
Confidence 99988 888776553 23445555321 1 11344444 34 9999998775421
Q ss_pred CCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 398 PGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 398 ~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
++++||+++.. +++++++++++|++++++.+.
T Consensus 369 ~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 369 HSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 47999999854 889999999999999987554
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=260.34 Aligned_cols=297 Identities=9% Similarity=0.097 Sum_probs=221.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEE-EeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIV-MGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~-~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~ 164 (477)
..++++.++++++ .+++.++ +++|+++|+.+++.++.++||.|++++|+|++ +...++.. |++++.++
T Consensus 46 ~~~l~~~la~~~g--------~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 116 (416)
T 3isl_A 46 MNETMEMLRELFQ--------TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERY-GANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHHTT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhc-CCeeEEEe
Confidence 4566777777665 4566665 88999999999999999999999999999987 66666666 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+. .... .
T Consensus 117 ~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---~~~~-~ 182 (416)
T 3isl_A 117 CEW--GTVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATI---GGCE-V 182 (416)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTT---TTSC-C
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccc---cCCC-c
Confidence 874 4578999999999743 7899999999999999999 88899999999999999999973 2211 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------------------------------
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------------------------ 294 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------------------------------ 294 (477)
... ..+..+++.|+||.++ .+.++|+++++++.+ +.+...
T Consensus 183 ~~~--------~~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~ 252 (416)
T 3isl_A 183 KVD--------EWKIDAAIGGTQKCLS-VPSGMAPITYNERVA-DVIAARKKVERGIATQADRAALSGNRPITSNYFDLS 252 (416)
T ss_dssp CTT--------TTTCSEEECCSSSTTC-CCSSEEEEEECHHHH-HHHHTC------------------CCCCSCSTTCHH
T ss_pred chh--------hcCCCEEEecCccccC-CCCCeEEEEECHHHH-HHhhccccccccccccccchhccCCCCCCccccchH
Confidence 111 2245688999999854 445699999966544 333211
Q ss_pred ----------cccCCCchHHHHHHHHhcCChhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeec
Q 011801 295 ----------SSFGLVSSQTQYLLASMLSDDEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDL 360 (477)
Q Consensus 295 ----------~~~~~vs~~~q~~~~~~L~~~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l 360 (477)
...++.+...+.++...+... ... +++..++++++++++.+.|++.|+++..+.+ +.++|+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (416)
T 3isl_A 253 QLEDYWSERRLNHHTEATTMLYALREGVRLV---LEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEI 329 (416)
T ss_dssp HHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEEC
T ss_pred HHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeC
Confidence 012334556666665655432 333 6778888999999999999998988776653 56888888
Q ss_pred cchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHH-HHHHHHHHHHHHhhhh
Q 011801 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDT-LQVALNRIAAFVQQDK 428 (477)
Q Consensus 361 ~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~-l~~~l~~l~~~~~~~~ 428 (477)
+...+ ..++.+.+++++||.+++|.. ...++++|+++.. .++++ +++++++|++++++..
T Consensus 330 ~~~~~------~~~l~~~L~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 330 PGGID------GESVRDMLLAQFGIEIASSFG--PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CTTCC------HHHHHHHHHHHHCEECBCCCS--TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC------HHHHHHHHHHhCCEEEecCCC--CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 74322 125777777777999999863 3346899999943 35555 9999999999998754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=257.23 Aligned_cols=296 Identities=10% Similarity=0.027 Sum_probs=219.1
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
.+..++|++++++++ +..++++|++|+|+++|+.+++.++.+ |.|++++|.|+++ ...++.. |.+++.+
T Consensus 33 ~~~~~l~~~la~~~g------~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~-g~~~~~v 103 (353)
T 2yrr_A 33 RVNRAIQERLAALFD------PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALH-GLDPEVL 103 (353)
T ss_dssp HHHHHHHHHHHHHHC------CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHc-CCceEEE
Confidence 346889999999886 223478899999999999999999876 8999999998875 3444555 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. ++.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+ +...+
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~---~~~~~- 169 (353)
T 2yrr_A 104 DFPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT---LGMLP- 169 (353)
T ss_dssp ECCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT---TTTSC-
T ss_pred eCCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc---ccccc-
Confidence 9864 4678999999998752 6789999999999999999 7788999999999999999996 33222
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHHHH-----------------HhcccCCCchHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGR-----------------KMSSFGLVSSQTQ 305 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~-----------------~~~~~~~vs~~~q 305 (477)
.++... +..+++.|++|.+ |.+| +||++++++.+ +.++ .....++.+...+
T Consensus 170 ~~~~~~--------~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 2yrr_A 170 FSMRAM--------GVDYAFTGSQKCLSAPPG--LAPIAASLEAR-KAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLH 238 (353)
T ss_dssp CCHHHH--------TCSEEECCTTSTTCCCSS--CEEEEECHHHH-HHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHH
T ss_pred cccccc--------CceEEEecCcccccCCCc--eEEEEECHHHH-HHhccCCCccccHHHHhhhhhcCCCCCCCCHHHH
Confidence 233322 2346788999965 4456 79999976544 2222 1112234566666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC--ceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 306 YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN--AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 306 ~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~--~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
.++...+.... +..+++.+++++++++++.+.|++.|+++..+. +++++|++++...+ ..++.+.+.++
T Consensus 239 ~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~- 309 (353)
T 2yrr_A 239 YALLEALDLVL--EEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVD------ADRLVRALYAE- 309 (353)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCC------HHHHHHHHHHT-
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCC------HHHHHHHHHHC-
Confidence 66666654321 222567788889999999999998888877654 56777888863221 12466666655
Q ss_pred CeEEeCCCCCCCCCCCEEEEEe-ccCCHHHHH-HHHHHHHHHHhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCF-ANMDDDTLQ-VALNRIAAFVQQ 426 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~-~~~~~e~l~-~~l~~l~~~~~~ 426 (477)
||.++||..|. .++++|+++ +..++++++ +++++|+++++.
T Consensus 310 gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 310 GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 99999998664 367899999 435888998 999999998753
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=257.21 Aligned_cols=333 Identities=12% Similarity=0.136 Sum_probs=226.1
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
+++|+|+.+.+..+.+.+.+.+.+... .....|+......++++.++++++ .+++|++|
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~~~ 65 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSS------------GQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFLV 65 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTS------------SCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEEE
T ss_pred CceEeeccCCccCCCHHHHHHHHhhcc------------CcccccccchHHHHHHHHHHHHhC---------CCCcEEEe
Confidence 367999887554456667777766411 012345433334566666666653 14469999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH--HhhhC-CcEEEEEeccCCCCcccCHHHHHH-HHHHHH-HhCCCe
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRD--LSWRT-GVQIVPVHCDISNNFKITREALEA-AYERAQ-EASINI 192 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--~~~~~-g~~~~~v~~~~~~~f~i~~~~l~~-~~~~~~-~~~~~~ 192 (477)
+|+++|+.+++.++.++||.|+++.|+|..+... +.... |.+++.++.+ ++.+|+++|++ ++++.. ..+.++
T Consensus 66 ~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 66 PTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp SCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred CCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCc
Confidence 9999999999999999999999999998766544 55444 8899888864 46899999998 775310 112368
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
++|++++|+| ||.+++.+++++|+++|+++|++||+|++|..+.+ .+..... ..+.. ..+ +++.|+||.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~----~~d--~~~~s~sK~- 213 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAE-MTWKA----GVD--ALSFGATKN- 213 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTT-TTGGG----TCC--EEEECCGGG-
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHH-hhhhh----cCC--EEEEecccC-
Confidence 9999999987 99999999999999999999999999999974311 1111111 00000 123 345699998
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhc-ccCCC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CC
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMS-SFGLV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GI 345 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~-~~~~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi 345 (477)
|. ....||++++++.+ +.+.... ..+.. +...+..+...+.+..+ .+..++++++++++.+.|+++ |+
T Consensus 214 g~-~~G~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~g~ 286 (356)
T 1v72_A 214 GV-LAAEAIVLFNTSLA-TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLGGV 286 (356)
T ss_dssp TC-SSCEEEEESSGGGH-HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred CC-cCccEEEEECHHHH-hhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhhCCCc
Confidence 53 23345888755443 3333221 11211 22333334555655333 234556677888899999885 88
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
++..+.+++|+|++++. ++.+.+. ++||.++||. |+ ++++|++++.. +++++++++++|++++
T Consensus 287 ~~~~~~~~~~~~~~~~~-----------~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 287 EVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp EEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred EEccCCCccEEEEEcCH-----------HHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 87767778899998862 3666664 5699999987 54 68999998653 8999999999999987
Q ss_pred hh
Q 011801 425 QQ 426 (477)
Q Consensus 425 ~~ 426 (477)
++
T Consensus 351 ~~ 352 (356)
T 1v72_A 351 DR 352 (356)
T ss_dssp --
T ss_pred Hh
Confidence 65
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=263.46 Aligned_cols=332 Identities=15% Similarity=0.137 Sum_probs=231.0
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccC----CCCCcHHHHHHHHHHHhcccCCCCccCCCcE
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ----DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI 114 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i 114 (477)
+.+.|+.+.+..+++.+.+.+.+.-... . ......|+ ...+..++++++|++++ .++++|
T Consensus 26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~~~v 89 (406)
T 3cai_A 26 GWVHFDAPAGMLIPDSVATTVSTAFRRS-----G---ASTVGAHPSARRSAAVLDAAREAVADLVN--------ADPGGV 89 (406)
T ss_dssp SCEECBGGGCCCCCHHHHHHHHHHHHHC-----C---SSSCSSSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred CeEEEeCCCcCCCCHHHHHHHHHHHHhc-----C---CCCCCccHHHHHHHHHHHHHHHHHHHHhC--------CCCCeE
Confidence 4677877777655555555554421000 0 00001232 12356889999999986 467899
Q ss_pred EEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchHHHHhh----hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSW----RTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~----~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
++|+|+++++.+++.++ .++||.|+++.|+|+.+...+.. . |.+++.+++++ .++.+|+++|++++++
T Consensus 90 ~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~v~~v~~~~-~~~~~d~~~l~~~l~~--- 164 (406)
T 3cai_A 90 VLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY-GAKVKWAEVDI-ETGELPTWQWESLISK--- 164 (406)
T ss_dssp EEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHH-BCEEEEECCCT-TTCCCCGGGHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhc-CCeEEEEecCc-ccCCcCHHHHHHHhCC---
Confidence 99999999999999887 78999999999999987654443 4 99999999863 3467899999988853
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
++++|++++|+||||.+++ +++|.++|+++|++||+||+|+. .... .++... +..+++.|+|
T Consensus 165 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~~-~~~~~~--------~~d~~~~s~~ 226 (406)
T 3cai_A 165 ---STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA---PYRL-LDIRET--------DADVVTVNAH 226 (406)
T ss_dssp ---TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT---TTCC-CCHHHH--------CCSEEEEEGG
T ss_pred ---CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CCCC-CCchhc--------CCCEEEeehh
Confidence 7899999999999999999 78899999999999999999973 2111 222222 3457889999
Q ss_pred cccCCCCceEE-EEEeCCHHHHHHHHHhcc-----------cCCCchHHHHHHHHhcCChh------------hHHHHHH
Q 011801 268 KDMGLPGFRVG-IVYSFNDTVVNCGRKMSS-----------FGLVSSQTQYLLASMLSDDE------------FVDNFLV 323 (477)
Q Consensus 268 K~~g~~G~RvG-~i~~~~~~i~~~~~~~~~-----------~~~vs~~~q~~~~~~L~~~~------------~~~~~~~ 323 (477)
|.+| |+ +| |++++++ +.+.++.... .++.+...+.++...++... .++++++
T Consensus 227 K~~g-~~--~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~ 302 (406)
T 3cai_A 227 AWGG-PP--IGAMVFRDPS-VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQ 302 (406)
T ss_dssp GGTS-CS--CEEEEESCHH-HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHH
T ss_pred hhcC-CC--cCeEEEEehH-HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHH
Confidence 9887 65 99 9998554 4333332211 23345554444444442110 0122567
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCC------CC
Q 011801 324 ETSKRLAKRHHNFTKGLEQV-GINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS------SF 393 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~-gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~------~f 393 (477)
+.+++++++++++.+.|++. |+++..+. ++ ++++.++.. + ..++.+.+. +.||.+++|+ .|
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~-~------~~~~~~~L~-~~gi~v~~g~~~~~~~~~ 373 (406)
T 3cai_A 303 SADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV-P------ADRVVQRLA-DNGILAIANTGSRVLDVL 373 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-C------HHHHHHHHH-HTTEECEECCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-C------HHHHHHHHH-HCCcEEecCChHHHHHHc
Confidence 78888899999999999987 77776553 44 688887631 1 124556554 5699999987 33
Q ss_pred CCC-CCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 394 QCT-EPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 394 ~~~-~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+.. .++++|++++.. +++++++++++|++
T Consensus 374 g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 374 GVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 322 357899999864 79999999999875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=253.36 Aligned_cols=298 Identities=12% Similarity=0.108 Sum_probs=220.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEc-CCCccchH-HHHhhhCCcEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPGDAFLVP-SPYYAAFD-RDLSWRTGVQIV 161 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~~Gd~vlv~-~P~y~~~~-~~~~~~~g~~~~ 161 (477)
...+++++++++++... .+++++|++|+|+++|+.+++.++. ++||.|+++ .|+|+.+. ..++.. |.+++
T Consensus 39 ~~~~~~~~l~~~~~~~~----~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-g~~~~ 113 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAA----ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVD 113 (385)
T ss_dssp HHHHHHHHHHHHTTCCG----GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHHHHHhCCCC----CCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHc-CCceE
Confidence 35678889999987533 3568899999999999999999998 899999888 56776653 455555 99999
Q ss_pred EEec-cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEeccccccccc
Q 011801 162 PVHC-DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVF 238 (477)
Q Consensus 162 ~v~~-~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~ 238 (477)
.+++ + .++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++ |++||+||+|+.
T Consensus 114 ~v~~~~--~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~--- 180 (385)
T 2bkw_A 114 VVRPLK--IGESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI--- 180 (385)
T ss_dssp EECCSS--TTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT---
T ss_pred EEecCC--CCCCCCHHHHHHHHhcC-----CCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECcccc---
Confidence 9998 5 35779999999998741 6889999999999999999 77899999999 999999999973
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHH----------------------HHhc
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCG----------------------RKMS 295 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~----------------------~~~~ 295 (477)
.... .++ . ..+.++++.|+||.++ .+| +||++++++.+.+.+ ....
T Consensus 181 ~~~~-~~~----~----~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (385)
T 2bkw_A 181 GCEE-FEF----D----EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYE 249 (385)
T ss_dssp TTSC-CCT----T----TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHH
T ss_pred CCcc-ccc----c----ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhh
Confidence 2221 121 1 2244578899999764 566 599999765543121 1111
Q ss_pred c-----cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH-hhCCCeEecC-----CceEEEEeeccchh
Q 011801 296 S-----FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGL-EQVGINCLKS-----NAGLFFWMDLRHLL 364 (477)
Q Consensus 296 ~-----~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L-~~~gi~~~~~-----~~g~~~~~~l~~~~ 364 (477)
. +++.+...+.++...++... +..+++..++++++++++.+.| ++.|+++..+ ..++++|++++.
T Consensus 250 ~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 325 (385)
T 2bkw_A 250 AGKGAYFATPPVQLINSLDVALKEIL--EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD-- 325 (385)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC--
Confidence 1 23456666666666664311 1125667788889999999999 8888887653 246789998873
Q ss_pred hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE-ec----cCCHHHHHHHHHHHHHHHhh
Q 011801 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC-FA----NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 365 ~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~-~~----~~~~e~l~~~l~~l~~~~~~ 426 (477)
..++.+.+. ++||.+++|..+. ..++++|++ ++ ..+++++++++++|++++++
T Consensus 326 -------~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 326 -------PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp -------HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 124666665 5699999997653 246799999 76 35899999999999998764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=259.48 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=223.6
Q ss_pred Ccccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...+||++.+. |.+ +++.+.+.+.+.-.. .+ .....|+ ..+..++++++|++++ + ++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~-----~~----~~~~~y~-~~~~~~l~~~la~~~g--------~-~~ 87 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK-----LL----HVSNLYE-NPWQEELAHKLVKHFW--------T-EG 87 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH-----CS----CCCTTBC-CHHHHHHHHHHHHTSS--------S-CE
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHh-----cc----ccCcccC-CHHHHHHHHHHHhhcC--------C-CC
Confidence 45678998776 344 345555555442100 00 0112464 3467899999999874 3 48
Q ss_pred cEEEeCChHHHHHHHHHH---hc---CCC-CeEEEcCCCccchHHHHhhhCCc-------E-----EEEEeccCCCCccc
Q 011801 113 RIVMGGGATGANELIMFC---LA---NPG-DAFLVPSPYYAAFDRDLSWRTGV-------Q-----IVPVHCDISNNFKI 173 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~---l~---~~G-d~vlv~~P~y~~~~~~~~~~~g~-------~-----~~~v~~~~~~~f~i 173 (477)
+|++|+|+++|+.+++.. +. +|| |.|++++|+|+++...+....+. . +..++. .
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 160 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------N 160 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------T
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------c
Confidence 999999999999999865 35 788 99999999999876654433121 1 333332 4
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
|+++|++++++ ++++|++++|+||||.+ .+.+++++|+++|+++|+++|+||+|+++.+.+.. .++... .
T Consensus 161 d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~-~- 231 (375)
T 2eh6_A 161 DIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF-YAYQHF-N- 231 (375)
T ss_dssp CHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGG-T-
T ss_pred hHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-hhhhhc-C-
Confidence 78898887753 78999999999999999 46888999999999999999999999975443322 222221 1
Q ss_pred ccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA 330 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~ 330 (477)
....+ + ||||.+| +|+|+||++++++ +.+.++. .......+++.|.++.+.|+.. + +..++++
T Consensus 232 ---~~~d~-~--s~SK~~~-~g~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~----~~~~~~~ 296 (375)
T 2eh6_A 232 ---LKPDV-I--ALAKGLG-GGVPIGAILAREE-VAQSFTPGSHGSTFGGNPLACRAGTVVVDEV---E----KLLPHVR 296 (375)
T ss_dssp ---CCCSE-E--EECGGGG-TTSCCEEEEEEHH-HHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH---H----HHHHHHH
T ss_pred ---CCCCE-E--EEccccc-CCCCeEEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---H----HHHHHHH
Confidence 11222 2 8889999 7999999999654 4433332 1222235777887777666432 1 4566777
Q ss_pred HHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CC
Q 011801 331 KRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MD 409 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~ 409 (477)
++++++.+.|++++....++ .|+|+|++++.. ..++++.+.+ +||.+.|+ +++++|++++. .+
T Consensus 297 ~~~~~l~~~L~~~~~~~~~~-~g~~~~~~~~~~--------~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~ 360 (375)
T 2eh6_A 297 EVGNYFKEKLKELGKGKVKG-RGLMLGLELERE--------CKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQ 360 (375)
T ss_dssp HHHHHHHHHHHHTTSSEEEE-ETTEEEEECSSC--------CHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHhcCCceE-EEEEEEEEEcCc--------HHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCC
Confidence 88889999998876544443 467899998741 1246666664 69999986 26789999874 59
Q ss_pred HHHHHHHHHHHHHHH
Q 011801 410 DDTLQVALNRIAAFV 424 (477)
Q Consensus 410 ~e~l~~~l~~l~~~~ 424 (477)
++++++++++|++++
T Consensus 361 ~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 361 KEHIDRAISVLREIL 375 (375)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998763
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=259.42 Aligned_cols=356 Identities=11% Similarity=0.038 Sum_probs=211.2
Q ss_pred CCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+.+.+||++.+ .|+++ ++.+.+.+.+. ......|....+..+.++++++++.+..+ .++
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 89 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQ-------------AARLPFVHGSQFSSDVLEEYAGRLARFVG----LPT 89 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHH-------------HHHCCCCCTTTCEEHHHHHHHHHHHHHTT----CTT
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHH-------------HHhcccccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 34568999876 56653 45555555442 11222343334556777777777776544 467
Q ss_pred CcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccchHHHHhhhCCc--------------EEEEEeccCCC
Q 011801 112 DRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAFDRDLSWRTGV--------------QIVPVHCDISN 169 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~~~~~~~~~g~--------------~~~~v~~~~~~ 169 (477)
++|++|+|+++|++.+++++. .+++.|++.+|+|+++...+....+. .+..++.+ +
T Consensus 90 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 167 (430)
T 3i4j_A 90 FRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKP--D 167 (430)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCC--C
T ss_pred CEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCC--c
Confidence 899999999999999998875 44789999999999887554433222 11222221 1
Q ss_pred C---cccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CC-Cccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 170 N---FKITREALEAAYERAQEASINIKGLIITNP-SN-PLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 170 ~---f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~N-PtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
. ...|+++|++++++.. ..+++ +++++| +| ++|. +.+.+++++|.++|+++|++||+||+|.++...+..
T Consensus 168 ~~~~~~~~~~~le~~l~~~~--~~~~~-~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~- 243 (430)
T 3i4j_A 168 PARNGAEDAEGLRALLEREG--PETVA-AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP- 243 (430)
T ss_dssp TTSCHHHHHTHHHHHHHHHC--GGGEE-EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-
T ss_pred ccchhhHHHHHHHHHHHhcC--CCCEE-EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch-
Confidence 1 1235688988887531 01444 455566 56 8886 668888999999999999999999999986555432
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH------hcccCCCchHHHHHHHHhcCChh
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK------MSSFGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~------~~~~~~vs~~~q~~~~~~L~~~~ 316 (477)
.+.. ..+ +..++ +.+|||.+| +| +|+||+++++ .+.+.+.+ ....+..++++|.++.++|+..+
T Consensus 244 ~~~~-~~~--~~~~d----i~t~sK~l~-~G~~r~G~~~~~~-~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 314 (430)
T 3i4j_A 244 LALS-RWS--GVTPD----IAVLGKGLA-AGYAPLAGLLAAP-QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE 314 (430)
T ss_dssp SGGG-GTT--TCCCS----EEEECGGGT-TTSSCCEEEEECH-HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred hhhh-hhc--CCCCc----EEEEccccc-CCccccEEEEECH-HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence 2221 110 00122 337899999 69 9999999954 45555543 22333478899988888886322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCc---hHHHHHHHHHHHhcCeEEeCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTL---EGEIALWRTIVNDVKLNVSPGSS 392 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~---~~e~~l~~~ll~~~gI~v~pg~~ 392 (477)
- +++.++.++..+..++.+.+.+.+. ++....+. |+|+|+++........+ ....++.+.++ +.||.++|+..
T Consensus 315 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~ 391 (430)
T 3i4j_A 315 R-EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT-GLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSG 391 (430)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEC------------CHHHHHHHHH-HTTEECC----
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEeccc
Confidence 1 2223333333334444444444444 34555544 46888887632110000 01134666666 55999999843
Q ss_pred C-CCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 393 F-QCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 393 f-~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+ ....++++||+++. .+++++++++++|++++++
T Consensus 392 ~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 392 AEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp -------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 22346789999984 4999999999999999875
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=254.28 Aligned_cols=338 Identities=12% Similarity=0.066 Sum_probs=219.2
Q ss_pred CCcccccccccc--cccc---HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 36 NPGGVIQLGLAE--NQLC---FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
+...+||++.+. |+++ ++.+.+.+.+.-+. + . .-....|++. ...+++++++++++ .+
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~------~-~-~~~~~~~~~~-~~~~l~~~la~~~~--------~~ 102 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK------L-A-HAAANDFYNI-PQLELAKKLVTYSP--------GN 102 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT------S-C-CCSCSCSCCH-HHHHHHHHHHHHSS--------CS
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhh------C-c-cccccccCCH-HHHHHHHHHHHhCC--------CC
Confidence 345678998776 5552 35566665542110 0 0 0000123321 13455555555543 34
Q ss_pred -CCcEEEeCChHHHHHHHHHHhcC-CCCeEEEcCCCccchHHHHhhhCC-------------cEEEEEeccCC--CCcc-
Q 011801 111 -PDRIVMGGGATGANELIMFCLAN-PGDAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCDIS--NNFK- 172 (477)
Q Consensus 111 -~~~i~~t~G~t~al~~i~~~l~~-~Gd~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~--~~f~- 172 (477)
+++|++|+|+++|++.+++++.. +||.|++++|+|+++........| .+++.++.+.. ..|+
T Consensus 103 ~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 182 (419)
T 2eo5_A 103 FQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHI 182 (419)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCC
T ss_pred cCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccc
Confidence 78999999999999999987643 489999999999876543221111 24666665421 1112
Q ss_pred -----------cCHHHHH-HHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 173 -----------ITREALE-AAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 173 -----------i~~~~l~-~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+|+++|+ +++++.. ...+++ +++++|+ ||||. +.+++++++|.++|+++|++||+||+|.++.+
T Consensus 183 ~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~ 260 (419)
T 2eo5_A 183 NGYENPSELVNRVIEFIEDYIFVNLV-PPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGR 260 (419)
T ss_dssp CTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred cccccchhhHHHHHHHHHHHHHhhcc-CCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCcc
Confidence 3678888 8876310 001454 5667886 57896 66888999999999999999999999998655
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHH-HhcccCCCchHHHHHHHHhcCChh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGR-KMSSFGLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~-~~~~~~~vs~~~q~~~~~~L~~~~ 316 (477)
.+..+ .. +... ....+ .||||.+| +| +|+||++++++.+ .. . .....+.+++++|.++.++|+..
T Consensus 261 ~g~~~-~~-~~~~----~~~d~---~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~- 327 (419)
T 2eo5_A 261 TGKLF-AI-ENFN----TVPDV---ITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIV- 327 (419)
T ss_dssp TSSSS-GG-GGGT----CCCSE---EEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHH-
T ss_pred Ccchh-hH-HhcC----CCCCE---EEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHH-
Confidence 44321 21 1111 11222 28999999 69 9999999977644 32 2 22233346889999888888542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 317 FVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
+ +..++++++++++.+.|+++ +....+. |+|+|++++... .... +++.++ ++||.++|+.
T Consensus 328 --~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~-g~~~~i~~~~~~-----~~~~-~~~~l~-~~Gv~v~~~~----- 387 (419)
T 2eo5_A 328 --K----DLLPHVNEIGKIFAEELQGL-ADDVRGI-GLAWGLEYNEKK-----VRDR-IIGESF-KRGLLLLPAG----- 387 (419)
T ss_dssp --H----HHHHHHHHHHHHHHHHHTTS-SSEEEEE-TTEEEEECSCHH-----HHHH-HHHHHH-HTTEECEEET-----
T ss_pred --H----HHHHHHHHHHHHHHHHHHHh-hhheEee-eEEEEEEEecCc-----cHHH-HHHHHH-HCCCEEecCC-----
Confidence 2 25677888889999999886 4444444 578889884210 1122 566666 5699999873
Q ss_pred CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++++||+++. .+++++++++++|++++++
T Consensus 388 -~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 -RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5789998864 4899999999999999865
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=261.60 Aligned_cols=338 Identities=14% Similarity=0.091 Sum_probs=212.0
Q ss_pred CCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccC----CCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ----DYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.++++.|.|+.+.+..+++.+.+.+.+.-... . + .....|. ......++++++|++++ ++
T Consensus 16 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~-~---~----~~~~~~~~~~~~~~~~~~l~~~la~~~~--------~~ 79 (400)
T 3vax_A 16 PRGSHMTYLDAAATTRVDQRVADIVLHWMTAE-F---G----NAGSRHEYGIRAKRGVERAREYLASTVS--------AE 79 (400)
T ss_dssp ------CCCCCCCCSSSCHHHHHHHHHHHHHH-H---S----CSSCHHHHHHHHHHHHHHHHHHHHHHTT--------CC
T ss_pred cccCCcEEecCCCCCCCCHHHHHHHHHHHHhc-c---C----CCcccchhHHHHHHHHHHHHHHHHHHcC--------CC
Confidence 34667788877776655555555554421000 0 0 0000111 11224667777777765 56
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----CCCC-eEEEcCCCccchHHHHhh--hCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA----NPGD-AFLVPSPYYAAFDRDLSW--RTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~----~~Gd-~vlv~~P~y~~~~~~~~~--~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
+++|++|+|+++|+.+++.++. ++|| .|+++.+.|+.+...+.. ..|++++.++++. ++.+|+++|+++++
T Consensus 80 ~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 80 PDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLR 157 (400)
T ss_dssp GGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCC
T ss_pred CCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcC
Confidence 7899999999999999999987 8999 999999999987655443 1399999999864 67889999998885
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
+ ++++|++++|+||||.+++ +++|+++|+++|++||+||+|+. .... .. + . .. ..+++
T Consensus 158 ~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~---~~~~-~~---~-~----~~-~d~~~ 215 (400)
T 3vax_A 158 P------DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGY---GKVP-GD---L-T----TP-IDMIS 215 (400)
T ss_dssp T------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTT---TTSG-GG---G-G----SC-CSEEE
T ss_pred C------CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhc---CCCC-cC---h-h----hc-CcEEE
Confidence 4 7899999999999999999 78899999999999999999973 2111 11 1 1 11 44788
Q ss_pred ecCCcccCCCCceEEEEE-eCCHHHH---HHHHH---------hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVY-SFNDTVV---NCGRK---------MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLA 330 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~-~~~~~i~---~~~~~---------~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~ 330 (477)
.|+||.+|.+| +|+++ ++++.+. ..+.. ....+..+...+.++...+.. ..+.+++.+++++
T Consensus 216 ~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~ 290 (400)
T 3vax_A 216 ISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQ 290 (400)
T ss_dssp EETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHH
T ss_pred EeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 99999887555 67776 6552111 00111 111233555666666555542 2334677888889
Q ss_pred HHHHHHHHHHhhCCCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----------
Q 011801 331 KRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT----------- 396 (477)
Q Consensus 331 ~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~----------- 396 (477)
++++++.+.|+..|+++..+.+ +.++++.++.. + ..++.+.+. .||.+++|..|...
T Consensus 291 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~ 361 (400)
T 3vax_A 291 DLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-D------AEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAM 361 (400)
T ss_dssp HHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-C------HHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred HHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-C------HHHHHHHHh--cCcEEEecccccCCCCCccHHHHHc
Confidence 9999999999844888776654 34667776631 1 124556655 69999999766431
Q ss_pred --C----CCEEEEEe-ccC-CHHHHHHHHHHHHHHHhh
Q 011801 397 --E----PGWFRVCF-ANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 --~----~~~~Rl~~-~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
. ++++||++ +.. +++++++++++|++++++
T Consensus 362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 48999999 643 789999999999998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=257.29 Aligned_cols=285 Identities=12% Similarity=0.112 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC------C-CCeEEEcCCCccchHH-HHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN------P-GDAFLVPSPYYAAFDR-DLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~------~-Gd~vlv~~P~y~~~~~-~~~~~~g~~ 159 (477)
..++++.++++++ +++|++|+|+++|+..++.++.. + ++.|++++|+|++... .+... |.+
T Consensus 84 ~~~l~~~la~~~g----------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~-g~~ 152 (397)
T 2ord_A 84 QMELAELLSKNTF----------GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT-GQP 152 (397)
T ss_dssp HHHHHHHHHHTTT----------SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS-BCH
T ss_pred HHHHHHHHHHhcC----------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc-CCh
Confidence 3455555555542 57999999999999999988753 5 4789999999976544 44444 655
Q ss_pred ------------EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeE
Q 011801 160 ------------IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIH 226 (477)
Q Consensus 160 ------------~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~ 226 (477)
++.++.+ |+++|++++++ ++++|++++|+||||. +++.+++++|+++|+++|++
T Consensus 153 ~~~~~~~p~~~~~~~~~~~-------d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~ 219 (397)
T 2ord_A 153 KYQKPFEPLVPGFEYFEFN-------NVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDAL 219 (397)
T ss_dssp HHHGGGCSCCTTEEEECTT-------CHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCE
T ss_pred hhccccCCCCCCeeEecCC-------CHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 6666642 78899888753 7999999999999999 99999999999999999999
Q ss_pred EEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHH
Q 011801 227 LVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQT 304 (477)
Q Consensus 227 lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~ 304 (477)
||+||+|+++.+.+.. .++..+ . ...+ + .||||.+| +|+|+||++++++.+ .++. ....+..+++.
T Consensus 220 li~De~~~~~~~~g~~-~~~~~~-~---~~~d-~---~s~sK~~~-~G~r~G~~~~~~~~~--~l~~~~~~~~~~~~~~~ 287 (397)
T 2ord_A 220 LVFDEVQCGMGRTGKL-FAYQKY-G---VVPD-V---LTTAKGLG-GGVPIGAVIVNERAN--VLEPGDHGTTFGGNPLA 287 (397)
T ss_dssp EEEECTTTTTTTTSSS-SHHHHH-T---CCCS-E---EEECGGGG-TTSCCEEEEECSTTC--CCCTTSSCCSSTTCHHH
T ss_pred EEEEecccCCccCccc-hhhhhh-C---CCCC-e---eeeccccC-CCcCeEEEEEchHhc--ccCCCCcCCCCCCCHHH
Confidence 9999999876554432 333222 1 0123 2 28899999 999999999977643 3321 11223467788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
|.++.+.|+..+. ++.+++++++++++.+.|++. ++++. .+..|.|+|++++... ...++++.++
T Consensus 288 ~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~l~~~l~ 356 (397)
T 2ord_A 288 CRAGVTVIKELTK-----EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV------SNREVATKCF 356 (397)
T ss_dssp HHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChH------HHHHHHHHHH
Confidence 8888777754221 234566677777777777665 23321 1234578889887421 1225667666
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+ +||.+.||. ++++|++++. .+++++++++++|++++++
T Consensus 357 ~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 357 E-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp H-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 5 699999872 6789999753 4999999999999998863
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=253.30 Aligned_cols=344 Identities=16% Similarity=0.185 Sum_probs=228.3
Q ss_pred CCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHH
Q 011801 14 GEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQ 93 (477)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ 93 (477)
..+--||+|-- .+.|-.+ -.++|||+.++++++ +.+.+.+.+.. .. ..|.+..+..++++
T Consensus 11 ~~~~~~~~~~~--~~~~~~~---~~~~id~~~~~~~~~-~~v~~a~~~~~-------------~~-~~y~~~~~~~~l~~ 70 (399)
T 2oga_A 11 SSENLYFQGHM--SSRAETP---RVPFLDLKAAYEELR-AETDAAIARVL-------------DS-GRYLLGPELEGFEA 70 (399)
T ss_dssp ------------------CC---CBCSCCHHHHHHHTH-HHHHHHHHHHH-------------HH-TCCSSSHHHHHHHH
T ss_pred cccceeeccCc--ccccccc---cCcccccCcCCCCCC-HHHHHHHHHHH-------------hc-CCCCCchhHHHHHH
Confidence 34445787642 2222121 135799999988776 44555554420 11 25655567899999
Q ss_pred HHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc
Q 011801 94 AVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK 172 (477)
Q Consensus 94 aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~ 172 (477)
++|++++. +++++++|+++|+..++.++ +++||.|+++.|+|+++...++.. |++++.+++++ +++.
T Consensus 71 ~la~~~~~----------~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~ 138 (399)
T 2oga_A 71 EFAAYCET----------DHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSAT-GATPVPVEPHE-DHPT 138 (399)
T ss_dssp HHHHHTTS----------SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCS-SSSS
T ss_pred HHHHHHCC----------CeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHC-CCEEEEEecCC-CCCC
Confidence 99999861 25777888899999999999 899999999999999998888876 99999999874 3578
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCCcccHHHhhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPKFTSVAEVIQ 251 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~~~s~~~~~~ 251 (477)
+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|+++|+++|+||+|+.. .++.. ...
T Consensus 139 ~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~---- 199 (399)
T 2oga_A 139 LDPLLVEKAITP------RTRALL---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR---RIG---- 199 (399)
T ss_dssp BCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE---ETT----
T ss_pred cCHHHHHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe---ecc----
Confidence 999999988753 677766 5789999988 888899999999999999999853 22221 110
Q ss_pred hccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhccc--------------CCCchHHHHHHHHhcCCh
Q 011801 252 EMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--------------GLVSSQTQYLLASMLSDD 315 (477)
Q Consensus 252 ~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--------------~~vs~~~q~~~~~~L~~~ 315 (477)
.. ..+++.|+ ||.+|.+| |+||++++++.+.+.++..... +.++.+.+.++...++..
T Consensus 200 ----~~-~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~ 273 (399)
T 2oga_A 200 ----AG-SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL 273 (399)
T ss_dssp ----CT-TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH
T ss_pred ----cc-cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH
Confidence 00 13778898 79999779 9999999766665555443221 124556655555555432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
++..++.++..+++.+.|.++ |+++. .+..+.++|+.++-... +..++.+.+. +.||.++++...
T Consensus 274 -------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gI~v~~~~~~ 340 (399)
T 2oga_A 274 -------DSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHLD-ARGIDTLTHYPV 340 (399)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHHH-HTTBCCBCSCSS
T ss_pred -------HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHHH-HCCCceecCCCC
Confidence 222334445567788888876 76654 24456666644432111 1124555554 569999875321
Q ss_pred CC--------------CC-------CCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 394 QC--------------TE-------PGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 394 ~~--------------~~-------~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.. .- .+++||++.. .++++++.++++|++++++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 341 PVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred ccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 00 00 2689999965 49999999999999998764
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=249.10 Aligned_cols=297 Identities=11% Similarity=0.048 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEecc
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCD 166 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~ 166 (477)
.+.++++++..+..| .. +++++++++|+++|+..++.++ +||.|+++.|+|+++.. .++.. |++++.+
T Consensus 58 ~~~~~~~~~~a~~~g--~~-~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~-g~~~~~v--- 128 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLG--GD-ENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIV-NAKYFES--- 128 (374)
T ss_dssp HHHHHHHHHHHHHHT--CC-TTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE---
T ss_pred HHHHHHHHHHHHHhC--CC-CcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHc-CcEEEEe---
Confidence 344555555544433 11 3578999999999999999988 99999999999887544 45555 9998877
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeE-EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc-c
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKG-LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF-T 244 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~-vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~-~ 244 (477)
.|+++++++ . .++++ |++++|+||||. +..++++|.++|+++|+++|+||+|+.+. .++.. .
T Consensus 129 ------~d~~~l~~~-~------~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~~~~~~ 192 (374)
T 2aeu_A 129 ------DKVGEILNK-I------DKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARV-RLLFNQP 192 (374)
T ss_dssp ------SCHHHHHTT-C------CTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HHHTTCC
T ss_pred ------CCHHHHHhc-C------CCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccc-ccccccC
Confidence 167777765 2 27899 999999999997 77889999999999999999999998652 11110 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhcCChhh--HHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASMLSDDEF--VDN 320 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L~~~~~--~~~ 320 (477)
+.... +.+++++|+||.+ +|+|+||++++++ +.+.++... .++ .++++.|.++...|...+. ++.
T Consensus 193 ~~~~~--------~~di~~~S~sK~l--~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 261 (374)
T 2aeu_A 193 PALKL--------GADLVVTSTDKLM--EGPRGGLLAGKKE-LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRK 261 (374)
T ss_dssp CHHHH--------TCSEEEEETTSSS--SSCSCEEEEEEHH-HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHH
T ss_pred Ccccc--------CCcEEEecCcccc--cCcceEEEEECHH-HHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 11111 2347889999986 5789999999654 444444332 232 3677888887777764321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC----CCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV----GINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.+..+...+++++.+.+.|... |+.+.. +.+.+|.|.+++.... .....+++..+++++||.+.||..|.
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~~~- 337 (374)
T 2aeu_A 262 AFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAGMP- 337 (374)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCCCC-
Confidence 11111111122256666667653 566544 4555555655543211 11223466677888899999998773
Q ss_pred CCCCEEEEEeccCC--HHHHHHHHHHHHHHHhh
Q 011801 396 TEPGWFRVCFANMD--DDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~--~e~l~~~l~~l~~~~~~ 426 (477)
..++++||+++..+ +++++++++.|++++++
T Consensus 338 ~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 338 GASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 34678999997532 33477778887777765
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=252.34 Aligned_cols=325 Identities=16% Similarity=0.136 Sum_probs=221.9
Q ss_pred CCCcccccccccccccc----HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAENQLC----FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~n~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+.+..+ .+.+.+.+.+...... .....|+ ..-..++++.++++++
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---------~~~~~~~-~~~~~~l~~~la~~~g---------- 92 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT---------LTSRAFH-SDQLGPWYEKVAKLTN---------- 92 (392)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS---------CCCTTSE-ETTHHHHHHHHHHHHT----------
T ss_pred CCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcc---------ccccccC-CHHHHHHHHHHHHhcC----------
Confidence 34556899987765432 4555555544211000 0001132 2235778888887764
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCC----------CCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANP----------GDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~----------Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~ 168 (477)
++++++|+|+++|++.++..+..+ +|.|+++.|+|+++...+....+. .+..++.+
T Consensus 93 ~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (392)
T 3ruy_A 93 KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-- 170 (392)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT--
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc--
Confidence 679999999999999999877543 689999999998765444332121 23444321
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHH-HHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDT-LKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~-l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
|+++|+++++. ++++|++++|+||||.+++.++ +++|.++|+++|+++|+||+|+++.+.+..+ ...
T Consensus 171 -----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~ 238 (392)
T 3ruy_A 171 -----DLEALKAAITP------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACD 238 (392)
T ss_dssp -----CHHHHHHHCCT------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGG
T ss_pred -----cHHHHHHHhcc------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-hhh
Confidence 78999988863 8999999999999999996666 9999999999999999999998765554432 211
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
... ....+ .||||.++ +| +|+||++++++ +.+.+.... ..+..+++.+.++...|+..+ . ++
T Consensus 239 -~~~----~~~d~---~~~SK~l~-gG~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~ 303 (392)
T 3ruy_A 239 -WDN----VTPDM---YILGKALG-GGVFPISCAAANRD-ILGVFEPGSHGSTFGGNPLACAVSIAALEVLE---E--EK 303 (392)
T ss_dssp -GGT----CCCSE---EEECGGGG-TTTSCCEEEEECHH-HHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred -ccC----CCCCE---EEEchhhh-CChhhhEEEEECHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--hh
Confidence 111 11222 37789986 57 99999999554 433333221 223467888888888886432 1 45
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 325 TSKRLAKRHHNFTKGLEQVG---INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~g---i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
..++++++++++.+.|++++ +....+.+ .|+++.++. . ..++++.+. ++||.++||+ ++++
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-~~~~~~~~~--~------~~~l~~~l~-~~gi~v~~~~------~~~i 367 (392)
T 3ruy_A 304 LTERSLQLGEKLVGQLKEIDNPMITEVRGKG-LFIGIELNE--P------ARPYCEQLK-AAGLLCKETH------ENVI 367 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTEEEEEEET-TEEEEEESS--C------SHHHHHHHH-TTTEECCCBT------TTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEeee-eEEEEEEcc--h------HHHHHHHHH-HCCcEEecCC------CCEE
Confidence 67788888899999999875 34444554 466666764 1 124666665 6799999874 6799
Q ss_pred EEEeccC-CHHHHHHHHHHHHHHH
Q 011801 402 RVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 402 Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
|++++.. +++++++++++|++++
T Consensus 368 Ri~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 368 RIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 9996543 8999999999999876
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=245.71 Aligned_cols=295 Identities=14% Similarity=0.150 Sum_probs=201.7
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEeccC
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~~~~ 167 (477)
++.+++++++.+..| ++.+.+.+++|+|+++|+++++.++.++||.|++++|.|.+.. ..+... |.+++.++++.
T Consensus 52 ~~~~~~~~~la~~~g--~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 128 (376)
T 3f0h_A 52 STMLENEKFMLEYAK--APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIH-EIPYVALKLEH 128 (376)
T ss_dssp HHHHHHHHHHHHHHT--CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHT-TCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhC--CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEEeCCC
Confidence 444444444444333 2222244556999999999999999999999999998765543 234444 99999998763
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
++.+|+++|++++. .++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.. ... ..+.
T Consensus 129 --~~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~---~~~-~~~~ 193 (376)
T 3f0h_A 129 --GKKLTKEKLYEYDN------QNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFL---ADP-FNMN 193 (376)
T ss_dssp --TCCCCHHHHHTTTT------SCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTT---TSC-CCHH
T ss_pred --CCCCCHHHHHHhhc------cCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCcccc---Ccc-cccc
Confidence 57899999988653 37899999999999999999 888999999999999999999843 211 1222
Q ss_pred HhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHh--cc-----------------cCCCchHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKM--SS-----------------FGLVSSQTQYL 307 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~--~~-----------------~~~vs~~~q~~ 307 (477)
.. +..+++.|+||.+| .+| +|+++++++. .+.+... .+ ....+...+.+
T Consensus 194 ~~--------~~d~~~~s~~K~l~~~~G--~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (376)
T 3f0h_A 194 EC--------GADVMITGSQKVLACPPG--ISVIVLAPRG-VERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQ 262 (376)
T ss_dssp HH--------TCSEEEEETTTTTCCCSS--CEEEEECHHH-HHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred cc--------CccEEEecCcccccCCCc--eEEEEECHHH-HHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHH
Confidence 11 33478899999998 566 6778885554 3333321 11 11233333233
Q ss_pred HHHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc--eEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 308 LASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQVGINCLKSNA--GLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 308 ~~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~--g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
+...+.. +.+ .+++..++++++++++.+.|++.|+++..+.. +++.+. +...+ ..++.+.+.++.
T Consensus 263 ~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~l~~~l~~~~ 331 (376)
T 3f0h_A 263 INERLKE---IKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH--PTTAN------AYDIFLKLKDEY 331 (376)
T ss_dssp HHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE--ESSSC------HHHHHHHHHHHS
T ss_pred HHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe--CCCCC------HHHHHHHHHHhC
Confidence 3333321 111 35677788888899999999988877665432 233322 21111 125677777766
Q ss_pred CeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 384 KLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 384 gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
||.++||. +...++++|++++. .+++++++++++|++++++
T Consensus 332 gi~v~~g~--~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 332 GIWICPNG--GEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SEECEECC--GGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEecCc--cccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999983 33346799999975 4999999999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=255.83 Aligned_cols=333 Identities=15% Similarity=0.089 Sum_probs=215.9
Q ss_pred ccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCC---------CcHHHHHHHHHHHhcccCCCCc
Q 011801 38 GGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYH---------GLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 38 ~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---------G~~~lr~aia~~~~~~~g~~~~ 108 (477)
.+.+.|+.+.+..+++.+.+.+.+.- .....|+... ...++|+++|++++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-------- 75 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAM-------------KEAWGNPSSSYVAGRKAKDIINTARASLAKMIG-------- 75 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHH-------------HHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHH-------------HHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 45688888777665566666555421 1112233211 13689999999986
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc--------CCCCeEEEcCCCccch-----------------HHHHhhhCCcEEEEE
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA--------NPGDAFLVPSPYYAAF-----------------DRDLSWRTGVQIVPV 163 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~--------~~Gd~vlv~~P~y~~~-----------------~~~~~~~~g~~~~~v 163 (477)
+++++|++|+|+++|+.+++.++. ++||.|+++.|+|+++ ...++.. |.+++.+
T Consensus 76 ~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~-g~~v~~v 154 (432)
T 3a9z_A 76 GKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQ-VAEVTFV 154 (432)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTT-SCEEEEE
T ss_pred CCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 467899999999999999999886 5899999999999875 2222334 8999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC----------eEEEecccc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN----------IHLVCDEIY 233 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~----------~~lI~De~y 233 (477)
+++. .++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++++ ++||+||+|
T Consensus 155 ~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~ 224 (432)
T 3a9z_A 155 PVSK-VNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQ 224 (432)
T ss_dssp CCCT-TTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT
T ss_pred ecCc-ccCCcCHHHHHHhccC------CceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchh
Confidence 9864 2457899999988753 7899999999999999999 566788888998 999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH---------HhcccCCCchHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR---------KMSSFGLVSSQT 304 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~---------~~~~~~~vs~~~ 304 (477)
+.. ... .++... ..+ +++.|+||.+| .|+||++++++.....+. .....++.+...
T Consensus 225 ~~~---~~~-~~~~~~------~~d--~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (432)
T 3a9z_A 225 ALG---KRR-VDVEDL------GVD--FLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPM 289 (432)
T ss_dssp TTT---TSC-CCHHHH------CCS--EEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHH
T ss_pred hhC---Ccc-cChhhc------CCC--EEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHH
Confidence 742 111 233322 223 56889999875 469999997653111111 111123466677
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe--cC-----CceEEEEeeccchhhccCchHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL--KS-----NAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~--~~-----~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+.++.+++.. .+.++++..++++++++++.+.|+++ |+.+. .+ ..+..+++.++... ... .++.
T Consensus 290 ~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~ 361 (432)
T 3a9z_A 290 IAGLGKAADL---VSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----LRG-YMVL 361 (432)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT----CCH-HHHH
T ss_pred HHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC----CcH-HHHH
Confidence 7776666643 23356778888899999999999885 65443 22 12334555555310 011 1233
Q ss_pred HHHHHhcCeEEeCCCCCCCC------------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCT------------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~------------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+ .||.+.+|..|... .++++||+++.. +++++++++++|++++++.+
T Consensus 362 ~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 362 AQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp HHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 322 38888888766431 137999999865 79999999999999987643
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=250.77 Aligned_cols=333 Identities=13% Similarity=0.098 Sum_probs=220.8
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. +.+. .+.+.+.+.+.-.. . ......|++ ....++++.++++++
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~------~---~~~~~~~~~-~~~~~l~~~la~~~~---------- 95 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASK------F---WHTGNGYTN-EPVLRLAKKLIDATF---------- 95 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT------C---SCCCTTSCC-HHHHHHHHHHHHHSS----------
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHh------c---ccccCCcCC-HHHHHHHHHHHhhCC----------
Confidence 3455678988763 4442 45555555442110 0 000112322 224556666666543
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~ 170 (477)
.++|++|+|+++|+++++.++.. +| |.|++++|+|+++...+....+ .++..++.
T Consensus 96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 170 (406)
T 4adb_A 96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY----- 170 (406)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----
Confidence 45999999999999999998764 66 9999999999988655444322 24444443
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
.|+++|+++++. ++++|+++ |+||||.++ +.+++++|+++|+++|++||+||+|+++.+.+..+ +...
T Consensus 171 --~d~~~l~~~l~~------~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~ 240 (406)
T 4adb_A 171 --NDINSASALIDD------STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMH 240 (406)
T ss_dssp --TCHHHHHTTCST------TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHH
T ss_pred --CcHHHHHHHhcC------CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHh
Confidence 368888887753 78888888 999999998 99999999999999999999999999765555432 2221
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
. . ....++ ||||.+| +|+|+||++++++ +.+.+.... .....+++.|.++.+.|+..+. ++..
T Consensus 241 ~-~----~~~d~~---t~sK~~~-~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~ 305 (406)
T 4adb_A 241 Y-G----VTPDLL---TTAKALG-GGFPVGALLATEE-CARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PEML 305 (406)
T ss_dssp H-T----CCCSEE---EECGGGG-TTSCCEEEEECHH-HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HHHH
T ss_pred c-C----CCCCEE---Eechhhc-CCCCeEEEEEcHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cCHH
Confidence 1 1 122232 7799999 9999999999554 444333221 2234677888888877753221 2344
Q ss_pred HHHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 327 KRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
++++++++++.+.|++.+ ........|+++|+.++.... ....++++.+.++ ||.+.|+. ++++|
T Consensus 306 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~-gi~v~~~~------~~~iR 374 (406)
T 4adb_A 306 NGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAAKA-GVMVLIAG------GNVVR 374 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHHHT-TEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHHHC-CcEEeecC------CCeEE
Confidence 556666666766666542 211223346789999875320 1123567777655 99999863 67999
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++++. .+++++++++++|++++++..
T Consensus 375 i~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 375 FAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 97654 389999999999999997654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=253.56 Aligned_cols=327 Identities=14% Similarity=0.092 Sum_probs=218.1
Q ss_pred CCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||++.++ |++ +++.+.+.+.+.-.. .+ .....| +.....+++++++++++ .++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~-----~~----~~~~~~-~~~~~~~l~~~la~~~~--------~~~ 104 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAET-----LM----AMPQTL-PTPMRGEFYRTLTAILP--------PEL 104 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHH-----CC----CCCTTS-CCHHHHHHHHHHHHTSC--------TTE
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHh-----CC----CCcccc-CCHHHHHHHHHHHHhcC--------CCc
Confidence 345678998776 444 345555555442100 00 001123 22245667777776653 357
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchH-HHHhhhCCcE------------EEEEeccCCCCcccCHH
Q 011801 112 DRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFD-RDLSWRTGVQ------------IVPVHCDISNNFKITRE 176 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~-~~~~~~~g~~------------~~~v~~~~~~~f~i~~~ 176 (477)
++|++|+|+++|+.+++.++. .+||.|++++|+|++.. ..+... |.+ +..++. .|++
T Consensus 105 ~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~-------~d~~ 176 (395)
T 1vef_A 105 NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT-WEPKYREPFLPLVEPVEFIPY-------NDVE 176 (395)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTC-CCHHHHGGGCSCSSCEEEECT-------TCHH
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhc-CCcccccccCCCCCCeeEeCC-------CcHH
Confidence 899999999999999998763 57899999999997654 344433 654 333331 3789
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccC
Q 011801 177 ALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC 255 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~ 255 (477)
+|++++++ ++++|+++.++||||.++ +.+++++|.++|+++|++||+||+|+++.+.+.. .++. ... .
T Consensus 177 ~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~-~~~~-~~~---~ 245 (395)
T 1vef_A 177 ALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR-FAFE-HFG---I 245 (395)
T ss_dssp HHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHH-HHT---C
T ss_pred HHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCch-hHhh-hcC---C
Confidence 99888753 788777655578999875 6888999999999999999999999974333332 1221 111 0
Q ss_pred CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 011801 256 NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRH 333 (477)
Q Consensus 256 ~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~ 333 (477)
..+ + + ||||.++ +|+|+||++++++ +.+.+.. .......+.+.|.++...|+..+ . .+..+++++++
T Consensus 246 ~~d-~-~--s~sK~~~-~g~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~---~--~~~~~~~~~~~ 314 (395)
T 1vef_A 246 VPD-I-L--TLAKALG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE---R--TRLWERAAELG 314 (395)
T ss_dssp CCS-E-E--EECGGGG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--HTTHHHHHHHH
T ss_pred CCC-E-E--EEccccc-CCCceEEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHH
Confidence 122 2 2 8899999 5999999999665 4443332 11222367778877777775322 1 23456777888
Q ss_pred HHHHHHHhhCCCeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCH
Q 011801 334 HNFTKGLEQVGINC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDD 410 (477)
Q Consensus 334 ~~l~~~L~~~gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~ 410 (477)
+++.+.|++++.++ ..+..|+|+|++++.. ..++++.+++++||.+.|+ +++++||+++. .++
T Consensus 315 ~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~ 380 (395)
T 1vef_A 315 PWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--------AAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEK 380 (395)
T ss_dssp HHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--------SHHHHHHHHHHHCEECEES------STTEEEECCCTTCCH
T ss_pred HHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--------HHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCH
Confidence 88999998875421 1233567899988741 1246777774669999986 26799999864 489
Q ss_pred HHHHHHHHHHHHHH
Q 011801 411 DTLQVALNRIAAFV 424 (477)
Q Consensus 411 e~l~~~l~~l~~~~ 424 (477)
+++++++++|++++
T Consensus 381 ~~i~~~~~~l~~~l 394 (395)
T 1vef_A 381 EDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=250.79 Aligned_cols=328 Identities=12% Similarity=0.130 Sum_probs=215.3
Q ss_pred cccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
..+-++.++|++++ +.+.+.+.+. . ....|.+..+..++++++|++++ . +..+++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~-------------~-~~~~~~~~~~~~~l~~~la~~~~--------~--~~~i~~ 69 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDN-------------L-ESDIYGNGAVIEDFETKIAKILG--------K--QSAVFF 69 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTT-------------C-BCCBTTBSHHHHHHHHHHHHHHT--------C--SEEEEE
T ss_pred chhhcCCCccccCCCHHHHHHHHhh-------------c-ccCcccCCHHHHHHHHHHHHHhC--------C--CcEEEe
Confidence 34556777888853 4444443331 1 12346656678999999999986 1 233555
Q ss_pred CChHHHHHHHHHHhcCCCCe--EEEcCCCccchHH--HH-hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 118 GGATGANELIMFCLANPGDA--FLVPSPYYAAFDR--DL-SWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~--vlv~~P~y~~~~~--~~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|+++|+.+++.++..+||. |+++.++|..+.. .. ... |.++++++. +++.+|+++|+++ . .++
T Consensus 70 ~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~---~~~~~d~~~l~~~-~------~~~ 138 (359)
T 3pj0_A 70 PSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ-QITPLLLGT---ANQLLTIDDIKSL-R------EPV 138 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHH-CCEEEECSC---TTSCCCHHHHHTC-S------SCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhc-CceEEecCC---cCCCcCHHHHHhc-c------CCc
Confidence 78889999999999888887 5556565543321 12 345 999988875 3568999999876 2 378
Q ss_pred eEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccC
Q 011801 193 KGLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMG 271 (477)
Q Consensus 193 k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g 271 (477)
++|+++||+||+ |.+++.+++++|+++|+++|++||+|++|......... .+...+.. ..+ +++.|+||.++
T Consensus 139 ~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~----~~d--~~~~s~sK~~~ 211 (359)
T 3pj0_A 139 SSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQ-KSAEEICA----LFD--SVYVSFYKGIG 211 (359)
T ss_dssp SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHT-CCHHHHHT----TCS--EEEEESSSTTC
T ss_pred eEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhC-CCHHHhhc----cCC--EEEEeccccCC
Confidence 999999999998 79999999999999999999999999998643211100 12222221 223 45569999988
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhc-ccC-CC--chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMS-SFG-LV--SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN 346 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~-~~~-~v--s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~ 346 (477)
.++ . ||+++++ .+.+.+++.. .++ .. ..+.+.++...+ +... +..+++.++++.+.+.|+++ |++
T Consensus 212 ~~~-g-g~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l------~~~~-~~~~~~~~~~~~l~~~L~~~~g~~ 281 (359)
T 3pj0_A 212 GIA-G-AILAGND-DFVQEAKIWKRRYGGDLISLYPYILSADYYF------EKRI-GKMAEYFEAAKGLAERFNSCSGVK 281 (359)
T ss_dssp CSS-C-EEEEECH-HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHG-GGHHHHHHHHHHHHHHHHTSTTEE
T ss_pred Ccc-e-EEEECCH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHH------HHHH-HHhHHHHHHHHHHHHHHhhCCCce
Confidence 553 3 7777754 4544444321 111 11 222222222222 2222 22344667788899999988 888
Q ss_pred Ee-cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc----CCHHHHHHHHHHHH
Q 011801 347 CL-KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN----MDDDTLQVALNRIA 421 (477)
Q Consensus 347 ~~-~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~----~~~e~l~~~l~~l~ 421 (477)
+. .+..++|+|++++.... ....++.+.+ .++||.++||..|...+.+++|++++. .+.+++++++++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~ 356 (359)
T 3pj0_A 282 TVPEVPVSNMFHVYFENSAD----EIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLE 356 (359)
T ss_dssp EESSSCSSSEEEEEESSCHH----HHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHH
T ss_pred eeccCCcceEEEEEecCccc----hhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHH
Confidence 75 45566788888763211 1122454544 566999999988876556799998862 37899999999998
Q ss_pred HH
Q 011801 422 AF 423 (477)
Q Consensus 422 ~~ 423 (477)
+.
T Consensus 357 ~~ 358 (359)
T 3pj0_A 357 KE 358 (359)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=247.59 Aligned_cols=324 Identities=12% Similarity=0.077 Sum_probs=214.5
Q ss_pred cccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHH
Q 011801 43 LGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122 (477)
Q Consensus 43 l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~ 122 (477)
++++.++...+.+.+.+..... ......|++..+..+|++++|++++. +..++++|+++
T Consensus 15 l~~~~~p~~~~~~~~~~~~~~~-----------~~~~~~y~~~~~~~~l~~~la~~~~~----------~~~i~~~~G~~ 73 (357)
T 3lws_A 15 QISGHGKRNVGVLKTAFAAVAD-----------EMASDQYGTGAIIEPFEQKFADVLGM----------DDAVFFPSGTM 73 (357)
T ss_dssp ESSBSSCCBHHHHHHHHTTSCT-----------TCBCEETTEETTHHHHHHHHHHHHTC----------SEEEEESCHHH
T ss_pred cccCCCCCCHHHHHHHHHHhhc-----------ccCcccccCChHHHHHHHHHHHHhCC----------CcEEEecCcHH
Confidence 4555566666666665554210 01124577667889999999999871 23455577788
Q ss_pred HHHHHHHHhcCCCC--eEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 123 ANELIMFCLANPGD--AFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 123 al~~i~~~l~~~Gd--~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+.+++.++..+|| .|+++.++|..+.. ..... |+++++++. .++.+|+++|+++ .++++|++
T Consensus 74 a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~---~~~~~d~~~l~~~--------~~~~~v~~ 141 (357)
T 3lws_A 74 AQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH-PIETILVGA---ADRLMTLDEIKAL--------PDIACLLL 141 (357)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS-SCEEEECSC---TTSCCCHHHHHTC--------CSCSEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc-CcEEEEecC---CCCCcCHHHHhcC--------cCcceEEE
Confidence 99999999988888 67777776543332 23334 888888874 3457999998876 14889999
Q ss_pred eCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEeccccccc--ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 198 TNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT--VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 198 ~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~--~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
++|+||| |.+++.+++++|+++|+++|++||+||+|... .+.+. +...+.. ..+ +++.|+||.++.++
T Consensus 142 ~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~----~~d--~~~~s~sK~~~~~~ 212 (357)
T 3lws_A 142 ELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEK---TAAEIAG----LFD--SIYISFYKGLGGIA 212 (357)
T ss_dssp ESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CHHHHHT----TSS--EEEEESSSTTCCSS
T ss_pred EcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCC---ChHHHHh----cCC--EEEEeccccCCCCc
Confidence 9999998 99999999999999999999999999998621 11122 2222322 223 34789999994343
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-ccC-C--CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-
Q 011801 275 FRVGIVYSFNDTVVNCGRKMS-SFG-L--VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL- 348 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~-~~~-~--vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~- 348 (477)
. ||++++++ +.+.+.+.. .++ . ...+.+.++...|.+ +.+. .+++.++++.+.+.|+++ |+++.
T Consensus 213 g--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~ 282 (357)
T 3lws_A 213 G--AILAGPAA-FCQTARIWKRRYGGDLISLYPYIVSADYYYEL------RKDR-MGQYYEQAKQLAEQFNALPGVHTTP 282 (357)
T ss_dssp C--EEEEECHH-HHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH------HTTC-HHHHHHHHHHHHHHHHTSTTEEEES
T ss_pred e--EEEEcCHH-HHHHHHHHHHHhcCCcccchHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHhCCCCeecc
Confidence 2 99998554 444443322 121 1 123333333333322 2222 233566778899999988 88874
Q ss_pred cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc----CCHHHHHHHHHHHHHHH
Q 011801 349 KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN----MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 349 ~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~----~~~e~l~~~l~~l~~~~ 424 (477)
.+.+++|+|++++.... ....++.+. +.++||.++||..|. .+.+++|++++. .+++++++++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~-l~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 283 EVPVSNMFHLHFDGQAA----DISPKLEQV-QEETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SSCSSSEEEEEEESCHH----HHHHHHHHH-HHHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred CCCcceEEEEEecCChH----HHHHHHHHH-HHhcCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 46677899999975210 111244444 456699999997665 234599999863 37899999999998764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=245.89 Aligned_cols=281 Identities=16% Similarity=0.169 Sum_probs=197.2
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~ 161 (477)
.+..++++.++++++ . ++.++++++++|+..++.++.++||.|+++.|+|+++...+ +.. |.+++
T Consensus 64 ~~~~~l~~~la~~~g--------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~ 132 (398)
T 2rfv_A 64 PTTDALEKKLAVLER--------G--EAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVR 132 (398)
T ss_dssp HHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEE
T ss_pred hHHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHc-CCEEE
Confidence 356788888888875 2 25556666679999999999999999999999999887765 555 99999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++ |++++++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+...+..
T Consensus 133 ~v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 195 (398)
T 2rfv_A 133 FVDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ- 195 (398)
T ss_dssp EECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 98863 68888888753 7899999999999999998 8899999999999999999998654421
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-ccc--CCCchHHHHHHHHhcCChhh
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSF--GLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~--~~vs~~~q~~~~~~L~~~~~ 317 (477)
.. . .+.++++.|+||.++.||.|+ ||++++++.+...++.. ..+ +..+++.|+++...|+..
T Consensus 196 ---~~-~--------~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 261 (398)
T 2rfv_A 196 ---PL-Q--------LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL-- 261 (398)
T ss_dssp ---GG-G--------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH--
T ss_pred ---ch-h--------hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH--
Confidence 11 1 145688899999999899998 99999766554344332 222 357788888888888753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC---------------CeEecC---CceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVG---------------INCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~g---------------i~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
..++ +++.++.+.+.+.|++.+ +++..+ ..|.+++++++... +....+
T Consensus 262 -~~~~----~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~l 327 (398)
T 2rfv_A 262 -GIRM----ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL---------EAGRRM 327 (398)
T ss_dssp -HHHH----HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH---------HHHHHH
T ss_pred -HHHH----HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH---------HHHHHH
Confidence 2222 233444455556665432 222222 23456666887420 112334
Q ss_pred HHhc---CeEEeCCCCCC----C-----------------CCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011801 380 VNDV---KLNVSPGSSFQ----C-----------------TEPGWFRVCFANM-DDDTLQVALNRIAA 422 (477)
Q Consensus 380 l~~~---gI~v~pg~~f~----~-----------------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~ 422 (477)
+++. |+.+++|+.|. | ..++++|++++.. ++++++.+++.|++
T Consensus 328 ~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 328 INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 4433 88888887652 1 1268999999874 56666666666654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=243.49 Aligned_cols=287 Identities=9% Similarity=0.072 Sum_probs=204.3
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc-hHHHHhhhCCcEEEEEeccCC
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA-FDRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~~~~~~~~~g~~~~~v~~~~~ 168 (477)
++.+.+.+.+.+..| + .++++|++|+|+++|+.+++.++.++ +.+++..|+|.. +...++.. |++++.++.+
T Consensus 43 ~~~~~~~~~la~~~g--~-~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~-g~~~~~v~~~-- 115 (362)
T 3ffr_A 43 EVYKTASDNLKTLLE--L-PSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGEL-GREAYKEEAA-- 115 (362)
T ss_dssp HHHHHHHHHHHHHTT--C-CTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHT-TCEEEEEECC--
T ss_pred HHHHHHHHHHHHHhC--C-CCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHh-CCCeEEEecC--
Confidence 444444444444433 1 14678999999999999999999888 666666667763 23345555 9999999975
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc-CeEEEecccccccccCCCCcccHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK-NIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~-~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.++.+|+++|+ + +.++|+|++++|+||||.+++ +++|.++|+++ |+++|+|++|+.. ..+ ...
T Consensus 116 ~~~~~d~~~l~--~------~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~---~~~-~~~- 179 (362)
T 3ffr_A 116 FGKGFYPADIT--V------PADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLP---YPK-FDW- 179 (362)
T ss_dssp TTCCCCGGGCC--C------CTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTT---SSC-CCT-
T ss_pred CCCCCCHHHHh--c------cCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccC---Ccc-cCh-
Confidence 35788999988 2 348999999999999999999 77788899999 9999999999732 211 110
Q ss_pred HhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhcc-----------------------cCCCchH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMSS-----------------------FGLVSSQ 303 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~~-----------------------~~~vs~~ 303 (477)
. +..+++.|+||.++ .+| +|+++++++.+ +.+..... .++.+..
T Consensus 180 --------~-~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (362)
T 3ffr_A 180 --------T-KIDSVFFSVQKCFGLPAG--LGVWILNDRVI-EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAM 247 (362)
T ss_dssp --------T-SCSEEEEETTSTTCCCSC--CEEEEEEHHHH-HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHH
T ss_pred --------h-HCcEEEEecccccCCCCc--eEEEEECHHHH-HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHH
Confidence 1 13478899999998 777 57777755443 33332221 4456666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----CceEEEEeeccchhhccCchHHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
.+.++...+.... +..+++..++++++++++.+.|+++ |+++..+ ..+.++|+.++. + ..++.+.
T Consensus 248 ~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~ 317 (362)
T 3ffr_A 248 NIFLLGKVTGDML--QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--L------PGEINKI 317 (362)
T ss_dssp HHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--C------HHHHHHH
T ss_pred HHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--C------HHHHHHH
Confidence 6666666654211 1125667778888999999999998 8877652 245678888874 1 1256666
Q ss_pred HHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
+.++ ||.+++|.. +..++++||+++.. +++++++++++|++++
T Consensus 318 l~~~-gi~~~~g~~--~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 318 LEPF-DMAVGAGYG--SKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HGGG-TEEEEECSG--GGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHC-CeEEecCcc--ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6655 999999844 34578999999764 8999999999998864
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=249.40 Aligned_cols=321 Identities=15% Similarity=0.239 Sum_probs=218.1
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC----CCCe---EEEcCCCccchHHHHh
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN----PGDA---FLVPSPYYAAFDRDLS 153 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~----~Gd~---vlv~~P~y~~~~~~~~ 153 (477)
.|.+..+..+|+++++++++ .++|++|+|+++|+.+++.++.+ +||. |+++.+.|..+...+.
T Consensus 71 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~ 140 (467)
T 1ax4_A 71 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 140 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHcC----------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh
Confidence 57666688999999999986 26899999999999999999988 9998 9999777777776777
Q ss_pred hhCCcEEEEEeccC---C-----CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcC
Q 011801 154 WRTGVQIVPVHCDI---S-----NNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 154 ~~~g~~~~~v~~~~---~-----~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~ 224 (477)
.. |.+++.++.+. . .++.+|+++|++++++.. ..++++|++++|+||| |.+++.+++++|+++|++||
T Consensus 141 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 141 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred cc-CCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 66 88888776432 1 134689999999997531 1268999999999999 89999999999999999999
Q ss_pred eEEEecccccc--c--------ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCH-HHHHHHH
Q 011801 225 IHLVCDEIYAA--T--------VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFND-TVVNCGR 292 (477)
Q Consensus 225 ~~lI~De~y~~--~--------~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~-~i~~~~~ 292 (477)
++||+||++.. . .+.+ .++.++..+.....+ +++.|+||.+|++ | |+++++++ .+.+.+.
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~ 289 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKN---ATIKEVIFDMYKYAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIFTLAR 289 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTT---CCHHHHHHHHGGGCS--EEEEETTSTTCCSSC---EEEEESSCHHHHHHHH
T ss_pred CEEEEEchhhhhcchhccccccccCC---Cchhhhhhhhccccc--eEEEeccccCCCCcc---eEEEeCCHHHHHHHHH
Confidence 99999998652 1 1222 233332210000123 4568999999876 4 78888744 4544433
Q ss_pred Hhc-------ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccch--
Q 011801 293 KMS-------SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-- 363 (477)
Q Consensus 293 ~~~-------~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~-- 363 (477)
... .++..+...+.+++..+....- ++.+++ ..++++.+.+.|.+.|+++..+.+|+++|+++...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~----~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (467)
T 1ax4_A 290 QRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLHY----RIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVP 364 (467)
T ss_dssp HHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHHH----HHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCT
T ss_pred hhccccccccccCCccchHHHHHHHHHHHhhh-hhHHHH----HHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhcc
Confidence 221 2222333333322222321100 112222 22456778888877788877788899999994221
Q ss_pred -hhccCchHHHHHHHHHHHhcCeEEeC-CCCC-CC---------CCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhhh
Q 011801 364 -LKEKTLEGEIALWRTIVNDVKLNVSP-GSSF-QC---------TEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 364 -~~~~~~~~e~~l~~~ll~~~gI~v~p-g~~f-~~---------~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.....+. ..+++..++.+.||.+.| |+.| +. ...+++||+++. .+++++++++++|++++++.+
T Consensus 365 ~~~~~~~~-~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 365 QIPGDQFP-AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp TSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ccccCCCC-HHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 1101111 235777776778999999 6432 11 013799999983 589999999999999987643
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=248.38 Aligned_cols=356 Identities=10% Similarity=0.037 Sum_probs=218.9
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||++.+ .+.++ ++.+.+.+.+.-+ ... +....+..+.++++++++.+..+ .+
T Consensus 46 ~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-------------~~~-~~~~~~~~~~~~~la~~l~~~~~----~~ 107 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-------------TLS-YFPMSQSHEPAIKLAEKLNEWLG----GE 107 (452)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-------------TCC-CCCTTSEEHHHHHHHHHHHHHHT----SC
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hcC-CcccccCCHHHHHHHHHHHHhCC----CC
Confidence 445668999876 45553 4556665554211 111 11122344566666666655433 23
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-----C---CCCeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA-----N---PGDAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-----~---~Gd~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (477)
.+ |++|+|+++|++.+++++. . +++.|++.+|+|+++........|. .+..++....-.
T Consensus 108 ~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (452)
T 3n5m_A 108 YV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYR 186 (452)
T ss_dssp EE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTT
T ss_pred ce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcccc
Confidence 44 9999999999999999876 5 7899999999999876443332121 133333211101
Q ss_pred ccc-C---------HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 171 FKI-T---------REALEAAYERAQEASINIKGLIITNP-SNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 171 f~i-~---------~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
+.. | +++|++++++. ...++++|+++.+ +| ||.++ +++.+++|.++|++||++||+||+|.++..
T Consensus 187 ~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 187 MPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp STTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred CccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 111 1 78999888631 1226777777766 79 99766 888899999999999999999999998655
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH--------hcccCCCchHHHHHHH
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK--------MSSFGLVSSQTQYLLA 309 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~--------~~~~~~vs~~~q~~~~ 309 (477)
.+..+ .. +.. +..++ +.+|||.+| .| +|+||+++++ .+.+.+.. ....+..+++++.++.
T Consensus 264 ~g~~~-~~-~~~---~~~~d----i~t~sK~l~-~G~~~ig~~~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 332 (452)
T 3n5m_A 264 TGKAF-GF-MNY---DVKPD----IITMAKGIT-SAYLPLSATAVKR-EIYEAFKGKGEYEFFRHINTFGGNPAACALAL 332 (452)
T ss_dssp TSSSS-GG-GGT---TCCCS----EEEECGGGG-TTSSCCEEEEEEH-HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHH
T ss_pred ccccc-hh-hhc---CCCCC----EEeeccccc-CCCcceEEEEECH-HHHHHHhhccCCCCccccCCCCCCHHHHHHHH
Confidence 55432 11 111 11222 337899998 59 9999999954 45444422 1122346788888888
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhcc-Cc--hHHHHHHHHHHHhcCe
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEK-TL--EGEIALWRTIVNDVKL 385 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~-~~--~~e~~l~~~ll~~~gI 385 (477)
+.|+..+- ++.+++.++..+..++.+.+.+.+++ +....+ .|+|+++++....... .+ ....++++.+++ .||
T Consensus 333 aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv 409 (452)
T 3n5m_A 333 KNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG-KGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGL 409 (452)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCc
Confidence 77763211 11223222222333333433334443 333444 4567788775321111 01 111245666664 599
Q ss_pred EEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+.|+..|....++++||+++.. +++++++++++|++++++
T Consensus 410 ~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 410 IIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp ECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999887666678999987654 999999999999999864
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=249.29 Aligned_cols=331 Identities=13% Similarity=0.106 Sum_probs=215.5
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. ++++ .+.+.+.+.+.-+ ....+.. .+..++++++++.+.+..|
T Consensus 54 ~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~-------------~~~~~~~-~~~~~~~~~l~~~la~~~g------ 113 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALGHCHPALVEALKSQGE-------------TLWHTSN-VFTNEPALRLGRKLIDATF------ 113 (420)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHT-------------TCCCCCT-TSCCHHHHHHHHHHHHHSS------
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHH-------------hcccccC-ccCCHHHHHHHHHHHhhCC------
Confidence 3455688997763 5553 4556665554211 1111110 0123445555555544333
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCCcE------------EEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTGVQ------------IVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g~~------------~~~v~~~~~~~ 170 (477)
+++|++|+|+++|++.++.++.. +| +.|++++|+|+++...+....|.+ +..++.
T Consensus 114 ~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----- 188 (420)
T 2pb2_A 114 AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF----- 188 (420)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-----
Confidence 57999999999999999998765 67 499999999987754432222433 444543
Q ss_pred cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 171 FKITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 171 f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
.|+++|++++++ ++++|+++.++|++|. +++.+++++|.++|+++|++||+||+|.++.+.+..+ +. +.
T Consensus 189 --~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~-~~ 258 (420)
T 2pb2_A 189 --NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AY-MH 258 (420)
T ss_dssp --TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HH-HH
T ss_pred --CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HH-Hh
Confidence 278899888753 7898888877888884 6999999999999999999999999998765544332 21 11
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
.. ..++ ++ ||||.+| +|+|+||++++++ +.+.+.. .......++++|.++.+.|+..+. ++..+
T Consensus 259 ~~---~~~d-ii---t~sK~l~-~G~~iG~~~~~~~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-----~~~~~ 324 (420)
T 2pb2_A 259 YG---VTPD-IL---TSAKALG-GGFPVSAMLTTQE-IASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-----PEVLQ 324 (420)
T ss_dssp HT---CCCS-EE---EECGGGG-TTSCCEEEEECHH-HHTTCC----CCEECCCHHHHHHHHHHHHHHSS-----HHHHH
T ss_pred cC---CCCC-eE---Eeccccc-CCCceEEEEEhHH-HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-----ccHHH
Confidence 11 1223 22 7899999 9999999999665 4433322 112223678888887776653221 12344
Q ss_pred HHHHHHHHHHHHHhhC----C-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEE
Q 011801 328 RLAKRHHNFTKGLEQV----G-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFR 402 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~----g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~R 402 (477)
+++++++++.+.|+++ . +....+ .|+|+|++++.... ....++++.+++ +||.+.|+. ++++|
T Consensus 325 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~----~~~~~l~~~l~~-~Gi~v~~~~------~~~iR 392 (420)
T 2pb2_A 325 GIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGLLIGAELKPKYK----GRARDFLYAGAE-AGVMVLNAG------ADVMR 392 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETTEEEEEECGGGT----TCHHHHHHHHHH-TTEECEESS------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEe-cceEEEEEECCCch----HHHHHHHHHHHH-CCCEEEeCC------CCEEE
Confidence 5555666666666553 2 222333 45788998874210 012356676665 699999873 57899
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++++. .+++++++++++|++++++
T Consensus 393 l~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 393 FAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99764 4999999999999999865
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=244.31 Aligned_cols=334 Identities=13% Similarity=0.085 Sum_probs=214.6
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||++.+ .|+++ .+.+.+.+.+.-+ ... |....+..++++++++++.+..+
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~l~~~la~~~~------ 92 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-------------KLL-HTSNLYYNENIAAAAKNLAKASA------ 92 (395)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-------------TCS-CCCTTSBCHHHHHHHHHHHHHHT------
T ss_pred CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-------------hcc-ccccccCCHHHHHHHHHHHHhcC------
Confidence 345668999877 56664 4556665554211 111 11111223555555555554433
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCCc
Q 011801 111 PDRIVMGGGATGANELIMFCLA-------NPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNNF 171 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~-------~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~f 171 (477)
+++|++|+|+++|++.++.++. .++|.|++.+|+|+++........+ .++..++.+
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN----- 167 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----
Confidence 6899999999999999998764 4579999999999887544332212 344444432
Q ss_pred ccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh
Q 011801 172 KITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250 (477)
Q Consensus 172 ~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~ 250 (477)
|+++|++++++ ++++|++..++|++|.+ .+++++++|.++|++||+++|+||+|.++...+..+ .... .
T Consensus 168 --d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~-~ 237 (395)
T 3nx3_A 168 --DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEH-A 237 (395)
T ss_dssp --CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGG-G
T ss_pred --CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHh-c
Confidence 68899888753 78888887777777776 678889999999999999999999999764444322 1111 1
Q ss_pred hhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 011801 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328 (477)
Q Consensus 251 ~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~ 328 (477)
+....+.||||.+| +|+|+||++++++.+.+.+... ...+..+++++.++.+.|+..+- ++++++.++.
T Consensus 238 -------~~~~d~~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~ 308 (395)
T 3nx3_A 238 -------QILPDIMTSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKL 308 (395)
T ss_dssp -------TCCCSEEEECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred -------CCCCCEEEeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11112348899998 6999999999665425444332 12234678888888777763211 1223333333
Q ss_pred HHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc
Q 011801 329 LAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN 407 (477)
Q Consensus 329 l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~ 407 (477)
.+..++.+.+.+.+.+ +.... ..|+|+|++++.... ..++.+.++ +.||.++|+. ++++|++++.
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~------~~~~~~~l~-~~Gi~v~~~~------~~~iRi~~~~ 374 (395)
T 3nx3_A 309 TPYLEQSLDELINEFDFCKKRK-GLGFMQGLSLDKSVK------VAKVIQKCQ-ENALLLISCG------ENDLRFLPPL 374 (395)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEECTTSC------HHHHHHHHH-HTTEECEEET------TTEEEECCCT
T ss_pred HHHHHHHHHHHHHhCCCeEEEE-eEEEEEEEEeCCcch------HHHHHHHHH-HCCCEEecCC------CCEEEEECCC
Confidence 3333344444444443 33333 345788998875211 224666665 4599999873 6799999765
Q ss_pred C-CHHHHHHHHHHHHHHHhh
Q 011801 408 M-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 408 ~-~~e~l~~~l~~l~~~~~~ 426 (477)
. +++++++++++|++++++
T Consensus 375 ~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 375 ILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 4 999999999999999864
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=241.61 Aligned_cols=346 Identities=11% Similarity=0.047 Sum_probs=218.5
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
..|+|..++|.+++. +.+.+.+.-... . ..+ ......|.......++++.+.+.+.+..| .++++|++++
T Consensus 26 ~~i~l~~~~~~~~~~-v~~a~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~~~~i~~~s 95 (417)
T 3n0l_A 26 EGLEMIASENFTLPE-VMEVMGSILTNK-Y-AEG---YPGKRYYGGCEFVDEIETLAIERCKKLFN----CKFANVQPNS 95 (417)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTBGGGGC-C-CCE---ETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cCeeeecccCCCCHH-HHHHHhhhhhcc-c-ccc---CCCccccccchHHHHHHHHHHHHHHHHhC----CCCcceEecc
Confidence 458888888887544 444444321000 0 000 00011232222334555544444444333 4667788888
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
| ++|+++++.+++++||+|+++.|+|+++.. .+... .+..+++++++ .++.+|+++|++++++. ++++
T Consensus 96 G-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 167 (417)
T 3n0l_A 96 G-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKL 167 (417)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSE
T ss_pred H-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeE
Confidence 8 799999999999999999999999987644 22222 14556666665 56789999999999743 7889
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
|++++|+| |++.+ +++|.++|+++|++||+||+|. +..+.+.....+ ....+++.|+||.+ +
T Consensus 168 v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~----------~~~di~~~s~sK~l--~ 230 (417)
T 3n0l_A 168 IVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF----------PYAHVVSSTTHKTL--R 230 (417)
T ss_dssp EEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT----------TTCSEEEEESSTTT--C
T ss_pred EEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc----------ccceEEEeeCcccc--C
Confidence 98888876 88888 8889999999999999999963 333433221111 12347889999988 7
Q ss_pred CceEEEEEeCCHHHHHHHHHhcccC---CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec-
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSFG---LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK- 349 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~~---~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~- 349 (477)
|.|+||++++++.+.+.+......+ ..+...+.++...+.. ..+..+.+.++++.++++.+.+.|.+.|+++..
T Consensus 231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 308 (417)
T 3n0l_A 231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF--NLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSD 308 (417)
T ss_dssp SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccC
Confidence 8899999997666666555443222 2233333333333322 112334667778888889999999988888765
Q ss_pred CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC----CCCEEEEEecc-----CCHHHHHHHHHHH
Q 011801 350 SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT----EPGWFRVCFAN-----MDDDTLQVALNRI 420 (477)
Q Consensus 350 ~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~----~~~~~Rl~~~~-----~~~e~l~~~l~~l 420 (477)
...+.++|++++... ... +.+..++.++||.++++..+... .+..+|+++.. ++++++++++++|
T Consensus 309 ~~~~~~~~~~~~~~~----~~~--~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l 382 (417)
T 3n0l_A 309 GTDNHLVLMSFLDRE----FSG--KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYI 382 (417)
T ss_dssp SCSSSEEEEECTTSS----SCH--HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCceEEEEEcccCC----CCH--HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHH
Confidence 234568899886321 011 23445566789999876543221 23579999853 3679999999999
Q ss_pred HHHHhhh
Q 011801 421 AAFVQQD 427 (477)
Q Consensus 421 ~~~~~~~ 427 (477)
++++++.
T Consensus 383 ~~~l~~~ 389 (417)
T 3n0l_A 383 ADILDDV 389 (417)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 9999763
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=240.56 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=210.8
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|.+..+..++++++|++++ .+++++|+|+++|+.+++.++ +++||.|+++.|+|+++...++.. |+++
T Consensus 35 ~~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~ 103 (393)
T 1mdo_A 35 ITTGPKNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANP 103 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEE
T ss_pred cCCChHHHHHHHHHHHHhC----------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHC-CCEE
Confidence 3344578999999999996 247999999999999999999 899999999999999998888776 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-cccC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVFS 239 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~~ 239 (477)
+.+++++ +++.+|+++|++++++ ++++|+++ ||||.+.+ +++|.++|+++|+++|+||+|+. ..+.
T Consensus 104 ~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~ 170 (393)
T 1mdo_A 104 VMVDVDR-DTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYK 170 (393)
T ss_dssp EEECBCT-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEET
T ss_pred EEEeccC-CcCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeEC
Confidence 9999874 4578999999988853 78888876 48999887 88889999999999999999984 2333
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC---------------------
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--------------------- 298 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~--------------------- 298 (477)
+. . + . . .++++.||||..+++|.|+||++++++.+.+.++.....+
T Consensus 171 ~~---~---~-~----~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T 1mdo_A 171 GR---H---I-G----A--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLA 237 (393)
T ss_dssp TE---E---T-T----S--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESS
T ss_pred Ce---e---c-C----C--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccc
Confidence 21 1 1 0 1 4578899993333455699999997666655554432211
Q ss_pred -----CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec-C-----CceEEEEeeccchhhcc
Q 011801 299 -----LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK-S-----NAGLFFWMDLRHLLKEK 367 (477)
Q Consensus 299 -----~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~-~-----~~g~~~~~~l~~~~~~~ 367 (477)
.++.+...++...+.. +++..++.++.++.+.+.|.+.++++.. + .+++++|+.++.....
T Consensus 238 ~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 309 (393)
T 1mdo_A 238 PGYKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG- 309 (393)
T ss_dssp CCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS-
T ss_pred cCccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccc-
Confidence 0233333332233322 2334444556677888899888766542 2 3456889998731000
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCC--------------CC-----CCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQ--------------CT-----EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~--------------~~-----~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.. ..++.+.+. +.||.+++|..+. .. ..+++|+++.. .++++++.++++|+++++.+
T Consensus 310 -~~-~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 310 -IT-RDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp -SC-HHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred -cC-HHHHHHHHH-hCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 01 124556555 4699999987541 00 13479999974 49999999999999998764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=244.28 Aligned_cols=298 Identities=19% Similarity=0.199 Sum_probs=213.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
.|.+..+..++|+++|++++. ++.|++++| ++|+++++.++ .++||.|+++.|+|+++...++.. |++
T Consensus 33 ~~~~~~~~~~l~~~la~~~~~---------~~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 101 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHGA---------AHALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAV 101 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTTC---------SEEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred eecCCHHHHHHHHHHHHHhCC---------CeEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 355556789999999999962 256777776 89999999999 899999999999999999888776 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-ccc
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVF 238 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~ 238 (477)
++.++++. ++|.+|+++|++++++ ++++|+ |+||||.+.+ +++|.++|+++|++||+|++|+. ..+
T Consensus 102 ~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~ 168 (388)
T 1b9h_A 102 TVPVDVDA-ATYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARW 168 (388)
T ss_dssp EEEECBCT-TTCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE
T ss_pred EEEEecCC-CcCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCcc
Confidence 99999875 3588999999998853 677666 9999999987 78888999999999999999984 223
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH--HHHHHHhccc--------------CC---
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV--VNCGRKMSSF--------------GL--- 299 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i--~~~~~~~~~~--------------~~--- 299 (477)
.+ ..+.. .+ ++++.||||..+++|.|+||++++++.+ ...+.....+ +.
T Consensus 169 ~~---~~~~~--------~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 236 (388)
T 1b9h_A 169 QG---KRVGE--------LD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMR 236 (388)
T ss_dssp TT---EEGGG--------SS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCB
T ss_pred CC---eeccc--------cc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCC
Confidence 22 12111 12 4678899977777778999999977645 3433322221 11
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec------CCceEEEEeeccchhhccCchHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK------SNAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~------~~~g~~~~~~l~~~~~~~~~~~e 372 (477)
.+.....++...+ + ++++..++++++++++.+.|+++ |+.+.. +.+++++|++++... ..+.
T Consensus 237 ~~~~~~a~~~~~~---~----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 305 (388)
T 1b9h_A 237 LNEFSASVLRAQL---A----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERR 305 (388)
T ss_dssp CBHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHH
T ss_pred cCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccH
Confidence 2322222222222 2 24556667778889999999987 787764 345789999998420 0112
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCC---------------------------CCEEEEEecc-C-CHHHHHHHHHHHHHH
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQCTE---------------------------PGWFRVCFAN-M-DDDTLQVALNRIAAF 423 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~~~---------------------------~~~~Rl~~~~-~-~~e~l~~~l~~l~~~ 423 (477)
.++.+.+. +.||.++++..-.... .+.+|+++.. + ++++++.+++.|+++
T Consensus 306 ~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 306 NALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 24666665 4699998874311000 1369999964 6 899999999999998
Q ss_pred Hhh
Q 011801 424 VQQ 426 (477)
Q Consensus 424 ~~~ 426 (477)
+++
T Consensus 385 ~~~ 387 (388)
T 1b9h_A 385 VAR 387 (388)
T ss_dssp HHH
T ss_pred Hhh
Confidence 864
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=252.32 Aligned_cols=307 Identities=13% Similarity=0.144 Sum_probs=224.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcE--EEeCChHHHHHHHHHHhcCCC--------CeEEEcCCCccchHHH
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRI--VMGGGATGANELIMFCLANPG--------DAFLVPSPYYAAFDRD 151 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i--~~t~G~t~al~~i~~~l~~~G--------d~vlv~~P~y~~~~~~ 151 (477)
|..+.+..++++++++++.+..| ...+++++ ++|+|+++|+..++.++.++| |.|+++.|+|..+...
T Consensus 131 ~~~~p~~~~le~~l~~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~ 208 (514)
T 3mad_A 131 PDLWPSTAKFEAEVVAMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA 208 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH
Confidence 44445667888888888887766 33334788 999999999999999998776 9999999999999999
Q ss_pred HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc
Q 011801 152 LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE 231 (477)
Q Consensus 152 ~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De 231 (477)
++.. |++++.++++. ++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|++||+||
T Consensus 209 ~~~~-G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 209 AQYF-GIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHH-TCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHc-CCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 8887 99999999875 678999999998864 7899999999999999998 7889999999999999999
Q ss_pred cccccccC-----CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc----------
Q 011801 232 IYAATVFS-----SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS---------- 296 (477)
Q Consensus 232 ~y~~~~~~-----~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~---------- 296 (477)
+|+++++. +.....+... ..+..+++.|++|.++ +|.++|++++.++.+.........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~~------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDFR------LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSP 349 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCSTT------STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEES
T ss_pred ccccccchhHHhcCCCCCccccc------CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCC
Confidence 99876431 1100111101 2345678899999874 788999999988765432211110
Q ss_pred --cCCCc---hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCch
Q 011801 297 --FGLVS---SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLE 370 (477)
Q Consensus 297 --~~~vs---~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~ 370 (477)
.+..+ ...+.++...+.. ..+++..+++.++++++.+.|++. |+++..+..+ ++|+..+.. +
T Consensus 350 ~~~gs~~~~~~~a~~aal~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-~----- 417 (514)
T 3mad_A 350 TFAGSRPGALSATAWAAMLSLGE-----EGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-N----- 417 (514)
T ss_dssp SSCSSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS-C-----
T ss_pred ccCCCCchHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-C-----
Confidence 01111 1233333333322 235667777888889999999987 8888766655 777765421 1
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhhh
Q 011801 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 371 ~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~~ 428 (477)
..++.+.+.+ +||.+ +|..| ++++|+++... +++++++++++|++++++.+
T Consensus 418 -~~~l~~~L~~-~Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 418 -IYQVMEEMAG-RGWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp -HHHHHHHHHT-TTCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHh-cCCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1246666654 59988 55433 56899999743 56999999999999997654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=245.39 Aligned_cols=326 Identities=14% Similarity=0.192 Sum_probs=221.3
Q ss_pred ccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCC-CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC
Q 011801 42 QLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQD-YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG 119 (477)
Q Consensus 42 ~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G 119 (477)
+|+.+++.++. +.+.+.+.+. +. ...|++ ..+..++|+++|++++ .++|++|+|
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~-------------~~-~~~y~~~~~~~~~l~~~la~~~~----------~~~v~~~~g 75 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRA-------------LD-SQWLSNGGPLVREFEERVAGLAG----------VRHAVATCN 75 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHH-------------HH-HTCCSSSCHHHHHHHHHHHHHHT----------SSEEEEESC
T ss_pred cccccCCCCCChHHHHHHHHHH-------------Hh-cCCcccCCHHHHHHHHHHHHHhC----------CCeEEEeCC
Confidence 57777777753 4445544442 11 124776 6788999999999996 258999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC
Q 011801 120 ATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN 199 (477)
Q Consensus 120 ~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n 199 (477)
+++|+.+++.++. +||.|+++.|+|+.+...+... |++++.++++. ++|.+|+++|++++++ ++++|+++
T Consensus 76 gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~- 145 (424)
T 2po3_A 76 ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWI-GLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGV- 145 (424)
T ss_dssp HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEE-
T ss_pred HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHc-CCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEE-
Confidence 9999999999985 7899999999999999888877 99999999875 4688999999988753 78888886
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEE
Q 011801 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVG 278 (477)
Q Consensus 200 P~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG 278 (477)
||||...+ +++|+++|+++|++||+||+|+ ++.+++. ++.. ..+ ++++||||..+++|.|+|
T Consensus 146 --~~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~-------~~d--i~~~S~sk~K~l~~~~~G 208 (424)
T 2po3_A 146 --HLWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGS-------LGD--AEVFSFHATKAVNAFEGG 208 (424)
T ss_dssp --CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTS-------SSS--EEEEECCTTSSSCCSSCE
T ss_pred --CCCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECCe---eccc-------ccC--EEEEeCCCCCCccCCCCe
Confidence 48999866 8888999999999999999998 4555432 2111 123 788999966666779999
Q ss_pred EEEeCCHHHHHHHHHhcccCC----------Cc-hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe
Q 011801 279 IVYSFNDTVVNCGRKMSSFGL----------VS-SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN 346 (477)
Q Consensus 279 ~i~~~~~~i~~~~~~~~~~~~----------vs-~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~ 346 (477)
|++++++.+.+.++.....+. .+ .+.+..++..+.. ...+++..++.++.++++.+.|.++ |+.
T Consensus 209 ~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 284 (424)
T 2po3_A 209 AVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVL 284 (424)
T ss_dssp EEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEE
T ss_pred EEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999975666555544322110 00 1122222222221 1224555666677778888889877 777
Q ss_pred Eec-CCce----EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--------------CCCE-------
Q 011801 347 CLK-SNAG----LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--------------EPGW------- 400 (477)
Q Consensus 347 ~~~-~~~g----~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--------------~~~~------- 400 (477)
+.. +.++ ++++++++.... ... ..++.+. +.++||.+++. |... .+++
T Consensus 285 ~~~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~l~~~-L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~ 358 (424)
T 2po3_A 285 VADHDRHGLNNHQYVIVEIDEATT--GIH-RDLVMEV-LKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARV 358 (424)
T ss_dssp ECCGGGGSCCCCCCEEEEECHHHH--SSC-HHHHHHH-HHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTE
T ss_pred ccCCCCCCccccEEEEEEECCccc--hhh-HHHHHHH-HHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCE
Confidence 765 3333 334466663100 001 1245554 45679999872 2210 0122
Q ss_pred EEEEe-ccCCHHHHHHHHHHHHHHHhhhh
Q 011801 401 FRVCF-ANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 401 ~Rl~~-~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+|+++ ...+++++++++++|++++++..
T Consensus 359 l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 359 LSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 66763 33599999999999999986543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=242.38 Aligned_cols=339 Identities=12% Similarity=0.045 Sum_probs=215.6
Q ss_pred Ccccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...+||++.+. +.+ +.+.+.+.+.+.-+. . . ......|++. ...+++++++++++ .+++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~------~-~-~~~~~~~~~~-~~~~l~~~la~~~~--------~~~~ 104 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA------M-S-HVMFGGITHA-PAIELCRKLVAMTP--------QPLE 104 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHH------C-S-CCCCSSEECH-HHHHHHHHHHHHSC--------TTCC
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHh------c-c-cccccccCCH-HHHHHHHHHHHhCC--------CCCC
Confidence 34578887765 444 345555555442100 0 0 0001133321 23567777777764 4688
Q ss_pred cEEEeCChHHHHHHHHHHhc---C----CCCeEEEcCCCccchHHHHhhhC---------------CcEEEEEeccC-CC
Q 011801 113 RIVMGGGATGANELIMFCLA---N----PGDAFLVPSPYYAAFDRDLSWRT---------------GVQIVPVHCDI-SN 169 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~---~----~Gd~vlv~~P~y~~~~~~~~~~~---------------g~~~~~v~~~~-~~ 169 (477)
+|++|+|+++|++++++.+. + |||.|++.+|+|+++........ ++..++++... .+
T Consensus 105 ~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 1s0a_A 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccc
Confidence 99999999999999988653 2 68999999999987654322111 23444443210 12
Q ss_pred Cc-ccCHHHHHHHHHHHHHhCCCeeEEEEeCC--CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 170 NF-KITREALEAAYERAQEASINIKGLIITNP--SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 170 ~f-~i~~~~l~~~~~~~~~~~~~~k~vii~nP--~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.| .+|+++|++++++. ..++++ ++++| +||||. ..+++++++|.++|+++|+++|+||+|.++.+.+..+ .
T Consensus 185 ~~~~~d~~~l~~~l~~~---~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~ 259 (429)
T 1s0a_A 185 EWDERDMVGFARLMAAH---RHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-A 259 (429)
T ss_dssp CCCGGGGHHHHHHHHHH---TTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-G
T ss_pred cchHHHHHHHHHHHHhC---CCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-H
Confidence 34 47899999988742 225554 55667 589996 5578889999999999999999999998754433321 2
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-------cccCCCchHHHHHHHHhcCChhh
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-------SSFGLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-------~~~~~vs~~~q~~~~~~L~~~~~ 317 (477)
.. ... ...+ +.||||.+| +| +|+||++++++ +.+.+... ......++++|.++.++|+..+
T Consensus 260 ~~-~~~---~~~d----~~t~sK~l~-~G~~~iG~~~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~- 328 (429)
T 1s0a_A 260 CE-HAE---IAPD----ILCLGKALT-GGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE- 328 (429)
T ss_dssp GG-GGT---CCCS----EEEECGGGG-TSSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred hh-hcC---CCCC----EEEeccccc-CCCccceEEEeCHH-HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH-
Confidence 11 111 1222 237999998 79 99999999654 44444431 1223357788888777765211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
+ .+..++++++++++.+.|+++ ++....+. |+|+|++++...+ ..++.+.++ ++||.++|+
T Consensus 329 --~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~~~~~~~~~------~~~l~~~l~-~~Gi~v~~~--- 393 (429)
T 1s0a_A 329 --S--GDWQQQVADIEVQLREQLAPARDAEMVADVRVL-GAIGVVETTHPVN------MAALQKFFV-EQGVWIRPF--- 393 (429)
T ss_dssp --T--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE-TTEEEEEESSCBC------HHHHHHHHH-HTTEECCCB---
T ss_pred --h--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-eEEEEEEECCccc------HHHHHHHHH-HCCCEEecc---
Confidence 0 122345556667777777764 34333444 4689999874211 124666666 569999874
Q ss_pred CCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 394 QCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++||+++. .+++++++++++|++++++.
T Consensus 394 ----~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 394 ----GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 2689999764 49999999999999988653
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=243.62 Aligned_cols=307 Identities=13% Similarity=0.139 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhh-----------
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWR----------- 155 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~----------- 155 (477)
.++++.+++++ + .++++|++|+|+++|++.+++.+. ..++.|++.+|+|+++...+...
T Consensus 88 ~~l~~~la~~~----~----~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 88 VDLATRLANIT----P----PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp HHHHHHHHHHS----C----TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred HHHHHHHHHhC----C----CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 44555555543 3 457899999999999999998643 23589999999998765432211
Q ss_pred --CCcEEEEEeccCCCCcc--------cCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhc
Q 011801 156 --TGVQIVPVHCDISNNFK--------ITREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDK 223 (477)
Q Consensus 156 --~g~~~~~v~~~~~~~f~--------i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~ 223 (477)
.|+..++++......|. +|+++|++++++. ...++++ ++++|+ ||||. +.+++++++|.++|++|
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 14444444422111222 4689999888642 1125555 556775 88996 57889999999999999
Q ss_pred CeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--c--ccCC
Q 011801 224 NIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--S--SFGL 299 (477)
Q Consensus 224 ~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~--~~~~ 299 (477)
|++||+||+|.++.+.+.. .... ... ...+ +.||||.+| +|+|+||++++++ +.+.+... . ....
T Consensus 237 ~~~li~DEv~~~~g~~g~~-~~~~-~~~---~~~d----i~s~sK~~~-~G~~ig~~~~~~~-~~~~~~~~~~~~~~t~~ 305 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTM-FACQ-RDG---VTPD----ILTLSKTLG-AGLPLAAIVTSAA-IEERAHELGYLFYTTHV 305 (433)
T ss_dssp TCEEEEECTTTTTTTTSSS-STHH-HHT---CCCS----EEEECHHHH-TTSSCEEEEECHH-HHHHHHHTTCCCCCTTT
T ss_pred CCEEEEeccccCCCcCchH-hHHh-hcC---CCCC----EEEeccccc-CCCCeeEEEEhHH-HHHhhccCCCCCCCCCC
Confidence 9999999999976544432 2221 111 0222 348999999 5999999999654 44444431 1 2233
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh----CC-CeEecCCceEEEEeeccchhhc--cCchHH
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ----VG-INCLKSNAGLFFWMDLRHLLKE--KTLEGE 372 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~----~g-i~~~~~~~g~~~~~~l~~~~~~--~~~~~e 372 (477)
.++++|.++.++|+..+ + ....++++++++.+.+.|++ .+ +....+ .|+|+|++++..... ......
T Consensus 306 ~~~~~~~a~~aal~~~~--~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~ 379 (433)
T 1zod_A 306 SDPLPAAVGLRVLDVVQ--R---DGLVARANVMGDRLRRGLLDLMERFDCIGDVRG-RGLLLGVEIVKDRRTKEPADGLG 379 (433)
T ss_dssp TCHHHHHHHHHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECTTHH
T ss_pred cCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHH
Confidence 57788887777764211 0 11223344444555554543 23 233333 457889988742100 000122
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.++++.++ +.||.+.||..|+ .++++||+++. .+++++++++++|++++++
T Consensus 380 ~~~~~~l~-~~Gv~v~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 380 AKITRECM-NLGLSMNIVQLPG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHH-HTTEECCEECCTT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCeEeccCCCC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 35777776 5699999998775 35799998764 4899999999999998864
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=246.84 Aligned_cols=349 Identities=15% Similarity=0.080 Sum_probs=215.6
Q ss_pred CCCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+.+ .+ +++.+.+.+.+. ......|....|..++++++++++.+..+ ..
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~ 102 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAA-------------AANPAGATILSASNAPAVTLAERLLASFP----GE 102 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHH-------------HHSCSCSCSSSSEEHHHHHHHHHHHHTTT----CT
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHH-------------HHhccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 34556789987755 33 345555555442 11223344345667788888888876643 23
Q ss_pred C-CcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEE--------------EEEeccCCCCccc
Q 011801 111 P-DRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQI--------------VPVHCDISNNFKI 173 (477)
Q Consensus 111 ~-~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~--------------~~v~~~~~~~f~i 173 (477)
. ++|++|+|+++|++.++.++ ..+++.|++.+|+|+++...+....|... ..++.+ +.+..
T Consensus 103 ~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 180 (439)
T 3dxv_A 103 GTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRND 180 (439)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTB
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--ccccc
Confidence 4 79999999999999999874 33567899999999776554433323221 112221 11111
Q ss_pred -----CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 174 -----TREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 174 -----~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
|+++|++++++ ....++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++...+..+ ..
T Consensus 181 ~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~-~~- 256 (439)
T 3dxv_A 181 PTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH-CF- 256 (439)
T ss_dssp TTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS-GG-
T ss_pred ccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HH-
Confidence 68889888841 11236777777777788888765 4459999999999999999999999754444321 11
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVET 325 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~ 325 (477)
+... ..++ + .||||.+| +|+|+||+++++ .+.+.+... ...+ .++++|.++.++|+..+. + +.
T Consensus 257 ~~~~---~~~d-i---~s~sK~~~-~G~riG~~~~~~-~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~----~~ 321 (439)
T 3dxv_A 257 EHEG---FVPD-I---LVLGKGLG-GGLPLSAVIAPA-EILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-D----DL 321 (439)
T ss_dssp GGTT---CCCS-E---EEECGGGG-TTSCCEEEEEEH-HHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-T----TH
T ss_pred HhcC---CCCC-E---EEEcchhc-CCcceEEEEECH-HHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-c----CH
Confidence 1111 1222 2 29999999 799999999954 444433322 2223 677888887777753221 1 12
Q ss_pred HHHHHHHHHHHHHHHh----hCC-CeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 326 SKRLAKRHHNFTKGLE----QVG-INCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 326 ~~~l~~r~~~l~~~L~----~~g-i~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
.++++++++.+.+.|. +.+ +....+ .|.|+|+++...... .......++++.++++ ||.+.||..+ +
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~ 395 (439)
T 3dxv_A 322 PAMAERKGRLLRDGLSELAKRHPLIGDIRG-RGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN----G 395 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT----S
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC----C
Confidence 2233333333444333 343 333333 457888877321000 0111223566777655 9999998532 4
Q ss_pred CEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 399 GWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 399 ~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+++||+++.. +++++++++++|++++++.
T Consensus 396 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 396 NVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7999987654 8999999999999999764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=242.81 Aligned_cols=355 Identities=11% Similarity=0.003 Sum_probs=223.7
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
.+.+.+||++.+ .+.++ .+.+.+.+.+.- .... .|....+..++++++++.+.+..+ .
T Consensus 48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 110 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQA-------------KNLAYYHAYVGHGTEASITLAKMIIDRAP----K 110 (460)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHHSCCCCCTTCCCHHHHHHHHHHHHHSC----T
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHhhCC----C
Confidence 445668999876 45553 355555554421 1111 233334445677777777766533 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhC--------------CcEEEEEeccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRT--------------GVQIVPVHCDI 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~--------------g~~~~~v~~~~ 167 (477)
++++|++|+|+++|++.+++++.. +++.|++.+|+|+++...+.... +...+++|...
T Consensus 111 ~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (460)
T 3gju_A 111 GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYF 190 (460)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGG
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccc
Confidence 578999999999999999988763 56999999999988764433221 22333333211
Q ss_pred -CCCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 -SNNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 -~~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.+++..+ +++|++++++.. ..++++|++..++|++|. +.+.+.+++|.++|++||++||+||+|.++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 268 (460)
T 3gju_A 191 RRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFG 268 (460)
T ss_dssp GCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 1222333 578888776421 125666555544667776 6788889999999999999999999999865
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH---------hcccCCCchHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK---------MSSFGLVSSQTQYL 307 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~---------~~~~~~vs~~~q~~ 307 (477)
..+..+ .. +... ..++ +.+|||.++ .| +|+||++++++ +.+.+.. ....+..++++|.+
T Consensus 269 r~g~~~-~~-~~~~---~~pd----i~t~sK~l~-gG~~~lg~v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 337 (460)
T 3gju_A 269 RLGTMF-GS-DHYG---IKPD----LITIAKGLT-SAYAPLSGVIVADR-VWQVLVQGSDKLGSLGHGWTYSAHPICVAA 337 (460)
T ss_dssp TTSSSC-HH-HHHT---CCCS----EEEECGGGT-TTSSCCEEEEEEHH-HHHHHHHHHHHHCSCSCCCTTTTCHHHHHH
T ss_pred cccccc-hH-hhcC---CCCC----eeeeehhhc-CCCCCeEEEEECHH-HHHHHhcccccccccccCCCCCCCHHHHHH
Confidence 544332 22 2211 1222 337899998 66 89999999554 4444421 12223467888988
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhc-cCc----hHHHHHHHHHHH
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKE-KTL----EGEIALWRTIVN 381 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~-~~~----~~e~~l~~~ll~ 381 (477)
+.++|+..+- ++++++.++..+..++.+.+.+.+.+ +....+ .|+|+++++...... ..+ ....++.+.+++
T Consensus 338 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (460)
T 3gju_A 338 GVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG-DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA 415 (460)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEEEEEEEccCccccccccchHHHHHHHHHHHHH
Confidence 8888863221 22344455555555666666676664 334444 356888887642110 001 112245566665
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.||.++|+. .++++||++.. .+++++++++++|++++++.
T Consensus 416 -~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 416 -SGVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp -TTEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999975 25789999654 49999999999999999763
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=244.21 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=203.1
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----Hhhh
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWR 155 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~ 155 (477)
..|. ..|.+ +++++++++.+..| .+++++++|+++|+.+++. ++++||.|++++|+|+++... ++..
T Consensus 125 ~~Y~-~~g~~-~~~~l~~~la~~~g------~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~ 195 (464)
T 1ibj_A 125 YDYT-RSGNP-TRDALESLLAKLDK------ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRS 195 (464)
T ss_dssp CSBT-TTCCH-HHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred cccc-CCCCH-HHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHc
Confidence 3465 34555 78888888877655 3477888888999998885 789999999999999988753 3444
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|++++.++++ |+++|++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.
T Consensus 196 -G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 196 -GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp -TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred -CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9999988863 68889888753 7999999999999999997 88999999999999999999974
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L 312 (477)
.. .+.++ ..+.++++.|+||.++.+ |+|+||++++++.+.+.+.... ..+.++++.|+++...|
T Consensus 259 g~----~~~~~---------~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al 325 (464)
T 1ibj_A 259 PV----LSRPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 325 (464)
T ss_dssp TT----TCCGG---------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred cc----cCChh---------hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence 21 11111 124678899999998744 8999999998766655555443 22346788888888888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHH----------HHHhhC-CCeEecCC---ceEEEEeeccchhhccCchHHHHHHHH
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFT----------KGLEQV-GINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~----------~~L~~~-gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
.+... .+++..+......+++. ++|+++ ++++..++ .|.++|++++.. +....+.+.
T Consensus 326 ~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~------~~~~~~~~~ 396 (464)
T 1ibj_A 326 KTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV------ALSKHLVET 396 (464)
T ss_dssp TTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH------HHHHHHHHH
T ss_pred hhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH------HHHHHHHHh
Confidence 76432 12222222222222222 233333 34444433 245888888521 111134443
Q ss_pred HHHhcCeEEeCCC------------CCCC---------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 379 IVNDVKLNVSPGS------------SFQC---------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 379 ll~~~gI~v~pg~------------~f~~---------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
+ ...||.+++|. .|.. ..++++|++++. |++++++++|++++++
T Consensus 397 L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 397 T-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp C-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred c-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 3 34689888886 1211 125799999995 8899999999999864
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=237.57 Aligned_cols=281 Identities=14% Similarity=0.117 Sum_probs=187.6
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc-h--HHHHhhhCCc--EEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAA-F--DRDLSWRTGV--QIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~-~--~~~~~~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
++++|+++|+..++.+++++||.|+++.|+|++ + ....... |. +.++++.+. +++.+|+++|++++++.
T Consensus 98 v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~---- 171 (425)
T 3ecd_A 98 VQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALS-GKWFNALQYGVSR-DTMLIDYDQVEALAQQH---- 171 (425)
T ss_dssp CCCSSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH----
T ss_pred eecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhc-ccceeeeecCCCc-ccCccCHHHHHHHHhhc----
Confidence 458888999999999999999999999999987 2 2221122 44 555666553 45889999999999753
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
++++|++++|+||+ ..+ +++|.++|+++|++||+||+|. +..+.+..+.. .. . ..+++.|+||
T Consensus 172 -~~~~v~~~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~----~~----~--~di~~~s~sK 235 (425)
T 3ecd_A 172 -KPSLIIAGFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP----VE----H--AHVVTSTTHK 235 (425)
T ss_dssp -CCSEEEEECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG----GG----T--CSEEEEESSG
T ss_pred -CCcEEEEccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc----hh----c--CcEEEecCCc
Confidence 78999999999964 344 7899999999999999999953 33343332221 11 1 2277899999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHHhcccC---CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSFG---LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI 345 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~---~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi 345 (477)
.+ +|.|+||++++++.+...+......+ ..+...+.++...+.. ..+..+++..++++++++.+.+.|.+.|+
T Consensus 236 ~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 311 (425)
T 3ecd_A 236 TL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLKAGGV 311 (425)
T ss_dssp GG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88 67899999998776666554432221 2233333333322221 11233566777888889999999999998
Q ss_pred eEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEEEEEeccC-----CHHHHHH
Q 011801 346 NCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWFRVCFANM-----DDDTLQV 415 (477)
Q Consensus 346 ~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~~-----~~e~l~~ 415 (477)
++..+ ..++++|+.++.... .. +.+...+.++||.++ ||..+.+..++++|+++... +++++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~ 385 (425)
T 3ecd_A 312 DLVTGGTDNHLLLVDLRPKGL----KG--AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFRE 385 (425)
T ss_dssp EEGGGSCSSSEEEEECGGGTC----CH--HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHH
T ss_pred eeccCCCCceEEEEEeCCCCC----CH--HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHH
Confidence 87754 467889998874211 11 234455567799999 55433333456899996432 4899999
Q ss_pred HHHHHHHHHhhh
Q 011801 416 ALNRIAAFVQQD 427 (477)
Q Consensus 416 ~l~~l~~~~~~~ 427 (477)
++++|++++++.
T Consensus 386 ~~~~l~~~l~~~ 397 (425)
T 3ecd_A 386 VGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999999764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=245.84 Aligned_cols=359 Identities=13% Similarity=0.065 Sum_probs=216.7
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .|.++ ++.+.+++.+. +.....|....+..+.+.++++++.+..+. -.
T Consensus 61 ~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~ 124 (453)
T 4ffc_A 61 ADGNSFIDLGAGIAVTTVGASHPAVAAAIADQ-------------ATHFTHTCFMVTPYEQYVQVAELLNALTPG---DH 124 (453)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHH-------------HHHCSCCTTTTSCCHHHHHHHHHHHHHSSC---SS
T ss_pred CCCCEEEEcCCCcccCcCCCCCHHHHHHHHHH-------------HHhccccccCcCCCHHHHHHHHHHHHhCCC---CC
Confidence 445668999876 56663 45566655542 112233443334566777777777655431 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEecc--CCCCccc
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCD--ISNNFKI 173 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~--~~~~f~i 173 (477)
+++|++|+|+++|++.+++.+. ..++.|++.+|+|+++...+...++. .+..++.. ..+.+..
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL 204 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc
Confidence 5799999999999999997754 24589999999999876544332121 23334432 1122333
Q ss_pred C-HHHHHHHHHHHHHh-CCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHh
Q 011801 174 T-REALEAAYERAQEA-SINIKGLIITNPSNPLG--TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEV 249 (477)
Q Consensus 174 ~-~~~l~~~~~~~~~~-~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~ 249 (477)
+ .+.++..++...+. +.+..++++++|.||+| ...+.+.+++|.++|++||++||+||+|.++...+.. .... .
T Consensus 205 ~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~-~a~~-~ 282 (453)
T 4ffc_A 205 TGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAW-FASE-H 282 (453)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHH-H
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccccc-chhh-h
Confidence 3 23333222221111 12345678888988877 4457888999999999999999999999986554432 2221 1
Q ss_pred hhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 250 IQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 250 ~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
.. ..++ +.||||.+| +|+|+||+++++ .+.+.+... ...+..++++|.++.++|+..+- ++++++.++
T Consensus 283 ~~---~~pd----i~t~sK~~~-~G~~~G~~~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~ 352 (453)
T 4ffc_A 283 EG---IVPD----IVTMAKGIA-GGMPLSAVTGRA-ELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARA 352 (453)
T ss_dssp HT---CCCS----EEEECGGGG-TTSSCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHH
T ss_pred cC---CCcc----hHhhhhhhc-CCcCeEEEEECH-HHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHH
Confidence 11 1122 447999998 599999999954 444433322 22234678899888887763211 112233232
Q ss_pred HHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 328 RLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
.....++.+.+.+.+.+ +.... ..|+|+|+++.... .........++++.+++ +||.+.|+..| .+++|+++
T Consensus 353 ~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~ 426 (453)
T 4ffc_A 353 IEASVTSRLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLP 426 (453)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEEC
Confidence 22333333444444443 33333 34678898885310 00111222356666664 59999998654 35899998
Q ss_pred ccC-CHHHHHHHHHHHHHHHhhh
Q 011801 406 ANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 406 ~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.. +++++++++++|++++++.
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 427 PLVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 754 9999999999999999763
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=246.81 Aligned_cols=301 Identities=14% Similarity=0.146 Sum_probs=219.0
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh----cCCCC-----eEEEcCCCccchHHHHhhh
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGD-----AFLVPSPYYAAFDRDLSWR 155 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l----~~~Gd-----~vlv~~P~y~~~~~~~~~~ 155 (477)
..|..++++++++++.+..| .+. .+++++|+++|+..++.++ .++|| .|+++.|+|+.+...+...
T Consensus 102 ~~g~~~l~~~l~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence 44667888888888887766 222 4678899999999755543 35887 9999999999998888776
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|++++.++++. ++.+|+++|++++.+ ++++|++++| ||||.+. +++++|.++|+++|+++|+||+|+.
T Consensus 177 -G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~ 244 (474)
T 1wyu_B 177 -GYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLN 244 (474)
T ss_dssp -TCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred -CCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhh
Confidence 99999999863 578999999998853 7899999998 6899883 3489999999999999999999986
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-C---ceEEEEEeCCHHHHHHHH-H-----------------
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-G---FRVGIVYSFNDTVVNCGR-K----------------- 293 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G---~RvG~i~~~~~~i~~~~~-~----------------- 293 (477)
..++ ..+.... +..+++.|+||.|+.| | +|+||++++++.+ ..+. .
T Consensus 245 ~~~g---~~~~~~~--------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~-~~l~~~~~~~~g~~~~~~~~~~~ 312 (474)
T 1wyu_B 245 AIMG---WARPGDM--------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA-PYLPVPLVERGEEGFYLDFDRPK 312 (474)
T ss_dssp GTTT---TCCHHHH--------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG-GGCCSCEEEECSSCEEEECCCTT
T ss_pred hhcc---CCCcccC--------CCcEEEEeCccccccCCCCCCCCeEEEEEcHHHH-HhCCCCeeeccCCeeEecccCcc
Confidence 5432 1222221 3457788999999877 4 5999999976543 2221 0
Q ss_pred ----hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE--EEeeccchhhcc
Q 011801 294 ----MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF--FWMDLRHLLKEK 367 (477)
Q Consensus 294 ----~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~--~~~~l~~~~~~~ 367 (477)
...+ ..+...+.++..++.... .+.+++..+++.++++++.+.|++.|+++..+.. .+ +|++++...
T Consensus 313 ~~~~~~~~-~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~~~--- 385 (474)
T 1wyu_B 313 SIGRVRSF-YGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGP-SMHEFVAQPPEGF--- 385 (474)
T ss_dssp CCCCSSST-TSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSS-CCSCEEEBCSTTC---
T ss_pred cCcccccC-cCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCC-cceEEEEEcCCCC---
Confidence 0111 245566666666665322 3446777888889999999999988877633322 23 566663111
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
...++.+.++++ ||.+ |+..|....++++||+++.. +++++++++++|++++++
T Consensus 386 ---~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 386 ---RALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ---CHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ---CHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 123577777755 9985 66666433467899999854 799999999999999875
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=239.76 Aligned_cols=352 Identities=7% Similarity=-0.008 Sum_probs=219.1
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
.+.+.+||++.+ .|.++ .+.+.+.+.+.- .... .|....+..+.++++++++.+..+ .
T Consensus 47 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~ 109 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQM-------------EELPFYNTFFKTTHPAVVELSSLLAEVTP----A 109 (459)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCTTSSSCCHHHHHHHHHHHHHSC----T
T ss_pred CCCCEEEECCCchhcccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----C
Confidence 445668999876 56653 355555554421 1111 233333456777777777776544 4
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhC--------------CcEEEEEeccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRT--------------GVQIVPVHCDI 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~--------------g~~~~~v~~~~ 167 (477)
++++|++|+|+++|++.+++++.. +++.|++.+|+|+++...+.... +...+++|...
T Consensus 110 ~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 189 (459)
T 4a6r_A 110 GFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWY 189 (459)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccc
Confidence 578999999999999999998865 57999999999998765443321 22233333200
Q ss_pred C-CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCC-Cccc-CCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 168 S-NNFKIT--------REALEAAYERAQEASINIKGLIITNPSN-PLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 168 ~-~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~N-PtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
. +.+ +| +++|++++++... .+++ +++++|.| ++|. +.+++++++|.++|++||++||+||+|.++
T Consensus 190 ~~~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 265 (459)
T 4a6r_A 190 KHGKD-MTPDEFGVVAARWLEEKILEIGA--DKVA-AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGF 265 (459)
T ss_dssp HHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cCCcc-cCHHHHHHHHHHHHHHHHHHcCC--CCEE-EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 0 122 34 6788887764211 1444 56666654 5555 558999999999999999999999999986
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH---H--hcccCCCchHHHHHHHHh
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR---K--MSSFGLVSSQTQYLLASM 311 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~---~--~~~~~~vs~~~q~~~~~~ 311 (477)
...+..+ .. +... ..++ +.+|||.++..|+|+||++++++ +.+.+. . ....+..++++|.++.+.
T Consensus 266 gr~G~~~-~~-~~~~---~~pd----i~t~sK~l~gg~~~lg~v~~~~~-i~~~~~~~~~~~~~~t~~~~~~~~aaa~aa 335 (459)
T 4a6r_A 266 GRTGEWF-GH-QHFG---FQPD----LFTAAKGLSSGYLPIGAVFVGKR-VAEGLIAGGDFNHGFTYSGHPVCAAVAHAN 335 (459)
T ss_dssp TTTSSSS-HH-HHHT---CCCS----EEEECGGGGTTSSCCEEEEECHH-HHHHHHHHCTTHHHHHHCSCHHHHHHHHHH
T ss_pred Ccccccc-hH-hhcC---CCCC----eeehhhhhcCCCCCccceeeCHH-HHHHhhcCCCcccCCCCCCCHHHHHHHHHH
Confidence 5555432 22 2211 1222 23789999844499999999554 544443 1 122234788899888888
Q ss_pred cCChhhHHHHHHHHH-HHHHHHHHHHHHHHhhCC-CeEecCCceEEEEeeccchhhcc-----CchHHHHHHHHHHHhcC
Q 011801 312 LSDDEFVDNFLVETS-KRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEK-----TLEGEIALWRTIVNDVK 384 (477)
Q Consensus 312 L~~~~~~~~~~~~~~-~~l~~r~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~-----~~~~e~~l~~~ll~~~g 384 (477)
|+..+- ++++++.+ +.....++.+.+.|.+.+ +....+. |+|+++++....... ......++++.+++ .|
T Consensus 336 l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 412 (459)
T 4a6r_A 336 VAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGV-GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NN 412 (459)
T ss_dssp HHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEE-TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TT
T ss_pred HHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEEEEEecCccccccccchHHHHHHHHHHHHH-CC
Confidence 863221 12233333 333333444545555553 3444444 568888776421110 00112346666665 49
Q ss_pred eEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 385 LNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 385 I~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
|.++|+. +++||++... +++++++++++|++++++.
T Consensus 413 v~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 413 LIMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999862 6899997543 9999999999999998764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=239.74 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhh-CCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWR-TGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~-~g~~~~~v~ 164 (477)
..+++...+++.+..| .++++|++++| ++|+..++.+++++||.|+++.|+|+.+. ..+... .+...++++
T Consensus 75 ~~~~~~~~~~la~~~~----~~~~~v~~~sG-s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 149 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFG----ADYANVQPHSG-SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYG 149 (420)
T ss_dssp HHHHHHHHHHHHHHHT----CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCCceeEecCc-HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEecc
Confidence 4444433344444333 45667767776 78999999999999999999999998743 111222 134566666
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+ .++.+|+++|++++++. ++++|++++|+||+ ..+ +++|.++|+++|++||+||+|....+....+.
T Consensus 150 ~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~ 217 (420)
T 3gbx_A 150 ID--ESGKIDYDEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYP 217 (420)
T ss_dssp EC--TTCSCCHHHHHHHHHHH-----CCSEEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSC
T ss_pred CC--ccCCcCHHHHHHHHHhc-----CCeEEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCC
Confidence 65 46789999999999763 68899999999974 555 88999999999999999999753322111111
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC--HHHHHHHHHhc-c--cCCCchHHHHHHHHhcCChhhHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN--DTVVNCGRKMS-S--FGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~--~~i~~~~~~~~-~--~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
.. . ....+++.|+||.++ |.+.||+++++ +.+...+.... . .+..+...+.++...+... .+
T Consensus 218 ~~---~------~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~ 284 (420)
T 3gbx_A 218 NP---V------PHAHVVTTTTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--ME 284 (420)
T ss_dssp CS---T------TTSSEEEEESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TS
T ss_pred cc---c------ccCCEEEeecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--Hh
Confidence 10 1 123478999999994 55569999977 35555444322 1 1222333333333222111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeC-------CC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP-------GS 391 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p-------g~ 391 (477)
..+++.++++.++++.+.+.|.+.|+++..+ ..++++|++++.... .. +.+...++++||.+.| |.
T Consensus 285 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~l~~~gi~v~~~~~~~~~~~ 358 (420)
T 3gbx_A 285 PEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNL----TG--KEADAALGRANITVNKNSVPNDPKS 358 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC----CH--HHHHHHHHHTTEECEEECCTTCSSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCC----CH--HHHHHHHHHCCcEeccccCCCCccc
Confidence 3356777888889999999999999887653 456788998864211 11 2344556778999998 43
Q ss_pred CCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHhhh
Q 011801 392 SFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~ 427 (477)
.|. +..+|+++.. ++++++++++++|++++++.
T Consensus 359 ~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 359 PFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp TTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCC---CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 332 4569999864 35799999999999999764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=241.98 Aligned_cols=282 Identities=11% Similarity=0.059 Sum_probs=199.8
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc------CCCCeE-EEcCCCccchHHHHh---hhC
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA------NPGDAF-LVPSPYYAAFDRDLS---WRT 156 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~------~~Gd~v-lv~~P~y~~~~~~~~---~~~ 156 (477)
...+++++++++++ .++++|++|+|+++++.+++.++. ++||.+ +++.++|+.+...+. ...
T Consensus 72 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~ 143 (416)
T 1qz9_A 72 LSERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADML 143 (416)
T ss_dssp HHHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHh
Confidence 35677777777765 467899999999999998888876 899975 455567876544322 122
Q ss_pred --CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 157 --GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 157 --g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
|.+++.+++ +++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+
T Consensus 144 ~~g~~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~ 205 (416)
T 1qz9_A 144 QQGYTLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHS 205 (416)
T ss_dssp CSSCEEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCceEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccc
Confidence 888888874 5677777643 7899999999999999999 7889999999999999999997
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-------------------
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM------------------- 294 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~------------------- 294 (477)
++... .++... +..+++.|+||.++ +|.++ |+++++++.+.. ++..
T Consensus 206 ---~g~~~-~~~~~~--------~~d~~~~s~~K~l~-~g~~~~g~l~~~~~~~~~-l~~~~~g~~g~~~~~~~~~~~~~ 271 (416)
T 1qz9_A 206 ---AGAVP-VDLHQA--------GADYAIGCTYKYLN-GGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEP 271 (416)
T ss_dssp ---TTTSC-CCHHHH--------TCSEEEECSSSTTC-CCTTCCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCB
T ss_pred ---ccCcC-CChhhc--------CCCEEEecCcccCC-CCCCCeEEEEECHHHHhc-cCCCccccCccccccCCCCccCC
Confidence 32222 222222 23477899999985 77888 999997654322 2111
Q ss_pred ------cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCC----ceEEEEeec
Q 011801 295 ------SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSN----AGLFFWMDL 360 (477)
Q Consensus 295 ------~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~----~g~~~~~~l 360 (477)
...++.+...+.++...+.... +..+++..++++++++++.+.|.+. |+++..+. .+.++|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 349 (416)
T 1qz9_A 272 SNGIARYLCGTQPITSLAMVECGLDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH 349 (416)
T ss_dssp CSSGGGGCCSCCCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC
T ss_pred CcchHHhcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEec
Confidence 0123345555555555553211 1124566778888889999999886 88877653 356789988
Q ss_pred cchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec--cCCHHHHHHHHHHHHHHHhh
Q 011801 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA--NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 361 ~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~--~~~~e~l~~~l~~l~~~~~~ 426 (477)
+. ..++.+.+. ++||.+... .++++||+++ ..+++++++++++|++++++
T Consensus 350 ~~---------~~~l~~~l~-~~gi~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 350 PE---------GYAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TT---------HHHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC---------HHHHHHHHH-hCCcEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 73 124666655 559987532 3679999997 45999999999999999875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=249.92 Aligned_cols=310 Identities=12% Similarity=0.107 Sum_probs=224.3
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC-----CC---CeEEEcCCCccchHHHHh
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN-----PG---DAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~-----~G---d~vlv~~P~y~~~~~~~~ 153 (477)
|..+.|..++++++++++.+..| ++.+++++++++|+++|+.+++.++.+ +| |.|+++.|+|+.+...+.
T Consensus 99 ~~~~~~~~~l~~~~~~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~ 176 (497)
T 3mc6_A 99 PDVFPAVRKMESEVVSMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY 176 (497)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH
Confidence 44456778899999999888877 223478999999999999999998854 56 899999999999999888
Q ss_pred hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 154 WRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 154 ~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
.. |++++.++++. +++.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|
T Consensus 177 ~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~ 245 (497)
T 3mc6_A 177 YF-GMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCL 245 (497)
T ss_dssp HS-CCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTT
T ss_pred Hc-CCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcc
Confidence 77 99999999875 4688999999998854 7899999999999999988 778889999999999999999
Q ss_pred cccccC--C---CCcc-cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC------CC-
Q 011801 234 AATVFS--S---PKFT-SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG------LV- 300 (477)
Q Consensus 234 ~~~~~~--~---~~~~-s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~------~v- 300 (477)
+++... . .... .+. . . ..+..+++.|++|.++ +|.++|++++.++.+..........+ ..
T Consensus 246 ~~~~~~f~~~~~~~~~~~~~-~-~----~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (497)
T 3mc6_A 246 GSFIVSFMEKAGYKNLPLLD-F-R----VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPT 318 (497)
T ss_dssp THHHHGGGTTTTCCSCCCCS-T-T----STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSS
T ss_pred hhhhhhhhhhhcccCCcccc-c-c----CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCCcC
Confidence 864321 1 0000 110 0 0 2345677889999874 88899999998776543321111111 00
Q ss_pred --c------hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecCCceEEEEeeccchhhccCch
Q 011801 301 --S------SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKSNAGLFFWMDLRHLLKEKTLE 370 (477)
Q Consensus 301 --s------~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~~~g~~~~~~l~~~~~~~~~~ 370 (477)
+ ..+++++...+.... +++..+++.++.+++.+.|.+. |+++..+..+.++++..+..
T Consensus 319 ~~g~~~~~~~~a~~aal~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~------- 386 (497)
T 3mc6_A 319 LAGSRPGAIVVGCWATMVNMGENG-----YIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL------- 386 (497)
T ss_dssp SCSSCBHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT-------
T ss_pred cccCCcchhHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC-------
Confidence 0 234555555554332 4566677778888999999984 88887433334455554421
Q ss_pred HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 371 GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 371 ~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+..++.+.+. +.||.+.++.. +..+|+++...+++++++++++|++++++.+.
T Consensus 387 ~~~~l~~~L~-~~Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 387 NIHELSDRLS-KKGWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp THHHHHHHHH-TTTCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-hCCEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1124556655 55999886643 34689999866999999999999999976543
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-28 Score=242.03 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCCh-HHHHHHHHHHhcCC---CCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGA-TGANELIMFCLANP---GDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~-t~al~~i~~~l~~~---Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
..++++.++++++ +. ++++|++|+|+ ++|+.+++..+..+ ||.|+++.++|... ..++.. | +++.+
T Consensus 50 ~~~l~~~la~~~g------~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~-g-~~~~v 119 (360)
T 1w23_A 50 HEQAQNLLRELLQ------IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLL-G-ETHIA 119 (360)
T ss_dssp HHHHHHHHHHHHT------CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTT-S-EEEEE
T ss_pred HHHHHHHHHHHhC------CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHh-C-CeEEe
Confidence 3466666666665 22 36799999999 99999999998765 56677777777543 334555 9 99999
Q ss_pred eccCCCCcccCHHHHHH-HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 HCDISNNFKITREALEA-AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~-~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+++.+++ .+|++++++ ++. .++|+|++++|+||||.+++ ++. +++|++||+||+|+... .+
T Consensus 120 ~~~~~~~-~~d~~~l~~~~i~------~~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~---~~ 181 (360)
T 1w23_A 120 ASTKANS-YQSIPDFSEFQLN------ENDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILS---RP 181 (360)
T ss_dssp EECGGGT-SCSCCCGGGCCCC------TTEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTS---SC
T ss_pred ecccccC-cCCccchHhhccC------CCCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCC---CC
Confidence 9874333 368888877 663 27999999999999999987 332 27999999999998531 11
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------------cccCCCchHHHHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------------SSFGLVSSQTQYLL 308 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--------------~~~~~vs~~~q~~~ 308 (477)
.++. ..+ ++++|+||.+|++| +||++++++.+ +.+... ..+++.+...+.++
T Consensus 182 -~~~~--------~~d--i~~~s~sK~~~~~G--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (360)
T 1w23_A 182 -LKVN--------QFG--MIYAGAQKNLGPSG--VTVVIVKKDLL-NTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYML 247 (360)
T ss_dssp -CCGG--------GCS--EEEEETTTTTSCTT--CEEEEEEHHHH-CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHH
T ss_pred -cCcc--------cCC--EEEEEcccccCCCC--cEEEEEcHHHH-hhcccCCcchhhhhhhhhccCCCCCCCHHHHHHH
Confidence 1221 112 68899999999666 99999965543 222221 11233455566666
Q ss_pred HHhcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhCC-C-eEe--cC-CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 309 ASMLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQVG-I-NCL--KS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 309 ~~~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~--~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
...+.... +. .+++.+++++++++++.+.|++.+ + .+. +. .+++++|++++... ...++.+.+ .+
T Consensus 248 ~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l-~~ 318 (360)
T 1w23_A 248 RNVLDWIK--DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------LNQQFLAKA-KE 318 (360)
T ss_dssp HHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------HHHHHHHHH-HH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCc------cHHHHHHHH-HH
Confidence 55554211 11 467778888999999999999885 5 543 22 34669999987531 112455554 45
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.||.+.||..+ ++++|++++.. +++++++++++|++++++
T Consensus 319 ~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 319 QGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp TTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 79999998754 57899999864 899999999999998764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=238.24 Aligned_cols=288 Identities=14% Similarity=0.077 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-c-EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-R-IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~-i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
..++++++.+.+.+..| ++++ + +++|+|+++++..++.++++|||.|+++.+.+... ...++.. | +++.+
T Consensus 47 ~~~~~~~~~~~la~~~g----~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g-~~~~v 120 (362)
T 2c0r_A 47 YEAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-G-DTHVA 120 (362)
T ss_dssp HHHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-S-CEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHh-C-CeEEE
Confidence 34556666666665555 3453 6 56789999999999999999999999887664332 3455556 8 88888
Q ss_pred eccCC--CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 164 HCDIS--NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~~--~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
+++.+ .++.+|.++++ + +.++|+|++++|+||||.+++ ++++| +|+++|+|++|+.. ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~--i------~~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~---~~ 181 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQ--L------QDNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDIL---SR 181 (362)
T ss_dssp EECGGGTTCSCCCGGGCC--C------CTTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTT---SS
T ss_pred ecccccccccCCCHHHcc--c------CCCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhcc---CC
Confidence 87632 23334655543 3 237999999999999999754 24444 79999999999842 22
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--------------hcccCCCchHHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--------------MSSFGLVSSQTQYL 307 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--------------~~~~~~vs~~~q~~ 307 (477)
+ .++ . .. .+++.|+||.+|++| +||++++++.+. .+.+ ....++++...|.+
T Consensus 182 ~-~~~----~----~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a 247 (362)
T 2c0r_A 182 P-FDL----N----QF--GLVYAGAQKNLGPSG--VTVVIVREDLVA-ESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYM 247 (362)
T ss_dssp C-CCG----G----GC--SEEEEETTTTTCCSS--CEEEEEEGGGSS-SCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHH
T ss_pred c-cch----h----HC--cEEEEeccccccCcC--cEEEEEcHHHHh-hccccCchHHhHHHHhhccCcCCCchHHHHHH
Confidence 1 221 1 12 367889999999888 999999665432 1111 01234567788888
Q ss_pred HHHhcCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhCC-C-eEec---CCceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 308 LASMLSDDEFVDN-FLVETSKRLAKRHHNFTKGLEQVG-I-NCLK---SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 308 ~~~~L~~~~~~~~-~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~---~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
+..+|+... +. .+++.+++++++++++.+.|++.| + ++.. ..++.++|+.++...+ ..++.+.+ .
T Consensus 248 ~~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L-~ 318 (362)
T 2c0r_A 248 VNEVLKWIE--ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEEL------EKEFVKAS-E 318 (362)
T ss_dssp HHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHH------HHHHHHHH-H
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcch------HHHHHHHH-H
Confidence 887775321 21 467788899999999999999987 6 6642 1234567888874221 12455554 5
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.||.+.||..| .+++|+|++.. ++++++++++.|+++++++
T Consensus 319 ~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 319 QEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 669999988765 35799999864 7999999999999998753
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-27 Score=242.89 Aligned_cols=344 Identities=14% Similarity=0.119 Sum_probs=226.7
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC----cE
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD----RI 114 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~----~i 114 (477)
+.|.|..++|+.+.. +.+.+.+.-.. ...+|. .....|....+..++++++.+++.+.+| .+++ +|
T Consensus 45 ~~i~L~a~e~~~~~~-V~eA~~~~l~~--~~~~g~---p~~~~y~~~~~~~~le~~~~~~~a~~~g----~~~~~~~~~V 114 (483)
T 1rv3_A 45 VGLELIASENFASRA-VLEALGSCLNN--KYSLGY---PGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNV 114 (483)
T ss_dssp SSEECCTTCCCCCHH-HHHHHTSGGGT--CCCCEE---TTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEEC
T ss_pred cCeEEEcCCCCCCHH-HHHHHHHHHhc--cCcccC---CCccccCcchhHHHHHHHHHHHHHHHhC----CCcccCceEE
Confidence 468888888876544 44444332100 000010 0001233333456788777777777766 3443 48
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH--------HhhhCC--cEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD--------LSWRTG--VQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--------~~~~~g--~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
++++|+ +++..++.++++|||+|++++|.|+++... +... | ++.+++++++ .++.+|+++|++++++
T Consensus 115 ~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~-G~~~~~v~~~~~~-~~~~iD~d~le~~i~~ 191 (483)
T 1rv3_A 115 QPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT-SIFFESMAYKVNP-DTGYIDYDRLEENARL 191 (483)
T ss_dssp CCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH-HHHSEEEEECBCT-TTCSBCHHHHHHHHHH
T ss_pred EECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccc-cceEEEEECcccc-CCCcCCHHHHHHHHhh
Confidence 888888 899998999999999999999999877532 2222 4 5566665553 4688999999999974
Q ss_pred HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 185 AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
. ++|+|++ +++||+ .+++ +++|.++|+++|++||+|++|+ +.++.+....++ . ...+++
T Consensus 192 ~-----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~----~------~~div~ 251 (483)
T 1rv3_A 192 F-----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF----E------HCHVVT 251 (483)
T ss_dssp H-----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG----G------TCSEEE
T ss_pred c-----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC----C------CCcEEE
Confidence 3 7899888 899999 8888 8889999999999999999986 333322211111 1 223678
Q ss_pred ecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHh-cc--cCCCchHHHHHHHHhcCChhhHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKM-SS--FGLVSSQTQYLLASMLSDDEFVDNFLVETS 326 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~-~~--~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~ 326 (477)
.|+||.+ .|.|.||++++++ .+....... .. .++.+.....+++..+.... +..+++..
T Consensus 252 ~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~~~~~~~~ 327 (483)
T 1rv3_A 252 TTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--TPEFKEYQ 327 (483)
T ss_dssp EESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--SHHHHHHH
T ss_pred ecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--ChhHHHHH
Confidence 9999987 6889999999764 122222221 11 12233333333333332110 12246677
Q ss_pred HHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEE
Q 011801 327 KRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWF 401 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~ 401 (477)
+++.++++.+.+.|.+.|+++..+. .+.++|++++... ...+ ++ ...+++.||.+. ||..+. -+++++
T Consensus 328 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g----~~~~-~~-~~~L~~~gI~v~~~~~pg~~~~-~~~~~i 400 (483)
T 1rv3_A 328 RQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG----TDGG-RA-EKVLEACSIACNKNTCPGDKSA-LRPSGL 400 (483)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT----CCHH-HH-HHHHHHTTEECEEECCSSCSCT-TSCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCC----CCHH-HH-HHHHHhCCcEEecCCCCCCCcC-CCCceE
Confidence 7888899999999999999887653 3468899987421 1111 23 445677899999 987422 246799
Q ss_pred EEEeccC-C----HHHHHHHHHHHHHHHhh
Q 011801 402 RVCFANM-D----DDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~~-~----~e~l~~~l~~l~~~~~~ 426 (477)
||+++.. + ++++++++++|+++++.
T Consensus 401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9999754 4 89999999999999875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=229.55 Aligned_cols=285 Identities=16% Similarity=0.176 Sum_probs=196.4
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRT 156 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~ 156 (477)
.|++ .+..++++++|++++ . ++.|++++| ++|+.+++.++.++||.|+++.|+|++.... ++..
T Consensus 48 ~~~~-~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~- 115 (386)
T 1cs1_A 48 RRGN-PTRDVVQRALAELEG--------G-AGAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG- 115 (386)
T ss_dssp TTCC-HHHHHHHHHHHHHHT--------C-SEEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT-
T ss_pred CCCC-ccHHHHHHHHHHHhC--------C-CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhc-
Confidence 3443 357899999999997 2 256777666 8999999999999999999999999975443 2444
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT 236 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~ 236 (477)
|.+++.++.+ |+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+++
T Consensus 116 g~~~~~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 116 CYRVLFVDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp SCEEEEECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCEEEEeCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 8999888753 78999998864 7899999999999999998 888999999999999999999865
Q ss_pred ccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-ccc-CCCchHHHHHHHHhcC
Q 011801 237 VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSF-GLVSSQTQYLLASMLS 313 (477)
Q Consensus 237 ~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~-~~vs~~~q~~~~~~L~ 313 (477)
.+.. +. . .+.++++.|+||.+|.+|.|+ ||++++++.+.+.+... ..+ +..++..++++...+.
T Consensus 180 ~~~~----~~-~--------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 180 ALQN----PL-A--------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp TTCC----GG-G--------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred ccCC----cc-c--------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 4321 11 1 145688999999999899997 99999775554444433 222 3356677776655554
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-Ce-EecC----------------CceEEEEeeccchhhccCchHHHHH
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-IN-CLKS----------------NAGLFFWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~-~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l 375 (477)
. +....+.+.++.+.+.+.|+++. +. +..+ ..|.++.+.++.. . +.
T Consensus 247 ~-------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~ 310 (386)
T 1cs1_A 247 T-------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-------E--QT 310 (386)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-------H--HH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-------H--HH
Confidence 3 23334455566677777776652 21 1111 1244666666531 1 12
Q ss_pred HHHHHHhcCeEEeCCCCCC--------------C-----------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQ--------------C-----------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~--------------~-----------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
....+.+.||.+++++ ++ + ..++++|++++. ++.++.+++|.+++++
T Consensus 311 ~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 311 LRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRA 382 (386)
T ss_dssp HHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 3445667899887431 11 1 125899999986 3445555555555543
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=233.97 Aligned_cols=293 Identities=13% Similarity=0.140 Sum_probs=200.7
Q ss_pred HHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCc--EEEEEeccC
Q 011801 93 QAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGV--QIVPVHCDI 167 (477)
Q Consensus 93 ~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~--~~~~v~~~~ 167 (477)
++++++++ .+++.|++++| ++|+.+++.++.++||.|+++.|+|+.+... +... |. +++++++++
T Consensus 76 ~~la~~~g--------~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~ 145 (405)
T 2vi8_A 76 ERAKQLFG--------AEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDP 145 (405)
T ss_dssp HHHHHHHT--------CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCT
T ss_pred HHHHHHhC--------CCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhc-cceeEEEeccccc
Confidence 46777664 33444555666 9999999999999999999999999887541 1222 44 777787653
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.++.+|+++|++++++. ++++|++ +|+|+ |...+ +++|.++|+++|+++|+||+|+...........
T Consensus 146 -~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-- 212 (405)
T 2vi8_A 146 -ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN-- 212 (405)
T ss_dssp -TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--
T ss_pred -ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCCC--
Confidence 36789999999998753 5777766 56554 45545 889999999999999999999842221111111
Q ss_pred HhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHhc-cc--CCCchHHHHHHHHhcCChhhHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKMS-SF--GLVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~~-~~--~~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
.+ . ..+ ++++|+||.+| .+| ||++++ +.+.+.+.... .+ +..+.....++...+.... +.+++
T Consensus 213 ~~-~----~~d--i~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~ 279 (405)
T 2vi8_A 213 PV-P----YAH--FVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--QDDFK 279 (405)
T ss_dssp ST-T----TCS--EEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHH
T ss_pred cc-c----cCC--EEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH--hhhHH
Confidence 11 1 122 78899999997 566 999996 44555444432 22 2222333333344443211 23467
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC----CCCCCC
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS----FQCTEP 398 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~----f~~~~~ 398 (477)
+..++++++++++.+.|++.|+++..+ ..++++|++++... .. ..++.+.+ .++||.++||.. +....+
T Consensus 280 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~ 353 (405)
T 2vi8_A 280 AYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ----LT-GKTAEKVL-DEVGITVNKNTIPYDPESPFVT 353 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT----CC-HHHHHHHH-HHHTEECEEECCTTCSSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCC----CC-HHHHHHHH-HHcCceeccCcCccccCCCCCC
Confidence 778888999999999999989888764 45789999987421 01 12354444 567999999863 333346
Q ss_pred CEEEEEecc-----CCHHHHHHHHHHHHHHHhhh
Q 011801 399 GWFRVCFAN-----MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 399 ~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~ 427 (477)
+++|++++. ++++++++++++|++++++.
T Consensus 354 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred CceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 789999984 58999999999999999764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=232.63 Aligned_cols=278 Identities=14% Similarity=0.170 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEecc
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVHCD 166 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~~~ 166 (477)
++++++|++++ .+ +.|++++| ++|+.+++.++.++||.|+++.|+|+++...+.. ..|++++.++.
T Consensus 2 ~l~~~la~~~g--------~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 70 (331)
T 1pff_A 2 ALEGKIAKLEH--------AE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM- 70 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-
T ss_pred hHHHHHHHHhC--------CC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-
Confidence 68999999987 22 45555555 8999999999999999999999999988766532 23999988875
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh-cCeEEEecccccccccCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND-KNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~-~~~~lI~De~y~~~~~~~~~~~s 245 (477)
.|++++++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|+...+.. +
T Consensus 71 ------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~----~ 131 (331)
T 1pff_A 71 ------AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----P 131 (331)
T ss_dssp ------TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC----G
T ss_pred ------CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC----h
Confidence 367788887753 7899999999999999998 8889999999 999999999998543321 1
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCHHHHHHHHHhccc---CCCchHHHHHHHHhcCChhhHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFNDTVVNCGRKMSSF---GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~~i~~~~~~~~~~---~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
. ..+.++++.|+||.+|.||.| +||++++++.+.+.++..... +..++..++++...+...
T Consensus 132 ~---------~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 196 (331)
T 1pff_A 132 L---------DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL------ 196 (331)
T ss_dssp G---------GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH------
T ss_pred h---------hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchH------
Confidence 1 124568899999999999999 899999763555555554333 246667777665555421
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC---------------CCeEecC---CceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV---------------GINCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~---------------gi~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
....+.+.++.+.+.+.|++. |+++..+ ..+.++++.++. . +.....+++.
T Consensus 197 -~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~l~~~ 265 (331)
T 1pff_A 197 -DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---L-------EKAKKVLDNC 265 (331)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---H-------HHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---H-------HHHHHHHHhC
Confidence 111222223333333333321 2222211 134566777651 1 1244566778
Q ss_pred CeEEeCCCCCC------------------------CCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 384 KLNVSPGSSFQ------------------------CTEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 384 gI~v~pg~~f~------------------------~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
||.+++++.-+ ...++++|++++.. ++++++.+++.|+++
T Consensus 266 gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 266 HVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99876653111 01258999999875 677777777777643
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=234.84 Aligned_cols=357 Identities=10% Similarity=0.013 Sum_probs=214.4
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .+.++ .+.+.+.+.+.. .....|....+..+.+.++++.+.+..+. ..
T Consensus 58 ~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~ 121 (451)
T 3oks_A 58 VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV-------------GDFTHTCFMVTPYEGYVAVCEQLNRLTPV---RG 121 (451)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHH-------------TTCSCCTTTTSCCHHHHHHHHHHHHHSSC---CS
T ss_pred CCCCEEEEcCCCccccccCCCCHHHHHHHHHHH-------------HhcccccCCccCCHHHHHHHHHHHHhCCc---CC
Confidence 445668999876 55553 455666555431 12233443345567777777777765431 12
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCc-------------EEEEEeccCC--CCc-c
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGV-------------QIVPVHCDIS--NNF-K 172 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~-------------~~~~v~~~~~--~~f-~ 172 (477)
+++|++|+|+++|++.+++.+.. .++.|++.+|+|+++...+...++. .+..++.... +.+ .
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 201 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFG 201 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGC
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence 57999999999999999977643 4589999999999876544322111 3444443210 000 0
Q ss_pred c--------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 173 I--------TREALEAAYERAQEASINIKGLIITNPSNPLG--TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 173 i--------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+ +++.+++++++.. +.+..++++++|.|++| ...+.+.+++|.++|++||++||+||+|.++...+..
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 202 KELATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 1 2444445554321 11334567778877766 3447777999999999999999999999986554432
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.... .. +..++ +.||||.+| +|+|+||+++++ .+.+.+... ...+..++++|.++.++|+..+- ++
T Consensus 280 -~~~~-~~---~~~pd----i~t~sK~l~-~G~~iG~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~ 347 (451)
T 3oks_A 280 -FACE-HE---GIDPD----LIVTAKGIA-GGLPLSAVTGRA-EIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EG 347 (451)
T ss_dssp -SGGG-GG---TCCCS----EEEECGGGG-TTSSCEEEEEEH-HHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TT
T ss_pred -hhhh-hc---CCCCC----eeeehhhhh-CCcceEEEEECH-HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hh
Confidence 2211 11 11222 238999998 599999999954 444433322 22234678889888887763211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh-hccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL-KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~-~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
++++.++.....++.+.+.+.+.+........|+|+|+.+.... .........++++.+++ +||.+.|+..| .+
T Consensus 348 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~ 422 (451)
T 3oks_A 348 LVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY----GN 422 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----CC
Confidence 22333333333333344444444332222334578888884310 00111122346666664 59999998655 35
Q ss_pred EEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 400 WFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 400 ~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
++|++++.. +++++++++++|++++++
T Consensus 423 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 423 VVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 899998754 899999999999999864
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=235.85 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=216.0
Q ss_pred CCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCC-CCcHHHHHHHHHHHhcccCCCCccC
Q 011801 36 NPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDY-HGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
+...+||++.+. +.++ ++.+.+++.+.-. ... +... .+..++++++++.+.+..+ .+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~-------------~~~-~~~~~~~~~~~~~~l~~~la~~~~----~~ 109 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLS-------------TLD-YSPGFQYGHPLSFQLAEKITDLTP----GN 109 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTT-------------TCS-CCCSSSCCCHHHHHHHHHHHTTSS----TT
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHH-------------hCC-CccccccCCHHHHHHHHHHHHhCC----CC
Confidence 344578887655 4442 3556666655311 111 1111 2334555666666655433 35
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHH-HHhhh-------------CCcEEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDR-DLSWR-------------TGVQIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~-~~~~~-------------~g~~~~~v~~~~~ 168 (477)
+++|++|+|+++|+++++.++.. +||.|++.+|+|+++.. .+... .|+..++++....
T Consensus 110 ~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (449)
T 3a8u_X 110 LNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189 (449)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGG
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcccc
Confidence 78999999999999999988753 67999999999988643 33322 1234444432111
Q ss_pred CCc-ccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 169 NNF-KIT--------REALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 169 ~~f-~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.+| .+| +++|++++++.. ..++++ ++++|+ ||||. +.+++++++|.++|+++|++||+||+|.++.
T Consensus 190 ~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 190 NAYSRGMPKEGGIALADELLKLIELHD--ASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266 (449)
T ss_dssp GTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred CccccCChHHHHHHHHHHHHHHHHhcC--CCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence 111 245 899999887421 025554 556675 67997 5578999999999999999999999998654
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-----------cccCCCchHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-----------SSFGLVSSQTQ 305 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-----------~~~~~vs~~~q 305 (477)
+.+.. .... ... ..++ ++ ||||.++ +| +|+||+++++ .+.+.+... ......+++++
T Consensus 267 ~~g~~-~~~~-~~~---~~~d--i~--s~sK~l~-~G~~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (449)
T 3a8u_X 267 RTGSM-FGAD-SFG---VTPD--LM--CIAKQVT-NGAIPMGAVIAST-EIYQTFMNQPTPEYAVEFPHGYTYSAHPVAC 335 (449)
T ss_dssp TTSSS-SHHH-HHT---CCCS--EE--EECGGGG-TTSSCCEEEEEEH-HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHH
T ss_pred ccCcc-hhhh-hcC---CCCC--EE--EEccccc-CCCCceEEEEECH-HHHHHhhccCcccccccccccCCCcccHHHH
Confidence 43332 1222 211 1223 22 8999998 68 9999999865 455544432 11123567788
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 306 YLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 306 ~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
.++.+.|+..+ + .+..++++++.+.+.+.|++++ +.. ..+..|+|+|++++....... ....++.+.+++
T Consensus 336 aa~~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~l~~- 408 (449)
T 3a8u_X 336 AAGLAALCLLQ---K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI-VRPFEAGMALWK- 408 (449)
T ss_dssp HHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSS-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCccccc-ccHHHHHHHHHH-
Confidence 77777775321 1 1234556666677777776642 221 112356899999975321110 011246677765
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.||.++|+ + +++||++.. .+++++++++++|++++++
T Consensus 409 ~Gv~v~~~------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 409 AGFYVRFG------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp HTEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEecC------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 59999987 1 689999753 4999999999999999865
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=233.94 Aligned_cols=193 Identities=24% Similarity=0.276 Sum_probs=147.3
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRT 156 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~ 156 (477)
+|+. .+..+|++++|++++. .+.|++++| ++|+..++. ++++||.|+++.|.|++.... ++..
T Consensus 63 r~~~-p~~~~l~~~la~~~g~---------~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~- 129 (403)
T 3cog_A 63 RSGN-PTRNCLEKAVAALDGA---------KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEF- 129 (403)
T ss_dssp ---C-HHHHHHHHHHHHHHTC---------SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGG-
T ss_pred CCCC-chHHHHHHHHHHHhCC---------CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHc-
Confidence 4443 3568999999999972 256777766 589999998 899999999999999975443 3445
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC-eEEEecccccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN-IHLVCDEIYAA 235 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~-~~lI~De~y~~ 235 (477)
|++++.++.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+||+|+.
T Consensus 130 G~~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 130 GLKISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp TCEEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTC
T ss_pred CCEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcc
Confidence 9999998864 68888888753 7899999999999999998 888999999999 99999999986
Q ss_pred cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhc
Q 011801 236 TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASML 312 (477)
Q Consensus 236 ~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L 312 (477)
..+.. + + ..+.+++++|+||.+|.+| .|+||++++++.+.+.++... .++ ..+++.++++...+
T Consensus 194 ~~~~~-~---~---------~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l 260 (403)
T 3cog_A 194 PYFQR-P---L---------ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGL 260 (403)
T ss_dssp TTTCC-T---T---------TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred cccCC-c---c---------ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 54321 1 1 1245688999999999776 479999997666655554332 233 35778888877777
Q ss_pred CCh
Q 011801 313 SDD 315 (477)
Q Consensus 313 ~~~ 315 (477)
...
T Consensus 261 ~~l 263 (403)
T 3cog_A 261 KTL 263 (403)
T ss_dssp TTH
T ss_pred hHH
Confidence 653
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=238.44 Aligned_cols=345 Identities=10% Similarity=0.040 Sum_probs=207.7
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+. |.++ ++.+.+.+.+..+. + ....|+ .....+|++++++++. +
T Consensus 52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~------~-----~~~~~~-~~~~~~l~~~la~~~~---------~ 110 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN------G-----VLYGTP-TALEVKFAKMLKEAMP---------A 110 (434)
T ss_dssp TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH------C-----SCCSSC-CHHHHHHHHHHHHHCT---------T
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh------C-----cCCCCC-CHHHHHHHHHHHHhCC---------C
Confidence 4456688987664 5553 46666665542110 0 012243 2345677777777753 3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc------------cCHH
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK------------ITRE 176 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~------------i~~~ 176 (477)
+++|++|+|+++|++.+++.+.. +++.|++.+|+|+++...+....|.....+......++. -|++
T Consensus 111 ~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 190 (434)
T 3l44_A 111 LDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVE 190 (434)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHH
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHH
Confidence 78999999999999999987654 679999999999887654433323322211111111110 1789
Q ss_pred HHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhcc
Q 011801 177 ALEAAYERAQEASINIKGLIITNPS-NPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD 254 (477)
Q Consensus 177 ~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~ 254 (477)
+|++++++. ..++++ ++++|+ |++|.+. +++.+++|.++|++||++||+||+|.++ ..+.. ... +...
T Consensus 191 ~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~-~~~-~~~~--- 260 (434)
T 3l44_A 191 TLKEALDKW---GHEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYG-GAQ-DLLG--- 260 (434)
T ss_dssp HHHHHHHHH---GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSS-CHH-HHHT---
T ss_pred HHHHHHHhC---CCCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecccc-HHH-HHcC---
Confidence 999988753 124554 555564 5566655 8889999999999999999999999986 33322 111 1211
Q ss_pred CCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcC---ChhhHHHHHHHHH
Q 011801 255 CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLS---DDEFVDNFLVETS 326 (477)
Q Consensus 255 ~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~ 326 (477)
..++ +.||||.+| +|+|+||+++++ .+.+.+.+ ....+..++++|.++.+.|+ +.++ +++.+
T Consensus 261 ~~~d----i~t~sK~~~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~----~~~~~ 330 (434)
T 3l44_A 261 VTPD----LTALGKVIG-GGLPIGAYGGKK-EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGL----YEKLD 330 (434)
T ss_dssp CCCS----EEEEEGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH----HHHHH
T ss_pred CCCC----eeehhhhhc-CCcCeeeEEEcH-HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccH----HHHHH
Confidence 1222 348999999 999999998854 44444333 12223467788887777665 3232 22222
Q ss_pred HHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh-------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 327 KRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK-------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 327 ~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~-------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+.....++.|.+.+.+.++....+..|+|+++.+..... ........++++.+++ .||.++|+. .+
T Consensus 331 ~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~ 403 (434)
T 3l44_A 331 ELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YE 403 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CC
Confidence 222222233333334445433333445677777742110 0011112345666655 599999874 24
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++|+++. .+++++++++++|++++++.+
T Consensus 404 ~~rl~~~-~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 404 AWFLTTE-HTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp CEECCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecc-cCHHHHHHHHHHHHHHHHHHH
Confidence 5888764 499999999999999997643
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=238.73 Aligned_cols=350 Identities=11% Similarity=0.027 Sum_probs=210.1
Q ss_pred CCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .+.+ +.+.+.+.+.+.- .....|....+..+.++++++++.+..+ .+
T Consensus 41 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 103 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHGHRKKELDDAIKKQL-------------GKIAHSTLLGMTNVPATQLAETLIDISP----KK 103 (448)
T ss_dssp TTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHH-------------TTCSCCCCSSSEEHHHHHHHHHHHHHSC----TT
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC----CC
Confidence 345668898765 3444 3455666555421 1222233334556777888888776543 34
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC----CC----CeEEEcCCCccchHHHHhhhCCc------------EEEEEeccCCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN----PG----DAFLVPSPYYAAFDRDLSWRTGV------------QIVPVHCDISNN 170 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~----~G----d~vlv~~P~y~~~~~~~~~~~g~------------~~~~v~~~~~~~ 170 (477)
.++|++|+|+++|++.+++++.. +| |.|++.+|+|+++........|. .+..++.+ +.
T Consensus 104 ~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 181 (448)
T 3dod_A 104 LTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YV 181 (448)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--cc
Confidence 58999999999999999988765 44 99999999998876443322221 12233322 22
Q ss_pred ccc-----------CHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 171 FKI-----------TREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 171 f~i-----------~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
|+. |+++|+++++.. ..++++|++..++ |++|. +.+.+.+++|.++|++||++||+||+|.++.
T Consensus 182 ~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g 258 (448)
T 3dod_A 182 YRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG 258 (448)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 332 378888888732 2256666665555 78884 5678889999999999999999999999865
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-------h--cccCCCchHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-------M--SSFGLVSSQTQYL 307 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-------~--~~~~~vs~~~q~~ 307 (477)
..+..+ .. +.. +..++ +.+|||.+| +| +|+||++++++ +.+.+.+ . ......++++|.+
T Consensus 259 ~~g~~~-a~-~~~---~~~~d----i~t~sK~l~-~G~~~ig~v~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 327 (448)
T 3dod_A 259 RTGKMF-AC-EHE---NVQPD----LMAAGKGIT-GGYLPIAVTFATED-IYKAFYDDYENLKTFFHGHSYTGNQLGCAV 327 (448)
T ss_dssp TTSSSS-GG-GGG---TCCCS----EEEECGGGG-TTSSCCEEEEEEHH-HHHTTCSCGGGCCCCCCCCTTTTCHHHHHH
T ss_pred cccchh-hh-hhc---CCCCC----EEEeccccc-CCcCceEEEEECHH-HHHHhhhccccCCcccccCCCCcCHHHHHH
Confidence 555433 11 111 11222 337899998 69 59999999554 5444433 1 1223367788888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc-CchH----HHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK-TLEG----EIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~-~~~~----e~~l~~~ll~~ 382 (477)
+.+.|+..+- ++.+++.++..+..++.+.+ +.+.+........|+|+|+.++...... .+.. ..++++.++++
T Consensus 328 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (448)
T 3dod_A 328 ALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL 405 (448)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC
Confidence 8887763211 12233333333334444544 5444432222334578899887532210 0100 13566777654
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
||.+.|+ .+++|++++. .+++++++++++|++++++.
T Consensus 406 -Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 406 -GMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp -TEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999887 2689997654 49999999999999999764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=235.51 Aligned_cols=330 Identities=13% Similarity=0.104 Sum_probs=218.0
Q ss_pred CCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||+..+.+ .+ +.+.+.+++.+.-+... . ....|+ .....++++.++++++ +
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-------~--~~~~~~-~~~~~~l~~~la~~~g----------~ 133 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-------L--TSRAFY-NNVLGEYEEYITKLFN----------Y 133 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-------C--CCTTSE-ESSHHHHHHHHHHHHT----------C
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-------c--ccCccC-CHHHHHHHHHHHHhcC----------C
Confidence 3456789887654 33 34556666655311100 0 001232 2345788888888764 5
Q ss_pred CcEEEeCChHHHHHHHHHHhc---------CCC-CeEEEcCCCccchHH-HHhhhCC------------cEEEEEeccCC
Q 011801 112 DRIVMGGGATGANELIMFCLA---------NPG-DAFLVPSPYYAAFDR-DLSWRTG------------VQIVPVHCDIS 168 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~---------~~G-d~vlv~~P~y~~~~~-~~~~~~g------------~~~~~v~~~~~ 168 (477)
++|++++|+++|++.++.++. .+| |.|++.+|+|++... .+... | .+++.++.+
T Consensus 134 ~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~-g~~~~~~~~~p~~~~v~~~~~~-- 210 (439)
T 2oat_A 134 HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSS-TDPTSYDGFGPFMPGFDIIPYN-- 210 (439)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTC-CCHHHHTTSCSCCTTEEEECSS--
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcC-CChhcccCCCCCCCCeEEeCCC--
Confidence 789999999999999998864 467 899999999987643 33332 4 355666532
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPS-NPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
|+++|++++++ .++++|+ ++|. |++|. ..+.+.+++|.++|++||+++|+||+|.++...+..+ ..
T Consensus 211 -----d~~~le~~l~~-----~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~~ 278 (439)
T 2oat_A 211 -----DLPALERALQD-----PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AV 278 (439)
T ss_dssp -----CHHHHHHHTTS-----TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GG
T ss_pred -----CHHHHHHHhCC-----CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-hH
Confidence 78999888751 2676555 5564 67896 5688999999999999999999999998754444322 11
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
+.. +..++ ++ ||||.+| +| +|+||++++++ +.+.+... ......+++++.++.+.|+..+ + +
T Consensus 279 -~~~---~~~~D--i~--t~sK~l~-~G~~~~G~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~ 343 (439)
T 2oat_A 279 -DYE---NVRPD--IV--LLGKALS-GGLYPVSAVLCDDD-IMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE---E--E 343 (439)
T ss_dssp -GGG---TCCCS--EE--EECGGGG-TTSSCCEEEEECHH-HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH---H--T
T ss_pred -HHh---CCCCc--EE--Eeccccc-CCCCCeEEEEECHH-HHhccCCCCcccCCCcCHHHHHHHHHHHHHHh---h--h
Confidence 111 11223 22 9999999 79 99999999654 44333221 1222357777777777765321 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEe--cCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEE
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCL--KSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWF 401 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~--~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~ 401 (477)
+..++++++++++.+.|+++++++. .+..|+|+|++++.... .. ..++++.+++ +||.+.|+ +++++
T Consensus 344 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~---~~-~~~l~~~l~~-~Gv~v~~~------~~~~i 412 (439)
T 2oat_A 344 NLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD---WD-AWKVCLRLRD-NGLLAKPT------HGDII 412 (439)
T ss_dssp THHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS---CC-HHHHHHHHHH-TTEECCBS------SSSEE
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc---HH-HHHHHHHHHH-CCeEEecC------CCCEE
Confidence 3456677788888889988754421 22356788998874210 11 2256777765 59999884 25789
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|++++. .+++++++++++|++++++
T Consensus 413 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 413 RFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECccCCCHHHHHHHHHHHHHHHHh
Confidence 998864 4999999999999998864
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=231.64 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=218.2
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.+++++.+.+.+.. +.+.+.+.. ....|.+..+..++++++|++++ .+++++++
T Consensus 7 ~~~~l~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~ 60 (374)
T 3uwc_A 7 PYSYLERQFADIEP--YLNDLREFI--------------KTADFTLGAELEKFEKRFAALHN----------APHAIGVG 60 (374)
T ss_dssp CSCCHHHHTSSCHH--HHHHHHHHH--------------HHTCCSSCHHHHHHHHHHHHHTT----------CSEEEEES
T ss_pred eeeccccCCCCchH--HHHHHHHHH--------------HcCCcccChhHHHHHHHHHHHhC----------CCcEEEeC
Confidence 46888888776665 555544421 11246666788999999999986 23789999
Q ss_pred ChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 119 GATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 119 G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+++|+.+++.++ .++||.|+++.|+|+++...++.. |.+++.++++ .++.+|++++++++++ ++++|+
T Consensus 61 ~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~- 130 (374)
T 3uwc_A 61 TGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQA-GATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM- 130 (374)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC-
T ss_pred CHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE-
Confidence 9999999999999 999999999999999999888876 9999999987 4678999999988753 677766
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCcccHHHhhhhccCCCCcEEEEecCC--cccCCCC
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPG 274 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G 274 (477)
|+||||.+.+ +++|.++|+++|+++|+||+|+... ++.... .....+++.|+| |.+|.+|
T Consensus 131 --~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~------------~~~~d~~~~s~~~~K~l~~~g 193 (374)
T 3uwc_A 131 --PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDKFV------------GSWGQFACFSLHPLKNLNVWS 193 (374)
T ss_dssp --CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEET------------TSSSSEEEEECSSSSSSCCSS
T ss_pred --EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCeec------------cccccEEEEeCCCCCcCCccc
Confidence 8999999988 8888899999999999999998431 222110 001236677866 9998547
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccC--------------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFG--------------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGL 340 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~--------------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L 340 (477)
. .|+++++++.+.+.+......+ .++.....+....+. . +++..++.++..+.+.+.|
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~--~-----~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 194 D-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN--Q-----LETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp C-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG--G-----HHHHHHHHHHHHHHHHHHT
T ss_pred e-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHh
Confidence 5 8999998877766555443211 122333322222221 1 2334455566667788888
Q ss_pred hhCC--CeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC--CCC-------------------
Q 011801 341 EQVG--INCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF--QCT------------------- 396 (477)
Q Consensus 341 ~~~g--i~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f--~~~------------------- 396 (477)
.+.+ +.+.. +..+...|+.++-... +..++.+.+. ++||.++++... ++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (374)
T 3uwc_A 266 VDLSEFIDVPVRREGVYHVFHIYVLRVK-----YRDQLFQYLK-DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKH 339 (374)
T ss_dssp GGGTTTEECCCCCTTEECCCSSEEEEET-----THHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHH
T ss_pred ccCCCeEEeccCCCCCceeeEEEEEEcC-----CHHHHHHHHH-HCCCccccCCCCccccChhhhhcCCccCCCccHHHH
Confidence 8774 54432 2222232222211000 1124555554 569999988511 100
Q ss_pred CCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 397 EPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 397 ~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
..+.+|+++.. .++++++.++++|++++++
T Consensus 340 ~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 340 GEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 01689998865 4999999999999999976
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=234.84 Aligned_cols=323 Identities=15% Similarity=0.197 Sum_probs=213.9
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccC-CCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQ-DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..+++.++.+.+.++... .+.+.+. + ....|+ +..+..++|+++|++++ .++++
T Consensus 21 ~~~~~~l~~~~p~~~~~~-~~a~~~~-------------~-~~~~~~~~~~~~~~l~~~la~~~~----------~~~~i 75 (391)
T 3dr4_A 21 MSDLPRISVAAPRLDGNE-RDYVLEC-------------M-DTTWISSVGRFIVEFEKAFADYCG----------VKHAI 75 (391)
T ss_dssp -------CCCCCCCCSSH-HHHHHHH-------------H-HHTCCSSCSHHHHHHHHHHHHHHT----------CSEEE
T ss_pred cCCCceeccCCCCCCHHH-HHHHHHH-------------H-HcCCccCCChHHHHHHHHHHHHhC----------CCcEE
Confidence 457888888887666333 3333321 0 112354 55688999999999997 23788
Q ss_pred EeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+++|+++|+.+++.++ .++||.|+++.|+|+++...++.. |.+++.++++. ++|.+|+++|++++++ ++++
T Consensus 76 ~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~ 147 (391)
T 3dr4_A 76 ACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYC-GATPVLVDNDP-RTFNLDAAKLEALITP------RTKA 147 (391)
T ss_dssp EESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTCSBCGGGSGGGCCT------TEEE
T ss_pred EeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHC-CCEEEEEecCc-cccCcCHHHHHHhcCC------CceE
Confidence 8999999999999999 899999999999999999888876 99999999874 4688999999988753 7887
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccc-ccCCCCcccHHHhhhhccCCCCcEEEEecCC--cccC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAAT-VFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMG 271 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~-~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g 271 (477)
|+ |+||||...+ +++|.++|+++|+++|+|++|+.. .+.+.. ... ..+ +.+.||| |.+
T Consensus 148 v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~-------~~d--i~~~S~s~~K~l- 208 (391)
T 3dr4_A 148 IM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKK---SGS-------LGD--CATFSFFGNAII- 208 (391)
T ss_dssp EC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTS-------SSS--EEEEECBTTSSS-
T ss_pred EE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCee---ecc-------cCC--EEEEECCCCCcC-
Confidence 66 5689999988 788899999999999999999842 222211 000 112 5667776 766
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhcccC----------------CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 272 LPGFRVGIVYSFNDTVVNCGRKMSSFG----------------LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 272 ~~G~RvG~i~~~~~~i~~~~~~~~~~~----------------~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
+|.+.|+++++++.+.+.++.....+ .++.+...+ .+.... .+++..++.++..++
T Consensus 209 -~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~--~~~~~~-----~~~~~~~~~~~~~~~ 280 (391)
T 3dr4_A 209 -TTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAI--GLAQLE-----RVDEHLAARERVVGW 280 (391)
T ss_dssp -CCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHH--HHHHHH-----THHHHHHHHHHHHHH
T ss_pred -CcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHH--HHHHHH-----HHHHHHHHHHHHHHH
Confidence 45679999998877766655443222 122222222 121111 134445556667778
Q ss_pred HHHHHhhCCCeEecC------Cce-EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC-CCC-----------
Q 011801 336 FTKGLEQVGINCLKS------NAG-LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF-QCT----------- 396 (477)
Q Consensus 336 l~~~L~~~gi~~~~~------~~g-~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f-~~~----------- 396 (477)
+.+.|.+.|+.+..+ ..+ +.+++.++.. .... ..++.+.+. +.||.+++|... ++.
T Consensus 281 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~~~~ 355 (391)
T 3dr4_A 281 YEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEG---LSTT-RDQVIKDLD-ALGIESRPVFHPMHIMPPYAHLATDDL 355 (391)
T ss_dssp HHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSS---CSSC-HHHHHHHHH-HTTCCCEECCCCGGGSGGGGGGCCTTC
T ss_pred HHHHhhcCCccccCcCCCCCCcceeEEEEEEECCc---cchh-HHHHHHHHH-HCCCceeecCCccccChhhhhcCcCCC
Confidence 888888878776654 122 2356666631 0111 124666655 459999988521 110
Q ss_pred ------CCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011801 397 ------EPGWFRVCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 397 ------~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
..+.+|+++.. +++++++.++++|++++
T Consensus 356 ~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 356 KIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 13479998865 49999999999998764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-26 Score=233.56 Aligned_cols=342 Identities=14% Similarity=0.072 Sum_probs=215.6
Q ss_pred cccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCC---CCCcHHHH--HHHH-HHHhcccCCCCccCCC
Q 011801 39 GVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD---YHGLPEFR--QAVA-KFMGKGRGGRVTFDPD 112 (477)
Q Consensus 39 ~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr--~aia-~~~~~~~g~~~~~~~~ 112 (477)
++|+|..++|+.++. +.+.+.+.... .....|+. +.|...++ ++++ +++.+..| .+
T Consensus 46 ~~i~l~~~~~~~~~~-v~~a~~~~~~~-----------~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g----~~-- 107 (447)
T 3h7f_A 46 DTLEMIASENFVPRA-VLQAQGSVLTN-----------KYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG----AE-- 107 (447)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CS--
T ss_pred CceeEecCCCCCCHH-HHHHHHHHhcC-----------CccccCCcccccCccHHHHHHHHHHHHHHHHHcC----CC--
Confidence 568888888877444 44444332100 00012221 23444444 4444 55554444 22
Q ss_pred cEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH-H--Hhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAAFDR-D--LSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~-~--~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
.+.+ ++|+++|+..++.++++|||.|++++|+|+++.. . +... .+..+++++++. +++.+|+++|++++++.
T Consensus 108 ~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-- 184 (447)
T 3h7f_A 108 FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEF-- 184 (447)
T ss_dssp EEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHH--
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhc--
Confidence 3444 7788899999999999999999999999987321 1 1111 145677777664 35789999999998653
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
++++|++++|+||++. ++++|.++|+++|++||+||+|. ++.+.+.. .+.. + ...+++.|+
T Consensus 185 ---~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~-~~~~---~------~~di~~~s~ 246 (447)
T 3h7f_A 185 ---RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLH-PSPV---P------HADVVSTTV 246 (447)
T ss_dssp ---CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-CCST---T------TCSEEEEES
T ss_pred ---CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCC-CCCC---C------CCcEEEecC
Confidence 6788899999999887 48899999999999999999974 33343322 1111 1 123678999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV- 343 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~- 343 (477)
||.+ +|+|.||++++++.+.........+ +......+.+++..+... .+..+++..+++.++++.+.+.|.+.
T Consensus 247 sK~l--~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~ 322 (447)
T 3h7f_A 247 HKTL--GGGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIADRLMAPD 322 (447)
T ss_dssp SGGG--CCCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred CcCC--CCCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988 4889999999665433332222222 222222233333333211 01234667778888889999999887
Q ss_pred ----CCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CC
Q 011801 344 ----GINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MD 409 (477)
Q Consensus 344 ----gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~ 409 (477)
|+++.. +..++++|++++... .. .+.+..++++.||.+. |+..+.+..++++|+++.. ++
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~ 396 (447)
T 3h7f_A 323 VAKAGVSVVSGGTDVHLVLVDLRDSP----LD--GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFG 396 (447)
T ss_dssp HHHTTCEEGGGSCSSSEEEEECTTSS----CC--HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCC
T ss_pred ccCCCeEEecCCCCCCEEEEEcCCCC----CC--HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCC
Confidence 888765 345678899886421 11 1345667778899998 6643444456789998854 47
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 011801 410 DDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 410 ~e~l~~~l~~l~~~~~~~~~ 429 (477)
++++++++++|++++.+..+
T Consensus 397 ~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 397 DTEFTEVADIIATALATGSS 416 (447)
T ss_dssp HHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHhccCc
Confidence 89999999999999976433
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=226.53 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=199.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~ 162 (477)
...++++.+|++++ .+++++++|+++|+..++.+++++||.|+++.|.|+++...+ +.. |.++..
T Consensus 67 ~~~~l~~~la~~~g----------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~ 135 (392)
T 3qhx_A 67 TRTALEAALAAVED----------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGG-TCEEEE
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhc-CcEEEE
Confidence 46788999999876 247899999999999999999999999999999999876655 445 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+ ..+
T Consensus 136 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~~~ 198 (392)
T 3qhx_A 136 VALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-QQP 198 (392)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CCG
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-CCh
Confidence 8864 78999988864 8999999999999999988 88899999999999999999974322 111
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhcc-c-CCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSS-F-GLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~-~-~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
. ..+..+++.|+||.+|.+| +|+||++++++.+...+..... + ...++..++++...++.-
T Consensus 199 ---~---------~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---- 262 (392)
T 3qhx_A 199 ---L---------SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL---- 262 (392)
T ss_dssp ---G---------GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH----
T ss_pred ---H---------HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH----
Confidence 1 1134578999999999777 8999999987666555543322 2 335667777777777652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
....+++.++.+.+.+.|++. ++. +..+ ..|..+++.++... .....+.. .++
T Consensus 263 ---~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~-~l~ 333 (392)
T 3qhx_A 263 ---VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCA-KTN 333 (392)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHH-HCS
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHH-hCC
Confidence 223345556666777777765 332 2111 12567888887421 11112322 234
Q ss_pred hcCeEEeCCCCCC----C--------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 382 DVKLNVSPGSSFQ----C--------------TEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 382 ~~gI~v~pg~~f~----~--------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
..|+.++.|+.+. + ..++.+|||++. |+.+..++.|.+++
T Consensus 334 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 334 IFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp SSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred CceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 5577788887643 1 136789999985 45556666666554
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=230.80 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh----hCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW----RTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~----~~g~~~~~v 163 (477)
..+|++.+|++++ .+++++++|+++|+..++.+++++||.|+++.|+|+++...+.. . |++++.+
T Consensus 83 ~~~l~~~la~~~g----------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~v 151 (414)
T 3ndn_A 83 VSVFEERLRLIEG----------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFV 151 (414)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHc-CcEEEEe
Confidence 4566666666654 36789999999999999999999999999999999998766543 5 9999999
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.+ |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|++||+||+|+...+.. +
T Consensus 152 ~~~-------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~- 213 (414)
T 3ndn_A 152 DGD-------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ-G- 213 (414)
T ss_dssp CTT-------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-C-
T ss_pred CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC-c-
Confidence 864 68999888753 7899999999999999988 8889999999999999999997432211 1
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hcccC-CCchHHHHHHHHhcCChhhHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSSFG-LVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~~~-~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
. ..+..+++.|+||.+|.+| +|+|+++++++.+...++. ...++ ..+++..+++...+..
T Consensus 214 --~---------~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~------ 276 (414)
T 3ndn_A 214 --F---------PLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET------ 276 (414)
T ss_dssp --G---------GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG------
T ss_pred --h---------hcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------
Confidence 1 1134578899999999878 8999999977655434432 23333 2455555544444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CCe-EecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV-GIN-CLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+....+++.++++.+.+.|++. ++. +..| ..|.++|+.++.... ...+....+... ++.
T Consensus 277 -l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~-l~~ 353 (414)
T 3ndn_A 277 -LAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDK-MRL 353 (414)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHH-CSS
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHh-Ccc
Confidence 2334455566777888888776 332 2211 246789999974200 000111123333 334
Q ss_pred cCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 383 VKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 383 ~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.++.+++|+.+.. ..++++||+++. |+.+.+++.|++++
T Consensus 354 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 354 IDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp SEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred ceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 5777888875532 236799999985 55666677777665
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=234.96 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=212.3
Q ss_pred CCCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||++.+. |.++ ++.+.+.+.+..+ .+ ....|+ .....+|++++++++.
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~------~~-----~~~~~~-~~~~~~l~~~la~~~~--------- 107 (429)
T 3k28_A 49 DIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE------RG-----TSFGAP-TEIENKLAKLVIERVP--------- 107 (429)
T ss_dssp ETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH------HC-----SCCSSC-CHHHHHHHHHHHHHST---------
T ss_pred ECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh------hC-----cCcCCC-CHHHHHHHHHHHHhCC---------
Confidence 34556789998764 5553 4666666655211 00 011233 3356788888888763
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcc------------cCH
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFK------------ITR 175 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~------------i~~ 175 (477)
.+++|++|+|+++|++.+++.+.. +++.|++.+|+|+++...+....|.....+......++. -|+
T Consensus 108 ~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 187 (429)
T 3k28_A 108 SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDL 187 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCH
Confidence 368999999999999999987653 678999999999876654433323322222211111111 078
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 176 EALEAAYERAQEASINIKGLIITNPS-NPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
++|++++++.. .++++ ++++|+ |++|.+. +++++++|.++|++||++||+||+|.++ ..+.. ...+...
T Consensus 188 ~~le~~l~~~~---~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~~~~-- 258 (429)
T 3k28_A 188 ESVKYAFEQFG---DDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYN--CGQGYYG-- 258 (429)
T ss_dssp HHHHHHHHHHG---GGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTT--HHHHHHT--
T ss_pred HHHHHHHHhCC---CCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hHHHHhC--
Confidence 99999887531 24555 555554 5566555 6788999999999999999999999876 43322 1112211
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~ 328 (477)
..++ +.||||.+| +|+|+||++++++ +.+.+.. ....+..++++|.++.+.|+..+ ++..++
T Consensus 259 -~~~d----i~t~sK~~~-~G~~iG~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~ 325 (429)
T 3k28_A 259 -VTPD----LTCLGKVIG-GGLPVGAYGGKAE-IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVE 325 (429)
T ss_dssp -CCCS----EEEECGGGG-TTSCCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHH
T ss_pred -CCCc----eehhhhhhc-CCCCeEEEEEcHH-HHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHH
Confidence 1122 347999998 6999999999554 4443332 11223467888888888887543 233444
Q ss_pred HHHHHHHHHHHHhh----CCC-eEecCCceEEEEeeccchhh-------ccCchHHHHHHHHHHHhcCeEEeCCCCCCCC
Q 011801 329 LAKRHHNFTKGLEQ----VGI-NCLKSNAGLFFWMDLRHLLK-------EKTLEGEIALWRTIVNDVKLNVSPGSSFQCT 396 (477)
Q Consensus 329 l~~r~~~l~~~L~~----~gi-~~~~~~~g~~~~~~l~~~~~-------~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~ 396 (477)
++++++++.+.|++ .++ .... ..|.|+++.+..... ........++++.++ +.||.+.|+.
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----- 398 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHIN-RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMV-EQGVFLPPSQ----- 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEE-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-HTTEECCSST-----
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEE-eeccEEEEEEecCCcccccccccccHHHHHHHHHHHH-HCCeEEecCC-----
Confidence 55555555555554 333 2333 345677777743110 011111235666666 4599999873
Q ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 397 EPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 397 ~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+.+|+++. .+++++++++++|++++++.
T Consensus 399 -~~~~r~~~~-~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 399 -FEGLFLSTV-HSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -TSCBCCCTT-CCHHHHHHHHHHHHHHHHTC
T ss_pred -CCCEEEECC-CCHHHHHHHHHHHHHHHHHH
Confidence 346888765 49999999999999998763
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=236.66 Aligned_cols=320 Identities=16% Similarity=0.218 Sum_probs=207.8
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC-----C----CeEEEcCCCccchHHH
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP-----G----DAFLVPSPYYAAFDRD 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~-----G----d~vlv~~P~y~~~~~~ 151 (477)
.|....+..+|++++|++++ .+++++|+|+++|+.+++.++.++ | |.|++..+.|..+...
T Consensus 69 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~ 138 (467)
T 2oqx_A 69 AYSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred eeccCchhHHHHHHHHHHhC----------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhh
Confidence 57766778999999999986 368999999999999999998888 8 9988774444433334
Q ss_pred HhhhCCcEEEEEec----cCC----CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHh
Q 011801 152 LSWRTGVQIVPVHC----DIS----NNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 152 ~~~~~g~~~~~v~~----~~~----~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~ 222 (477)
.... |..++.... +.. .++.+|+++|++++++.. ..++++|++++|+||+ |.+++.+++++|.++|++
T Consensus 139 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhcc-CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 4433 666654321 111 245789999999997521 1268999999999998 899999999999999999
Q ss_pred cCeEEEecccccc----------cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC-CceEEEEEeCCH-H--HH
Q 011801 223 KNIHLVCDEIYAA----------TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP-GFRVGIVYSFND-T--VV 288 (477)
Q Consensus 223 ~~~~lI~De~y~~----------~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~-G~RvG~i~~~~~-~--i~ 288 (477)
||++||+|++++. ..+.+. +...+..+.-...+ +++.|+||.+|+| | ||++++++ . ..
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~ 287 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKDW---TIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVY 287 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTS---CHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHH
T ss_pred cCCEEEEEchhhhhhhhhcccccccccCc---cHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecChhHHHHH
Confidence 9999999965542 123332 22222100000123 3578999999977 5 88888766 2 22
Q ss_pred HHHHHhc-------ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeecc
Q 011801 289 NCGRKMS-------SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLR 361 (477)
Q Consensus 289 ~~~~~~~-------~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~ 361 (477)
..++... .++..+.....++...+. ++++ ++..++..++.+.+.+.|++.|+++. +.+++++|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~ 361 (467)
T 2oqx_A 288 TECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--DGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAG 361 (467)
T ss_dssp HHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH--HTTC---HHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHH
T ss_pred HHHHHhhhccCCcccccchhhhHHHHHHHhhH--hhhh---HHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEech
Confidence 2222221 112222222222222211 1101 11223345677888888888888877 778899999985
Q ss_pred c---hhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC-----------CCCEEEEEecc--CCHHHHHHHHHHHHHHHh
Q 011801 362 H---LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT-----------EPGWFRVCFAN--MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 362 ~---~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----------~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~ 425 (477)
. ..+...+. ..++++.++.+.||.+.|++.|... ..+++|++++. .+++++++++++|+++++
T Consensus 362 ~~~~~~~~~~~~-~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~ 440 (467)
T 2oqx_A 362 KLLPHIPADQFP-AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp HHSTTSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCccccc-HHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 3 11211111 2345777757779999996543111 13799999984 589999999999999997
Q ss_pred hhh
Q 011801 426 QDK 428 (477)
Q Consensus 426 ~~~ 428 (477)
+.+
T Consensus 441 ~~~ 443 (467)
T 2oqx_A 441 NAA 443 (467)
T ss_dssp SGG
T ss_pred hhh
Confidence 643
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=226.65 Aligned_cols=282 Identities=18% Similarity=0.177 Sum_probs=194.1
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~ 161 (477)
....++++.++++++ . ++.++++++++|+..++.+++++||.|+++.|.|+++...+ ... |+++.
T Consensus 65 ~~~~~l~~~la~~~g--------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-g~~~~ 133 (398)
T 1gc0_A 65 PTLNLLEARMASLEG--------G--EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLR 133 (398)
T ss_dssp HHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEE
T ss_pred hHHHHHHHHHHHHhC--------C--CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHc-CCEEE
Confidence 356789999999886 1 24555555589999999999999999999999999887655 444 99998
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+..
T Consensus 134 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~- 196 (398)
T 1gc0_A 134 HVDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR- 196 (398)
T ss_dssp EECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred EECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 88753 68888888753 7899999999999999998 8899999999999999999998654321
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhc-c-c-CCCchHHHHHHHHhcCChhh
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMS-S-F-GLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~-~-~-~~vs~~~q~~~~~~L~~~~~ 317 (477)
++ ..+.++++.|+||.+|.+|.|+ ||++++++.+...++... . + +..+++.++++...++..
T Consensus 197 ---~~---------~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 262 (398)
T 1gc0_A 197 ---PL---------ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL-- 262 (398)
T ss_dssp ---GG---------GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--
T ss_pred ---ch---------hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--
Confidence 11 1134588899999999999998 999997665543443322 2 2 346777777776776542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-C--------------eEecC---CceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVG-I--------------NCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~g-i--------------~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
....+++.++.+.+.+.|++.+ + ++..+ ..|.++.++++.. .+....+
T Consensus 263 -----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~ 328 (398)
T 1gc0_A 263 -----NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG---------IGAGRRF 328 (398)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH---------HHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC---------HHHHHHH
Confidence 2233444555566666666542 1 11111 1234555666531 1234556
Q ss_pred HHhcCeEEeC---CCCC----------CC-----------CCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 380 VNDVKLNVSP---GSSF----------QC-----------TEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 380 l~~~gI~v~p---g~~f----------~~-----------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+++.|+.+.. |+.. ++ ..++++||+++.. ++++++.+.+.|+++
T Consensus 329 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 329 MNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 7777887765 4221 01 1257999999864 566666666666543
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=232.88 Aligned_cols=337 Identities=11% Similarity=0.058 Sum_probs=206.5
Q ss_pred CCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||++.+. |.++ ++.+.+.+.+.- +....|.. ..++++++++++.+..+ +
T Consensus 49 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~---~~~~~~~la~~l~~~~~-----~ 107 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFGA---PCALENVLAEMVNDAVP-----S 107 (427)
T ss_dssp TTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------TTCSCCSS---CCHHHHHHHHHHHHHST-----T
T ss_pred CCCCEEEECCCchhhhccCCCCHHHHHHHHHHH-------------HhCCCcCC---CCHHHHHHHHHHHHhCC-----C
Confidence 4456689998775 5553 466666665521 11122322 34666666666665433 4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcE-------------------EEEEeccCCC
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQ-------------------IVPVHCDISN 169 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~-------------------~~~v~~~~~~ 169 (477)
+++|++++|+++|++.++.... ..++.|++.+|+|+++...+....|.. ++.++.+
T Consensus 108 ~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 184 (427)
T 3fq8_A 108 IEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN--- 184 (427)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC---
Confidence 7899999999999999994321 235789999999987554332221211 2333321
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCC-HHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD-RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~-~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
|+++|++++++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+.. ...+
T Consensus 185 ----d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~--~~~~ 254 (427)
T 3fq8_A 185 ----DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYG--GVQE 254 (427)
T ss_dssp ----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT--HHHH
T ss_pred ----CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc--hhhH
Confidence 789999988752 225666666655677887665 556999999999999999999999975 43322 1111
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----cccCCCchHHHHHHHHhcC---ChhhHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----SSFGLVSSQTQYLLASMLS---DDEFVDN 320 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----~~~~~vs~~~q~~~~~~L~---~~~~~~~ 320 (477)
... ..++ +.||||.+| +|+|+||+++++ .+.+.+... ...+..+++++.++.+.|+ +.++
T Consensus 255 ~~~---~~~d----i~t~sK~~~-~G~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~--- 322 (427)
T 3fq8_A 255 KFG---VTPD----LTTLGKIIG-GGLPVGAYGGKR-EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT--- 322 (427)
T ss_dssp HTT---CCCS----EEEECGGGG-TTSSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH---
T ss_pred hcC---CCCC----hhhhhhhhh-CCcceEEEEEcH-HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCH---
Confidence 111 1222 458999999 899999999854 444443321 1122357788887777664 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc-------cCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE-------KTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~-------~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
.++.++..+..++.+.+.+.+.++.......|+++|++++..... .......++++.+++ +||.+.|+..
T Consensus 323 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~- 399 (427)
T 3fq8_A 323 -YEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF- 399 (427)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT-
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC-
Confidence 222222222223334444444454444445678999988642100 011112356666664 5999998753
Q ss_pred CCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 394 QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
..+|+++. .+++++++++++|++++++
T Consensus 400 -----~r~~~~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 -----EAGFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -----SCEECCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEeeCc-CCHHHHHHHHHHHHHHHHh
Confidence 23555544 3999999999999999864
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=234.35 Aligned_cols=341 Identities=9% Similarity=0.029 Sum_probs=213.0
Q ss_pred CCc--cccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 36 NPG--GVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 36 ~~~--~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+ .+||+..+ .|.++ .+.+.+.+.+.-+. +. ......|++ ....+|++.+++++. .
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~-------~~-~~~~~~~~~-~~~~~L~e~la~~~~--------~ 133 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------MN-HVMFGGLTH-EPAARLAKLLVDITP--------A 133 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-------CS-CCCSSSEEC-HHHHHHHHHHHHHSS--------T
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh-------cc-CccccccCC-HHHHHHHHHHHHhCC--------C
Confidence 455 78998766 46664 46666655542100 00 000112221 223455555555542 3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC-------CC-CeEEEcCCCccchHHHHhhhCC-------------cEEEEEeccCC
Q 011801 110 DPDRIVMGGGATGANELIMFCLAN-------PG-DAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCDIS 168 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~-------~G-d~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~~ 168 (477)
+.++|++|+|+++|++.+++.+.. +| +.|++.+|+|+++........+ ..+..++.+..
T Consensus 134 ~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (457)
T 3tfu_A 134 GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR 213 (457)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS
T ss_pred CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc
Confidence 467999999999999999988754 55 5899999999876544332211 11222332221
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITN-PSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n-P~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.....|+++|++++++. ..++++|++.. ++||+|.+. +.+.+++|.++|+++|++||+||+|.++...+..+ ..
T Consensus 214 ~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~-a~ 289 (457)
T 3tfu_A 214 DYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AA 289 (457)
T ss_dssp SCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-TH
T ss_pred ccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh-Hh
Confidence 11124788999888753 22677777777 789999876 77789999999999999999999999865544432 22
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-------hcccCCCchHHHHHHHHhcCChhhH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-------MSSFGLVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-------~~~~~~vs~~~q~~~~~~L~~~~~~ 318 (477)
. ... ..++ ++ ||||.+| .| +|+||++++++ +.+.+.. .......+++++.++.+.|+..+-
T Consensus 290 ~-~~~---~~pd-ii---t~sK~l~-gG~~~lG~v~~~~~-i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~- 358 (457)
T 3tfu_A 290 D-HAG---VSPD-IM---CVGKALT-GGYLSLAATLCTAD-VAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG- 358 (457)
T ss_dssp H-HHT---CCCS-EE---EECGGGG-TTSSCCEEEEEEHH-HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT-
T ss_pred H-hcC---CCce-EE---EEChhhh-CCCcceEEEEEcHH-HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh-
Confidence 2 111 1223 22 9999997 56 69999999554 4444431 112223677888877777652110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ 394 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~ 394 (477)
+...++++++.+++.+.|+++ ++....+. |+|+|++++...+ ..++.+.++++ ||.++|.
T Consensus 359 ----~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~~------~~~~~~~l~~~-Gv~v~~~---- 422 (457)
T 3tfu_A 359 ----QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPVD------LAVATPAALDR-GVWLRPF---- 422 (457)
T ss_dssp ----SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCCC------HHHHHHHHHHT-TEECCCB----
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCccc------HHHHHHHHHHC-CeEEEec----
Confidence 112333444555555656543 33333333 5788898874311 23566777655 9999874
Q ss_pred CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 395 CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 395 ~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++|+++... +++++++++++|++++++.
T Consensus 423 ---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 423 ---RNLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 25899997654 9999999999999999763
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=230.36 Aligned_cols=331 Identities=15% Similarity=0.092 Sum_probs=204.2
Q ss_pred CCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||+..+. +.+ +.+.+.+.+.+.-+... .....|+ .....++++.++++++ +
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~---------~~~~~~~-~~~~~~l~~~la~~~g----------~ 122 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT---------ICSRAFF-SVPLGICERYLTNLLG----------Y 122 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS---------CCCTTSE-EHHHHHHHHHHHHHHT----------C
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC---------CccCCcC-CHHHHHHHHHHHhhcC----------C
Confidence 345678987754 344 34556666655311000 0001131 1124566666666653 5
Q ss_pred CcEEEeCChHHHHHHHHHHhc---------CCC-CeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCC
Q 011801 112 DRIVMGGGATGANELIMFCLA---------NPG-DAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISN 169 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~---------~~G-d~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~ 169 (477)
++|++++|+++|++.++.++. .+| |.|++.+|+|+++...+....| .+++.++.
T Consensus 123 ~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---- 198 (433)
T 1z7d_A 123 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY---- 198 (433)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT----
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC----
Confidence 799999999999999998753 467 9999999999876543222213 23444442
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.|+++|+++++. .++++| +++| +|++|.+ ++.+.+++|.++|+++|++||+||+|.++...+..+ ..
T Consensus 199 ---~d~~~le~~l~~-----~~~~~v-i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~~- 267 (433)
T 1z7d_A 199 ---DDLEALEEELKD-----PNVCAF-IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CV- 267 (433)
T ss_dssp ---TCHHHHHHHHTS-----TTEEEE-EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GG-
T ss_pred ---CCHHHHHHHhCC-----CCEEEE-EEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch-hh-
Confidence 278999988841 267765 4556 5678975 688899999999999999999999998754444321 11
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVE 324 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~ 324 (477)
+... ..++ + .||||.+| +| +|+||++++++ +.+.+... ......+++++.++.+.|+..+ + .+
T Consensus 268 ~~~~---~~~d--i--~t~sK~l~-~G~~~~G~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~ 333 (433)
T 1z7d_A 268 HHYN---VKPD--V--ILLGKALS-GGHYPISAVLANDD-IMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N--EK 333 (433)
T ss_dssp GGGT---CCCS--E--EEECGGGG-TTSSCCEEEEECHH-HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H--TT
T ss_pred HhcC---CCCC--E--EEECcccc-CCCCCeEEEEECHH-HHhhhccccccccCCCCHHHHHHHHHHHHHHH---h--cc
Confidence 1111 1223 2 28999999 89 99999999654 44333221 1112357777877777765321 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhC--CCeE--ecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 325 TSKRLAKRHHNFTKGLEQV--GINC--LKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 325 ~~~~l~~r~~~l~~~L~~~--gi~~--~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
..++++++++++.+.|+++ +++. .....|+|+|++++... . ...++++.+++ .||.+.|+ ++++
T Consensus 334 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~--~---~~~~~~~~l~~-~Gv~v~~~------~~~~ 401 (433)
T 1z7d_A 334 LCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL--V---NVLDICLKLKE-NGLITRDV------HDKT 401 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT--C---CHHHHHHHHHH-TTEECCEE------TTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh--h---HHHHHHHHHHH-CCeEEecC------CCCE
Confidence 3445556666676666654 3321 12234678999887420 0 12256677765 59999885 2578
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 401 FRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 401 ~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|++++. .+++++++++++|++++++.
T Consensus 402 iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 402 IRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 9998875 49999999999999998753
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=229.43 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=218.0
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc-----EEEeCChHHHHHHHHHHhcC--------CC-----CeEEEcC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR-----IVMGGGATGANELIMFCLAN--------PG-----DAFLVPS 142 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~-----i~~t~G~t~al~~i~~~l~~--------~G-----d~vlv~~ 142 (477)
.|..+.+..++++++++++.+..| +++++ +++|+|+|+|+.+++.++.+ +| +.|++++
T Consensus 72 ~~~~~~~~~~l~~~~~~~la~l~g----~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~ 147 (452)
T 2dgk_A 72 DKEEYPQSAAIDLRCVNMVADLWH----APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP 147 (452)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT----CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS
T ss_pred ChhhChhHHHHHHHHHHHHHHHhC----CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC
Confidence 355556778889999888888776 34444 99999999999999888754 55 5899999
Q ss_pred CCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh
Q 011801 143 PYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 143 P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
+|..+...++.. |++++.++++. ++|.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|++
T Consensus 148 -~h~~~~~~~~~~-G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~ 215 (452)
T 2dgk_A 148 -VQICWHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEF---PQPLHDALDK 215 (452)
T ss_dssp -CCHHHHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCC---HHHHHHHHHH
T ss_pred -CcHHHHHHHHHc-CceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHH
Confidence 999898888877 99999999874 4689999999998864 7899999999999999988 7788888888
Q ss_pred c------CeEEEeccccccccc---CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHH
Q 011801 223 K------NIHLVCDEIYAATVF---SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGR 292 (477)
Q Consensus 223 ~------~~~lI~De~y~~~~~---~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~ 292 (477)
+ |+++++|++|++++. ..+..... . ..+...++.|++| +++.|.++||+++.++.. ...+.
T Consensus 216 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~----~----~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~~ 286 (452)
T 2dgk_A 216 FQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF----R----LPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQELV 286 (452)
T ss_dssp HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST----T----STTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGGC
T ss_pred HhhccCCCCcEEEEcccHHHHHHhhCccchhhc----C----CCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHhc
Confidence 5 999999999987532 22110110 0 1244567789999 556999999999976532 22221
Q ss_pred HhcccC-----------CC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----Cce
Q 011801 293 KMSSFG-----------LV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAG 353 (477)
Q Consensus 293 ~~~~~~-----------~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g 353 (477)
....+. .. ....|+++...+.. +.+++..+++.++++++.+.|++. ++++..+ ...
T Consensus 287 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~ 361 (452)
T 2dgk_A 287 FNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGR-----EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGI 361 (452)
T ss_dssp EEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBS
T ss_pred cCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCe
Confidence 111111 00 23445555444422 235667778888899999999988 4877643 233
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
.++.++++... ..... ..++.+.|. +.||.++...... ..+.+++|++++.. ++++++.+++.|+++++..+
T Consensus 362 ~~v~f~~~~~~-~~~~~-~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 362 PAVCFKLKDGE-DPGYT-LYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp SEEEEEECTTC-CCSCC-HHHHHHHHH-HTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcc-cccCC-HHHHHHHHH-hcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556665310 00011 124666665 4598654321111 12356899999864 78999999999999887643
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-25 Score=222.90 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=194.1
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
...++++++|++++ . ++.++++++++|+..++.+++++||.|+++.|+|+++... ++.. |++++.
T Consensus 60 ~~~~l~~~la~~~g--------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 128 (389)
T 3acz_A 60 TVEQFEEMVCSIEG--------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEE
Confidence 46789999999986 2 2566677778999999999999999999999999987655 3545 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++. .|++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+...+. .
T Consensus 129 v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~- 190 (389)
T 3acz_A 129 IDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-K- 190 (389)
T ss_dssp ECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-C-
T ss_pred ECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-C-
Confidence 885 278888888754 7899999999999999998 888999999999999999999865332 1
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHhc-ccC-CCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKMS-SFG-LVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~~-~~~-~vs~~~q~~~~~~L~~~~~~~ 319 (477)
++ ..+.++++.|+||.+|.+|.|+ ||++++++.+.+.++... .++ ..++..++++...|+...
T Consensus 191 --~~---------~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--- 256 (389)
T 3acz_A 191 --PL---------ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP--- 256 (389)
T ss_dssp --GG---------GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH---
T ss_pred --cc---------ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH---
Confidence 11 1245588999999999999998 999997734444443332 233 356666776666665422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC---------------CeEec---CCceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVG---------------INCLK---SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~g---------------i~~~~---~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
...++..+..+.+.+.|++.+ +.+.. ...|.++.+.++. . +....+++
T Consensus 257 ----~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~--------~~~~~~l~ 322 (389)
T 3acz_A 257 ----IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--F--------EAAKKLME 322 (389)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--H--------HHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--H--------HHHHHHHH
Confidence 122233344455555555432 11111 1124466677753 1 12455677
Q ss_pred hcCeEEeC---C------CCCCC---------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 382 DVKLNVSP---G------SSFQC---------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 382 ~~gI~v~p---g------~~f~~---------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+.||.+.+ | ..+.. ..++++|++++. ++.+.+++.|.++++
T Consensus 323 ~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp TCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred hCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 78988877 3 22211 125799999985 367777888888775
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=223.64 Aligned_cols=283 Identities=13% Similarity=0.144 Sum_probs=195.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v 163 (477)
..++++++|++++ . .+.|++++|+ +|+.+++.+++++||.|+++.|.|+++... ++.. |++++.+
T Consensus 116 ~~~l~~~lA~l~g--------~-~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~v 184 (445)
T 1qgn_A 116 TVVLEEKISALEG--------A-ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC--------C-CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEEe
Confidence 5689999999986 2 2456666555 999999999999999999999999987653 4445 9999988
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCe-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINI-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+.+ |+++|++++++ ++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+..
T Consensus 185 ~~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~-- 246 (445)
T 1qgn_A 185 DPA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK-- 246 (445)
T ss_dssp CSS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred CCC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 753 78999999875 66 99999999999999998 7889999999999999999998532211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhcccCC-CchHHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSFGL-VSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~~~-vs~~~q~~~~~~L~~~~~~~~ 320 (477)
+ . ..+..++++|+||.+|..| .++||++++++.+.........++. .+++..+++...++.
T Consensus 247 --~---~------~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~------ 309 (445)
T 1qgn_A 247 --A---L------ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT------ 309 (445)
T ss_dssp --T---T------TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG------
T ss_pred --c---c------ccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH------
Confidence 1 0 1234578999999998544 4799999965543333222233443 455554555444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CC-eEecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV-GI-NCLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~-gi-~~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+....+++.++.+.+.+.|++. ++ .+..+ ..|.++++.++... +.-..+... ++.
T Consensus 310 -l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~-l~~ 382 (445)
T 1qgn_A 310 -LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDA-LKI 382 (445)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHH-CSS
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHh-CCC
Confidence 2233344556677788888876 44 33322 13567888887421 111122222 222
Q ss_pred cCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
.++.++.|+.+.. ..++++||+++ .|+++.+++.|++++++
T Consensus 383 ~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 383 PYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp SEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred ceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 3677888876531 12579999998 36799999999988763
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=231.50 Aligned_cols=293 Identities=10% Similarity=0.064 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCe---EEEcCCCccchH----HHHhhhCCcEE-
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDA---FLVPSPYYAAFD----RDLSWRTGVQI- 160 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~---vlv~~P~y~~~~----~~~~~~~g~~~- 160 (477)
.++++.+|++++ .++++|++|+|+++++++++.++.++|+. |+++.|+|++.. ..++.. |+++
T Consensus 114 ~~l~~~la~~~g--------~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~-G~~~~ 184 (465)
T 3e9k_A 114 ESIVGLMKDIVG--------ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLNIE 184 (465)
T ss_dssp HHHHGGGHHHHT--------CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT-TCCHH
T ss_pred HHHHHHHHHHcC--------CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc-CCcce
Confidence 568888888876 56889999999999999999999877665 999999998743 345545 8775
Q ss_pred ---EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 161 ---VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 161 ---~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
+.+.. .++++.+|+++|++++++. +.++++|++++|+||||.+++ +++|.++|+++|+++|+|++++.
T Consensus 185 ~~~v~~~~-~~~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~-- 255 (465)
T 3e9k_A 185 ESMRMIKP-REGEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV-- 255 (465)
T ss_dssp HHEEEECC-CTTCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT--
T ss_pred eeeEEEec-CCCCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc--
Confidence 22221 2356789999999999753 237999999999999999999 78888999999999999999973
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc---------------------
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--------------------- 296 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--------------------- 296 (477)
...+ ..+.+. +..++++|++|.++....++|+++++++.+......+..
T Consensus 256 -g~~~-~~~~~~--------~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 325 (465)
T 3e9k_A 256 -GNVE-LYLHDW--------GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPG 325 (465)
T ss_dssp -TTSC-CCHHHH--------TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSS
T ss_pred -CCcC-Cchhhc--------CCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCC
Confidence 2211 232222 344788999999932233789999866543211100000
Q ss_pred -----cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------CCCeEecCC----ceEEE
Q 011801 297 -----FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ-----------VGINCLKSN----AGLFF 356 (477)
Q Consensus 297 -----~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~-----------~gi~~~~~~----~g~~~ 356 (477)
.++.+.....++.+.+...+ +..+++.++++.++++++.+.|++ .|+++..+. .|.++
T Consensus 326 ~~~~~~gt~~~~~~~a~~aal~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~ 403 (465)
T 3e9k_A 326 VCGFRISNPPILLVCSLHASLEIFK--QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQL 403 (465)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCE
T ss_pred hHHhccCCccHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEE
Confidence 01233344444444443211 112567778888888999999887 577777654 36788
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF-AN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~-~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
|+.++. ... ++.+.+. +.||.+.. ..++++|+++ .. .++++++++++.|++++++
T Consensus 404 ~~~~~~--~~~------~l~~~L~-~~Gi~v~~------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 404 TITFSV--PNK------DVFQELE-KRGVVCDK------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EEEECC--TTC------CHHHHHH-TTTEECEE------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEecC--CHH------HHHHHHH-HCCEEEec------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 888872 222 3555555 55999873 2368999998 33 4899999999999999875
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=230.33 Aligned_cols=350 Identities=10% Similarity=-0.005 Sum_probs=223.4
Q ss_pred CCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+.+.+||+..+ .|.++ .+.+.+++.+.- .....+....+..+.++++++++.+..+ .+
T Consensus 51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~ 113 (476)
T 3i5t_A 51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQA-------------MVLPYASPWYMATSPAARLAEKIATLTP----GD 113 (476)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCCCCCTTTCBCHHHHHHHHHHHTTSS----TT
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccCcccCccCCHHHHHHHHHHHhcCC----CC
Confidence 345668998766 56664 466666665521 1122222224567889999999987654 35
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhCC--------------cEEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRTG--------------VQIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~g--------------~~~~~v~~~~~ 168 (477)
.++|++++|+++|++.+++.+.. .++.|++.+|+|+++...+....| ...++.|....
T Consensus 114 ~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 193 (476)
T 3i5t_A 114 LNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRH 193 (476)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGG
T ss_pred cCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccc
Confidence 67999999999999999988753 357999999999987654432212 23333332211
Q ss_pred CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 169 NNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 169 ~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
+ +..+ +++|++++++.. ..++++|+++.++|++|. +.+++.+++|.++|+++|++||+||+|.++...
T Consensus 194 ~-~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 194 A-GNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp C-TTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred c-CCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 1 2223 678888876421 125777777766788885 788999999999999999999999999986555
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh---------cccCCCchHHHHHHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM---------SSFGLVSSQTQYLLA 309 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~---------~~~~~vs~~~q~~~~ 309 (477)
+.. .+..... +..++ + .+|||.+| .| +|+|++++++ .+.+.+... ...+..+++++.++.
T Consensus 271 G~~-~~~~~~~---~v~pd--i--~t~sK~l~-~G~~plg~v~~~~-~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~ 340 (476)
T 3i5t_A 271 GEW-FASEKVF---GVVPD--I--ITFAKGVT-SGYVPLGGLAISE-AVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340 (476)
T ss_dssp SSS-CHHHHTT---CCCCS--E--EEECGGGG-TTSSCCEEEEECH-HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHH
T ss_pred cCc-eeeeccc---CCCcc--h--hhhhhhhc-CCCcCeEEEEECH-HHHHHHhcCCcccccccccCCCCcCHHHHHHHH
Confidence 543 2222111 11233 2 27899998 69 9999999954 455544321 122336788888888
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---C-CeEecCCceEEEEeeccchhhc-cCch----HHHHHHHHHH
Q 011801 310 SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---G-INCLKSNAGLFFWMDLRHLLKE-KTLE----GEIALWRTIV 380 (477)
Q Consensus 310 ~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---g-i~~~~~~~g~~~~~~l~~~~~~-~~~~----~e~~l~~~ll 380 (477)
+.|+..+ + ++..++++++.+++.+.|+++ + +....+ .|+|+++++...... ..+. ...++++.++
T Consensus 341 aaL~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (476)
T 3i5t_A 341 ANIELME--R---EGIVDQAREMADYFAAALASLRDLPGVAETRS-VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCF 414 (476)
T ss_dssp HHHHHHH--H---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--h---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCceeEEEEecCccccccccchhHHHHHHHHHHH
Confidence 8775321 1 123344455555666666543 2 333343 456778887642111 1111 1234566666
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+ .||.+.|. + +++||+... .+++++++++++|++++++..
T Consensus 415 ~-~Gv~v~~~------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 415 E-LGLIVRPL------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp H-TTEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred H-CCCEEEec------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 59999984 1 689999653 499999999999999997643
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-25 Score=223.60 Aligned_cols=299 Identities=15% Similarity=0.184 Sum_probs=202.6
Q ss_pred ccCCCCC----cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhh
Q 011801 81 IFQDYHG----LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWR 155 (477)
Q Consensus 81 ~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~ 155 (477)
.|++..| ..++++.++++++ .+ ++++++++++|+.+++.++ .++||.|+++.|+|+.+...++..
T Consensus 33 ~~~~~~g~~~l~~~l~~~la~~~g--------~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 102 (418)
T 2c81_A 33 ISGYWTGEESMERKFAKAFADFNG--------VP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNV 102 (418)
T ss_dssp TTSBCCSSCCHHHHHHHHHHHHHT--------CS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT
T ss_pred ccCcccCCHHHHHHHHHHHHHHhC--------CC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHc
Confidence 4666667 4566666666654 22 5667777899999999999 899999999999999999888876
Q ss_pred CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc
Q 011801 156 TGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA 235 (477)
Q Consensus 156 ~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~ 235 (477)
|.+++.++++. ++|.+|+++|++++++ ++++|+++ ||||...+ +++|.++|+++|++||+||+|+.
T Consensus 103 -g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~ 168 (418)
T 2c81_A 103 -NALPVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSH 168 (418)
T ss_dssp -TCEEEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCT
T ss_pred -CCEEEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccc
Confidence 99999999864 4688999999988753 78888765 58998866 88889999999999999999986
Q ss_pred cc-cCCCCcccHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccCC-------------
Q 011801 236 TV-FSSPKFTSVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL------------- 299 (477)
Q Consensus 236 ~~-~~~~~~~s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~------------- 299 (477)
.. +++... .. ..+ +++.|| ||.+|. | |+||++++++.+.+.++.....+.
T Consensus 169 ~~~~~~~~~---~~-------~~~--~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (418)
T 2c81_A 169 GSVWNNQRA---GT-------IGD--IGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGD 234 (418)
T ss_dssp TCEETTEET---TS-------SSS--EEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTC
T ss_pred cCccCCEec---cc-------ccc--eEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccch
Confidence 54 433211 10 112 567788 999995 8 999999976665554443322110
Q ss_pred C--------------chHHHHHHH-HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cCCc-eEEEE----
Q 011801 300 V--------------SSQTQYLLA-SMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KSNA-GLFFW---- 357 (477)
Q Consensus 300 v--------------s~~~q~~~~-~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~~~-g~~~~---- 357 (477)
. -...+.++. ..+. .+++..++.++.++++.+.|.++ |+++. .+.+ +.+.|
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 307 (418)
T 2c81_A 235 MQLVKKGDIQGSNYCLSEFQSAILLDQLQ-------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYV 307 (418)
T ss_dssp BSEEECCSSCCCBCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEE
T ss_pred hhccccccccCcCCCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEE
Confidence 0 011122211 1121 13444555566678888899887 77776 3444 33333
Q ss_pred eeccchhhccCchHHHHHHHHHHHhcCeE---EeCCCCCCC---------------------------CC-------CCE
Q 011801 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLN---VSPGSSFQC---------------------------TE-------PGW 400 (477)
Q Consensus 358 ~~l~~~~~~~~~~~e~~l~~~ll~~~gI~---v~pg~~f~~---------------------------~~-------~~~ 400 (477)
+.++.... .... ..++.+.+.+++||. +++|..... .- .+.
T Consensus 308 ~~~~~~~~-~~~~-~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (418)
T 2c81_A 308 FRFDPVKF-GGLN-ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQS 385 (418)
T ss_dssp EEECGGGT-TTCC-HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHE
T ss_pred EEEccccc-cccC-HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCE
Confidence 56653100 0011 125666666555999 988752210 00 158
Q ss_pred EEEEecc-C-CHHHHHHHHHHHHHHHhh
Q 011801 401 FRVCFAN-M-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 401 ~Rl~~~~-~-~~e~l~~~l~~l~~~~~~ 426 (477)
+||++.. + ++++++.+++.|++++++
T Consensus 386 lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 386 IVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp EEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 9999953 5 899999999999999875
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=225.56 Aligned_cols=282 Identities=15% Similarity=0.112 Sum_probs=188.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~ 162 (477)
+..++|+++|++++ .+ +.++++++++|+++++. ++++||.|+++.|.|++... .++.. |++++.
T Consensus 56 ~~~~lr~~la~~~g--------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~v~~ 123 (393)
T 1n8p_A 56 NRENLERAVAALEN--------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSF 123 (393)
T ss_dssp HHHHHHHHHHHHTT--------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTT-CSCCEE
T ss_pred hHHHHHHHHHHHhC--------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEE
Confidence 46899999999986 12 45555556999999999 89999999999999986544 33444 889888
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc----CeEEEeccccccccc
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK----NIHLVCDEIYAATVF 238 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~----~~~lI~De~y~~~~~ 238 (477)
++++ | ++|++++++ ++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|+...+
T Consensus 124 v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp ESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred eCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8754 5 777777643 7899999999999999998 88889999999 999999999987654
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHHHHHHHHh-cccC-CCchHHHHHHHHhcCCh
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTVVNCGRKM-SSFG-LVSSQTQYLLASMLSDD 315 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i~~~~~~~-~~~~-~vs~~~q~~~~~~L~~~ 315 (477)
. . ... .+.++++.|+||.+|.+|+|+ ||+++.++.+.+.+... ..++ ..++..+.++...+..
T Consensus 187 ~--~---~~~--------~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~- 252 (393)
T 1n8p_A 187 S--N---PLN--------FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT- 252 (393)
T ss_dssp C--C---GGG--------GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-
T ss_pred C--C---HHH--------cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-
Confidence 3 1 111 135588999999999999999 99998655555544433 2222 3455555555555543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCC--Ce-EecC---------------C--c-eEEEEeeccchhhccCchHHHH
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVG--IN-CLKS---------------N--A-GLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~g--i~-~~~~---------------~--~-g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+....+++.++.+.+.+.|.+.+ +. +..+ . . |..+++.++... ..-..
T Consensus 253 ------~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-----~~~~~ 321 (393)
T 1n8p_A 253 ------LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-----EAASK 321 (393)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-----HHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-----HHHHH
Confidence 22333445556666777776653 22 1111 1 2 567888887420 11112
Q ss_pred HHHHHHHhcCeEEeCCC----------CCCC-----------CCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 375 LWRTIVNDVKLNVSPGS----------SFQC-----------TEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~----------~f~~-----------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
+... ++..++.++.|+ .+++ ..++.+|++++.. ++++++.+.++|+++
T Consensus 322 ~l~~-l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 322 FASS-TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHH-CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhh-CCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 2222 223344555443 2221 1257999999975 566666666666654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=229.06 Aligned_cols=284 Identities=11% Similarity=0.085 Sum_probs=191.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccch-HHHHhhh-CCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAAF-DRDLSWR-TGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~-~~~~~~~-~g~~~~~v~ 164 (477)
..++|+.++++++ ++ ++++|++ |+|+++|+.+++.+++++| .+.+..+.|... ...+... .|.+++.++
T Consensus 80 ~~~~~~~la~~~g------~~-~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~ 151 (398)
T 2fyf_A 80 VGRVRSGLAELFS------LP-DGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIIT 151 (398)
T ss_dssp HHHHHHHHHHHTT------CC-TTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEE
T ss_pred HHHHHHHHHHHhC------CC-CCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEe
Confidence 3566777777665 22 3578998 9999999999999998887 223333334211 1122221 167777788
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++ .++.++.+ + ..++++|++++|+||||.+++.+++.++ +|+++|+||+|+.. . .+ .
T Consensus 152 ~~--~g~~~~~~-----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~--~-~~-~ 208 (398)
T 2fyf_A 152 SD--PGSAPEPQ-----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAG--G-LP-V 208 (398)
T ss_dssp CC--TTCCCCCC-----C------CTTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTT--T-SC-C
T ss_pred cC--CCCCCCcc-----c------cCCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccC--C-cc-c
Confidence 76 23443321 1 2378999999999999999997766654 89999999999843 1 11 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----------------------cccCCCc
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----------------------SSFGLVS 301 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----------------------~~~~~vs 301 (477)
.+ . +..+++.|+||.+|.+| ++||++++++.+.. +++. ..+++.+
T Consensus 209 ~~----~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 276 (398)
T 2fyf_A 209 DI----A------ETDAYYFAPQKNFASDG-GLWLAIMSPAALSR-IEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPA 276 (398)
T ss_dssp CG----G------GCSEEEECTTSTTCSCS-SEEEEEECHHHHHH-HHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCC
T ss_pred Cc----c------cCcEEEEecCcccCCCC-ceEEEEECHHHHHH-hhcccccCCCCCcEEehHHHhhhcccCCCCCCCC
Confidence 11 1 12367899999999775 69999996654433 2210 2234455
Q ss_pred hHHHHHHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHhhC-CCeEec--C--CceEEEEeeccchhhccCchHHHH
Q 011801 302 SQTQYLLASMLSDDEFVDNF--LVETSKRLAKRHHNFTKGLEQV-GINCLK--S--NAGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~--~~~~~~~l~~r~~~l~~~L~~~-gi~~~~--~--~~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
...+.++..+|+.. .+. +++..++++++++++.+.|++. |+++.. + .+++++|++++...+ ..+
T Consensus 277 ~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 347 (398)
T 2fyf_A 277 IATLALLAEQIDWL---VGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVD------AGT 347 (398)
T ss_dssp HHHHHHHHHHHHHH---HHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSC------HHH
T ss_pred HHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCC------HHH
Confidence 66666666666421 222 5677888889999999999988 887763 3 345589999864221 124
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+.+.++ ||.+++| +...+++++||+++. .+++++++++++|++++++
T Consensus 348 l~~~L~~~-gI~v~~g--~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 348 VAKILRAN-GIVDTEP--YRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHT-TCBCCSC--CTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CcEEecC--cccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 66666655 9999987 322336799999985 3899999999999998764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=220.85 Aligned_cols=289 Identities=10% Similarity=0.068 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh---cCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
..+..++++++|++++ . +++++|+|+++|+.+++.++ .++||.|+++.|+|+++...+... |++++
T Consensus 31 ~~~~~~l~~~la~~~~--------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~ 99 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLG--------V--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPV 99 (375)
T ss_dssp SHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEE
T ss_pred ChHHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC-CCEEE
Confidence 3457899999999996 2 28999999999999999999 899999999999999999888876 99999
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++.+ ..+|+++|++++++ ++++|++++| ||.+.+ +++|.++|+++|+++|+||+|+...+.
T Consensus 100 ~~~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-- 163 (375)
T 2fnu_A 100 FAGIKND--GNIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEY-- 163 (375)
T ss_dssp ECCBCTT--SSBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEE--
T ss_pred EeccCCC--CCCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeE--
Confidence 9998753 27899999887753 7888888876 999988 788899999999999999999743211
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEe-CCHHHHHHHHHhcccC------------------CC
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYS-FNDTVVNCGRKMSSFG------------------LV 300 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~-~~~~i~~~~~~~~~~~------------------~v 300 (477)
.... +. ..+ .+++.||| |.+|. | +|++++ +++.+.+.++.....+ .+
T Consensus 164 ~~~~----~~----~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (375)
T 2fnu_A 164 QNKK----VG----GFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRL 231 (375)
T ss_dssp TTEE----TT----SSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCC
T ss_pred CCee----cc----ccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCC
Confidence 1011 11 112 36778888 99984 6 788877 4465655444432111 12
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC-----ceEEEEeeccchhhccCchHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN-----AGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~-----~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
+.+...+....+ + .+++..++++++++++.+.|+++ |+.+..+. .++++|+.++... .....+
T Consensus 232 ~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 300 (375)
T 2fnu_A 232 NEIQSALGLSQL---K----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKKL 300 (375)
T ss_dssp CHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHHH
T ss_pred CHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc----cchHHH
Confidence 222222221111 1 24455667778889999999987 77766541 2345577776320 001224
Q ss_pred HHHHHHHhcCeEEeCCCCCCCC---------------------CCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCT---------------------EPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~---------------------~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.+.+. +.||.++.+ |.+. ..+++||+++.. ++++++.++++|++++++
T Consensus 301 l~~~L~-~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 301 ILESLH-KRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHHH-HTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 666654 569999832 2110 126899999753 899999999999999875
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=219.19 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=204.1
Q ss_pred cCCCCC--cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 82 FQDYHG--LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 82 Y~~~~G--~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
|.+..| ..++|+++|++++ .++|++|+|+++|+.+++.++ .++||.|+++.|+|+++...+... |+
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~----------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 94 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KA 94 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TC
T ss_pred CccCCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CC
Confidence 555557 8999999999996 268999999999999999999 899999999999999999888876 99
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-ccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA-ATV 237 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~-~~~ 237 (477)
+++.++++ .+|.+|+++|++++++. ..++++|++++ |||...+ +++|.++|+++|+++|+||+|+ +..
T Consensus 95 ~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 163 (394)
T 1o69_A 95 KPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGSF 163 (394)
T ss_dssp EEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred EEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccce
Confidence 99999987 46889999999988641 11578888885 8997766 8888899999999999999998 444
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC----------------Cc
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL----------------VS 301 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~----------------vs 301 (477)
+.+....+ ..+ +.+.||||..+++|.|+||++++++.+.+.++....++. .+
T Consensus 164 ~~~~~~~~----------~~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 231 (394)
T 1o69_A 164 YKNKALGT----------FGE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLS 231 (394)
T ss_dssp ETTEETTS----------SSS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCC
T ss_pred eCCccccc----------ccC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcC
Confidence 43321111 112 345566433344577999999976666555554433221 11
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceE-EEEeeccchhh-----------
Q 011801 302 SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGL-FFWMDLRHLLK----------- 365 (477)
Q Consensus 302 ~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~-~~~~~l~~~~~----------- 365 (477)
.....++...+ ++ +++..+++++.++++.+.|.+. +++.++. +++ ++++.++....
T Consensus 232 ~~~aa~~l~~l---~~----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 303 (394)
T 1o69_A 232 NVLGAIGVAQM---EV----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINI 303 (394)
T ss_dssp HHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEEC
T ss_pred HHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccc
Confidence 12222221112 22 3445677788888999999887 6555432 233 35676653100
Q ss_pred ---c--cCchHHHHHHHHHHHhcCeEEeCCCCCC---C--CC--------------CCEEEEEeccCCHHHHHHHHHHHH
Q 011801 366 ---E--KTLEGEIALWRTIVNDVKLNVSPGSSFQ---C--TE--------------PGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 366 ---~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~---~--~~--------------~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
. ... ...++.+.+ .+.||.+++|..+. + .. .+..|.+....++++++.+++.|+
T Consensus 304 ~~~~~~~~~-~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~ 381 (394)
T 1o69_A 304 SQKNITLHP-KISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLIL 381 (394)
T ss_dssp CCCCCCCCH-HHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccccccccc-CHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHH
Confidence 0 001 122455555 45699999985331 0 00 122333433359999999999999
Q ss_pred HHHhh
Q 011801 422 AFVQQ 426 (477)
Q Consensus 422 ~~~~~ 426 (477)
++++.
T Consensus 382 ~~~~~ 386 (394)
T 1o69_A 382 KSIKA 386 (394)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 98754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=220.50 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=194.5
Q ss_pred ccCCC--CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hh
Q 011801 81 IFQDY--HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SW 154 (477)
Q Consensus 81 ~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~ 154 (477)
.|... ....++++.++++++ .+++++++|+++|+..++.+++++||.|+++.|.|++....+ +.
T Consensus 49 ~y~~~~~~~~~~l~~~la~~~g----------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 49 VYARQKDPTAKALEERLKALEG----------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred CcCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 45443 347889999999986 248999999999999999999999999999999998765543 33
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |++++.++. |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+
T Consensus 119 ~-g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 119 M-GVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp T-TCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred c-CCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 4 899988874 37888887753 7899999999999999998 8899999999999999999998
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC-H--------------------------HH
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN-D--------------------------TV 287 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~-~--------------------------~i 287 (477)
...+.. .+. ..+.++++.|+||.++.||.|+|++++.+ + .+
T Consensus 181 ~~~~~~---~~~---------~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (412)
T 2cb1_A 181 AAGALC---RPL---------AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCF 248 (412)
T ss_dssp TTTTSC---CGG---------GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHH
T ss_pred cccccC---Ccc---------ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHH
Confidence 541111 111 12456889999999988999999988655 2 22
Q ss_pred HHHHHHh--cccC-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cC------------
Q 011801 288 VNCGRKM--SSFG-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KS------------ 350 (477)
Q Consensus 288 ~~~~~~~--~~~~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~------------ 350 (477)
...++.. ..++ ..++...+++...++. +.+..++..+..+.+.+.|.+. ++... .+
T Consensus 249 ~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~ 321 (412)
T 2cb1_A 249 PERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR 321 (412)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence 2222222 1122 1234443433333322 2233344556677788888876 67633 11
Q ss_pred ----CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC-------CCCC-----------------CCCEEE
Q 011801 351 ----NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS-------FQCT-----------------EPGWFR 402 (477)
Q Consensus 351 ----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~-------f~~~-----------------~~~~~R 402 (477)
..+.++.+.+ . +. +....++++.||.+ .|+. .+|. .++.+|
T Consensus 322 ~~~~~~~~iv~~~~-~--~~-------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR 390 (412)
T 2cb1_A 322 KYLASGGPILTLDL-G--DL-------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVR 390 (412)
T ss_dssp HHCSSSCSEEEEEC-S--SH-------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEE
T ss_pred HhCCCCceEEEEEe-C--CH-------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEE
Confidence 2344666776 3 11 23455667789999 7742 1120 167999
Q ss_pred EEeccC-CHHHHHHHHHHHH
Q 011801 403 VCFANM-DDDTLQVALNRIA 421 (477)
Q Consensus 403 l~~~~~-~~e~l~~~l~~l~ 421 (477)
++++.. ++++++.+++.|+
T Consensus 391 ~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 391 VSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp EECCSSCHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHh
Confidence 999875 5667777666665
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=226.57 Aligned_cols=335 Identities=14% Similarity=0.108 Sum_probs=207.1
Q ss_pred CCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. +.+ +.+.+.+.+.+.-+ .+ ....|+. .-..++++.+++++. .
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~------~~-----~~~~~~~-~~~~~l~~~la~~~~---------~ 111 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA------RG-----WLYGAPG-EAEVLLAEKILGYVK---------R 111 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH------TC-----SCCSSCC-HHHHHHHHHHHHHHC---------T
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH------hC-----CCCCCCC-HHHHHHHHHHHHhCC---------C
Confidence 3455679998776 444 34666666655211 00 0112211 112445555555441 3
Q ss_pred CCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhh-------------hCCc------EEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSW-------------RTGV------QIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~-------------~~g~------~~~~v~~~~~ 168 (477)
+++|++++|+++|++.+++. +. +++.|++.+|+|+++...+.. ..|+ ++++++.
T Consensus 112 ~~~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~--- 187 (434)
T 2epj_A 112 GGMIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY--- 187 (434)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC---
Confidence 68999999999999999987 54 457888999999876442211 1132 2455553
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|+++|++++++. +.++++ ++++| +||||.+. +.+.+++|.++|+++|++||+||+|.++ ..++. ..
T Consensus 188 ----~d~~~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~- 256 (434)
T 2epj_A 188 ----NDVEALERVFAEY---GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE-GA- 256 (434)
T ss_dssp ----TCHHHHHHHHHHH---GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT-HH-
T ss_pred ----CCHHHHHHHHHhC---CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc-hh-
Confidence 2789999988753 125655 55556 46799876 6999999999999999999999999975 32322 11
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----cccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----SSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.+... ..++ +.||||.+| +|+|+||++++++ +.+.+... ...+..+++++.++.+.|+..+ +
T Consensus 257 ~~~~~---~~~d----i~s~sK~l~-~G~~~G~v~~~~~-~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~---~- 323 (434)
T 2epj_A 257 QGYFN---IEGD----IIVLGKIIG-GGFPVGAVAGSRE-VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE---E- 323 (434)
T ss_dssp HHHHT---CCCS----EEEEEGGGG-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH---H-
T ss_pred hHHhC---CCCC----eeeecchhc-CCcceeeeeecHH-HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH---h-
Confidence 11211 1223 348999999 5999999999654 44433321 1112367778877777765321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccch-h------hccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHL-L------KEKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~-~------~~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
++..++++++++++.+.|+++ ++....+..|+|+|++++.. . .........++++.++ ++||.+.||
T Consensus 324 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 401 (434)
T 2epj_A 324 -EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPS 401 (434)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSS
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEecc
Confidence 123344555556666666543 55432233457889998741 0 0001112235667666 469999998
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 391 SSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.. .++|+++. .+++++++++++|++++++.
T Consensus 402 ~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 402 NL------EAVFTGLP-HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp TT------SCEECCTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred CC------CcEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 42 24777754 49999999999999998763
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=226.76 Aligned_cols=350 Identities=10% Similarity=0.032 Sum_probs=214.2
Q ss_pred CCCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccc-ccCCCCCcHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIA-IFQDYHGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+.+||+..+ .|.++ .+.+.+++.+.- .... .|....+..+.+.++++.+.+..+
T Consensus 51 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~lae~l~~~~~---- 113 (472)
T 3hmu_A 51 DSEGEEILDAMAGLWCVNIGYGRDELAEVAARQM-------------RELPYYNTFFKTTHVPAIALAQKLAELAP---- 113 (472)
T ss_dssp ETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCSSSSEECHHHHHHHHHHHHHSC----
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----
Confidence 3445678999776 56664 466666655421 1111 122222334556666666655433
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcC--------CCCeEEEcCCCccchHHHHhhhCCc-----------EEEEEeccC--
Q 011801 109 FDPDRIVMGGGATGANELIMFCLAN--------PGDAFLVPSPYYAAFDRDLSWRTGV-----------QIVPVHCDI-- 167 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~--------~Gd~vlv~~P~y~~~~~~~~~~~g~-----------~~~~v~~~~-- 167 (477)
.+.++|++++|+++|++.+++.+.. +++.|++.+|+|+++...+....|. .+..++.+.
T Consensus 114 ~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~ 193 (472)
T 3hmu_A 114 GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWW 193 (472)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccc
Confidence 3467999999999999999988764 4689999999999876554433221 233344221
Q ss_pred C-CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 168 S-NNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 168 ~-~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
. +++ .+ +++|++++++.. ..++++|++..++|++|.+. +++.+++|.++|+++|++||+||+|.++.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg 270 (472)
T 3hmu_A 194 AEGGD-MDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFG 270 (472)
T ss_dssp HHCTT-CCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cCCcc-cCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCc
Confidence 0 111 23 677888776421 12456555554466777655 88899999999999999999999999865
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh----cccCCCchHHHHHHHHhcC
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM----SSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~----~~~~~vs~~~q~~~~~~L~ 313 (477)
..+..+ .. +... ..++ + .+|||.+|..|+|+|++++++ .+.+.+... ...+..++++|.++.+.|+
T Consensus 271 r~G~~~-a~-~~~~---v~pd-i---~t~sK~l~gg~~plG~v~~~~-~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~ 340 (472)
T 3hmu_A 271 RTGNWF-GT-QTMG---IRPH-I---MTIAKGLSSGYAPIGGSIVCD-EVAHVIGKDEFNHGYTYSGHPVAAAVALENLR 340 (472)
T ss_dssp TTSSSC-HH-HHHT---CCCS-E---EEECGGGTTTSSCCEEEEEEH-HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH
T ss_pred ccCccc-hh-HHhC---CCCc-e---eeechhhhcCCcceEEEEECH-HHHHhcccCCccccCCCCCCHHHHHHHHHHHH
Confidence 554432 22 2221 1233 2 268999985559999999954 455544311 1123367888888888775
Q ss_pred ChhhHHHHHHHHHHHHH-HHHHHHHHHHhh---CC-CeEecCCceEEEEeeccchhhcc-Cc-----hHHHHHHHHHHHh
Q 011801 314 DDEFVDNFLVETSKRLA-KRHHNFTKGLEQ---VG-INCLKSNAGLFFWMDLRHLLKEK-TL-----EGEIALWRTIVND 382 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~-~r~~~l~~~L~~---~g-i~~~~~~~g~~~~~~l~~~~~~~-~~-----~~e~~l~~~ll~~ 382 (477)
..+- +...++++ ++.+++.+.|++ .+ +....+. |+|+++++....... .+ ....++++.+++
T Consensus 341 ~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 413 (472)
T 3hmu_A 341 ILEE-----ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIV-GMMASIALTPNKASRAKFASEPGTIGYICRERCFA- 413 (472)
T ss_dssp HHHH-----TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEE-TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-
T ss_pred HHHH-----hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-CceEEEEEecCccccccccchhHHHHHHHHHHHHH-
Confidence 3210 11223333 444445444443 32 3334443 467778776321111 00 112346666665
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.||.++|+. +++||+... .+++++++++++|++++++.
T Consensus 414 ~Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 414 NNLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TTBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999862 689999654 39999999999999998763
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=222.84 Aligned_cols=332 Identities=14% Similarity=0.080 Sum_probs=207.3
Q ss_pred CCCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccC
Q 011801 35 QNPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFD 110 (477)
Q Consensus 35 ~~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~ 110 (477)
.+...+||++.+. |.+ +++.+.+.+.+.- +....|. +..++++++++.+.+..+ .
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~---~~~~~~~~l~~~l~~~~~-----~ 107 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETL-------------ERGLTFG---APSPLEVALAKKVKRAYP-----F 107 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------HTCSCCS---SCCHHHHHHHHHHHHHCT-----T
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHH-------------HhCCCCC---CCCHHHHHHHHHHHHhCC-----C
Confidence 3445678998776 555 3466666665531 1111121 234555666666554432 4
Q ss_pred CCcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhhh-------------CCc------EEEEEeccCC
Q 011801 111 PDRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSWR-------------TGV------QIVPVHCDIS 168 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~~-------------~g~------~~~~v~~~~~ 168 (477)
+++|++++|+++|++.+++. +.+ ++.|++.+|+|+++...+... .|+ +++.++.
T Consensus 108 ~~~v~~~~~g~ea~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~--- 183 (424)
T 2e7u_A 108 VDLVRFVNSGTEATMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY--- 183 (424)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT---
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC---
Confidence 78999999999999999885 554 578999999998865432211 132 2444442
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCC-cccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNP-LGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NP-tG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|+++|++++++. +.+++ +++++|+|+ ||.+. +.+.+++|.++ ++||++||+||+|.++ ..+.. ..
T Consensus 184 ----~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~--~~ 251 (424)
T 2e7u_A 184 ----NDPEGLREVLKRR---GEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG--GA 251 (424)
T ss_dssp ----TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT--HH
T ss_pred ----CCHHHHHHHHHhC---CCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh--HH
Confidence 2789999988743 12455 566788765 89765 78999999999 9999999999999976 33322 11
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.+... ..++ +.||||.+| +|+|+||++++++ +.+.+.. ....+..+++++.++.+.|+..+ +
T Consensus 252 ~~~~~---~~~d----i~s~sK~l~-~G~~~G~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~- 318 (424)
T 2e7u_A 252 TELLG---LKPD----LVTLGKILG-GGLPAAAYAGRRE-IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLE---E- 318 (424)
T ss_dssp HHHHT---CCCS----EEEECGGGG-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHH---H-
T ss_pred HHHhC---CCcc----hhhhhhhhh-CCcceEEEEEcHH-HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHH---h-
Confidence 12211 1223 239999999 6999999999654 4443332 11122367788888777775321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccchh-h------ccCchHHHHHHHHHHHhcCeEEeCC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRHLL-K------EKTLEGEIALWRTIVNDVKLNVSPG 390 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~~~-~------~~~~~~e~~l~~~ll~~~gI~v~pg 390 (477)
.++..++++++++++.+.|++ .++....+..|.|+|++++... . ........++++.++ ++||.+.||
T Consensus 319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 397 (424)
T 2e7u_A 319 NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPS 397 (424)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEecc
Confidence 123344555556666666654 3553222234568999987410 0 001112235666666 579999997
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 391 SSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 391 ~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
.. ..+|+++. .+++++++++++|++++
T Consensus 398 ~~------~~~~~~~~-~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 398 NF------EAAFLSVA-HREEDVEKTLEALRKAL 424 (424)
T ss_dssp SS------SCEECCTT-CCHHHHHHHHHHHHHHC
T ss_pred CC------CceEeecc-CCHHHHHHHHHHHHHhC
Confidence 52 24777754 59999999999998763
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=225.20 Aligned_cols=332 Identities=10% Similarity=0.052 Sum_probs=202.3
Q ss_pred CCcccccccccc--ccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC
Q 011801 36 NPGGVIQLGLAE--NQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP 111 (477)
Q Consensus 36 ~~~~~i~l~~~~--n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~ 111 (477)
+...+||++.+. +.+ +++.+.+.+.+.-+ ....| .+..++++++++++.+..+ ++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~-------------~~~~~---~~~~~~~~~la~~l~~~~~-----~~ 113 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-------------HGVQY---AASHPLEVRWAERIVAAFP-----SI 113 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT-------------TTCSS---CSSCHHHHHHHHHHHHHCT-----TC
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHH-------------hCCCC---CCCCHHHHHHHHHHHhhCC-----CC
Confidence 345678997775 444 44666666655311 11122 2356899999999987642 47
Q ss_pred CcEEEeCChHHHHHHHHHH---hcCCCCeEEEcCCCccchHHHHhhhC----------CcE------EEEEeccCCCCcc
Q 011801 112 DRIVMGGGATGANELIMFC---LANPGDAFLVPSPYYAAFDRDLSWRT----------GVQ------IVPVHCDISNNFK 172 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~---l~~~Gd~vlv~~P~y~~~~~~~~~~~----------g~~------~~~v~~~~~~~f~ 172 (477)
++|++|+|+++|++.++++ +.++ +.|++.+|+|+++...+.... |+. ++.++.
T Consensus 114 ~~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 185 (453)
T 2cy8_A 114 RKLRFTGSGTETTLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------- 185 (453)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT-------
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------
Confidence 8999999999999999987 6654 678888899987654332111 221 222321
Q ss_pred cCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh
Q 011801 173 ITREALEAAYERAQEASINIKGLIITNPS-NPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI 250 (477)
Q Consensus 173 i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~ 250 (477)
.|+++|++++++. +.++++ ++++|+ ||||.+. +++++++|.++|++||++||+||+|.++ ..+.. ... +..
T Consensus 186 ~d~~~le~~l~~~---~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~-~~~ 258 (453)
T 2cy8_A 186 DDIEGMREVFANH---GSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH-GMQ-ALL 258 (453)
T ss_dssp TCHHHHHHHHHHH---GGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT-HHH-HHH
T ss_pred CCHHHHHHHHHhc---CCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch-hhh-HHh
Confidence 2789999988753 125665 556664 6799765 7999999999999999999999999976 43322 121 111
Q ss_pred hhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-------hcccCCCchHHHHHHHHhcCC-hhhHHHHH
Q 011801 251 QEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-------MSSFGLVSSQTQYLLASMLSD-DEFVDNFL 322 (477)
Q Consensus 251 ~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-------~~~~~~vs~~~q~~~~~~L~~-~~~~~~~~ 322 (477)
. ..++ +.||||.+| +|+|+||++++++ +.+.+.. ....+..+++++.++.+.|+. . .
T Consensus 259 ~---~~~d----i~s~sK~l~-~G~~~G~v~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~----- 323 (453)
T 2cy8_A 259 D---VQPD----LTCLAKASA-GGLPGGILGGRED-VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E----- 323 (453)
T ss_dssp T---CCCS----EEEEEGGGG-TTSSCEEEEECHH-HHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-----
T ss_pred C---CCCc----EEEEChhhh-CCcceEEEechHH-HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-----
Confidence 1 1223 238999999 6999999999654 4333322 111223677888777766653 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CCCeEecCCceEEEEeeccc-----h--hhc------cCchHHHHHHHHHHHhcCe
Q 011801 323 VETSKRLAKRHHNFTKGLEQ----VGINCLKSNAGLFFWMDLRH-----L--LKE------KTLEGEIALWRTIVNDVKL 385 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~g~~~~~~l~~-----~--~~~------~~~~~e~~l~~~ll~~~gI 385 (477)
++..++++++++++.+.|++ .++....+..|.|+|++++. . ... .......++++.+++ +||
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv 402 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGV 402 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCe
Confidence 11223344444555555543 35433223445789999874 1 000 011122357777765 599
Q ss_pred EEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 386 NVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 386 ~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+.|+ +.+|+++. .+++++++++++|++++++..
T Consensus 403 ~v~~~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 403 DIGGR--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp ECBTT--------TEEECCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCC--------CCEEeecc-CCHHHHHHHHHHHHHHHHHHH
Confidence 99653 23777644 499999999999999987654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=227.29 Aligned_cols=322 Identities=11% Similarity=0.115 Sum_probs=223.4
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEcCCCccc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--------PG-----D-AFLVPSPYYAA 147 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--------~G-----d-~vlv~~P~y~~ 147 (477)
|....+..++++++.+++.+..|. +.+++++++|+|+|+|+.+++.++.. +| + .|+++.+.|+.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s 201 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 201 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCC--CCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH
Confidence 443444567788887887777662 22267999999999999999988743 56 6 78999999999
Q ss_pred hHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 148 FDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+...+... |. +++.++++ .++.+|+++|++++++....+.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 202 ~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g 275 (504)
T 2okj_A 202 IKKAGAAL-GFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN 275 (504)
T ss_dssp HHHHHHHT-TSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence 98887765 66 88899886 36899999999999876555667899999999999999977 888999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhcccCC----
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMSSFGL---- 299 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~~~~~---- 299 (477)
+++++|++|++..+..+.+......+. ...+++.|++|.++.| .++|++++.++.+ .........+..
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~------~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~ 348 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIE------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDK 348 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGG------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCC
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcc------cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcc
Confidence 999999999987654443322111111 2236678999999855 7999999977543 332222222110
Q ss_pred ------------------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEEEE
Q 011801 300 ------------------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLFFW 357 (477)
Q Consensus 300 ------------------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~~~ 357 (477)
...+.++++...+.. ..+++..+++.+.++++.+.|++. |+++.. +..+++++
T Consensus 349 ~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f 423 (504)
T 2okj_A 349 QYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT-----VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCF 423 (504)
T ss_dssp SSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEE
T ss_pred cccCcCCcccCCCCCCCCccHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEE
Confidence 124555555555532 235666777888889999999986 888764 66777776
Q ss_pred eeccchhhc--cC--c-----hHHHHHHHHHHHhcCe-EEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHh
Q 011801 358 MDLRHLLKE--KT--L-----EGEIALWRTIVNDVKL-NVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 358 ~~l~~~~~~--~~--~-----~~e~~l~~~ll~~~gI-~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~ 425 (477)
...+..... .. . ....++.+.+.++ |+ .+.++ .+. ..++++|+++++ .++++++.++++|+++++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~-~~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 500 (504)
T 2okj_A 424 WYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQ-PQG-DKANFFRMVISNPAATQSDIDFLIEEIERLGQ 500 (504)
T ss_dssp EECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEE-EET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEee-EEC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 554432100 00 0 0012456666655 75 44433 222 123689999973 389999999999999876
Q ss_pred h
Q 011801 426 Q 426 (477)
Q Consensus 426 ~ 426 (477)
+
T Consensus 501 ~ 501 (504)
T 2okj_A 501 D 501 (504)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=224.12 Aligned_cols=295 Identities=17% Similarity=0.224 Sum_probs=199.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQI 160 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~ 160 (477)
|.+..+..++|+++|++++ .+++++++|+++|+..++.++ .++||.|+++.|+|+++...++.. |.++
T Consensus 32 ~~~~~~~~~l~~~la~~~~----------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~~ 100 (373)
T 3frk_A 32 FILGDEDKKFEQEFADYCN----------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYT-GAKP 100 (373)
T ss_dssp CSSSHHHHHHHHHHHHHHT----------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHH-SCEE
T ss_pred ccCCchHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEE
Confidence 5555678999999999997 248999999999999999999 899999999999999999888877 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FS 239 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~ 239 (477)
+.+++++ +++.+|+++|++++++ ++++|+ |+||||...+ +++|.++|+++|+++|+|++|+... ++
T Consensus 101 ~~~~~~~-~~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~ 167 (373)
T 3frk_A 101 IFVEPDI-RTYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYK 167 (373)
T ss_dssp EEECEET-TTTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET
T ss_pred EEEeccc-cccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEEC
Confidence 9999874 3688999999988754 788777 6789999888 7788889999999999999998421 22
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCC--cccCCCCceEEEEEeCCHHHHHHHHHhcccCC--------------CchH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLS--KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--------------VSSQ 303 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlS--K~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~--------------vs~~ 303 (477)
... . ..-..+++.||| |.+|.+| +.|+++++++.+.+.++....++. ++.+
T Consensus 168 ~~~------~------~~~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 234 (373)
T 3frk_A 168 GMK------V------GSLGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDEL 234 (373)
T ss_dssp TEE------T------TSSSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHH
T ss_pred CEe------c------cccccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHH
Confidence 211 0 000126778877 9887325 489999987767665554433221 2333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
...+....+.. +++..++.++..+++.+.|.+.++.+.. +..+...|..++-... +..++.+.+. +
T Consensus 235 ~aa~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~ 301 (373)
T 3frk_A 235 QAGFLRVKLKY-------LDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----KRDELQKYLN-N 301 (373)
T ss_dssp HHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----SHHHHHHHHH-H
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----CHHHHHHHHH-H
Confidence 33332222221 2334455566667788888776633321 1222222221111000 1124555554 5
Q ss_pred cCeEEeCCCC--CCCCC------------C-------CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSS--FQCTE------------P-------GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~--f~~~~------------~-------~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.||.++++.. .++.. + +.+|+++.. +++++++.+++.|+++..+
T Consensus 302 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 302 NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 5999987752 11100 1 579999965 4999999999999887654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=219.46 Aligned_cols=342 Identities=12% Similarity=0.054 Sum_probs=199.5
Q ss_pred CCCCcccccccccc--cccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAE--NQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~--n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+. |.++ .+.+.+.+.+..+. + ....|++ ....++++.+++++.
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~------~-----~~~~~~~-~~~~~la~~l~~~~~--------- 107 (429)
T 4e77_A 49 DVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER------G-----LSFGAPT-EMEVKMAQLVTDLVP--------- 107 (429)
T ss_dssp ETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT------C-----SCCSSCC-HHHHHHHHHHHHHST---------
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh------C-----cccCCCC-HHHHHHHHHHHhhCC---------
Confidence 34456789997765 4443 46666666553110 0 0112322 223455555555542
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEE--EEeccCCCCc------------cc
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIV--PVHCDISNNF------------KI 173 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~--~v~~~~~~~f------------~i 173 (477)
.+++|++++|+++|++.+++... .+++.|++.+++|+++...+....+.... ..+.. .++ ..
T Consensus 108 ~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 185 (429)
T 4e77_A 108 TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS--PGVPTDFAKHTLTCTYN 185 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCC--TTSCGGGGTTEEEECTT
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc--CCCCCccCCceeecCCC
Confidence 36899999999999999988542 35678999999998776422111111111 11110 010 01
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCC--CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhh
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTTL--DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~ 251 (477)
|+++|++++++. +.+++ +++++|+||+|.++ +.+.+++|.++|+++|++||+||+|.++ ..+.. .. .+...
T Consensus 186 d~~~le~~l~~~---~~~~~-~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~-~~-~~~~~ 258 (429)
T 4e77_A 186 DLASVRQAFEQY---PQEVA-CIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALA-GA-QDYYH 258 (429)
T ss_dssp CHHHHHHHHHHS---TTTEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTT-CH-HHHTT
T ss_pred CHHHHHHHHHhc---CCCEE-EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcc-hH-HHhcC
Confidence 789999988742 22444 56678877665443 3455999999999999999999999976 33332 11 12211
Q ss_pred hccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----hcccCCCchHHHHHHHHhcC---ChhhHHHHHH
Q 011801 252 EMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----MSSFGLVSSQTQYLLASMLS---DDEFVDNFLV 323 (477)
Q Consensus 252 ~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~ 323 (477)
..++ +.||||.+| +|+|+||+++++ .+.+.+.. ....+..+++++.++.+.|+ +.++ ++
T Consensus 259 ---~~pd----i~t~sK~~~-~G~~~G~~~~~~-~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~----~~ 325 (429)
T 4e77_A 259 ---VIPD----LTCLGKIIG-GGMPVGAFGGRR-EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV----YE 325 (429)
T ss_dssp ---CCCS----EEEEEGGGG-TTSCCEEEEECH-HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH----HH
T ss_pred ---CCCC----eeeeccccc-CCCCeEEEEECH-HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH----HH
Confidence 1222 348999999 899999999954 44443332 11222467788887777665 3333 22
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc--------CchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK--------TLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~--------~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.++.....++.|.+.+.+.++....+..|+|+|++++...... ......++++.++++ ||.++|+..
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~--- 401 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF--- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT---
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC---
Confidence 22222222233344444445654444556789999987531000 001123566666655 999998742
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 396 TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 396 ~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
..+|+++. .+++++++++++|++++++
T Consensus 402 ---~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 ---EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ---SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred ---CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 34677654 4999999999999999864
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=224.92 Aligned_cols=320 Identities=15% Similarity=0.154 Sum_probs=219.6
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCcc-----CCCcEEEeCChHHHHHHHHHHhcCC---------CC--------e--
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTF-----DPDRIVMGGGATGANELIMFCLANP---------GD--------A-- 137 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~~i~~t~G~t~al~~i~~~l~~~---------Gd--------~-- 137 (477)
|....+..++++++++++.+..|.+..+ ....+++|+|+|+|+..++.++.++ || .
T Consensus 105 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 184 (486)
T 1js3_A 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184 (486)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEE
T ss_pred cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEE
Confidence 4444457899999999998887733111 1356899999999999988775321 43 3
Q ss_pred EEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHH
Q 011801 138 FLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLV 217 (477)
Q Consensus 138 vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~ 217 (477)
|+++.++|+.+...++.. |++++.++++ .++.+|+++|++++++..+.+..+.+|++++|+||||.+-+ +++|+
T Consensus 185 v~~s~~~h~s~~~~~~~~-G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~ 258 (486)
T 1js3_A 185 AYASDQAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVG 258 (486)
T ss_dssp EEEETTCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred EEECCCCcHHHHHHHHhC-CCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---HHHHH
Confidence 788999999999988887 9999999986 47899999999999875544555668999999999998866 89999
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhcc
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMSS 296 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~~ 296 (477)
++|+++|+++++|++|++..+..+.+......+. +...++.|++|.++.| +++|++++.++.. .+.+.....
T Consensus 259 ~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~------~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~ 331 (486)
T 1js3_A 259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE------FADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPV 331 (486)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG------GCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC----
T ss_pred HHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcc------ccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCch
Confidence 9999999999999999876544333332211111 1124567899999865 8999999977653 222210000
Q ss_pred c---------------------C-CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCc
Q 011801 297 F---------------------G-LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNA 352 (477)
Q Consensus 297 ~---------------------~-~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~ 352 (477)
+ + ....+.++++...+.. ..+++..+++.++++++.+.|.+. |+++.. +..
T Consensus 332 yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 406 (486)
T 1js3_A 332 YLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV-----KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL 406 (486)
T ss_dssp --------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS
T ss_pred hhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCce
Confidence 0 0 0123455555444422 235666777788889999999887 788764 555
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~~ 428 (477)
++++| .++.. . ....++.+.+.++ |+.+.++..+. +.+++|+++.+. ++++++.++++|++++++..
T Consensus 407 ~~v~f-~~~~~-~----~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 407 GLVCF-RLKGS-D----GLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp SEEEE-EESSC-H----HHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEE-EecCh-H----HHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55544 44421 0 0112466666655 65433332332 367999998653 78999999999999987643
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=217.71 Aligned_cols=290 Identities=16% Similarity=0.230 Sum_probs=201.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
.|.+..+..++++++|++++ .+++++++|+++|+..++.++ .++||.|+++.|+|+.+...+... |.+
T Consensus 30 ~~~~~~~~~~l~~~la~~~~----------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-G~~ 98 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVG----------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALL-GAK 98 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred CccCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 45455678999999999997 247999999999999999999 899999999999999999888877 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-ccc
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVF 238 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~ 238 (477)
++.+++++ +++.+|+++|++++++ ++++|+ |+||||...+ +++|.++|+++|++||+|++|+. ..+
T Consensus 99 ~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~ 165 (367)
T 3nyt_A 99 PVYVDIDP-RTYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASY 165 (367)
T ss_dssp EEEECBCT-TTCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEE
T ss_pred EEEEecCC-ccCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeE
Confidence 99999875 3488999999988743 788766 7899998887 78888889999999999999973 223
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhccc--------------CCCch
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--------------GLVSS 302 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--------------~~vs~ 302 (477)
++.... ..+ .+++.|| +|.+|.+|. .|+++++++.+.+.++....+ ..++.
T Consensus 166 ~~~~~~-----------~~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 232 (367)
T 3nyt_A 166 KGKRSC-----------NLS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDT 232 (367)
T ss_dssp TTEETT-----------SSS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCH
T ss_pred CCeecc-----------CCC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccH
Confidence 221111 111 4678887 899996576 899999877777666554332 12444
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-Cce----EEEEeeccchhhccCchHHHHHHH
Q 011801 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAG----LFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 303 ~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g----~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
+.+.++...+.. +++..++.++..+++.+.|.+.++.+... .++ .++++.++. ..++.+
T Consensus 233 ~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~ 296 (367)
T 3nyt_A 233 LQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDN---------RESVQA 296 (367)
T ss_dssp HHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSS---------HHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCC---------HHHHHH
Confidence 444444444432 22333444555677778888776554322 111 123333331 113545
Q ss_pred HHHHhcCeEEeCCCCCCC--------CC----------CCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011801 378 TIVNDVKLNVSPGSSFQC--------TE----------PGWFRVCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~--------~~----------~~~~Rl~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
.+ .+.||.++++....+ .. ...+|+++.. +++++++.+++.|++.-
T Consensus 297 ~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 297 SL-KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNLE 361 (367)
T ss_dssp HH-HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC--
T ss_pred HH-HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 44 456999887642110 00 2368998865 59999999999887653
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-24 Score=221.95 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=217.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE---EeCChHHHHHHHHHHhcCC--------CC-----eEEEcCCCc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV---MGGGATGANELIMFCLANP--------GD-----AFLVPSPYY 145 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~---~t~G~t~al~~i~~~l~~~--------Gd-----~vlv~~P~y 145 (477)
|..+.+..++++.+.+++.+..| ++.++++++ +|+|+++|+.+++.++..+ |+ .|+++.++|
T Consensus 87 ~~~~p~~~~le~~~~~~la~l~g--~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h 164 (502)
T 3hbx_A 87 MDEYPVTTELQNRCVNMIAHLFN--APLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQ 164 (502)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--CCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCC
T ss_pred hhcChhHHHHHHHHHHHHHHHhC--CCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCch
Confidence 33444567888888888887776 222255544 4999999999998887655 76 899999999
Q ss_pred cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--
Q 011801 146 AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK-- 223 (477)
Q Consensus 146 ~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~-- 223 (477)
..+...++.. |++++.+++++ ++|.+|+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++
T Consensus 165 ~s~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~ 233 (502)
T 3hbx_A 165 VCWEKFARYF-EVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLVEKNK 233 (502)
T ss_dssp HHHHHHHHHT-TCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccC---HHHHHHHHHHhhh
Confidence 9999888877 99999999874 4589999999998864 7889999999999999988 77788888888
Q ss_pred ----CeEEEeccccccccc--CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-HHHHHhcc
Q 011801 224 ----NIHLVCDEIYAATVF--SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-NCGRKMSS 296 (477)
Q Consensus 224 ----~~~lI~De~y~~~~~--~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-~~~~~~~~ 296 (477)
|+++++|++|++++. ..+...-. +. ..+...+..|.+|.++ ++.++|+++..++... ........
T Consensus 234 ~~~~~~~l~VD~A~~~~~~p~~~~~~~~~---~~----~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~ 305 (502)
T 3hbx_A 234 ETGWDTPIHVDAASGGFIAPFLYPELEWD---FR----LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHIN 305 (502)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCS---TT----STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEC
T ss_pred ccCCCCeEEEECCccchhhhhhCcccccc---cC----CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcc
Confidence 999999999986531 11111100 00 1244567789999775 7788999988665432 21111111
Q ss_pred c-----------CC---CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecC-CceEEEEeec
Q 011801 297 F-----------GL---VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKS-NAGLFFWMDL 360 (477)
Q Consensus 297 ~-----------~~---vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~-~~g~~~~~~l 360 (477)
+ +. .....++++...+.... +.+..++..+..+++.+.|++.+ +++..+ ....++.+++
T Consensus 306 yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g-----~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (502)
T 3hbx_A 306 YLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEG-----YRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSL 380 (502)
T ss_dssp SSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEE
T ss_pred cccCCCCCccccCCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEe
Confidence 1 00 12344444444443332 35566677777889999999985 887765 3445677777
Q ss_pred cchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 361 RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 361 ~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
+... ... ..++.+.| .+.||.+....... ..+..++||+++.. ++++++.+++.|++++++.+.
T Consensus 381 ~~~~---~~~-~~~l~~~L-~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 381 KDSS---CHT-EFEISDML-RRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp SSCS---SCC-HHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC---cCC-HHHHHHHH-HhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6421 111 11455555 45699875432211 12346899999764 899999999999999976554
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=220.27 Aligned_cols=325 Identities=11% Similarity=0.092 Sum_probs=225.2
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcC--------------CCCeEEEcCCCc
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLAN--------------PGDAFLVPSPYY 145 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~--------------~Gd~vlv~~P~y 145 (477)
..|....+..++++++++|+.+..|. +.+++.+++|+|+|+|+..++.++.+ +++.|+++.++|
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g~--~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVGW--SSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTC--CSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcccCchHHHHHHHHHHHHHHHhCC--CCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 34666667889999999999988773 23357899999999999988877654 577899999999
Q ss_pred cchHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh
Q 011801 146 AAFDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 146 ~~~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
..+...++.. |. +++.++++. ++.+|+++|++++++....+.++++|++++|+||||.+-+ +++|+++|++
T Consensus 203 ~s~~~~~~~~-g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia~~ 276 (511)
T 3vp6_A 203 YSIKKAGAAL-GFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEK 276 (511)
T ss_dssp THHHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHHHH
Confidence 9999888876 87 889998863 5899999999999876666666899999999999999966 8999999999
Q ss_pred cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH-HHHhcccCC--
Q 011801 223 KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC-GRKMSSFGL-- 299 (477)
Q Consensus 223 ~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~-~~~~~~~~~-- 299 (477)
+|+++++|++|++..+..+.+......+. ....++.+++|.++.| ..+|+++..++..... ......+..
T Consensus 277 ~~~~lhvD~a~~~~~~~~~~~~~~~~g~~------~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~ 349 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSRKHRHKLNGIE------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQ 349 (511)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGG------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCS
T ss_pred cCCEEEEEccchhhHhhChhhhhhccCCc------cCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCc
Confidence 99999999999876554333222111111 2235678999999855 7789998877654332 221111110
Q ss_pred --------------------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEE
Q 011801 300 --------------------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLF 355 (477)
Q Consensus 300 --------------------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~ 355 (477)
...+..+++...+. ...+++..+++.+..+++.+.|++. |+++.. +..+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v 424 (511)
T 3vp6_A 350 DKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 424 (511)
T ss_dssp SCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCE
T ss_pred ccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEE
Confidence 11233333333332 3346777788888889999999887 888765 555555
Q ss_pred EEeeccchhhccC--ch-------HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKT--LE-------GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 356 ~~~~l~~~~~~~~--~~-------~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~ 424 (477)
+|.-.|...+... .. ...++.+.+.++ |+.+.. ..+...+.+++|+++++ .++++++.+++.|+++-
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 502 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 5543343332110 00 012466666665 654332 11112234589999954 38999999999999876
Q ss_pred hh
Q 011801 425 QQ 426 (477)
Q Consensus 425 ~~ 426 (477)
+.
T Consensus 503 ~~ 504 (511)
T 3vp6_A 503 QD 504 (511)
T ss_dssp C-
T ss_pred Hh
Confidence 54
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=211.54 Aligned_cols=282 Identities=11% Similarity=0.101 Sum_probs=197.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCC--cEEEEEeccCC------CCc-ccCHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTG--VQIVPVHCDIS------NNF-KITREALEA 180 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g--~~~~~v~~~~~------~~f-~i~~~~l~~ 180 (477)
+.|++|+|+|+|+++++..+ .+||+|+++++.|.+.. ..++.. | .+++.++.+.. ..| .+|++++++
T Consensus 52 ~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~ 129 (379)
T 3ke3_A 52 AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKG-KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVA 129 (379)
T ss_dssp EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHH-CCSSEEEEEECEESSCCSSCCCEECCCHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHh-CCCCceEEEeccccccccccCCCCCCCHHHHHH
Confidence 67999999999999988655 69999999999987643 233433 5 47777776431 112 479999999
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcE
Q 011801 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~v 260 (477)
++++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|++++ . ..+ ..+... +..
T Consensus 130 ~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~~~-~~~~~~--------~~d 191 (379)
T 3ke3_A 130 KIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---CVW-LDMKEL--------GID 191 (379)
T ss_dssp HHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---TCC-CCHHHH--------TCS
T ss_pred HHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---Ccc-cccccc--------CCC
Confidence 99643 68899999999999999999999999999999999999999986 2 222 232221 334
Q ss_pred EEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--hcc---------------------c-CCCchHHHHHHHHhcCChh
Q 011801 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--MSS---------------------F-GLVSSQTQYLLASMLSDDE 316 (477)
Q Consensus 261 iiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--~~~---------------------~-~~vs~~~q~~~~~~L~~~~ 316 (477)
+++.|++|.++ .+.++|+++++++.+.. +.. ..+ + ++.+...+.++.+.|.-
T Consensus 192 ~~~~s~~K~l~-~~~g~g~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~-- 267 (379)
T 3ke3_A 192 VLISAPQKGWS-STPCAGLVMLSAAAIKK-VESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILE-- 267 (379)
T ss_dssp EEEECTTTTTC-SCCCEEEEEECHHHHHH-HHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHH--
T ss_pred EEEecchhhcC-CCCceEEEEECHHHHHh-hhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHH--
Confidence 77889999987 44569999996654433 321 111 1 13455555555555532
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCC
Q 011801 317 FVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSS 392 (477)
Q Consensus 317 ~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~ 392 (477)
+.+. +++..++++++.+++.+.|+++|+++..+. .+....+..+.. +..+. ..+.++||.+.+|..
T Consensus 268 -~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~~L~~~Gi~v~~g~~ 337 (379)
T 3ke3_A 268 -AKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD--------DMHKG-SAFAEAGLQIAAGVP 337 (379)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH--------HHHSS-HHHHHTTCCCEECCC
T ss_pred -HHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc--------chHHH-HHHHHCCeEEeCCcc
Confidence 1222 466777888888999999999998776543 222233333311 11122 334567999999987
Q ss_pred CCCC---CCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 393 FQCT---EPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 393 f~~~---~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.+. ..+.+|+++... +++++++++++|++++++.
T Consensus 338 ~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 338 LKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp CSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 6542 257999999653 8999999999999998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=222.26 Aligned_cols=295 Identities=13% Similarity=0.083 Sum_probs=192.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---C----------C-CCeEEEcCCCccchHHHHh
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---N----------P-GDAFLVPSPYYAAFDRDLS 153 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~----------~-Gd~vlv~~P~y~~~~~~~~ 153 (477)
..++++.++++++. .++++|++|+|+++|++.++..+. . + ||.|++.+|+|+++.....
T Consensus 103 ~~~la~~la~~~~~-------~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 103 MARFVETFARVLGD-------PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp HHHHHHHHHHHHCC-------TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred HHHHHHHHHHhcCC-------CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 35666666666631 357899999999999999987542 2 2 8999999999988654322
Q ss_pred hhCC--------c-----EEEEEeccCCCCc--------ccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcc-cCCCH
Q 011801 154 WRTG--------V-----QIVPVHCDISNNF--------KITREALEAAYERAQEASINIKGLIITNP-SNPLG-TTLDR 210 (477)
Q Consensus 154 ~~~g--------~-----~~~~v~~~~~~~f--------~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG-~~~~~ 210 (477)
..+| . +++.++.+..+.. ..++++|++++++. +.++++|+ ++| +||+| .+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi-~ep~~~~~G~~~~~~ 251 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFV-AEPIQGEGGDRHFRP 251 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEE-ECSEETTTTCEECCH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEE-EeCcCCCCCCccCCH
Confidence 2212 1 4455554320011 24556677777531 23677655 556 68999 58999
Q ss_pred HHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-
Q 011801 211 DTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN- 289 (477)
Q Consensus 211 ~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~- 289 (477)
+++++|.++|++||+++|+||+|.++.+.+.. ..... .. ..++ +.||||.+ |+||++++++.+..
T Consensus 252 ~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~~~-~~---~~~d----i~t~sK~l-----~iG~~~~~~~~~~~l 317 (449)
T 2cjg_A 252 EFFAAMRELCDEFDALLIFDEVQTGCGLTGTA-WAYQQ-LD---VAPD----IVAFGKKT-----QVCGVMAGRRVDEVA 317 (449)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-STHHH-HT---CCCS----EEEECGGG-----SSEEEEECGGGGGST
T ss_pred HHHHHHHHHHHHCCcEEEEeccccCCCccCcc-eeecc-cC---CCce----EEEecCcc-----cEEEEEECHHHhhhh
Confidence 99999999999999999999999986555542 22221 11 1222 23789988 79999996643321
Q ss_pred ---HHHH--hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----C--CeEecCCceEEEEe
Q 011801 290 ---CGRK--MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----G--INCLKSNAGLFFWM 358 (477)
Q Consensus 290 ---~~~~--~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----g--i~~~~~~~g~~~~~ 358 (477)
.... .......++++|.++.+.|+..+ + ++..++++++++++.+.|+++ . +....+. |.|+++
T Consensus 318 ~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~-g~~~~~ 391 (449)
T 2cjg_A 318 DNVFAVPSRLNSTWGGNLTDMVRARRILEVIE---A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGR-GLMCAF 391 (449)
T ss_dssp TCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHH---H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEE-TTEEEE
T ss_pred hhcccCCcccccCCCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeec-cEEEEE
Confidence 1111 11222367788888877775311 1 123345555666666666543 2 4444444 457788
Q ss_pred eccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 359 DLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 359 ~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+++... ...++++.+++ .||.+.|+. ++++|++++. .+++++++++++|++++++
T Consensus 392 ~~~~~~------~~~~~~~~l~~-~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 392 SLPTTA------DRDELIRQLWQ-RAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp ECSSHH------HHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECChH------HHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 887421 12357777775 699999872 5789998765 4999999999999999865
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=219.04 Aligned_cols=302 Identities=11% Similarity=0.078 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChH-HHHHHHHHHhcC--CCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGAT-GANELIMFCLAN--PGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t-~al~~i~~~l~~--~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
..++.+++.+++.+..| .+++ +++|+|+| .++.+++.++.. +|+.|+++.+.|+.+...++.. |++++.++
T Consensus 131 ~~~~~~~~~~~la~~~g----~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~-G~~~~~v~ 204 (456)
T 2z67_A 131 MYALTNKILESFFKQLG----LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcC----CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHc-CCCceEEE
Confidence 44555556666655554 4455 99999999 566655555433 6788999999999998888876 99999888
Q ss_pred ccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 165 CDI-SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 165 ~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.. ++++.+|+++|++++++... ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+...++ +
T Consensus 205 ~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g---~ 277 (456)
T 2z67_A 205 TVLDGDRVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY---Y 277 (456)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH---H
T ss_pred EeccCCCCCcCHHHHHHHHHHHhh-CCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH---h
Confidence 632 35689999999999942111 126778889999999999988 888889999999999999999854321 1
Q ss_pred ccH-HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCC-Cc-hHHHHHHHHhcCChhhHHH
Q 011801 244 TSV-AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL-VS-SQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~-~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~-vs-~~~q~~~~~~L~~~~~~~~ 320 (477)
.+. ..... . ...+++.|++|.++ .+.++||+++.++.+...+......+. .+ .+.+.++...+. ..
T Consensus 278 ~~~~~~~~~----~-~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~ 346 (456)
T 2z67_A 278 LEKLKKAFK----Y-RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SK 346 (456)
T ss_dssp HHHHHHHHT----S-CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HH
T ss_pred hHHHHHhhC----C-CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HH
Confidence 111 11111 1 22357789999765 678999999966555444432211111 11 334444444442 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeec--cchhhccCchHHHHHHHHHHHhcCe---EEe---
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDL--RHLLKEKTLEGEIALWRTIVNDVKL---NVS--- 388 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l--~~~~~~~~~~~e~~l~~~ll~~~gI---~v~--- 388 (477)
.+++..+++.+.++++.+.|++. |+.+.++. .++++++ +.. ..++...|.++ || .+.
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~--------~~~l~~~L~~~-gi~~~rv~~~~ 415 (456)
T 2z67_A 347 NYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD--------PVEIAAKLYNL-RVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC--------HHHHHHHHHHT-TEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH--------HHHHHHHHHHc-CCCcceEEeec
Confidence 35667778888889999999887 87777666 4566666 321 11455555544 64 454
Q ss_pred ---CCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011801 389 ---PGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 389 ---pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~ 424 (477)
+|..|.....+++|++++. .+++++++++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2444444345799999984 49999999999998754
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=216.92 Aligned_cols=281 Identities=17% Similarity=0.180 Sum_probs=188.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~ 162 (477)
...+|++.+|++++ .+..++++++++|+.+++.+++++||.|++++|+|+++.. .++.. |++++.
T Consensus 83 ~~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~~~~ 151 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG----------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSF-GIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEE
Confidence 46788899998886 2345666667899999999999999999999999998876 44555 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |+++|++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+.
T Consensus 152 v~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~--- 212 (430)
T 3ri6_A 152 VDVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL--- 212 (430)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC---
T ss_pred eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence 8864 78999888754 7999999999999999998 778899999999999999999843221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEe--CCHHH------------------HHHHH--HhcccCC-
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYS--FNDTV------------------VNCGR--KMSSFGL- 299 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~--~~~~i------------------~~~~~--~~~~~~~- 299 (477)
.+ . ..+..+++.|+||.+|-+|..+|.++. .+... ....+ ....++.
T Consensus 213 -~~-~--------~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~ 282 (430)
T 3ri6_A 213 -EA-K--------RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS 282 (430)
T ss_dssp -CG-G--------GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred -Ch-H--------HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC
Confidence 11 1 123457899999999867665555544 22111 11111 1122222
Q ss_pred CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCe-EecCC----------------ceEEEEeecc
Q 011801 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLKSN----------------AGLFFWMDLR 361 (477)
Q Consensus 300 vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~~~----------------~g~~~~~~l~ 361 (477)
.+++..+++...+ +.+..+.++..++...+.+.|++. +++ +..|. +|+.+|+.++
T Consensus 283 ~~~~~a~l~l~~l-------~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~ 355 (430)
T 3ri6_A 283 LSPHNAYLQSLGL-------ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE 355 (430)
T ss_dssp CCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred CCHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC
Confidence 3443333332222 123444556667778888888876 554 33332 5558999998
Q ss_pred chhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHH
Q 011801 362 HLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC---------------------TEPGWFRVCFANMDDDTLQVALNRI 420 (477)
Q Consensus 362 ~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Rl~~~~~~~e~l~~~l~~l 420 (477)
... ....+... ++-.++.+++|..+.. ..++++||+++. |+.+.+++.|
T Consensus 356 ~~~------~~~~~~~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~dl 425 (430)
T 3ri6_A 356 SKE------ASYRFMDA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKEDI 425 (430)
T ss_dssp SHH------HHHHHHHH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHHH
T ss_pred CHH------HHHHHHHh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHH
Confidence 321 11123222 2234566777876651 236799999985 4556667777
Q ss_pred HHHH
Q 011801 421 AAFV 424 (477)
Q Consensus 421 ~~~~ 424 (477)
++++
T Consensus 426 ~~al 429 (430)
T 3ri6_A 426 LQAL 429 (430)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6655
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=227.23 Aligned_cols=287 Identities=13% Similarity=0.050 Sum_probs=187.5
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 84 ~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
+.....++++.+|+ ++ .+ +++++|+|+++|+.+++.+++++||.|+++.|+|..+...+... |++++.+
T Consensus 55 ~~~~~~~~~~~la~-~g--------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS--------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDIS-QQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT--------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHH-TCCEEEC
T ss_pred cchHHHHHHHHHHh-cC--------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHc-CCeEEEE
Confidence 34456788888888 75 23 68999999999999999999999999999999999999888877 9999888
Q ss_pred eccCCCC----cccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccc-ccc
Q 011801 164 HCDISNN----FKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAA-TVF 238 (477)
Q Consensus 164 ~~~~~~~----f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~-~~~ 238 (477)
+...+.+ +.+|+++| +. .++++|++++ +|++|.+.+ +++|+++|+++|+++|+||+|++ +.|
T Consensus 124 ~~~~~~~~~~~~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNLSRL---NN------DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred eCeeccccCcCCCCCHHHH---cC------CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 8732223 56788877 21 2789999999 566999999 78899999999999999999986 224
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-HHHHH-hc--ccCCCchHHHHHHHHhcCC
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-NCGRK-MS--SFGLVSSQTQYLLASMLSD 314 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-~~~~~-~~--~~~~vs~~~q~~~~~~L~~ 314 (477)
.+. ..+.... +..+++.|+||.++ ++.++||++++++.+. ..... .. ..++.+.....++...+
T Consensus 191 ~~~-~~~~~~~--------g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~-- 258 (446)
T 2x3l_A 191 QGF-PDSTLNY--------QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAA-- 258 (446)
T ss_dssp TTS-CCCGGGG--------TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHH--
T ss_pred CCC-CCChHHc--------CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHH--
Confidence 433 2232221 12378899999664 4445899999765432 11111 11 11223322222222222
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe-CCCC
Q 011801 315 DEFVDNF-LVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS-PGSS 392 (477)
Q Consensus 315 ~~~~~~~-~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~-pg~~ 392 (477)
++++.. .++..++..+..+.+.+. |+++..+..+.++|++++. .. ..++.+.+.++ ||.+. +|
T Consensus 259 -~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~-~~------~~~l~~~L~~~-GI~v~~~g-- 323 (446)
T 2x3l_A 259 -QFYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEG-FT------GHDIQNWFMNA-HIYLELAD-- 323 (446)
T ss_dssp -HHHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTT-SC------HHHHHHHHHHT-TEEESEEC--
T ss_pred -HHHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCC-cC------HHHHHHHHHHC-CCEEEecC--
Confidence 111110 011222233333333333 7888766555689998872 11 12455666555 99997 54
Q ss_pred CCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 393 FQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 393 f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
.+++|++++.. +++++ +++++|++++++.
T Consensus 324 -----~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 -----DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -----SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -----CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 35799999863 78889 9999999998764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=214.99 Aligned_cols=321 Identities=14% Similarity=0.149 Sum_probs=214.5
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-------C-CCC------eEEEcCCCccc
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-------N-PGD------AFLVPSPYYAA 147 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-------~-~Gd------~vlv~~P~y~~ 147 (477)
|....+..++.+++.+++.+..| .+++++++|+|+|+|+..++.++. + +|| .|+++.+.|+.
T Consensus 140 ~~~s~~~~~le~~~~~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 140 YEIAPVFVLMEEEVLRKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhchHHHHHHHHHHHHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 43334555677776666666655 447899999999999998887763 2 576 89999999998
Q ss_pred hHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 148 FDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+...++.. |. +++.++++. ++.+|+++|++++++...++.++++|++++|+||||.+.+ +++|.++|+++|
T Consensus 216 ~~~~~~~~-g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g 289 (515)
T 2jis_A 216 IQKGAAFL-GLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHG 289 (515)
T ss_dssp HHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcC
Confidence 88887766 77 899999863 6789999999999876555667899999999999999988 888999999999
Q ss_pred eEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--HHHHHHHHhccc-----
Q 011801 225 IHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--TVVNCGRKMSSF----- 297 (477)
Q Consensus 225 ~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--~i~~~~~~~~~~----- 297 (477)
+++++|++|++..+..+.+......+ .+..+++.|++|.++ .+.++|++++.++ .+.........+
T Consensus 290 ~~l~vD~a~~~~~~~~~~~~~~~~g~------~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~ 362 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQTHRHLLDGI------QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQD 362 (515)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTG------GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC---------
T ss_pred CeEEEehhhhhHHHhChhhHhhcCCC------ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCc
Confidence 99999999998765444332211111 123467889999997 4468999999776 333321111110
Q ss_pred ---------CC--------CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCceEEEEe
Q 011801 298 ---------GL--------VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNAGLFFWM 358 (477)
Q Consensus 298 ---------~~--------vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~g~~~~~ 358 (477)
+. ...+.++++...+.. ..+++..++..+..+++.+.|++. |+++.. +..+.+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 437 (515)
T 2jis_A 363 KFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGD-----QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFW 437 (515)
T ss_dssp CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEE
T ss_pred ccccccCCCCCCCCCCCCcccHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEE
Confidence 00 113444444444432 235566777888889999999987 887764 344555554
Q ss_pred eccchhhc----cCchHHH-----HHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec-c-CCHHHHHHHHHHHHHHHhh
Q 011801 359 DLRHLLKE----KTLEGEI-----ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA-N-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 359 ~l~~~~~~----~~~~~e~-----~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~-~-~~~e~l~~~l~~l~~~~~~ 426 (477)
..+..... ..+.... .+.+.+.++ |+........ ...++++|++++ . .++++++.++++|++++++
T Consensus 438 ~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 438 FVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp ECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 44432211 1111111 134445444 7543211000 112468999994 3 3899999999999988754
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=218.07 Aligned_cols=316 Identities=11% Similarity=0.135 Sum_probs=212.7
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEEEeCChHHHHHHHHHHh----c---------CC------CC-eEEE
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIVMGGGATGANELIMFCL----A---------NP------GD-AFLV 140 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~~t~G~t~al~~i~~~l----~---------~~------Gd-~vlv 140 (477)
|....+..++++++.+++.+..| +++ +.+++|+|+|+|+..++.++ . .+ |+ .|++
T Consensus 132 ~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~ 207 (497)
T 2qma_A 132 WDQASSATYVEQKVVNWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC 207 (497)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE
T ss_pred hhhChHHHHHHHHHHHHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE
Confidence 43334567888887777777766 333 78999999999999988873 2 12 46 7999
Q ss_pred cCCCccchHHHHhhhCCc---EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHH
Q 011801 141 PSPYYAAFDRDLSWRTGV---QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLV 217 (477)
Q Consensus 141 ~~P~y~~~~~~~~~~~g~---~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~ 217 (477)
+.+.|..+...+... |. +++.++++ .++.+|+++|++++++....+.++.+|++++|+||||.+.+ +++|.
T Consensus 208 s~~~h~s~~~~~~~~-g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~ 281 (497)
T 2qma_A 208 SKKSHFTVQKSASWM-GLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIA 281 (497)
T ss_dssp ETTSCTHHHHHHHHT-TSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred CCCchHHHHHHHHHc-CCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHH
Confidence 999998888877765 65 78889886 36889999999999864443334558899999999999877 88899
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF 297 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~ 297 (477)
++|+++|+++++|++|++..+..+ +......++ ...+++.|++|.++.| .++|+++..++.....+.....+
T Consensus 282 ~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~------~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~y 353 (497)
T 2qma_A 282 DMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE------RAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADY 353 (497)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG------GCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC----
T ss_pred HHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc------cCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchh
Confidence 999999999999999997654333 221111111 2236678999999855 79999998766532221111111
Q ss_pred CC------C-------------chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEe-cCCceEEE
Q 011801 298 GL------V-------------SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCL-KSNAGLFF 356 (477)
Q Consensus 298 ~~------v-------------s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~-~~~~g~~~ 356 (477)
.. . ..+.++++...+.. ..+++..+++.+.++++.+.|++. ++++. ++..+ ++
T Consensus 354 l~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-~v 427 (497)
T 2qma_A 354 LNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP-----KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS-TV 427 (497)
T ss_dssp ----------------CCSCCCTHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS-EE
T ss_pred cCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce-EE
Confidence 00 0 12233334444432 234566677788889999999986 78775 45554 66
Q ss_pred EeeccchhhccCchH-HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 357 WMDLRHLLKEKTLEG-EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~-e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
++++.... ..... ..++.+.+. +.|+.+.++..+. +.+++|+++.+ .+++++++++++|++++++
T Consensus 428 ~f~~~~~~--~~~~~l~~~l~~~l~-~~G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 428 LFRATHET--ADLDELNKALRLEAL-TRGIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp EEEECCSS--SCHHHHHHHHHHHHH-HHTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCc--cCHHHHHHHHHHHHH-hCCCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 66665321 01110 123445555 4598886654432 35689999842 3899999999999998765
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=205.96 Aligned_cols=281 Identities=16% Similarity=0.157 Sum_probs=189.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH-----hhhCCcEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL-----SWRTGVQIVP 162 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~-----~~~~g~~~~~ 162 (477)
..+|++.+|++.+ .++.++++++++|+.+ +..++++||.|+++.|+|++....+ +.. |++++.
T Consensus 69 ~~~l~~~la~l~g----------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~-g~~~~~ 136 (400)
T 3nmy_A 69 RFAYERCVAALEG----------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTA-GLDFSF 136 (400)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHH-CCEEEE
T ss_pred HHHHHHHHHHHhC----------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhc-CeEEEE
Confidence 5678888888875 2367777777999998 4678899999999999998655443 334 999998
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|+...+..+
T Consensus 137 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~- 199 (400)
T 3nmy_A 137 VDLT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRP- 199 (400)
T ss_dssp ECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCG-
T ss_pred ECCC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCCh-
Confidence 8864 68899888754 7899999999999999998 88899999999999999999974333211
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEE--EEeCCHHHHHHHHHhc-cc-CCCchHHHHHHHHhcCChhhH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGI--VYSFNDTVVNCGRKMS-SF-GLVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~--i~~~~~~i~~~~~~~~-~~-~~vs~~~q~~~~~~L~~~~~~ 318 (477)
. ..+..+++.|+||.+|-+|.++|. ++..++.+.+.++... .+ ...++...+++...++.
T Consensus 200 -~-----------~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~---- 263 (400)
T 3nmy_A 200 -L-----------SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT---- 263 (400)
T ss_dssp -G-----------GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT----
T ss_pred -h-----------hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH----
Confidence 1 113458899999999988888765 5665666655554332 22 23566666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-CCe-Eec----------------CCceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV-GIN-CLK----------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~-gi~-~~~----------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
+....++..++.+.+.+.|++. .+. +.. ...|.+++++++.... ....+... +
T Consensus 264 ---l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~-----~~~~~~~~-l 334 (400)
T 3nmy_A 264 ---LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFD-----AAKRFCEK-T 334 (400)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHH-----HHHHHHHH-C
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHH-----HHHHHHHc-C
Confidence 2333455566777788888776 332 221 2246788999874211 11122222 2
Q ss_pred HhcCeEEeCCCCCC----------C-----------CCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 381 NDVKLNVSPGSSFQ----------C-----------TEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 381 ~~~gI~v~pg~~f~----------~-----------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+-.++.++.|..+. . ..++.+|++++. |+.+.+++.|+++++
T Consensus 335 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 335 ELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred CcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 22234445554332 1 135799999995 445566777777775
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-23 Score=208.91 Aligned_cols=208 Identities=15% Similarity=0.108 Sum_probs=150.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
..++++.+|++++ .+++++++|+++|+.+++.+++++||.|+++.|.|++....+ +.. |+++..+
T Consensus 84 ~~~le~~lA~l~g----------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~-G~~v~~v 152 (415)
T 2fq6_A 84 HFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWF 152 (415)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CcEEEEE
Confidence 5679999999886 245777888999999999999999999999999998876543 344 9999888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccccccccCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y~~~~~~~~ 241 (477)
+.+ |+++|++++++ ++|+|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+..++. .
T Consensus 153 ~~~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~-~ 215 (415)
T 2fq6_A 153 DPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF-K 215 (415)
T ss_dssp CTT-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS-C
T ss_pred CCC-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC-C
Confidence 753 67888888754 7899999999999999998 7889999999 99999999999853221 1
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCHHHHHHHHHh-cccCC-CchHHHHHHHHhcCChhhH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFNDTVVNCGRKM-SSFGL-VSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~~i~~~~~~~-~~~~~-vs~~~q~~~~~~L~~~~~~ 318 (477)
++ . .+..+++.|+||.+|.+|.+ +||++++++.+ +.++.. ..++. .++...+++...++
T Consensus 216 ---p~-~--------~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~-~~l~~~~~~~G~~~~~~~a~~~~~~l~----- 277 (415)
T 2fq6_A 216 ---AL-D--------FGIDVSIQAATKYLVGHSDAMIGTAVCNARCW-EQLRENAYLMGQMVDADTAYITSRGLR----- 277 (415)
T ss_dssp ---GG-G--------GTCSEEEEETTTTTTCSSSCCCEEEEECTTTH-HHHHHHHHHTTCCCCHHHHHHHHHHHH-----
T ss_pred ---cc-c--------cCCeEEEEeCccccCCCCCceEEEEEeCHHHH-HHHHHHHHhcCCCCCHHHHHHHHhhhh-----
Confidence 11 1 13457899999999988765 69999876543 333322 22332 34443443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+....++..++.+.+.+.|++.
T Consensus 278 --~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 278 --TLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC
Confidence 13334445566667777777765
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=211.94 Aligned_cols=321 Identities=13% Similarity=0.077 Sum_probs=227.0
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCcc------CCCcEEEeCChHHHHHHHHHHhcC-------------------C
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTF------DPDRIVMGGGATGANELIMFCLAN-------------------P 134 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~~i~~t~G~t~al~~i~~~l~~-------------------~ 134 (477)
..|....+..++++++++|+.+..|.+..+ .....++|+|+|+++..++.+..+ +
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 356666788999999999999987743211 013689999999999988876532 5
Q ss_pred CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHH
Q 011801 135 GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLK 214 (477)
Q Consensus 135 Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~ 214 (477)
++.|+++.++|..+...+... |.+++.++++ .++.+|+++|++++++....+..+.+|+++.++|+||.+-+ ++
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~~-g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---l~ 261 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLIS-LVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---LS 261 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HH
T ss_pred CeEEEEcCcchHHHHHHHHhC-CCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---HH
Confidence 779999999999999888876 9999999986 46899999999999876655656888899999999999866 88
Q ss_pred HHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHH-HHHH
Q 011801 215 SLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVN-CGRK 293 (477)
Q Consensus 215 ~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~-~~~~ 293 (477)
+|+++|++||+++++|++|++..+..+.+......++ ....+..+++|.++.| ..+|+++..++.... ....
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~------~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~ 334 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE------YADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSV 334 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG------GCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCC
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc------cCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcC
Confidence 9999999999999999999875443333222211111 1134567999999855 568888887765432 1111
Q ss_pred hcccC------------------C--CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCc
Q 011801 294 MSSFG------------------L--VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNA 352 (477)
Q Consensus 294 ~~~~~------------------~--vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~ 352 (477)
...|. . ...+.++++...+.. ..+++..++..++.+++.+.|++. |+++..+..
T Consensus 335 ~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~ 409 (481)
T 4e1o_A 335 NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGV-----KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH 409 (481)
T ss_dssp CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC
T ss_pred CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc
Confidence 11110 0 123444554444422 235666778888889999999987 888876555
Q ss_pred eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 353 GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 353 g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
..+++++++... ....++.+.+.++.++.+.|+.. .+..++|+++.+. ++++++.++++|+++.++
T Consensus 410 ~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 410 LGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp SSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567788775311 11235677777663355555432 2356899998753 789999999999998865
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=210.30 Aligned_cols=320 Identities=13% Similarity=0.103 Sum_probs=221.8
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCcc-----CCCcEEEeCChHHHHHHHHHHhcC-------------------CCC
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTF-----DPDRIVMGGGATGANELIMFCLAN-------------------PGD 136 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~~~i~~t~G~t~al~~i~~~l~~-------------------~Gd 136 (477)
.|....+..++++++++|+.+..|.+..+ .....++|+|+|+++..++.+..+ +++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 46666778899999999999887732111 013689999999999888876521 346
Q ss_pred eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHH
Q 011801 137 AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSL 216 (477)
Q Consensus 137 ~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l 216 (477)
.|+++.++|..+...++.. |++++.++++. ++ +|+++|++++++..+.+..+.+|+++.++|+||.+-+ +++|
T Consensus 184 ~vi~s~~~H~s~~~~~~~~-g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~I 256 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLG-GVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDEC 256 (475)
T ss_dssp EEEEETTSCHHHHHHHHHH-TCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCchHHHHHHHHHc-CCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHHH
Confidence 8999999999999888877 99999999874 56 9999999999876655656788899999999999977 8889
Q ss_pred HHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-HHHHHHhc
Q 011801 217 VSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-VNCGRKMS 295 (477)
Q Consensus 217 ~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-~~~~~~~~ 295 (477)
+++|+++|+++++|++|++..+..+.+......+. ....+..+++|.++ ....+|+++..++.. ...+....
T Consensus 257 ~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~------~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~~~~ 329 (475)
T 3k40_A 257 GPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE------SADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFNVDP 329 (475)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGG------GCSEEEECHHHHSS-CCSSCEEEEESSGGGC--------
T ss_pred HHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcc------cCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhcCCc
Confidence 99999999999999999865333322222111111 12356779999987 446789988876543 22221111
Q ss_pred ccCC----------------C----chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 296 SFGL----------------V----SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 296 ~~~~----------------v----s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
.|.. . ..+.++++...+.. ..+++..++..++.+++.+.|++. |+++..+....
T Consensus 330 ~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~ 404 (475)
T 3k40_A 330 LYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGV-----ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMG 404 (475)
T ss_dssp -------------------CCCGGGTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTT
T ss_pred cccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceE
Confidence 1100 0 12333443343322 235666777888889999999987 88887655445
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhhh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~~ 427 (477)
.++++++... ....++.+.+.++.++.+.|+..+ +..++|+++.+. ++++++.++++|+++.++.
T Consensus 405 iv~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 405 LVCFRLKGSN-----ERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp EEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCch-----HHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6677765311 112357777777755556555432 356899998753 7899999999999988753
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-22 Score=198.82 Aligned_cols=292 Identities=15% Similarity=0.172 Sum_probs=193.5
Q ss_pred CcHHHHHHH-HHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 87 GLPEFRQAV-AKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 87 G~~~lr~ai-a~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
...+|++++ |++++ .++++++++|+++|+.+++.++ ++|||.|+++.|+|+.+...+... |++++.++
T Consensus 37 ~~~~l~~~~~a~~~g---------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~-G~~~~~v~ 106 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQ---------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWC-GLEPYFID 106 (377)
T ss_dssp HHHHHHHHHHHHTST---------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHhC---------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEe
Confidence 468999999 99986 1467899999999999999998 899999999999999999888877 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKF 243 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~ 243 (477)
++. ++|.+|++++++++.+. +.++|+|+ |+||+|...+ +++|.++|+ +|++||+|++|+... +.+
T Consensus 107 ~~~-~~~~~d~~~l~~~i~~~---~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~--- 172 (377)
T 3ju7_A 107 ISI-DDWYMDKTVLWDKIEEL---KEEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGG--- 172 (377)
T ss_dssp BCT-TTCSBCHHHHHHHHHHH---GGGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETT---
T ss_pred cCC-ccCCcCHHHHHHHHhcC---CCCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECC---
Confidence 874 47899999999998432 11388776 6789999988 777888888 999999999997321 111
Q ss_pred ccHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccC--------------CCchHHHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--------------LVSSQTQYL 307 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~--------------~vs~~~q~~ 307 (477)
..+... ..+ +.+.|| +|.++ +| +.|+++++++.+.+.++.+..++ .++.+.+.+
T Consensus 173 ~~~g~~------~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~ 242 (377)
T 3ju7_A 173 MHYGQD------FSG--MIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAI 242 (377)
T ss_dssp EETTTT------CSS--EEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHH
T ss_pred EeccCC------CCc--EEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHH
Confidence 111000 113 344554 69998 45 78999998888777766654422 134444444
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC---CeEecCCc--e--EEEEeeccchhhccCchHHHHHHHHHH
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG---INCLKSNA--G--LFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g---i~~~~~~~--g--~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
+...+.. +.+..++.++..+.+.+.|++++ +.+.+..+ . .|+.+.++... .. .++.+. |
T Consensus 243 ~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~l~~~-L 308 (377)
T 3ju7_A 243 GIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV-----RN-KQVIED-L 308 (377)
T ss_dssp HHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS-----CH-HHHHHH-H
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh-----hH-HHHHHH-H
Confidence 4444432 22333344455556666676663 22222111 1 23344444311 11 134444 4
Q ss_pred HhcCeEEeCCC--CCCCC--------C---------CCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGS--SFQCT--------E---------PGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~--~f~~~--------~---------~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
++.||.++.+. .++.. . .+.+|+.+.. +++++++.+++.|++++.+
T Consensus 309 ~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 309 KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 56699988775 22211 0 2369998864 5999999999999988865
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=203.64 Aligned_cols=302 Identities=15% Similarity=0.117 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCc---EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH--------HHhhhCC
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDR---IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR--------DLSWRTG 157 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~---i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~--------~~~~~~g 157 (477)
.++++...+.+.+.+| .+++. .++++++++|+..++.++++|||.|++++|.|.++.. .+... |
T Consensus 99 ~~lE~~a~~~~a~l~g----~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~-g 173 (490)
T 2a7v_A 99 DEIELLCQRRALEAFD----LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-S 173 (490)
T ss_dssp THHHHHHHHHHHHHTT----CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------
T ss_pred HHHHHHHHHHHHHHcC----CCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHc-C
Confidence 4666444344444433 34442 3556678999999999999999999999999865421 12233 5
Q ss_pred cE--EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc-
Q 011801 158 VQ--IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA- 234 (477)
Q Consensus 158 ~~--~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~- 234 (477)
.. +++++++. .++.+|+++|++++++. ++|+|+++.|+||+ ..+ +++|.++|+++|+++++|+++.
T Consensus 174 ~~~~~~~~~vd~-~~~~iD~d~le~~l~~~-----~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 174 IFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp -------CCBCT-TTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGH
T ss_pred CeEEEEeccccc-ccCCcCHHHHHHHHhhc-----CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEcccccc
Confidence 44 34444443 35789999999998754 67888888889885 445 8889999999999999999964
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHhccc---
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKMSSF--- 297 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~~~~--- 297 (477)
++++.+....++ . ...+++.|+||.+ .|.|.|+|+++++ .+.+..++....
T Consensus 243 glv~~g~~~~~~----~------~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~q 310 (490)
T 2a7v_A 243 GLVAAKVIPSPF----K------HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310 (490)
T ss_dssp HHHHTTSSCCGG----G------TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTC
T ss_pred ccccCCcCCCCC----C------CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCC
Confidence 333333221221 1 1236789999998 4678899998764 233444433222
Q ss_pred CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHH
Q 011801 298 GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 298 ~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+..+.....+++.++.. ..+...++..+++.++++++.+.|.+.|+++..+ ....++|++++... ... +.+
T Consensus 311 ggp~~~~iaAla~Al~~--~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g----~~~--~~~ 382 (490)
T 2a7v_A 311 GGPHNHAIAAVAVALKQ--ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG----LDG--ARA 382 (490)
T ss_dssp CSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTT----CCH--HHH
T ss_pred CCchHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCC----CCH--HHH
Confidence 11222222333323321 1111235667788889999999999999988652 34568899987421 111 124
Q ss_pred HHHHHhcCeEEeCCCCCC---CCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQ---CTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~---~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~ 426 (477)
...|++.||.+..+..++ +..++.+|++... +++++++++++.|.+++..
T Consensus 383 ~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 383 ERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 556678899998654433 2335789997732 4789999999999999864
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=199.84 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
..++++++|++++. .+.|++ +++++|+..++.+++++||.|+++.|.|+++...+ +.. |++++.+
T Consensus 60 ~~~l~~~la~~~g~---------~~~v~~-~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 128 (421)
T 2ctz_A 60 VDVLEKRLAALEGG---------KAALAT-ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHTC---------SEEEEE-SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHT-TCEEEEC
T ss_pred HHHHHHHHHHHhCC---------CceEEe-cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEEE
Confidence 57899999999862 134554 44599999999999999999999999999877654 444 9999888
Q ss_pred -eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 -HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 -~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+.+ |++++++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.+....
T Consensus 129 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~ 192 (421)
T 2ctz_A 129 SREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP 192 (421)
T ss_dssp CTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG
T ss_pred CCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc
Confidence 643 68899888754 7999999999999999999 889999999999999999999323232221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeC
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSF 283 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~ 283 (477)
. .. +..+++.|+||.+|.+|.|+|++++.
T Consensus 193 ---~-~~--------~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 193 ---L-AW--------GAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp ---G-GG--------TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ---c-cc--------CCeEEEECCcccccCCCCcEEEEEEe
Confidence 1 11 23478899999999999999988874
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-21 Score=192.56 Aligned_cols=291 Identities=16% Similarity=0.160 Sum_probs=191.1
Q ss_pred cCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-------cCCCCeEEEcCCCccchHHHHhh
Q 011801 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-------ANPGDAFLVPSPYYAAFDRDLSW 154 (477)
Q Consensus 82 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-------~~~Gd~vlv~~P~y~~~~~~~~~ 154 (477)
|.+..+..++++++|++++. +++++++++++|+.+++.++ .++||.|+++.|+|+++...++.
T Consensus 30 ~~~~~~~~~l~~~la~~~~~----------~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~ 99 (390)
T 3b8x_A 30 FTMGEYVKQYETQFAKTFGS----------KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ 99 (390)
T ss_dssp CSSCHHHHHHHHHHHHHHTC----------SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHCC----------CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH
Confidence 44556789999999999971 25677777788999999998 78999999999999999988887
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. |.+++.++++++ +|.+|+++|++++++ ++++|+++| ++|...+ +++|.++|+++|+++|+|++|+
T Consensus 100 ~-g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~ 165 (390)
T 3b8x_A 100 Y-GLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCES 165 (390)
T ss_dssp T-TCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTC
T ss_pred c-CCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCc
Confidence 6 999999998753 588999999998853 789998884 5666655 8889999999999999999998
Q ss_pred c-cccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC---------------
Q 011801 235 A-TVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--------------- 298 (477)
Q Consensus 235 ~-~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~--------------- 298 (477)
. ..++. .. . +...+...+....+|.++ +| +.|+++++++.+.+.++.....+
T Consensus 166 ~g~~~~~---~~---~----g~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 233 (390)
T 3b8x_A 166 MGATFNN---KC---A----GTFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVK 233 (390)
T ss_dssp TTCEETT---EE---T----TSSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEEC
T ss_pred ccCEECC---cc---c----ccccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccc
Confidence 3 22211 10 0 001111111112356554 34 34999997755554443322111
Q ss_pred --------------C----CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC--CceE-EE
Q 011801 299 --------------L----VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS--NAGL-FF 356 (477)
Q Consensus 299 --------------~----vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~--~~g~-~~ 356 (477)
. .+.+...++...| + .+++..++.++.++++.+.|+++ |+.+..+ ..++ .+
T Consensus 234 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l---~----~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 306 (390)
T 3b8x_A 234 SDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL---K----KLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGF 306 (390)
T ss_dssp CSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEE
T ss_pred cccccccccceeccccccCcCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEE
Confidence 0 2333333332323 2 24556667777888899999887 7766543 2332 35
Q ss_pred EeeccchhhccCchHHHHHHHHHHHhcCeEEeC---CCCCCC-C--C-----------------CCEEEEEecc-CCHHH
Q 011801 357 WMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSP---GSSFQC-T--E-----------------PGWFRVCFAN-MDDDT 412 (477)
Q Consensus 357 ~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~p---g~~f~~-~--~-----------------~~~~Rl~~~~-~~~e~ 412 (477)
++.++... .... .++.+.+ .+.||.+++ |+.+.. . . .+.+|+++.. +++++
T Consensus 307 ~i~~~~~~---~~~~-~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d 381 (390)
T 3b8x_A 307 SFIIKKDS---GVIR-KQLVENL-NSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE 381 (390)
T ss_dssp EEEECTTS---CCCH-HHHHHHH-HHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred EEEecCcC---cccH-HHHHHHH-HHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence 56655210 0111 1455555 456999987 332211 0 0 1369999965 49999
Q ss_pred HHHHHHHH
Q 011801 413 LQVALNRI 420 (477)
Q Consensus 413 l~~~l~~l 420 (477)
++.+++.|
T Consensus 382 i~~i~~~l 389 (390)
T 3b8x_A 382 IDYLREVL 389 (390)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998876
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=201.05 Aligned_cols=240 Identities=17% Similarity=0.115 Sum_probs=169.9
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHH-----
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRD----- 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~----- 151 (477)
.|+++ |..+|++.+|++++ .+..++ ++|+++|+..++.++++|||.|++++ |.|+++...
T Consensus 69 ~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 137 (427)
T 3i16_A 69 GYGDI-GRDSLDAVYARVFN----------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITE 137 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSC
T ss_pred CCCHH-HHHHHHHHHHHHhC----------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccc
Confidence 35554 57889999999987 233355 78889999999999999999999999 999987743
Q ss_pred ------HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC----CCCCcccCCCHHHHHHHHHHHH
Q 011801 152 ------LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN----PSNPLGTTLDRDTLKSLVSFIN 221 (477)
Q Consensus 152 ------~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n----P~NPtG~~~~~~~l~~l~~~~~ 221 (477)
++.. |++++.++++. ++.+|++++++++++ ..++|+|++++ |+||||.+ .++++|+++|+
T Consensus 138 ~~~~~~l~~~-G~~~~~v~~~~--~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~ 207 (427)
T 3i16_A 138 NSNMGSLKEF-GINYKQVDLKE--DGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVK 207 (427)
T ss_dssp CCSSCCTGGG-TCEEEECCCCT--TSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHH
T ss_pred cchHHHHHHc-CCEEEEecCcc--CCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHH
Confidence 3444 99999998764 457899999999862 12899999999 99999876 45999999999
Q ss_pred h--cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hccc
Q 011801 222 D--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSSF 297 (477)
Q Consensus 222 ~--~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~~ 297 (477)
+ +|+++|+|++|+..++...+ . ..+..++++|+||.+|.+| .+.||++++++ +++.++. ....
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p-~-----------~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~-li~~l~~~~~~~ 274 (427)
T 3i16_A 208 NIRKDIICFVDNCYGEFMDTKEP-T-----------DVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYRLTVP 274 (427)
T ss_dssp HHCTTSEEEEECTTTTTSSSSCG-G-----------GGTCSEEEEETTSGGGTTTCCSCEEEEECHH-HHHHHHHHHSCT
T ss_pred HhCCCCEEEEECCCccccccCCc-c-----------ccCCeEEEecCcccCCCCCCceEEEEEECHH-HHHHHHHhcccC
Confidence 9 99999999999865433221 1 1133478999999998555 66799999654 4444443 2221
Q ss_pred --CC-Cch-HH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce----EEEEeecc
Q 011801 298 --GL-VSS-QT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG----LFFWMDLR 361 (477)
Q Consensus 298 --~~-vs~-~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g----~~~~~~l~ 361 (477)
+. +++ +. ..++...+ ..+..+.+++.++...+.+.|+++|+++.+.... +.+.+.+.
T Consensus 275 ~~g~~~~~~~~~a~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 275 GIGGECGSTFGVVRSMYQGL-------FLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFN 340 (427)
T ss_dssp TTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECS
T ss_pred ccCccCCccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEEC
Confidence 11 111 11 12222222 1234556677888899999999999988654221 25556665
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=203.30 Aligned_cols=345 Identities=13% Similarity=0.104 Sum_probs=212.1
Q ss_pred CCCCccccccccccc--cc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAEN--QL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+.. .+ +.+.+.+++.+.... .+ +.....|+. ....++++++++.+.+..+ .
T Consensus 59 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-----~~---~~~~~~~~~-~~~~~l~~~la~~l~~~~~----~ 125 (472)
T 1ohv_A 59 DVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV-----ST---FINRPALGI-LPPENFVEKLRESLLSVAP----K 125 (472)
T ss_dssp BTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGH-----HH---HHCCCCTTT-SCBTTHHHHHHHTGGGGCC----T
T ss_pred eCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhh-----cc---ccccccccc-ccHHHHHHHHHHHHHHhCC----C
Confidence 344567899876543 23 356666766553110 00 001112332 2357999999997776543 2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--------C-----------------CC---CeEEEcCCCccchHHHHhhhCCcE--
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--------N-----------------PG---DAFLVPSPYYAAFDRDLSWRTGVQ-- 159 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--------~-----------------~G---d~vlv~~P~y~~~~~~~~~~~g~~-- 159 (477)
.+++|++++|+++|++.+++.+. . || +.|++.+++|+++...+...+|..
T Consensus 126 ~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~ 205 (472)
T 1ohv_A 126 GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI 205 (472)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHH
T ss_pred CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccc
Confidence 57899999999999999998763 1 46 899999999998765543222321
Q ss_pred -----------EEEEeccC---CCC--c-----ccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHH
Q 011801 160 -----------IVPVHCDI---SNN--F-----KITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLV 217 (477)
Q Consensus 160 -----------~~~v~~~~---~~~--f-----~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~ 217 (477)
.+++|... ... + ..|+++|++++++....+.++++|++...+|++|. ..+.+.+++|.
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~ 285 (472)
T 1ohv_A 206 HKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 285 (472)
T ss_dssp HHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHH
T ss_pred cccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHH
Confidence 12332110 000 1 12578888888754222236787776655788997 56799999999
Q ss_pred HHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCC--CCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc
Q 011801 218 SFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCN--RDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS 295 (477)
Q Consensus 218 ~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~--~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~ 295 (477)
++|+++|+++|+||+|.++.+.+. +...... +.. .+ +.||||.+ +.| ||++ +++ +.. .....
T Consensus 286 ~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~----gv~~~~D----i~t~sK~~-l~G---G~~~-~~~-~~~-~~~~~ 349 (472)
T 1ohv_A 286 DISRKHGCAFLVDEVQTGGGSTGK-FWAHEHW----GLDDPAD----VMTFSKKM-MTG---GFFH-KEE-FRP-NAPYR 349 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSS-SSGGGGG----CCSSCCS----EEEECGGG-SSE---EEEE-CGG-GSC-SSSSS
T ss_pred HHHHHhCCEEEEeCcccCCCCCCC-chhcccc----CCCCCCC----EEEEcccc-ccC---CccC-chh-hcc-ccccc
Confidence 999999999999999987544432 2222211 101 22 34899994 345 7766 333 321 11111
Q ss_pred ccC--CCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----C--CeEecCCceEEEEeeccchhhcc
Q 011801 296 SFG--LVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV----G--INCLKSNAGLFFWMDLRHLLKEK 367 (477)
Q Consensus 296 ~~~--~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----g--i~~~~~~~g~~~~~~l~~~~~~~ 367 (477)
.++ ..++++|.++.+.|+.. ++ ....++++++++++.+.|+++ . +....+. |+|++++++..
T Consensus 350 ~~~T~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~-g~~~~~~~~~~---- 419 (472)
T 1ohv_A 350 IFNTWLGDPSKNLLLAEVINII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDE---- 419 (472)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSH----
T ss_pred ccCccCccHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCC-ceEEEEEeCCh----
Confidence 122 25677888777666421 11 123345555556666666543 1 3334444 56777887642
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
....++++.+++ .||.+.|+. .+++|++++.. +++++++++++|++++++
T Consensus 420 --~~~~~~~~~l~~-~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 420 --SIRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp --HHHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 112357777775 599998852 56899988754 899999999999999875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=199.56 Aligned_cols=238 Identities=15% Similarity=0.099 Sum_probs=169.5
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHH-----
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRD----- 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~----- 151 (477)
.|++. |..+|++.+|++++ .+..++ ++|+++|+.+++.++++|||.|++++ |.|..+...
T Consensus 55 ~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g 123 (409)
T 3jzl_A 55 GYDDE-GRDTLERVYATVFK----------TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRK 123 (409)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSS
T ss_pred CCChh-HHHHHHHHHHHHhC----------CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhccc
Confidence 45554 57889999999986 234455 88999999999999999999999998 999988743
Q ss_pred -----HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC----CCCCcccCCCHHHHHHHHHHHHh
Q 011801 152 -----LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN----PSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 152 -----~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n----P~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
++.. |+++..+++++ ++.+|++++++++++ ++|+|++++ |+||||.+. ++++|+++|++
T Consensus 124 ~~~~~l~~~-G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~---~l~~I~~la~~ 191 (409)
T 3jzl_A 124 QGQGSLKDF-HIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIE---KIKEMIVFVKN 191 (409)
T ss_dssp SSSSCTGGG-TCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHH---HHHHHHHHHHH
T ss_pred chhhHHHHc-CCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccc---cHHHHHHHHHh
Confidence 3445 89999988764 578999999998854 799999999 999999875 48899999999
Q ss_pred --cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hcc--
Q 011801 223 --KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSS-- 296 (477)
Q Consensus 223 --~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~-- 296 (477)
+|+++|+|++|+..++...+ . ..+..++++|+||.+|.+| .+.||++++++ +.+.++. ...
T Consensus 192 ~~~~~~livD~a~~~~~~~~~p-~-----------~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~-li~~l~~~~~~~~ 258 (409)
T 3jzl_A 192 INPEVIVFVDNCYGEFVEYQEP-P-----------EVGADIIAGSLIKNPGGGLAKTGGYIAGKEA-LVDLCGYRLTTPG 258 (409)
T ss_dssp HCTTCEEEEECTTCTTTSSCCS-G-----------GGTCSEEEEETTSGGGTTTCSSCEEEEECHH-HHHHHHHHHSCTT
T ss_pred hCCCCEEEEeCCcccccccCCc-c-----------ccCCeEEEECccccCCccCCceEEEEEeCHH-HHHHHHHHhcccc
Confidence 99999999999865433222 1 1133488999999998555 44699999654 4444433 222
Q ss_pred cC--CCchHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc----eEEEEeecc
Q 011801 297 FG--LVSSQT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA----GLFFWMDLR 361 (477)
Q Consensus 297 ~~--~vs~~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~----g~~~~~~l~ 361 (477)
.+ ..+... +.++...+. .+..+.++..++...+.+.|+++|+++.+... .+.+.+.+.
T Consensus 259 ~g~~~g~~~~~~~~~l~gl~-------~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 259 IGREAGASLYSLLEMYQGFF-------LAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFH 323 (409)
T ss_dssp TGGGCCCCTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECS
T ss_pred ccccccccHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeC
Confidence 11 111111 222222221 13445667778889999999999998865422 124556665
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=200.70 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=169.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE---eCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHH------
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM---GGGATGANELIMFCLANPGDAFLVPS-PYYAAFDR------ 150 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~---t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~------ 150 (477)
.|+++ |..+|++.+|++++ .+..++ ++|+++|+..++.++++|||+|++++ |.|+++..
T Consensus 70 ~Y~~~-g~~~Le~~lA~l~g----------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~ 138 (427)
T 3hvy_A 70 GYNDI-GRDSLDRVYANIFN----------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDD 138 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred CCCch-hHHHHHHHHHHHhC----------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhcccc
Confidence 45555 67899999999986 344456 78889999999999999999999999 99988763
Q ss_pred -----HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeC----CCCCcccCCCHHHHHHHHHHHH
Q 011801 151 -----DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN----PSNPLGTTLDRDTLKSLVSFIN 221 (477)
Q Consensus 151 -----~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~n----P~NPtG~~~~~~~l~~l~~~~~ 221 (477)
.++.. |++++.++. .++.+|++++++++++ +.++|+|++++ |+||||.+. ++++|+++|+
T Consensus 139 ~~~~~~l~~~-G~~~~~v~~---~~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v~---dl~~i~~ia~ 207 (427)
T 3hvy_A 139 SKKVGSLREY-GVKYKMVDL---KDGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRIA---EIAEIIKSIR 207 (427)
T ss_dssp TCCSCCTGGG-TCEEEECCC---BTTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCHH---HHHHHHHHHH
T ss_pred chhhhHHHHc-CCEEEEecC---CCCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccHH---HHHHHHHHHH
Confidence 33444 999998887 2568999999999873 13899999999 999998764 5899999999
Q ss_pred h--cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-ccc
Q 011801 222 D--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-SSF 297 (477)
Q Consensus 222 ~--~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-~~~ 297 (477)
+ +|+++|+|++|+..++...+ . ..+..++++|+||.+|.+| .+.|||++++ .+.+.++.. ...
T Consensus 208 ~~~~g~~livD~a~~~~~~~~~p-~-----------~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~-~li~~l~~~~~~~ 274 (427)
T 3hvy_A 208 EVNENVIVFVDNCYGEFVEEKEP-T-----------DVGADIIAGSLIKNIGGGIATTGGYIAGKE-EYVTQATFRVTVP 274 (427)
T ss_dssp HHCSSSEEEEECTTCTTTSSSCG-G-----------GGTCSEEEEETTSGGGTTTCCSCEEEEECH-HHHHHHHHHHSCT
T ss_pred HhCCCCEEEEECCccccccCCCC-c-----------ccCCeEEEECCcccccccccceEEEEEECH-HHHHHHHHHhhcC
Confidence 9 89999999999865433221 1 1133488999999998444 4569999954 454444432 211
Q ss_pred CC---Cch-HH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce----EEEEeecc
Q 011801 298 GL---VSS-QT-QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG----LFFWMDLR 361 (477)
Q Consensus 298 ~~---vs~-~~-q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g----~~~~~~l~ 361 (477)
+. .++ +. ..++...+. .+..+.++..++...+.+.|+++|+++.+.... +.+.+.+.
T Consensus 275 ~~g~~~~~~~~~a~~~~~gl~-------~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 275 GIGGECGSTFGVMRSLYEGLF-------MAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp TTGGGCCCCTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECS
T ss_pred CcccccCCCHHHHHHHHHhHh-------HHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCC
Confidence 11 111 22 222222221 134456677788889999999999888654322 25666665
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=201.42 Aligned_cols=282 Identities=14% Similarity=0.160 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHH-hcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC-LANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~-l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
.++++.++++++ .+++++++++|++.+++.+..+ ..++||.|+++.|+|+.+...++. ..|++++.++
T Consensus 111 ~~~~~~la~~~g--------~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~ 182 (438)
T 1wyu_A 111 FEYQTMIAELAG--------LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLP 182 (438)
T ss_dssp HHHHHHHHHHHT--------SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHhC--------CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEc
Confidence 455666666654 4577889999999554444433 247899999999999988755432 2399999998
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecc--c-ccccccCCC
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDE--I-YAATVFSSP 241 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De--~-y~~~~~~~~ 241 (477)
.+ ++.+|+++ +. .++++|++++| ||||.+.+ +++|+++|+++|+++|+|- . |.. +.
T Consensus 183 ~~---~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~--~~-- 241 (438)
T 1wyu_A 183 LE---GGRTPLPE----VG------EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGV--LK-- 241 (438)
T ss_dssp CB---TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGT--BC--
T ss_pred Cc---CCccCHHH----hC------CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccC--cC--
Confidence 62 35677665 32 27999999999 99999997 8889999999999999552 2 321 11
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccC----CCCceEEEEEeCCHHHHHHH--------------------------
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMG----LPGFRVGIVYSFNDTVVNCG-------------------------- 291 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g----~~G~RvG~i~~~~~~i~~~~-------------------------- 291 (477)
..... +..+++.| +|.|| +.|.|+||++++++.+....
T Consensus 242 ---~~~~~--------g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~ 309 (438)
T 1wyu_A 242 ---PPGAY--------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQY 309 (438)
T ss_dssp ---CHHHH--------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHH
T ss_pred ---CCccC--------CCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccc
Confidence 11111 22255666 66554 45679999999765332210
Q ss_pred -HHhcccCCC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhc
Q 011801 292 -RKMSSFGLV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKE 366 (477)
Q Consensus 292 -~~~~~~~~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~ 366 (477)
+.......+ +......++..+.... +..+++..+++.++++++.+.|++. |+++..+. .+|.++.++...
T Consensus 310 ~r~~~~t~~~~~~~~~~a~~aa~~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~-- 384 (438)
T 1wyu_A 310 IRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK-- 384 (438)
T ss_dssp HHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS--
T ss_pred cchhcccCCccchHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCCC--
Confidence 000111111 1121111111122111 2235677788889999999999998 99887653 234333332111
Q ss_pred cCchHHHHHHHHHHHhcCeEE--eCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 367 KTLEGEIALWRTIVNDVKLNV--SPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 367 ~~~~~e~~l~~~ll~~~gI~v--~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
...++.+.+.+ .||.+ .+|..|. ++++|+|+... +++++++++++|++++
T Consensus 385 ----~~~~~~~~L~~-~gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 385 ----DPEAVRRALAE-RGFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ----CHHHHHHHHHH-TTCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHH-CCceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 12256677765 59998 7777664 67999999854 8999999999998764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=206.63 Aligned_cols=311 Identities=12% Similarity=0.073 Sum_probs=195.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-HhhhCCcEEEEEec
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-LSWRTGVQIVPVHC 165 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-~~~~~g~~~~~v~~ 165 (477)
-..++++.+|++++ .+ ..+++++|+++++.+++.+++++||.|+++.|+|..+... +... |++++.++.
T Consensus 174 ~i~e~e~~lA~~~g--------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~-Ga~~v~v~~ 243 (730)
T 1c4k_A 174 PAVAAEKHAARVYN--------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHHTT--------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECE
T ss_pred HHHHHHHHHHHHHC--------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHC-CCEEEEEeC
Confidence 36899999999987 22 4588999999999999999999999999999999988877 6665 999988876
Q ss_pred cCCCCcc----cCHHHH-----HHHHHHH-HH--hCCCe-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccc
Q 011801 166 DISNNFK----ITREAL-----EAAYERA-QE--ASINI-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEI 232 (477)
Q Consensus 166 ~~~~~f~----i~~~~l-----~~~~~~~-~~--~~~~~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~ 232 (477)
+. ++|. +|+++| ++++++. .+ ...++ |+|++++| ||+|.+.+ +++|+++|+++|++||+||+
T Consensus 244 ~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeA 318 (730)
T 1c4k_A 244 NR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSA 318 (730)
T ss_dssp EE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECT
T ss_pred Cc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcc
Confidence 53 2343 688888 6666431 00 01122 89999999 69999988 88999999999999999999
Q ss_pred cccc-ccCCCCcccHHHh-hhhccCCCCcEEEEecCCcccCCCCceE-EEEEeCCHHH--------HHHHHH---hcccC
Q 011801 233 YAAT-VFSSPKFTSVAEV-IQEMDCNRDLIHIIYSLSKDMGLPGFRV-GIVYSFNDTV--------VNCGRK---MSSFG 298 (477)
Q Consensus 233 y~~~-~~~~~~~~s~~~~-~~~~~~~~~~viiv~SlSK~~g~~G~Rv-G~i~~~~~~i--------~~~~~~---~~~~~ 298 (477)
|++. .|.+. ......+ .++.+.+..+++++.|+||.+ +|++. |+++.+++.+ ....+. +...+
T Consensus 319 h~~~~~f~~~-~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~st 395 (730)
T 1c4k_A 319 WVGYEQFIPM-MRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMST 395 (730)
T ss_dssp TCCGGGSSGG-GGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCS
T ss_pred cccccccCcc-cCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCC
Confidence 9753 34321 1000001 000011234678999999986 56664 5665544332 111111 11112
Q ss_pred CCchHHHHH---HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh--CCCeEecCC----------------------
Q 011801 299 LVSSQTQYL---LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ--VGINCLKSN---------------------- 351 (477)
Q Consensus 299 ~vs~~~q~~---~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~--~gi~~~~~~---------------------- 351 (477)
+.+.....+ +..++.... -.+..+++.+..+.+.+.|.+ .|+++..+.
T Consensus 396 sp~~~~iaal~aA~~~l~~~~-----g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 396 SPFYPMYAALDVNAAMQEGEA-----GRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp SCCHHHHHHHHHHHHHHSHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred CCcHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 233332222 233333211 123345566667778888877 477765432
Q ss_pred ---------------ce-EE-----EEeeccch------hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE
Q 011801 352 ---------------AG-LF-----FWMDLRHL------LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC 404 (477)
Q Consensus 352 ---------------~g-~~-----~~~~l~~~------~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~ 404 (477)
.+ ++ +.+..+.. .....+.. .++.+.| .++||.+... +.+++|++
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~-~~l~~~L-~e~GI~v~~~------~~~~ir~~ 542 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPA-TIVANYL-RDHGIIPEKS------DLNSILFL 542 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCH-HHHHHHH-HHTTCCCSEE------CSSEEEEE
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCH-HHHHHHH-HHCCcEEEEC------CCCeEEEE
Confidence 11 12 34555421 00001111 2344544 4559987643 35679998
Q ss_pred eccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 405 FANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 405 ~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
++.. ++++++.++++|+++.+.+.
T Consensus 543 ~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 543 MTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 8653 88999999999999987653
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=204.13 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=134.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
..++++.++++++ . .+.+++++|+++|+.+++.++++|||.|+++.|+|..+...+... |++++.++.+.
T Consensus 207 v~~~ee~la~l~G--------~-d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~-G~~~v~v~~~~ 276 (755)
T 2vyc_A 207 FGESEKYAARVFG--------A-DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLT-GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHH-CCEEEEECCCB
T ss_pred HHHHHHHHHHHhC--------C-CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCCC
Confidence 5788888888886 2 246889999999999999999999999999999999988888877 99999998764
Q ss_pred CCCcc----c-----CHHHHHHHHHHHH----HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 168 SNNFK----I-----TREALEAAYERAQ----EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 168 ~~~f~----i-----~~~~l~~~~~~~~----~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
+ +|. + |+++|++++++.. ..+.++++++++|| ||+|.+.+ +++|+++|+++|++||+||+|+
T Consensus 277 ~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~ 351 (755)
T 2vyc_A 277 N-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_dssp C-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTC
T ss_pred C-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCc
Confidence 2 343 4 9999999997521 12345568999998 79999988 8889999999999999999997
Q ss_pred cc-ccCCC--CcccHHHhhhhccCCCCcEEEEecCCcccCCCCce-EEEEEeCCH
Q 011801 235 AT-VFSSP--KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR-VGIVYSFND 285 (477)
Q Consensus 235 ~~-~~~~~--~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R-vG~i~~~~~ 285 (477)
+. .|... +...+ .. ...+...++++++.|+||.+ +|++ .|+++.+++
T Consensus 352 ~~~~~~~~~~~~~~~-~g-~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 352 GYARFNPIYADHYAM-RG-EPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_dssp TTGGGCGGGTTSSSS-CS-CCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECC
T ss_pred hhcccCcccCCcchh-cC-CcCCccCCCeEEEECccccc--cCcCCeeeeeecCc
Confidence 53 23321 11111 11 00011235778999999986 5666 677776544
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=192.35 Aligned_cols=254 Identities=17% Similarity=0.146 Sum_probs=168.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccchHHHHh----------hhC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPS-PYYAAFDRDLS----------WRT 156 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~~~~~~~----------~~~ 156 (477)
..++++.++++++ ......+++++ ++++|+..++.++++|||.|++++ |.|+.+...+. ..
T Consensus 67 ~~~l~~~la~~~g------~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~- 138 (431)
T 3ht4_A 67 RDTLEKVYADVFG------AEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY- 138 (431)
T ss_dssp HHHHHHHHHHHTT------CSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG-
T ss_pred HHHHHHHHHHHhC------CCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHc-
Confidence 3455555555554 11112233355 668999999999999999999998 99998876543 34
Q ss_pred CcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccc
Q 011801 157 GVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT-NPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIY 233 (477)
Q Consensus 157 g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~-nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y 233 (477)
|++++.++.+. ++.+|+++|++++++ ++++|+++ +|+||+|.+.+.+++++|+++|++ +|+++|+||+|
T Consensus 139 G~~~~~v~~~~--~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~ 210 (431)
T 3ht4_A 139 NIGYNAVPLTE--GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCY 210 (431)
T ss_dssp TCEEEECCBCT--TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred CCEEEEeCCCC--CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 99999998864 478999999998864 89999999 599999999999999999999999 99999999999
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHHHHhcccCC---C-chHH-HHH
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCGRKMSSFGL---V-SSQT-QYL 307 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~~~~~~~~~---v-s~~~-q~~ 307 (477)
+.+.+...+ . ..+..++++|+||.+|- .+...||++++++.+..........+. . +++. +.+
T Consensus 211 ~~~~~~~~~-~-----------~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~ 278 (431)
T 3ht4_A 211 GEFIEEQEP-C-----------HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQE 278 (431)
T ss_dssp CTTSSSCCG-G-----------GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHH
T ss_pred hhhccCCCc-c-----------ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHH
Confidence 976543321 1 11234889999999652 113339999965444333332222111 1 1111 122
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+...+. .+....+++.++.+.+.+.|+++|+++.+.. .++.+.+.++.. +.-.++++.+...
T Consensus 279 ~~~~l~-------~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 279 MYQGFF-------LAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHHT
T ss_pred HHhHhh-------hHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 222221 1344556677788889999999998775432 223556666531 2223456655543
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-23 Score=212.18 Aligned_cols=337 Identities=12% Similarity=0.085 Sum_probs=205.4
Q ss_pred CCCCcccccccccccc--c--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLAENQ--L--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~~n~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+... + +.+.+.+.+.+..+. + ....|+. ....+|.+.+++++.
T Consensus 96 D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~------~-----~~~~~~~-~~~~~Lae~L~~~~p--------- 154 (465)
T 2yky_A 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV------G-----LNLSTQT-ENEALFAEAVCDRFP--------- 154 (465)
Confidence 3445668998776543 3 345566655553210 1 0123432 234677777777662
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHh---hhCCc--EEEEEeccCCCCcccCHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLS---WRTGV--QIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~---~~~g~--~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
..+.+++++++++|++.+++... ..++.|++.+++|++....+. ...|+ .++.++. -|+++|++++
T Consensus 155 ~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l 227 (465)
T 2yky_A 155 SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLL 227 (465)
Confidence 25789999999999999998752 345899999999987654332 01133 2333332 2688898888
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCC-CHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTL-DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~-~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
++. +.++++|++....+++|.+. +.+.+++|.++|+++|+++|+||+|. +.. ++. ... +. .+...
T Consensus 228 ~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~-~a~-~~-------~gv~p 293 (465)
T 2yky_A 228 KRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGG-GAQ-EM-------LGISA 293 (465)
Confidence 742 23677766654356699655 57789999999999999999999998 522 221 111 11 11222
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHH------HhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR------KMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHN 335 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~------~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~ 335 (477)
-+.||||.+| .|+|+||++++++.+..... ........++++|.++.+.|+.-+ + ....+++.++.++
T Consensus 294 Di~t~sK~lg-~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~--~---~~~~~~~~~~~~~ 367 (465)
T 2yky_A 294 DLTTLGKYIG-GGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY--T---RQAASDLSASGDR 367 (465)
Confidence 3459999999 59999999996654433222 011112366778887766665311 0 1123334444444
Q ss_pred HHHHHhhC----CCeEecCCceEEEEeeccc-hhhc------cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEE
Q 011801 336 FTKGLEQV----GINCLKSNAGLFFWMDLRH-LLKE------KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVC 404 (477)
Q Consensus 336 l~~~L~~~----gi~~~~~~~g~~~~~~l~~-~~~~------~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~ 404 (477)
+.++|++. ++....+..|.++|+.++. .... ...+....++..+++ .||.+.|+. |.. ++
T Consensus 368 l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~~-------~s 438 (465)
T 2yky_A 368 FRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MYA-------LS 438 (465)
Confidence 55544443 4333334567899998864 1100 000112356677774 599999875 321 56
Q ss_pred eccCCHHHHHHHHHHHHHHHhhhh
Q 011801 405 FANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 405 ~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+. .+++++++++++|++++++.+
T Consensus 439 ~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 439 LE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 54 489999999999999987643
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=183.77 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=128.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
-..++++.+|++++. ...+++++|++.|+..++.++++|||.|+++.++|..+...+... |++++.++.+
T Consensus 196 ~i~eaE~~lA~~fGa---------~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~ls-Ga~pv~v~~~ 265 (715)
T 3n75_A 196 PHKEAEQYIARVFNA---------DRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMS-DVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHHTC---------SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHS-CCEEEEECCC
T ss_pred HHHHHHHHHHHHhCC---------CCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecc
Confidence 367999999999972 345778899899999999999999999999999999999888876 9999999876
Q ss_pred CCCCccc---------CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 167 ISNNFKI---------TREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 167 ~~~~f~i---------~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
. +.|.+ |+++|++++++... ..+++++++++| ||+|.+++ +++|+++|++++ +|+||+|++.+
T Consensus 266 ~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~ 337 (715)
T 3n75_A 266 R-NAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYT 337 (715)
T ss_dssp B-CTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTG
T ss_pred c-cccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEcccccccc
Confidence 4 35654 89999999975211 012348999999 99999999 666777776653 78999998653
Q ss_pred -cCCCCcccHHHhhhhccCCCCcE-EEEecCCcccCCCCc-eEEEEEeCCH
Q 011801 238 -FSSPKFTSVAEVIQEMDCNRDLI-HIIYSLSKDMGLPGF-RVGIVYSFND 285 (477)
Q Consensus 238 -~~~~~~~s~~~~~~~~~~~~~~v-iiv~SlSK~~g~~G~-RvG~i~~~~~ 285 (477)
|.. .+.....+.. +...+.+ +++.|+||+++ |+ ..|+++++++
T Consensus 338 ~f~~-~~~~~~al~~--g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~ 383 (715)
T 3n75_A 338 NFSP-IYEGKCGMSG--GRVEGKVIYETQSTHKLLA--AFSQASMIHVKGD 383 (715)
T ss_dssp GGSG-GGTTSSTTSS--SCCTTCEEEEEECHHHHSS--CCTTCEEEEEESC
T ss_pred ccCC-cccccccccc--CcCCCEEEEEEeccccccc--CCCCeeEEEeCch
Confidence 332 1111111100 0012443 56899999975 44 3588887654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=167.59 Aligned_cols=289 Identities=13% Similarity=0.128 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCC-CcEEE-eCChHHHHHHHHHHhcCC--CCeEEEcCCCccc--hHHHHhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDP-DRIVM-GGGATGANELIMFCLANP--GDAFLVPSPYYAA--FDRDLSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~-~~i~~-t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~--~~~~~~~~~g~~~~ 161 (477)
+.+.|+.++++++ .++ ++|++ |+|+|+++++++..+..+ ||++++..-.+.+ +...++.. |..++
T Consensus 60 ~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~-G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLA--------VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKF-GTINI 130 (377)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTT-SEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHh-CCceE
Confidence 4677888888886 333 57888 589999999999998765 8998876655433 22334444 87777
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++++. ++.+++++++.++. .++++|.+++.+|.||++.+. +|+++|+++++|.+.+ +...
T Consensus 131 ~~~~~~--~~~~~~~~~~~~i~------~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~---~g~~ 191 (377)
T 3e77_A 131 VHPKLG--SYTKIPDPSTWNLN------PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSN---FLSK 191 (377)
T ss_dssp CSCCCS--SSCSCCCGGGCCCC------TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTT---TTSS
T ss_pred EeccCC--CcCCCCChHHhccC------CCccEEEEeCccCchheEchh--------hhccCCCEEEEEcccc---cCCC
Confidence 666653 33455665554432 378999999888999999994 3678899999999997 4433
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH-------------HHHHHHhcccCCCchHHHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV-------------VNCGRKMSSFGLVSSQTQYLL 308 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i-------------~~~~~~~~~~~~vs~~~q~~~ 308 (477)
+ ..+.+ .+ +++.|..|.+|.+| +|+++..++.+ .........+++.+...-+++
T Consensus 192 ~-id~~~--------~~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l 258 (377)
T 3e77_A 192 P-VDVSK--------FG--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVM 258 (377)
T ss_dssp C-CCGGG--------CS--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHH
T ss_pred C-Cchhh--------cC--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHH
Confidence 3 33222 23 36688899999778 77777755432 111111223445555555555
Q ss_pred HHhcCChhhHHH--HHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----CceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 309 ASMLSDDEFVDN--FLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 309 ~~~L~~~~~~~~--~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
...|+ ++.+ -+++..++.++..+++.++|++. |+.+.+. .++..+.+.++.......+ +..+...+.
T Consensus 259 ~~al~---~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~--~~~~l~~l~- 332 (377)
T 3e77_A 259 GLVLE---WIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL--EKRFLDKAL- 332 (377)
T ss_dssp HHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHH--HHHHHHHHH-
T ss_pred HHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhH--HHHHHHHHH-
Confidence 55543 2222 25667778888889999999988 7764321 2233455666642110111 113444444
Q ss_pred hcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 382 DVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 382 ~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
++||.+++|.. ..+++|+|+.+. ++++++.+++.|+++++++
T Consensus 333 ~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 333 ELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 56999988853 245699999875 8999999999999999763
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=165.66 Aligned_cols=287 Identities=12% Similarity=0.067 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccC-CCcEEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFD-PDRIVM-GGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIV 161 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~-~~~i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~ 161 (477)
.-+.+.|+.+|++++ .+ +++|++ |+|+|+++++++..++.+||++++..-.+.+ +...++.. | ++.
T Consensus 72 ~~~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~-G-~v~ 141 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLN--------IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKY-C-APQ 141 (386)
T ss_dssp -CCHHHHHHHHHHHT--------CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-S-EEE
T ss_pred HHHHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHh-C-CeE
Confidence 347899999999997 32 346888 6999999999999999999998754433322 22334444 8 888
Q ss_pred EEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 162 PVHCD-ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 162 ~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
.++++ ...++.+++++++.++. .++++|.+++-+|.||++ .+ +++|. +|+++++|.+.+ +.
T Consensus 142 ~v~~~~~~~G~~~~~~~~~~~l~------~~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs---~g 204 (386)
T 3qm2_A 142 IIDAKITVDGKRAVKPMREWQLS------DNAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSST---IL 204 (386)
T ss_dssp EEECEEEETTEEEECCGGGCCCC------TTCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTT---TT
T ss_pred EEecCcccCCCCCCchHHHhhcC------CCCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEcccc---cC
Confidence 88876 12344366677766554 378899999888899996 66 33342 799999999997 43
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-------------HHHHHhcccCCCchHHHH
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-------------NCGRKMSSFGLVSSQTQY 306 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-------------~~~~~~~~~~~vs~~~q~ 306 (477)
..+ ..+.+ .+ +++.|..|.+|.+| +|+++..++.+. ........+++.+.....
T Consensus 205 ~~p-idv~~--------~~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~ 271 (386)
T 3qm2_A 205 SAP-LDVSR--------YG--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWY 271 (386)
T ss_dssp SSC-CCGGG--------CS--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHH
T ss_pred CCC-CCccc--------cC--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHH
Confidence 333 33222 23 35689999999777 888888655321 011111123334444444
Q ss_pred HHHHhcCChhhHHHH--HHHHHHHHHHHHHHHHHHHhhCCCe-Ee-cC--CceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 307 LLASMLSDDEFVDNF--LVETSKRLAKRHHNFTKGLEQVGIN-CL-KS--NAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 307 ~~~~~L~~~~~~~~~--~~~~~~~l~~r~~~l~~~L~~~gi~-~~-~~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
++..+++ ++.+. +++..++.++..+++.++|++.|+. .. .+ .....+.+.++.. ..+ .++... +
T Consensus 272 ~l~~Al~---~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~----~~~--~~~~~~-L 341 (386)
T 3qm2_A 272 LSGLVFK---WLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN----TLD--KVFLEE-S 341 (386)
T ss_dssp HHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG----GGH--HHHHHH-H
T ss_pred HHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc----ccc--HHHHHH-H
Confidence 4444443 22222 5677778888889999999988752 21 11 1223455666631 111 134444 5
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+++||.+++|..+ .+.+|+|+.+. ++++++.+++.|+++.++
T Consensus 342 ~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 342 FAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp HHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 6779999887543 24599999875 899999999999999876
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=158.00 Aligned_cols=331 Identities=14% Similarity=0.161 Sum_probs=201.0
Q ss_pred CCccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCC--CCCcHHHHHHHHHHHhcccCCCCccC-CC
Q 011801 36 NPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQD--YHGLPEFRQAVAKFMGKGRGGRVTFD-PD 112 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~-~~ 112 (477)
|+..++.|+-+..+++...++.......+. ...+.+..+ ...... ..-+.+.|+.++++++ .+ ++
T Consensus 2 ~~~~~~~f~pgpt~~~~~V~~a~~~~~~~~---~~~~~s~~~-~~hr~~~~~~~~~~~r~~la~ll~--------~~~~~ 69 (361)
T 3m5u_A 2 NAMRKINFSAGPSTLPLEILEQAQKELCDY---QGRGYSIME-ISHRTKVFEEVHFGAQEKAKKLYE--------LNDDY 69 (361)
T ss_dssp --CCCEECCSSSCCCCHHHHHHHHHTSSSG---GGSSSCGGG-SCSSSHHHHHHHHHHHHHHHHHHT--------CCTTE
T ss_pred CccceEeecCCCCCCcHHHHHHHHHHHHhc---ccCCceeec-cCCCCHHHHHHHHHHHHHHHHHhC--------CCCCc
Confidence 455667788777777766655544432110 000100000 000000 1125677788888886 33 45
Q ss_pred cEEE-eCChHHHHHHHHHHhcCCCCeEE-EcCCCccc-hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 113 RIVM-GGGATGANELIMFCLANPGDAFL-VPSPYYAA-FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 113 ~i~~-t~G~t~al~~i~~~l~~~Gd~vl-v~~P~y~~-~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+|++ |+|+|+++++++..+. +||+++ +.+-.|.. +...++.. |+++..++++..+.+.++++. + ++
T Consensus 70 ~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~-G~~v~~~~~~~~g~~~~~~~~-~--l~------ 138 (361)
T 3m5u_A 70 EVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQIL-GVNVKTVASSEESNFDHIPRV-E--FS------ 138 (361)
T ss_dssp EEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHT-TCCEEEEEECTTTTSCSCCCC-C--CC------
T ss_pred eEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHc-CCceEEEecccCcCCCcCChh-h--cC------
Confidence 7887 9999999999999988 888653 22223321 22334444 899988888765444344444 3 43
Q ss_pred CCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcc
Q 011801 190 INIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269 (477)
Q Consensus 190 ~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~ 269 (477)
.++++|.+++.+|.||+..+. +++ +|+++++|.+.+ +...+ ..+. +..+++.|..|.
T Consensus 139 ~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~---~g~~~-id~~----------~~d~~~~s~~K~ 195 (361)
T 3m5u_A 139 DNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSD---FFSRK-VDFS----------NIALFYGGVQKN 195 (361)
T ss_dssp TTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGG---TTSSC-CCCT----------TEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcccc---cCCCC-CCcc----------cCCEEEEechhc
Confidence 278999999888999998772 233 499999999997 43322 2211 223677899999
Q ss_pred cCCCCceEEEEEeCCHHHHHHHH--------------HhcccCCCchHHHHHHHHhcCChhhHHHH--HHHHHHHHHHHH
Q 011801 270 MGLPGFRVGIVYSFNDTVVNCGR--------------KMSSFGLVSSQTQYLLASMLSDDEFVDNF--LVETSKRLAKRH 333 (477)
Q Consensus 270 ~g~~G~RvG~i~~~~~~i~~~~~--------------~~~~~~~vs~~~q~~~~~~L~~~~~~~~~--~~~~~~~l~~r~ 333 (477)
+|.+| +|+++..++.+..... ....+++.+....+++..+|+ ++.+. +++..++.++..
T Consensus 196 ~gp~G--~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~---~l~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 196 AGISG--LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD---WLLNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp SSCTT--CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH---HHHTTTCHHHHHHHHHHHH
T ss_pred cCCCc--cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHH
Confidence 99777 7888886654432211 111234445444444444443 11222 466677788888
Q ss_pred HHHHHHHhhCC-C-eEecC---CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC
Q 011801 334 HNFTKGLEQVG-I-NCLKS---NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM 408 (477)
Q Consensus 334 ~~l~~~L~~~g-i-~~~~~---~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~ 408 (477)
+++.++|++++ + ..... .....+.+.++.. ..++ + ++. ..++++||.+++|... .+.+|+|+.+.
T Consensus 271 ~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~-~-~~~-~~L~~~gI~~~~g~~~----~g~iRiS~~~~ 340 (361)
T 3m5u_A 271 TMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE-P-LFV-KEAEEAGMIGLKGHRI----LGGIRASIYNA 340 (361)
T ss_dssp HHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH-H-HHH-HHHHHTTEECCBCCTT----TCSEEEECCTT
T ss_pred HHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh-H-HHH-HHHHHCCCEEecCCCc----cCeEEEEccCC
Confidence 99999999886 5 44321 1222455566531 0111 1 344 3456779999887532 24599999875
Q ss_pred -CHHHHHHHHHHHHHHHhhh
Q 011801 409 -DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 409 -~~e~l~~~l~~l~~~~~~~ 427 (477)
++++++.+++.|+++.+++
T Consensus 341 ~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 341 LNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998763
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-15 Score=151.87 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=191.9
Q ss_pred CCCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.++ .+.+.+++.+.-+. + .....+ ..-..++.+.+++.+.
T Consensus 83 D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~------~----~~~~~~--~~~~~~lae~l~~~~p--------- 141 (454)
T 4ao9_A 83 DADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQG------G----INLTGH--NLLEGRLARLICERFP--------- 141 (454)
T ss_dssp ETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHT------C----SCCCSE--ESSHHHHHHHHHHHST---------
T ss_pred ECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhc------C----CCccCC--cHHHHHHHHHHHHhCC---------
Confidence 4556678998543 44453 46666655542110 0 011111 1223566666666653
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhC-----CcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRT-----GVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~-----g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
..+.+++++++++|++.+++... ...++|+...-+|.+......... ......+|.+ |.+++++.+
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-------d~~~l~~~l 214 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-------DAQTARAQI 214 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-------CHHHHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-------hHHHHHHHH
Confidence 35789999999999999987642 223678888888877442211111 1233333321 688898888
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~vi 261 (477)
++. +.++.+|++.--....|.+ .+++.|++|.++|++||+++|+||+..+ ..+..+. .+.. +..+| +
T Consensus 215 ~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a--~e~~---gv~PD--i 282 (454)
T 4ao9_A 215 ERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGL--ANKL---GIRSD--L 282 (454)
T ss_dssp HHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCH--HHHH---TCCCS--E
T ss_pred hhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccc--hhcc---CCCCc--E
Confidence 753 3467776664334556755 4677799999999999999999999974 2333322 1221 22344 2
Q ss_pred EEecCCcccCCCCceEEEEEeCCHHHHHHHHH-hccc-----CCCchHHHHHHHHh---cCChhhHHHHHHHHHHHHHHH
Q 011801 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-MSSF-----GLVSSQTQYLLASM---LSDDEFVDNFLVETSKRLAKR 332 (477)
Q Consensus 262 iv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-~~~~-----~~vs~~~q~~~~~~---L~~~~~~~~~~~~~~~~l~~r 332 (477)
-+++|.+| .|+.+|.+++..+ +.+.+.. ...+ ...++++..++.+. +.++++ .+.+.+..++++++
T Consensus 283 --~t~gK~lg-gG~Piga~~~~~e-i~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~-~~~~~~~g~~l~~~ 357 (454)
T 4ao9_A 283 --TTLGKYIG-GGMSFGAFGGRAD-VMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA-AGALAERGEALRAR 357 (454)
T ss_dssp --EEEEGGGG-TTSSCEEEEECHH-HHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHH
T ss_pred --EEeccccC-CCCcceeeeeHHH-HHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHH
Confidence 27789998 8999999999554 4433321 1111 12355555554444 445444 22233333444433
Q ss_pred HHHHHHHHhhCCCeEecCCceEEEEeeccch-----hhccCch--HHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 333 HHNFTKGLEQVGINCLKSNAGLFFWMDLRHL-----LKEKTLE--GEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 333 ~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~-----~~~~~~~--~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
.+.+ +++.++...-..-|+++.+.+... ......+ ....++..++++ ||.+.|. +.+.++.
T Consensus 358 L~~l---~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s~ 425 (454)
T 4ao9_A 358 LNAL---CANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLSL 425 (454)
T ss_dssp HHHH---HHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECCT
T ss_pred HHHH---HhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEeC
Confidence 2222 233343222222345555555321 1111111 122455666654 9998764 2344454
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhhc
Q 011801 406 ANMDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 406 ~~~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
. ++++++|+++++|++++.++..
T Consensus 426 ~-~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 426 P-LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp T-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred C-CCHHHHHHHHHHHHHHHHhccc
Confidence 4 5999999999999999987543
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-13 Score=136.35 Aligned_cols=316 Identities=15% Similarity=0.158 Sum_probs=189.5
Q ss_pred HHHHHHH-HHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 90 EFRQAVA-KFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP----GDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 90 ~lr~aia-~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~----Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
.|-+.++ +|+.+. | ++ .....++++|+|.++.+++.+.+++ ||.|+++.-++-.+...+... |++++.++
T Consensus 116 ~ltn~l~ld~L~~~-G--~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~-Gl~Pv~V~ 190 (501)
T 3hl2_A 116 KITNSLVLDIIKLA-G--VH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA-GFEPVVIE 190 (501)
T ss_dssp HHHHHHHHHHHHHT-T--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHc-C--CC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc-CCeEEEEe
Confidence 4444444 455543 5 22 2346899999997777776666553 499999999999999998887 99988887
Q ss_pred cc-CCCCcccCHHHHHHHHHHHHHhCC-CeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 165 CD-ISNNFKITREALEAAYERAQEASI-NIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 165 ~~-~~~~f~i~~~~l~~~~~~~~~~~~-~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
.. ..+.+.+|++++++++++. +. .+.+|+.+.|.|-.|.+-+ +++|+++|++||+++++||+|....
T Consensus 191 p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~----- 259 (501)
T 3hl2_A 191 NVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQS----- 259 (501)
T ss_dssp EEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTC-----
T ss_pred eeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhh-----
Confidence 52 1236889999999999875 22 3334444444454445556 9999999999999999999997532
Q ss_pred cccHHHhhhhccCCCC-cEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 243 FTSVAEVIQEMDCNRD-LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~-~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
.....+..+. ...+ ...++.|.+|.+-+| +..|.+...++.+.+.+....+....++++..+...++.-+ .+.
T Consensus 260 -~~~~~lp~sA-~~~GrAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lG---r~G 333 (501)
T 3hl2_A 260 -SKCMHLIQQG-ARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG---SNG 333 (501)
T ss_dssp -HHHHHHHHHH-HHHSCCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHH---HHH
T ss_pred -hhhhhhHHHH-HhcCCCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---HHH
Confidence 1111111100 0112 446788999998544 44456667676655555444332223444444555555433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC----CCeEecCC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCe---E-EeCCC-
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV----GINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKL---N-VSPGS- 391 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI---~-v~pg~- 391 (477)
+++..++..+..++|.+.|+++ |-+++... ...-+-+.+...... ....-.++-..|.. .+| . |.+|.
T Consensus 334 y~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~-~~~~~t~~gs~Lf~-r~vsG~Rvv~~~~~ 411 (501)
T 3hl2_A 334 YKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH-RDKAVTQLGSMLFT-RQVSGARVVPLGSM 411 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT-TSCHHHHHHHHHHH-TTCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc-ccccHHHHHHHHHh-cCCCcceeecCCCc
Confidence 3555555566667777777653 54554332 223445566543111 11112233333433 344 3 45555
Q ss_pred ---------CCCCCC----CCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 392 ---------SFQCTE----PGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 392 ---------~f~~~~----~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.|+... -.++=+.-+- ++.++++.++++|.+++.+.+.
T Consensus 412 ~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp EEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 454321 2366554432 5999999999999999976543
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-13 Score=132.55 Aligned_cols=304 Identities=15% Similarity=0.151 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH-----hh--hC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD----RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL-----SW--RT 156 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~----~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~-----~~--~~ 156 (477)
..++.....+...+.+| .+.. ||-.-+| +.|+..++.+|++|||+|+..+....++..-- .. ..
T Consensus 98 vD~iE~la~~rak~lF~----a~~A~w~VNVQP~SG-s~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~s 172 (490)
T 3ou5_A 98 VDEIELLCQRRALEAFD----LDPAQWGVNVQPYSG-SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT 172 (490)
T ss_dssp HHHHHHHHHHHHHHHTT----CCTTTEEEECCCSSH-HHHHHHHHHHHCC-CCCEECBC---------------------
T ss_pred HHHHHHHHHHHHHHHhC----CCccccCCCCCcCCH-HHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccc
Confidence 44555555555666655 3444 4555555 67999999999999999999998877653211 00 11
Q ss_pred C--cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 157 G--VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 157 g--~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
| .+.++++++. .+..||.+++++..++. ++|+|+...-.+| ..++ .+++.++|.+.|.+|++|-++.
T Consensus 173 g~~~~~~~Y~vd~-~t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~--r~id---~~~~reIAd~vGA~Lm~DmAHi 241 (490)
T 3ou5_A 173 SIFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYA--RLID---YARMREVCDEVKAHLLADMAHI 241 (490)
T ss_dssp -------CBCEET-TTTEECHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred cccccccccccCC-CCCcccHHHHHHHHhhc-----CCCeEEECCccCc--cccC---HHHHHHHHhhcccEEEechhhh
Confidence 2 2455666664 35689999999988876 8998776533333 3455 6667777779999999999985
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHhcccCCC
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKMSSFGLV 300 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~~~~~~v 300 (477)
.....+.-+.+.... ..++..|.+|+| +|-|-|.|++.++ .+.+.+.+.--.+..
T Consensus 242 aGLVA~g~~psP~~~---------ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~q 310 (490)
T 3ou5_A 242 SGLVAAKVIPSPFKH---------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQ 310 (490)
T ss_dssp HHHHHTTSSCCGGGT---------CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTC
T ss_pred hhhhcccccCCcccc---------ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCcccc
Confidence 332222222222211 236788999998 8999999998653 233333332222222
Q ss_pred -chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC-ceEEEEeeccchhhccCchHHHHHHHH
Q 011801 301 -SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN-AGLFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 301 -s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
++..-.+++.+..-.+......++..+++.++.+.|.+.|.+.|+++.... ..-.++++++..- +.. ..+..
T Consensus 311 ggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g----~tG--~~ae~ 384 (490)
T 3ou5_A 311 GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG----LDG--ARAER 384 (490)
T ss_dssp SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT----CCH--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccC----CCH--HHHHH
Confidence 222222222222211111223456677788899999999999999887422 2346778887521 111 24567
Q ss_pred HHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHh
Q 011801 379 IVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 379 ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~ 425 (477)
+|++.||.+. |+.. .+..+..+||+... +.+++++++.+-|.+++.
T Consensus 385 ~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 385 VLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 7888899764 5542 22235679999843 468999999999988875
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-13 Score=137.87 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=195.6
Q ss_pred CCCCCCccccccccc--ccccc--HHHHHHHHHhCCCCccccccccccccccccc-CCCCCcHHHHHHHHHHHhcccCCC
Q 011801 32 HPTQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIF-QDYHGLPEFRQAVAKFMGKGRGGR 106 (477)
Q Consensus 32 ~~~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~g~~ 106 (477)
..+.+.+..||+..+ .+.++ .+.+.+++++..+ .+.....+ .+.....+|-+.+++....
T Consensus 58 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~----------~~~~~~~~~~~~~~~~~lae~L~~~~p~----- 122 (456)
T 4atq_A 58 IRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAA----------HFTHTCFMVTPYEGYVAVTEQLNRLTPG----- 122 (456)
T ss_dssp EEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH----------HCSCCTTTTSCCHHHHHHHHHHHHHSSC-----
T ss_pred EEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHh----------hccCcccCccCcHHHHHHHHHHHHhCCC-----
Confidence 334556678998554 45553 4666666654211 00011111 1122223344444443310
Q ss_pred CccCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCC-------------cEEEEEeccC----
Q 011801 107 VTFDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCDI---- 167 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~~---- 167 (477)
-..+++++++++++|++.+++.- ......|+...-+|++....+...++ ..+..+|...
T Consensus 123 --~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 200 (456)
T 4atq_A 123 --DHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFRE 200 (456)
T ss_dssp --SSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGC
T ss_pred --CCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceeccccccccc
Confidence 12457999999999999998763 22347888888888875432211111 1234444321
Q ss_pred CCCcccCHHHHHHHHHHHHH--hCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 168 SNNFKITREALEAAYERAQE--ASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~--~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.....-+.+.+++.++...+ .+.++.+|++.--..-.|.+ .+++-+++|.++|++||+++|.||+..++.-.+..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a 280 (456)
T 4atq_A 201 ENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFA 280 (456)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcccccc
Confidence 01111134555555443322 13367776665334455654 5667899999999999999999999998644444332
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcC---ChhhH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLS---DDEFV 318 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~---~~~~~ 318 (477)
. +. .+..+| ++ +++|.+| .|+.+|.+++.++ +.+..... .+|+ .++++..++.+.|+ +.++
T Consensus 281 ~--e~---~gv~PD--iv--t~gK~lg-gg~P~~av~~~~~-i~~~~~~~~~~~Tf~-gnpla~aaala~L~~i~~~~l- 347 (456)
T 4atq_A 281 V--DH---EGVVPD--II--TMAKGIA-GGLPLSAITGRAD-LLDAVHPGGLGGTYG-GNPVACAAALAAIDTMEQHDL- 347 (456)
T ss_dssp G--GG---TTCCCS--EE--EECGGGG-TTSSCEEEEEEHH-HHTTSCTTSSCCSSS-SCHHHHHHHHHHHHHHHHTTH-
T ss_pred c--cc---cCCCCc--hh--hhhhccc-CcCCceeeEecHH-HHhcccccCCCCCCC-CChHHHHhhHHHHHHHhhccH-
Confidence 1 11 122444 33 6789998 9999999999554 33322211 2222 45666666555554 2232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEe--cCCceEEEEeeccchhh-ccCchHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQVGINCL--KSNAGLFFWMDLRHLLK-EKTLEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~--~~~~g~~~~~~l~~~~~-~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
.+..++..+++.++.+.+.+.+...+-++. -..-|+++-+++..... ....+....++..+++ +||++.++..+
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~-- 424 (456)
T 4atq_A 348 NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY-- 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC--
Confidence 222333334444443333333221111111 12346777787753211 1111222245556654 59998875332
Q ss_pred CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 396 TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 396 ~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+|+..... +++++++++++|.++++.
T Consensus 425 --~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 425 --GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp --SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 35799988653 999999999999999875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=133.02 Aligned_cols=347 Identities=13% Similarity=0.185 Sum_probs=187.2
Q ss_pred CCCCcccccccc--ccccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCC-cHHHHHHHHHHHhcccCCCCc
Q 011801 34 TQNPGGVIQLGL--AENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHG-LPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 34 ~~~~~~~i~l~~--~~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~g~~~~ 108 (477)
+.+.+.+||+.. +.+.+ +.+.+.+++++. ...+..|....+ ..+....+|+.+.+..+
T Consensus 63 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q-------------~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p---- 125 (473)
T 4e3q_A 63 DVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQ-------------YERFPGYHAFFGRMSDQTVMLSEKLVEVSP---- 125 (473)
T ss_dssp ETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHH-------------HHHCCCCCCCTTEEEHHHHHHHHHHHHHSS----
T ss_pred eCCCCEEEEcccCHHHhhccCCCHHHHHHHHHH-------------HHhcccccccccccCHHHHHHHHHHHhhCC----
Confidence 445566788744 34544 346666666552 112222222211 23444455665554322
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhc-------CCC-CeEEEcCCCccchHHHHhhhCC-----------cEEEEEeccCC-
Q 011801 109 FDPDRIVMGGGATGANELIMFCLA-------NPG-DAFLVPSPYYAAFDRDLSWRTG-----------VQIVPVHCDIS- 168 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~-------~~G-d~vlv~~P~y~~~~~~~~~~~g-----------~~~~~v~~~~~- 168 (477)
.+-++|++++++++|++.+++... .++ .+|+...-+|++........+| .....++....
T Consensus 126 ~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~ 205 (473)
T 4e3q_A 126 FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYW 205 (473)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHH
T ss_pred CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCccc
Confidence 345689999999999999997632 233 5688888888774322211111 11222322110
Q ss_pred --CCcccC--------HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 169 --NNFKIT--------REALEAAYERAQEASINIKGLIITNPSNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 169 --~~f~i~--------~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
+...-. .+++++.+.+. ...++.+|++.--..-.|.+ .+++-+++|.++|+++|+++|.||+..++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfG 283 (473)
T 4e3q_A 206 RYGEEGETEEQFVARLARELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFG 283 (473)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCC
Confidence 000111 23344444332 12245555554334556765 456679999999999999999999999864
Q ss_pred cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHH---Hhccc-----CCCchHHHHHH
Q 011801 238 FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGR---KMSSF-----GLVSSQTQYLL 308 (477)
Q Consensus 238 ~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~---~~~~~-----~~vs~~~q~~~ 308 (477)
-.+..+.. +. .+..+| ++ +++|.+| .| +.+|.+++.++....... ....+ ...++++..++
T Consensus 284 RtG~~fa~--e~---~gv~PD--i~--t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaa 353 (473)
T 4e3q_A 284 RTGNTWGC--VT---YDFTPD--AI--ISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIA 353 (473)
T ss_dssp TTSSSCHH--HH---TTCCCS--EE--EECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHH
T ss_pred cccchhHH--Hh---cCCCCC--hH--Hhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhh
Confidence 44443321 11 122344 22 6789998 66 999999996554332221 11111 12455555555
Q ss_pred HHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEecCCceEEEEeeccchhhcc-Cch----HHHHHH
Q 011801 309 ASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQV----GINCLKSNAGLFFWMDLRHLLKEK-TLE----GEIALW 376 (477)
Q Consensus 309 ~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~----gi~~~~~~~g~~~~~~l~~~~~~~-~~~----~e~~l~ 376 (477)
.+.|+ +.++ .++.++.-++|.++|+++ .+.-.. .-|+++-+++....... .++ ....+.
T Consensus 354 la~L~~i~~~~l--------~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~ 424 (473)
T 4e3q_A 354 LKAIDVVMNEGL--------AENVRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKASKTPFDGNLSVSERIA 424 (473)
T ss_dssp HHHHHHHHHSSH--------HHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred hhhhhhhccccH--------HHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCccccccccccHHHHHHHH
Confidence 55553 2222 122223333344444332 232122 24567777764321111 111 112345
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
..++ ++||+++|.. +.+|++... ++++++++++++|.+++++
T Consensus 425 ~~~~-~~Gll~~~~g-------~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 425 NTCT-DLGLICRPLG-------QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5555 5699998742 468988765 4999999999999999876
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=147.77 Aligned_cols=231 Identities=13% Similarity=0.119 Sum_probs=132.1
Q ss_pred HHHHHHHHHHH--HhCCCeeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhh
Q 011801 176 EALEAAYERAQ--EASINIKGLIITNP-SNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQ 251 (477)
Q Consensus 176 ~~l~~~~~~~~--~~~~~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~ 251 (477)
++|++.+++.. ....++.+|++..- .+..|.. .+.+.+++|.++|++||+++|+||++.++...+..|. .+..
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa--~e~~- 653 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETT--TELL- 653 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSST--HHHH-
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchh--hHhc-
Confidence 45555554311 11235666555432 5777865 4788899999999999999999999998655665542 1221
Q ss_pred hccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhcC---ChhhHH
Q 011801 252 EMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASMLS---DDEFVD 319 (477)
Q Consensus 252 ~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L~---~~~~~~ 319 (477)
+..+| + .+|||.+| .| +++|+++++++ +.+.+... ......++++++++.+.|+ +.++.
T Consensus 654 --gv~PD--i--itlsK~L~-gG~~Plgav~~~~~-i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~- 724 (831)
T 4a0g_A 654 --GCKPD--I--ACFAKLLT-GGMVPLAVTLATDA-VFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN- 724 (831)
T ss_dssp --SSCCS--E--EEECGGGG-TTSSCCEEEEECHH-HHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTC-
T ss_pred --CCCCc--E--EEEecccc-cCccCcEEEEECHH-HHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHH-
Confidence 22344 2 27999998 68 79999999554 44433211 1112245666666655553 22221
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhCC-CeEecCCceEEEEeeccchhhccC--chHHHHHHHHHHHhcCeEEeCCCCCCC
Q 011801 320 NFLVETSKRLAKR-HHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKT--LEGEIALWRTIVNDVKLNVSPGSSFQC 395 (477)
Q Consensus 320 ~~~~~~~~~l~~r-~~~l~~~L~~~g-i~~~~~~~g~~~~~~l~~~~~~~~--~~~e~~l~~~ll~~~gI~v~pg~~f~~ 395 (477)
+.+.+..+++++. .+.+.+.+.+.. +.... ..|+++.+++........ .....++++.++ +.||.++|+
T Consensus 725 ~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~----- 797 (831)
T 4a0g_A 725 HNITSQGKTLRELWDEELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL----- 797 (831)
T ss_dssp TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-----
Confidence 1111111111110 112344455543 33233 345788888753211111 112234566665 569999875
Q ss_pred CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 396 TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 396 ~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+.+|++... .+++++++++++|.+++++.
T Consensus 798 --g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 --GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp --TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2579998644 49999999999999998764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-11 Score=122.53 Aligned_cols=318 Identities=14% Similarity=0.091 Sum_probs=178.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCC----CCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANP----GDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~----Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
...+.+.+..++.+..|.+ +....++++|+|++...++...+++ ++.|+++.-++..+..++... |++.+.+
T Consensus 96 ~~~~e~~~~~~~~~~lGlp---~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~-Gl~p~~v 171 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCC---CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc-CCeeEEE
Confidence 4456677777776665621 2334688889884444444443333 899999999999999998887 9988777
Q ss_pred eccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCC-CCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 164 HCDI-SNNFKITREALEAAYERAQEASINIKGLIITNPS-NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 164 ~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
+... +..+.+|+++|++++++... +.+++++++|+ +.+|.+-+ +++|+++|++||+++++|++|... +.
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~-~~-- 242 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQ-SS-- 242 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTT-CH--
T ss_pred EeeecCccCCcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchh-hh--
Confidence 6421 24688999999999987521 24466666674 45677777 999999999999999999999753 11
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
+ ...+..+.-.......++.|.+|.+. .....+++...++...............++++..+...++..+ .+-
T Consensus 243 -~--~~~l~~~a~~~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G---~~g 315 (450)
T 3bc8_A 243 -K--CMHLIQQGARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---CSG 315 (450)
T ss_dssp -H--HHHHHHHHHHHSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---HHH
T ss_pred -h--hHhHHHHHhcccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH---HHH
Confidence 1 11111100000123357789999986 5556778877665554444333211122344444444444322 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----CCCeEecCCc-eEEEEeeccchhhccCchHHHHHHHHHHHhcC---eEEeC----
Q 011801 322 LVETSKRLAKRHHNFTKGLEQ----VGINCLKSNA-GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVK---LNVSP---- 389 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~----~gi~~~~~~~-g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~g---I~v~p---- 389 (477)
+.+..++..+..+++.+.+++ .|+.+..... +.-..+.++........ +...+.-.+. ..| ..+.+
T Consensus 316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-D~tkl~i~~~-~~g~sG~~v~~~~~~ 393 (450)
T 3bc8_A 316 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK-AVTQLGSMLF-TRQVSGARAVPLGNV 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSC-HHHHHHHHHH-HTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccC-CCceeEEEec-CCCCccceeeecccc
Confidence 233333333344445554433 3665553221 10111233332111111 1223333332 223 33321
Q ss_pred ----CC---CCC----CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 390 ----GS---SFQ----CTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 390 ----g~---~f~----~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
|. .|+ .....++=+.++- .+++++++++++|+++.++.
T Consensus 394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 01 111 1123455444432 48999999999999987654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.48 E-value=1.9 Score=40.38 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=68.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
.-+++|.|+++-=..+...|++.|-.|++..-.-......++.. |.+...+.+|-. |.+++++.+++..++-.+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-GGGAVGIQADSA-----NLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTCEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCCeEEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 34666666665555666788899999888765544444555555 777788887743 678888888877666567
Q ss_pred eeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.. +++|. .++.+. -++.++++++.+.
T Consensus 104 iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 104 IDV-LFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp EEE-EEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred CCE-EEECCCCCCCCChhhccHHHHHHHHHH
Confidence 885 44554 344443 3577888888775
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=87.58 E-value=3.5 Score=37.57 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=63.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|.+.|-.|++..-.-.......... +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 79 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-GKKARAIAADIS-----DPGSVKALFAEIQALTG 79 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-CTTEEECCCCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHHHHHCC
Confidence 345777776665555666778888988888765544444444444 666777776642 57888888877665555
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+++.+--..+.+. -.+.++++++.+.
T Consensus 80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 80 GIDILVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6776544332333332 3567777777663
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.39 E-value=6.1 Score=36.45 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=68.4
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++-..+++|.|+.+-=..+...|++.|-.|++.+-.-....+ .+... |.++..+.+|-. |.+++++++++.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~ 80 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK-GYDAHGVAFDVT-----DELAIEAAFSKL 80 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTT-----CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCC-----CHHHHHHHHHHH
Confidence 333456666666655556667788999999887654332222 23334 778888887743 578899999888
Q ss_pred HHhCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++-.++.. +++|. .++.+. -++.++++++.+.
T Consensus 81 ~~~~G~iDi-LVNNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 81 DAEGIHVDI-LINNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp HHTTCCCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHCCCCcE-EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 777778885 55554 333333 3578888888774
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.35 E-value=5.7 Score=36.89 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-GSKAFGVRVDVS-----SAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEecCC-----CHHHHHHHHHHHHHHcC
Confidence 345677776665555666778888988887765443333444434 666777777642 57888888877665555
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+++.+--..+.+. ..+.++++++.+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 6775444322233332 3567777776653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=85.59 E-value=6.7 Score=35.83 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+...
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-GPAAYAVQMDVT-----RQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCCceEEEeeCC-----CHHHHHHHHHHHHHHcC
Confidence 345777777665555666778888988887765443333444434 555666676632 57888888887766666
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
++..|+.+-...+.+. -.+.+++++..+
T Consensus 82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (259)
T 4e6p_A 82 GLDILVNNAALFDLAPIVEITRESYEKLFA 111 (259)
T ss_dssp SCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 7886554332222222 346677776655
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.41 E-value=5.4 Score=36.41 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=55.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-.......... +.++..+.+|-. |.+++++++++..+.-.
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-GAAVRFRNADVT-----NEADATAALAFAKQEFG 80 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-------------CEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-CCceEEEEccCC-----CHHHHHHHHHHHHHHcC
Confidence 345677776665555666778888988887665444333333333 556666666532 57888888877665555
Q ss_pred CeeEEEEeCC-CCCccc------CCCHHHHHHHHH
Q 011801 191 NIKGLIITNP-SNPLGT------TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP-~NPtG~------~~~~~~l~~l~~ 218 (477)
++.+++ +|. ..+.+. ..+.+++++..+
T Consensus 81 ~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T 3tpc_A 81 HVHGLV-NCAGTAPGEKILGRSGPHALDSFARTVA 114 (257)
T ss_dssp CCCEEE-ECCCCCCCCCSEETTEECCHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCccccccccCCHHHHHHHHH
Confidence 677544 444 222222 245677776655
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=84.85 E-value=7 Score=35.68 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=62.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-.......+.. +.++..+.+|-. |.+.+++++++..+.-.
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-GPRVHALRSDIA-----DLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCcceEEEccCC-----CHHHHHHHHHHHHHHhC
Confidence 446777777666556666778888988887765444344434434 666777777643 57778877776655555
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
++..++ +|.. .+.+. -.+.+++++..+.
T Consensus 82 ~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 82 AIDLLH-INAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp SEEEEE-ECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 777544 4442 22222 2466777776653
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.66 E-value=5.1 Score=37.25 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=60.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+.-.+
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-GCGAAACRVDVS-----DEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-CSSCEEEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCcceEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence 34666666554445556678888988887765444344444444 656666666642 578888888776655557
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.+++.+--..+.+. -.+.++++++.+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 133 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAI 133 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 776554332233332 3567777776653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.32 E-value=6 Score=35.66 Aligned_cols=101 Identities=13% Similarity=0.247 Sum_probs=59.1
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|+|+.+.=..+...|.+.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+...++
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~i 78 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-GNAVIGIVADLA-----HHEDVDVAFAAAVEWGGLP 78 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-GGGEEEEECCTT-----SHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-cCCceEEECCCC-----CHHHHHHHHHHHHHhcCCC
Confidence 4677776665555566778888988887765444333333333 335666666642 5788888887766555577
Q ss_pred eEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.+++.+--..+.+. ..+.++++++.+.
T Consensus 79 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 107 (235)
T 3l6e_A 79 ELVLHCAGTGEFGPVGVYTAEQIRRVMES 107 (235)
T ss_dssp SEEEEECCCC------CCCHHHHHHHHHH
T ss_pred cEEEECCCCCCCCChHhCCHHHHHHHHHH
Confidence 76554433333322 3466777776663
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=83.83 E-value=6.3 Score=36.31 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=59.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|-.|++..-.-.......+.. |.++..+.+|-. |.+++++++++..+...
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-GKDVFVFSANLS-----DRKSIKQLAEVAEREME 100 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CSSEEEEECCTT-----SHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-CCceEEEEeecC-----CHHHHHHHHHHHHHHcC
Confidence 345677766655445666778888988887765443344444444 667777777643 57888888877665555
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++.+|+ +|.. .+.+. ..+.++++++.+
T Consensus 101 ~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 130 (266)
T 3grp_A 101 GIDILV-NNAGITRDGLFVRMQDQDWDDVLA 130 (266)
T ss_dssp SCCEEE-ECCCCC-----CCCHHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 777654 4442 22222 244555665554
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=6.2 Score=36.21 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=64.7
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
.+++|.|+++-=..+...|++.|-.|++.+-.-.......+ . +.++..+.+|-. |.+++++.+++..++-.++
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~-~~~~~~~~~Dv~-----~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-E-RPNLFYFHGDVA-----DPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-T-CTTEEEEECCTT-----SHHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-h-cCCEEEEEecCC-----CHHHHHHHHHHHHHHcCCC
Confidence 47777777766667778888999998887654332222222 3 556777777643 5788888888776665578
Q ss_pred eEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.. +++|. .++.+. -++.++++++.+.
T Consensus 77 Di-LVNNAG~~~~~~~~~~~~e~~~~~~~v 105 (247)
T 3ged_A 77 DV-LVNNACRGSKGILSSLLYEEFDYILSV 105 (247)
T ss_dssp CE-EEECCCCCCCCGGGTCCHHHHHHHHHH
T ss_pred CE-EEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 75 45554 333333 3577888888774
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.70 E-value=5.1 Score=37.14 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc------------cc---hHHHHhhhCCcEEEEEeccCCCCcccCH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYY------------AA---FDRDLSWRTGVQIVPVHCDISNNFKITR 175 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y------------~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~ 175 (477)
...+++|.|+.+.=..+...|++.|..|++.+-.. .. ....+... |.++..+.+|-. |.
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~-----~~ 83 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-GRKAYTAEVDVR-----DR 83 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-TSCEEEEECCTT-----CH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-CCceEEEEccCC-----CH
Confidence 34577777766555566677888898887754321 01 11122223 667777777643 57
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH
Q 011801 176 EALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS 218 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~ 218 (477)
+++++++++..+...++.+|+.+--..+.+...+.+++++..+
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~ 126 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhh
Confidence 8888888776655557775444332333344466677776655
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=83.26 E-value=9.3 Score=34.76 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
....+++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+++++++++..+..
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~~~~~~~~~~~~~ 81 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-GDAALAVAADIS-----KEADVDAAVEAALSKF 81 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----SHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-CCceEEEEecCC-----CHHHHHHHHHHHHHhc
Confidence 3445777777665445566777788988887765544444444444 666777777643 5778888887765555
Q ss_pred CCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 190 INIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 190 ~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
.++..++.+-.. .+.+ ...+.+++++..+.
T Consensus 82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
T 3n74_A 82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGV 114 (261)
T ss_dssp SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHH
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHH
Confidence 567765443221 2122 22467777766553
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=82.99 E-value=17 Score=33.73 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=63.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc----------chHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA----------AFDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~----------~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
+...+++|.|+.+.=..+...|++.|..|++..-.-. .....+... |.++..+.+|-. |.++++
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~ 81 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA-GGQALPIVGDIR-----DGDAVA 81 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH-TSEEEEEECCTT-----SHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHH
Confidence 3445777777665555666778888988877654322 112233444 778888887643 578888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 180 AAYERAQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+++++..+...++.+++.+--..+.+. -.+.++++++.+.
T Consensus 82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 123 (285)
T 3sc4_A 82 AAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 888776655557776554332233332 3567777776653
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=14 Score=33.58 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+...=..+...|.+.|..|++..-.-.......+.. +.++..+.+|-. |.+++++++++..+...
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-GNNCVFAPADVT-----SEKDVQTALALAKGKFG 85 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHHHHHCC
Confidence 345777766655445666777788888777654433344333433 555666666532 57788888776655444
Q ss_pred CeeEEEEeCCCCCccc--------CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--------TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--------~~~~~~l~~l~~ 218 (477)
++.+|+.+--....+. ..+.+++++..+
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
T 2o23_A 86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLD 121 (265)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHH
T ss_pred CCCEEEECCccCCCCccccccccCCCCHHHHHHHHH
Confidence 6776554322222221 246666665554
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=82.44 E-value=8.3 Score=34.97 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|.+.|..|++..-.-.......... +.+...+.+|-. |.+++++++++..++-.
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-GDNGKGMALNVT-----NPESIEAVLKAITDEFG 82 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cccceEEEEeCC-----CHHHHHHHHHHHHHHcC
Confidence 345677766655445566778888988887654433333333333 444555666532 57888888877665555
Q ss_pred CeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++.+++ +|.. .+.+. ..+.+++++..+
T Consensus 83 ~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~ 112 (248)
T 3op4_A 83 GVDILV-NNAGITRDNLLMRMKEEEWSDIME 112 (248)
T ss_dssp CCSEEE-ECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCChhhCCHHHHHHHHH
Confidence 777544 4442 22222 346777777665
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=82.24 E-value=13 Score=34.13 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=62.9
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc--hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA--FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~--~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
++..-+++|.|+++-=..+...|++.|-.|++..-.-.. ....+... |.+...+.+|-. +.+++++++++..
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQR-QPRATYLPVELQ-----DDAQCRDAVAQTI 78 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHH-CTTCEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhc-CCCEEEEEeecC-----CHHHHHHHHHHHH
Confidence 333445666665544456667788889877776533222 22223334 667777777643 5788888887766
Q ss_pred HhCCCeeEEEEeCCC--CCcccCCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPS--NPLGTTLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~--NPtG~~~~~~~l~~l~~~ 219 (477)
++-.++.. +++|.. .+...-.+.++++++.+.
T Consensus 79 ~~~G~iDi-LVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 79 ATFGRLDG-LVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHHSCCCE-EEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHhCCCCE-EEECCCCCCCCCccCCHHHHHHHHHH
Confidence 65557875 555552 233445677888877764
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=82.23 E-value=13 Score=33.53 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=58.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
..+++|.|+...=..+...|.+.|..|++..-.- ......++.. |.++..+.+|-. |.+++++++++..+.-.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-GRRVLTVKCDVS-----QPGDVEAFGKQVISTFG 81 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc-CCcEEEEEeecC-----CHHHHHHHHHHHHHHcC
Confidence 4577776665555566677888888877754332 2222233333 666767776642 57778887776655444
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.+|+.+-...+.+. ..+.++++++.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEI 112 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6776544322222222 3466677666653
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.16 E-value=11 Score=34.73 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=62.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++.+-.-.......... |.++..+.+|-. |.+.+++++++..+.-.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 84 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-GRGAVHHVVDLT-----NEVSVRALIDFTIDTFG 84 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-CTTCEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-CCCeEEEECCCC-----CHHHHHHHHHHHHHHcC
Confidence 345777777665555666778888988887765554454444444 555666666532 57788888876655545
Q ss_pred CeeEEEEeCCC-C-C-cc--cCCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPS-N-P-LG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~-N-P-tG--~~~~~~~l~~l~~~ 219 (477)
++..++ +|.. . + .+ .-++.+++++..+.
T Consensus 85 ~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~~v 117 (271)
T 3tzq_B 85 RLDIVD-NNAAHSDPADMLVTQMTVDVWDDTFTV 117 (271)
T ss_dssp CCCEEE-ECCCCCCTTCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEE-ECCCCCCCCCCccccCCHHHHHHHHHH
Confidence 677544 4442 2 2 21 13567777776653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=82.12 E-value=13 Score=33.90 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=62.2
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc---c---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA---A---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~---~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
++...+++|.|+.+.=..+...|++.|..|++..-.-. . ....++.. |.++..+.+|-. |.+++++++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----d~~~v~~~~ 82 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-GAKVALYQSDLS-----NEEEVAKLF 82 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT-TCEEEEEECCCC-----SHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHH
Confidence 33446777777666556667788899988887532211 1 11223333 778888887743 578888888
Q ss_pred HHHHHhCCCeeEEEEeCCC-CCccc--CCCHHHHHHHHH
Q 011801 183 ERAQEASINIKGLIITNPS-NPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~ 218 (477)
++..+...++.+++ +|.. .+.+. -.+.++++++.+
T Consensus 83 ~~~~~~~g~iD~lv-nnAg~~~~~~~~~~~~~~~~~~~~ 120 (262)
T 3ksu_A 83 DFAEKEFGKVDIAI-NTVGKVLKKPIVETSEAEFDAMDT 120 (262)
T ss_dssp HHHHHHHCSEEEEE-ECCCCCCSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHcCCCCEEE-ECCCCCCCCCcccCCHHHHHHHHH
Confidence 77665555777644 4442 22232 346677776665
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.11 E-value=9.1 Score=35.32 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.++++++.. +.-.
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~-----~~~~v~~~~~~~-~~~~ 102 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-GNRAEFVSTNVT-----SEDSVLAAIEAA-NQLG 102 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHH-TTSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-CCceEEEEcCCC-----CHHHHHHHHHHH-HHhC
Confidence 345777776665555666778888988887765443333444444 666777777642 578888888766 3334
Q ss_pred CeeEEEEeCC-CCCcc-------cCCCHHHHHHHHHH
Q 011801 191 NIKGLIITNP-SNPLG-------TTLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP-~NPtG-------~~~~~~~l~~l~~~ 219 (477)
++..++.++. ..+.+ ...+.+++++..+.
T Consensus 103 ~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T 3ppi_A 103 RLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139 (281)
T ss_dssp EEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHH
T ss_pred CCCeEEEccCcccccccccccccccCCHHHHHHHHHH
Confidence 6666665523 22222 24666667666653
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=81.80 E-value=8.7 Score=35.21 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-......+... ++.. +.+|-. |.+.+++++++..+...
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~--~~~Dv~-----~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-GAVA--LYGDFS-----CETGIMAFIDLLKTQTS 98 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-TCEE--EECCTT-----SHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-CCeE--EECCCC-----CHHHHHHHHHHHHHhcC
Confidence 445777777665555666778888887777654433333444444 6544 444422 57888888877766656
Q ss_pred CeeEEEEeCCC-C-CcccCCCHHHHHHHHH
Q 011801 191 NIKGLIITNPS-N-PLGTTLDRDTLKSLVS 218 (477)
Q Consensus 191 ~~k~vii~nP~-N-PtG~~~~~~~l~~l~~ 218 (477)
++.+|+ +|.. . +.....+.++++++.+
T Consensus 99 ~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~ 127 (260)
T 3gem_A 99 SLRAVV-HNASEWLAETPGEEADNFTRMFS 127 (260)
T ss_dssp CCSEEE-ECCCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEE-ECCCccCCCCCCCCHHHHHHHHH
Confidence 777654 4442 2 2123344555555554
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=81.49 E-value=23 Score=32.05 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
...+++|+|+.+.=..+...|.+.|..|++..-.-..... .++.. |.++..+.+|-. |.+++++++++..+
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA-GGRIVARSLDAR-----NEDEVTAFLNAADA 80 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEECcCC-----CHHHHHHHHHHHHh
Confidence 3457777776655556667788889888877654333322 23333 678888887743 57888888887766
Q ss_pred hCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
. .++..++.+--..+.+. -.+.+++++..+.
T Consensus 81 ~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (252)
T 3h7a_A 81 H-APLEVTIFNVGANVNFPILETTDRVFRKVWEM 113 (252)
T ss_dssp H-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred h-CCceEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 6 67876544332233232 3566677766653
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=81.31 E-value=17 Score=33.98 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=61.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH---hhhCC-cEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL---SWRTG-VQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~---~~~~g-~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+.+.=..+...|++.|-.|++..-.-....... ... + .++..+.+|-. |.+.+++++++..
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~-----d~~~v~~~~~~~~ 114 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL-GAGNVIGVRLDVS-----DPGSCADAARTVV 114 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS-SSSCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-CCCcEEEEEEeCC-----CHHHHHHHHHHHH
Confidence 345666666555445566778888988887765544333322 222 3 46677777642 5788888887766
Q ss_pred HhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.-.++.+|+.+--..+.+. -++.++++++.+.
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55557776543322233332 3577777777664
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=81.25 E-value=9.4 Score=35.19 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=59.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|++.|..|++..-.-.......... +.++..+.+|-. |.+.+++++++..+...+
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~~g~ 79 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-PDRAEAISLDVT-----DGERIDVVAADVLARYGR 79 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-TTTEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-cCCceEEEeeCC-----CHHHHHHHHHHHHHhCCC
Confidence 34666666554444556677888988887765544444444433 555666666532 577888877766555556
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.+|+.+-...+.+. ..+.++++++.+
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (281)
T 3m1a_A 80 VDVLVNNAGRTQVGAFEETTERELRDLFE 108 (281)
T ss_dssp CSEEEECCCCEEECCTTTCCHHHHHHHHH
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 776554322222222 356666766655
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=80.66 E-value=15 Score=33.80 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=66.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
.-+++|.|+++-=..+...|+..|-.|++.+-.-.... ..++.. |.++..+.+|-. |.+++++.+++..++
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dvt-----~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM-GKEVLGVKADVS-----KKKDVEEFVRRTFET 81 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 44666666665555666778889988888664433222 223334 888888888743 578888888877666
Q ss_pred CCCeeEEEEeCCC--CCccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS--NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~--NPtG~--~~~~~~l~~l~~~ 219 (477)
-.++.. +++|.. .+.+. -++.++++++.+.
T Consensus 82 ~G~iDi-LVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 82 YSRIDV-LCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp HSCCCE-EEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred cCCCCE-EEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 567875 556652 33342 4688889888875
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=80.65 E-value=17 Score=33.45 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----------hHHHHhhhCCcEEEEEeccCCCCcccCHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----------FDRDLSWRTGVQIVPVHCDISNNFKITREALE 179 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----------~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~ 179 (477)
+...+++|.|+.+.=..+...|.+.|..|++..-.-.. ....+... |.++..+.+|-. |.+.++
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~ 78 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA-GGQGLALKCDIR-----EEDQVR 78 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH-TSEEEEEECCTT-----CHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc-CCeEEEEeCCCC-----CHHHHH
Confidence 34457777776655556667788889888776533221 12223334 778888887743 578888
Q ss_pred HHHHHHHHhCCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHH
Q 011801 180 AAYERAQEASINIKGLIITNPS-NPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 180 ~~~~~~~~~~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~ 218 (477)
+++++..+...++..++ +|.. ...+ ...+.++++++.+
T Consensus 79 ~~~~~~~~~~g~iD~lv-nnAG~~~~~~~~~~~~~~~~~~~~ 119 (274)
T 3e03_A 79 AAVAATVDTFGGIDILV-NNASAIWLRGTLDTPMKRFDLMQQ 119 (274)
T ss_dssp HHHHHHHHHHSCCCEEE-ECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEE-ECCCcccCCCcccCCHHHHHHHHh
Confidence 88877665555777544 4442 2222 2356677776665
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=80.55 E-value=14 Score=34.49 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC------------ccch---HHHHhhhCCcEEEEEeccCCCCcccCH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPY------------YAAF---DRDLSWRTGVQIVPVHCDISNNFKITR 175 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~------------y~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~ 175 (477)
...+++|.|+.+.=..+...|++.|..|++.+-. -... ...++.. |.++..+.+|-. |.
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~ 101 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-GRRIIASQVDVR-----DF 101 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-CCceEEEECCCC-----CH
Confidence 3457777766655556667788889888775422 1111 1222333 677888887643 57
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCCC-CCccc---CCCHHHHHHHHHH
Q 011801 176 EALEAAYERAQEASINIKGLIITNPS-NPLGT---TLDRDTLKSLVSF 219 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP~-NPtG~---~~~~~~l~~l~~~ 219 (477)
+++++++++..+.-.++.+++ +|.. .+.+. -++.+++++..+.
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv-~nAg~~~~~~~~~~~~~~~~~~~~~v 148 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVL-ANAALASEGTRLNRMDPKTWRDMIDV 148 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEE-ECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEE-ECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 888888877665545677544 4442 22222 3577777777663
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=15 Score=33.92 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=61.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh---hhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS---WRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~---~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+.+.=..+...|.+.|..|++..-.-........ ...|.++..+.+|-. |.+++++++++..+.
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR-----APPAVMAAVDQALKE 102 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCC-----CHHHHHHHHHHHHHH
Confidence 457777776655556667788899888876554333222221 112667777777643 578888888776655
Q ss_pred CCCeeEEEEeCCC-CCccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-NPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~-NPtG~--~~~~~~l~~l~~~ 219 (477)
..++.+|+ +|.. .+.+. .++.++++++.+.
T Consensus 103 ~g~id~lv-~nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 103 FGRIDILI-NCAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp HSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCEEE-ECCcCCCCCCcccCCHHHHHHHHHH
Confidence 55777544 4442 22222 3567777776663
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.19 E-value=23 Score=33.98 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----------hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----------FDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----------~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~ 180 (477)
...+++|.|+.+.=..+...|++.|..|++..-.-.. ....++.. |.++..+.+|-. |.+.+++
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~-g~~~~~~~~Dv~-----d~~~v~~ 118 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV-GGKALPCIVDVR-----DEQQISA 118 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc-CCeEEEEEccCC-----CHHHHHH
Confidence 3456666666554455667788889887776433221 22333444 778888887643 5788888
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcc--cCCCHHHHHHHHH
Q 011801 181 AYERAQEASINIKGLIITNPSNPLG--TTLDRDTLKSLVS 218 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG--~~~~~~~l~~l~~ 218 (477)
++++..+.-.++.+|+.+--....+ ...+.++++++.+
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~ 158 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMN 158 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 8887766545777544432222222 2356667766655
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.04 E-value=14 Score=33.41 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=57.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+...=..+...|.+.|..|++..-.-.......... +.++..+.+|-. |.++++++++...+...+
T Consensus 7 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~-----~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-GERSMFVRHDVS-----SEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-CTTEEEECCCTT-----CHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCceEEEEccCC-----CHHHHHHHHHHHHHHcCC
Confidence 35666666554445566677788988877654433233333333 555666666532 577888887766554456
Q ss_pred eeEEEEeCCCCCccc--CCCHHHHHHHHH
Q 011801 192 IKGLIITNPSNPLGT--TLDRDTLKSLVS 218 (477)
Q Consensus 192 ~k~vii~nP~NPtG~--~~~~~~l~~l~~ 218 (477)
+.+|+.+-...+.+. ..+.+++++..+
T Consensus 81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDMETGRLEDFSRLLK 109 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 776544322222232 246666666655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 477 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-116 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-115 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 6e-57 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-55 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 7e-51 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 1e-37 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 1e-29 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-29 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 6e-28 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 2e-27 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-27 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 3e-25 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-25 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 5e-24 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 8e-24 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 9e-24 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-23 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 3e-23 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-19 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 3e-16 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 4e-16 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 7e-16 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 1e-15 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 6e-13 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 6e-06 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 8e-06 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 1e-05 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 1e-05 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 0.003 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 347 bits (890), Expect = e-116
Identities = 237/429 (55%), Positives = 320/429 (74%), Gaps = 5/429 (1%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
+LS+ AT N HG+DS+YF GW+ +++NP+H N G+IQ+GLAENQLCFDL++ W+ KN
Sbjct: 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 60
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P A+ G +F ++A+FQDYHGLP F++A+ FM + RG +VTFDP+ +V+ GAT
Sbjct: 61 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 120
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE +FCLA+PG+A L+P+PYY FDRDL WRTGV+IVP+HC SN F+IT ALE AY
Sbjct: 121 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 180
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
+ A++ ++ +KG+++TNPSNPLGTT+ R+ L L+SF+ DK IHL+ DEIY+ T FSSP
Sbjct: 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 240
Query: 243 FTSVAEVIQEMDC-----NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF 297
F SV EV+++ +C +H++YSLSKD+GLPGFRVG +YS +D VV KMSSF
Sbjct: 241 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF 300
Query: 298 GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFW 357
GLVSSQTQ+LL++MLSD + N++ E KRL +R GL++ GI+CL NAGLF W
Sbjct: 301 GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCW 360
Query: 358 MDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVAL 417
+D+RHLL+ T E E+ LW+ IV +V LN+SPGSS CTEPGWFRVCFAN+ + TL +A+
Sbjct: 361 VDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAM 420
Query: 418 NRIAAFVQQ 426
R+ AFV +
Sbjct: 421 QRLKAFVGE 429
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 343 bits (881), Expect = e-115
Identities = 309/429 (72%), Positives = 369/429 (86%), Gaps = 4/429 (0%)
Query: 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKN 62
ILSK+ATN HGE+S YFDGWKA+D +PFHP +NP GVIQ+GLAENQLC DLI+DWI +N
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 63 PYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG 122
P SIC+ EG++ FK IA FQDYHGLPEFR+A+AKFM K RGGRV FDP+R+VM GGATG
Sbjct: 61 PKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 123 ANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182
ANE I+FCLA+PGDAFLVPSPYY AF+RDL WRTGVQ++P+HC+ SNNFKIT +A++ AY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242
E AQ+++I +KGLI+TNPSNPLGTTLD+DTLKS++SF N NIHLVCDEIYAATVF +P+
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 243 FTSVAEVIQEMD---CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL 299
F S+AE++ E + CN+DL+HI+YSLSKDMGLPGFRVGI+YSFND VVNC RKMSSFGL
Sbjct: 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGL 299
Query: 300 VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMD 359
VS+QTQY LA+MLSD++FVDNFL E++ RL KRH +FT GLE VGI CLK+NAGLF WMD
Sbjct: 300 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMD 359
Query: 360 LRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
LR LL+E T + E++LWR I+NDVKLNVSPGSSF+C EPGWFRVCFANMDD T+ +AL R
Sbjct: 360 LRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALAR 419
Query: 420 IAAFVQQDK 428
I FV +K
Sbjct: 420 IRRFVGVEK 428
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 191 bits (486), Expect = 6e-57
Identities = 62/345 (17%), Positives = 135/345 (39%), Gaps = 25/345 (7%)
Query: 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP 141
+ G P R+A+A+ + + + + D I++ G + +M + PGD ++P
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDN--GLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIP 120
Query: 142 SPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS 201
+P++ ++ + G V + + FK++ E + A K L+ PS
Sbjct: 121 APFWVSYPEMVKLAEGT-PVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPS 173
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G D ++++ + + ++ DEIY ++ + S+ +
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAAS---PEAYERSV 230
Query: 262 IIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDN 320
+ +K + G+RVG + V + S V + QY + + +
Sbjct: 231 VCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QD 287
Query: 321 FLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379
+ E A+R L + G+ C K + + + + KT + +
Sbjct: 288 CVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA-----KTGRSSLDFCSEL 342
Query: 380 VNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
++ ++ PG++F R+ +A D DT++ + R+ F+
Sbjct: 343 LDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFL 384
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 188 bits (477), Expect = 1e-55
Identities = 67/342 (19%), Positives = 142/342 (41%), Gaps = 18/342 (5%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
GL E R+A+A+ + K G + I++ GA A + + G+ L+P+P +
Sbjct: 63 GLLELREAIAEKLKKQNGIEADPKTE-IMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFV 121
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
++ + G + V V + F++ + L+ + LII +P NP G
Sbjct: 122 SYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGA 174
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
L + L+ + F+ + ++ ++ DE+Y ++ + S+A +D + +
Sbjct: 175 VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIA----SLDGMFERTITVNGF 230
Query: 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326
SK + G+R+G V + + + + A+ DE + E
Sbjct: 231 SKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMR 290
Query: 327 KRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386
K +R K L ++G+ +K + + +R T ++ + ++
Sbjct: 291 KEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRD-----TGLTSKKFSELMLKEARVA 345
Query: 387 VSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428
V PGS+F G+ R+ +A + L+ A++R+ +++ K
Sbjct: 346 VVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKERK 386
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 175 bits (444), Expect = 7e-51
Identities = 67/342 (19%), Positives = 137/342 (40%), Gaps = 26/342 (7%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G+PE R+A+A+ + ++ P+ ++ G + A + + +PGD +V SP
Sbjct: 66 PPAGIPELREALAEKFRREN--GLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
Y+ ++ + + GV +V V F E + A K L++ +P+NP
Sbjct: 124 YWVSYPEMVRFAGGV-VVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G ++ L++L + + +LV DEIY ++ F+ + +
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR-------VAPEHTLTV 229
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGR-KMSSFGLVSSQTQYLLASMLSDDEFVDNFL 322
+K + G+R+G + + S + Q+ L++ E F+
Sbjct: 230 NGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFV 289
Query: 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382
+ +R +GL +G+ ++ + + MD + ++ E L +
Sbjct: 290 EMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLL------E 343
Query: 383 VKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
+ V PG+ F G R+ +A ++ L+ AL R A +
Sbjct: 344 AGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 139 bits (351), Expect = 1e-37
Identities = 72/352 (20%), Positives = 142/352 (40%), Gaps = 30/352 (8%)
Query: 82 FQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP 141
+ D GLPE R+A+ + R V PD + + T A +LI L +PGD LVP
Sbjct: 66 YGDSEGLPELRKAIVEREK--RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVP 123
Query: 142 SPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPS 201
P Y L G + V +++ + + ++ + K + + NP+
Sbjct: 124 GPSYP-PYTGLVKFYGGKPVEYRTIEEEDWQPDID------DIRKKITDRTKAIAVINPN 176
Query: 202 NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIH 261
NP G D+ TL+ +++ + I ++ DEIY + + + +
Sbjct: 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGS------LTKDVPVI 230
Query: 262 IIYSLSKDMGLPGFRVGIVYSFN-----DTVVNCGRKMSSFGL-VSSQTQYLLASMLSDD 315
++ LSK G+R+G +Y + V +++ L ++ Q+ + L+
Sbjct: 231 VMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP 290
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGLFFWMDLRHLLKEKTLEGEIA 374
++L E K+L +R K L ++ I+ K + + + + +
Sbjct: 291 ---MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE----VGPWKNDKE 343
Query: 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
++++ + GS F G FR F + L+ A++R F+++
Sbjct: 344 FVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMKE 394
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 118 bits (296), Expect = 1e-29
Identities = 50/362 (13%), Positives = 101/362 (27%), Gaps = 66/362 (18%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--------NPGDAFLV 140
E + + + G IV G G T ++ L+ P +
Sbjct: 103 FELEKTIKELHE--VVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVA 160
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
+P+Y F + + ++ ++T+P
Sbjct: 161 HAPFYPVF---------REQTKYFDKKGYVWAGNAANYVNV------SNPEQYIEMVTSP 205
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
+NP G + C IY + P +T + + D++
Sbjct: 206 NNPEGLLR--------------HAVIKGCKSIYDMVYYW-PHYTPIKY-----KADEDIL 245
Query: 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG--LVSSQTQYLLASMLSDD--- 315
++++SK G G R G +++V N + +TQ +L +
Sbjct: 246 --LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAM 303
Query: 316 -----EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRH-------L 363
+ + K+L +R N T L+Q + + R
Sbjct: 304 VKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSY 363
Query: 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
K E + ++N G F+ + R+ D + +
Sbjct: 364 AWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDM 421
Query: 424 VQ 425
V+
Sbjct: 422 VK 423
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (290), Expect = 2e-29
Identities = 68/341 (19%), Positives = 136/341 (39%), Gaps = 30/341 (8%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
D G+ E R+ + G + PD++V+ GA A L +PGD +V SP
Sbjct: 63 DPRGIYELREGI--AKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 120
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
+ ++ + G V N E + K ++I +P+NP
Sbjct: 121 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK-------TKAVLINSPNNP 173
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G R+ L+ LV +N +++ DE+Y + V++ + + ++ D I I
Sbjct: 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSIL-----DVSEGFDRIVYI 228
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
SK + G+RVG + S + S + + + ++
Sbjct: 229 NGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVA-----QYAALKALEVDNS 283
Query: 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383
+ +R + + L+++G+ ++ + + +R ++ ++ +
Sbjct: 284 YMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERLLEEK 335
Query: 384 KLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
K+ + PGS+F +PG+ R+ FA + L AL+RI F+
Sbjct: 336 KVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRIEDFL 373
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 113 bits (282), Expect = 6e-28
Identities = 60/366 (16%), Positives = 104/366 (28%), Gaps = 58/366 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-------ANPGDAFL 139
GL EFR ++ + V G TGA + L N
Sbjct: 75 GLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVY 134
Query: 140 VPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITN 199
V SP + + + I + + + + E A E S ++
Sbjct: 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFS---IFVLHAC 191
Query: 200 PSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDL 259
NP GT + K + S + + + D Y + + + A I+
Sbjct: 192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA--IRYFVSEGFE 249
Query: 260 IHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--------QYLLASM 311
+ S SK+ GL RVG + + R +S + T ++A
Sbjct: 250 LFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVART 309
Query: 312 LSDDEFV---DNFLVETSKRLAKRHHNFTKGLEQVGI----NCLKSNAGLFFWMDL---- 360
LSD E + + R+ LE + N + G+F + L
Sbjct: 310 LSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQ 369
Query: 361 -RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
+L+ +K + + P R+ + L
Sbjct: 370 VEYLINQK----------------HIYLLPSG----------RINMCGLTTKNLDYVATS 403
Query: 420 IAAFVQ 425
I V
Sbjct: 404 IHEAVT 409
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (278), Expect = 2e-27
Identities = 56/363 (15%), Positives = 121/363 (33%), Gaps = 26/363 (7%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G P + +A F G+ G + +++ G GA L + GD ++ P
Sbjct: 62 KTFGYPPLTKILASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 120
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI---KGLIITNP 200
++ ++ G + + + + A K L++ P
Sbjct: 121 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 180
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
+NPLG R+ L+ + S ++ + DE+Y V+ + S+A + +
Sbjct: 181 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERT---- 236
Query: 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSD-----D 315
I S K G++VG V + + + + + +
Sbjct: 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 296
Query: 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTL------ 369
++ V+ + + + + + L+ VG+ L F D+ ++
Sbjct: 297 RQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVD 356
Query: 370 -EGEIALWRTIVNDVKLNVSPGSSFQCTE-----PGWFRVCFANMDDDTLQVALNRIAAF 423
+ + ++ + L P S F + R CF D+ TLQ ++ +
Sbjct: 357 EPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKW 415
Query: 424 VQQ 426
+
Sbjct: 416 KVE 418
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 111 bits (277), Expect = 2e-27
Identities = 61/351 (17%), Positives = 126/351 (35%), Gaps = 23/351 (6%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G R A+A++M K + I+ G+ A +LI NPGD +V +P
Sbjct: 69 TTKGFTPLRLALARWMEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAP 126
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
Y A + + + + + D E + + + +
Sbjct: 127 TYLAAIQAFKYYD-PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA- 184
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G T+ D K L+ N+ + +V D Y+ +S + I
Sbjct: 185 -GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPP------IKHFDDYGRVIY 237
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
+ PGFR+G V + + S L ++ +A ++ ++D +
Sbjct: 238 LGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIP 297
Query: 324 ETSKRLAKRHHNFTKGLEQV---GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIV 380
+ + R + LE+ G+ K G+F + L + K + E A+ + +
Sbjct: 298 KIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMM-ERAVAKGVA 356
Query: 381 NDVKLNVSPGSSF--QCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDKE 429
PG +F + R+ F + ++T++ + R+A ++++ +
Sbjct: 357 ------YVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMK 401
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 105 bits (261), Expect = 3e-25
Identities = 59/360 (16%), Positives = 105/360 (29%), Gaps = 55/360 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPY 144
G+PEF + + + + R G TGA + LA V +P
Sbjct: 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPS 129
Query: 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
+ + G+++ + N + +AL + EA L NP
Sbjct: 130 WPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLN---EAQAGDVVLFHGCCHNPT 185
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G + ++L +K + D Y + M + +
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM---HKELIVAS 242
Query: 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL--------VSSQTQYLLASMLSDDE 316
S SK+ GL RVG R S + ++A++LS+D
Sbjct: 243 SYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDA 302
Query: 317 F---VDNFLVETSKRLAKRHHNFTKGLEQVGI----NCLKSNAGLFFWMDL-----RHLL 364
+ L + +R+ + F L++ G + + G+F + L L
Sbjct: 303 LRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLR 362
Query: 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424
+E + RV A M D + I A +
Sbjct: 363 EEF----------------GVYAVASG----------RVNVAGMTPDNMAPLCEAIVAVL 396
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 4e-25
Identities = 54/358 (15%), Positives = 103/358 (28%), Gaps = 55/358 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPY 144
GL +R A+A + + + G +GA ++ L P V P
Sbjct: 71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPT 130
Query: 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
+ + G ++ + L A + L+ NP
Sbjct: 131 WENHVAIFAG-AGFEVSTYPWYDEATNGVRFNDLLATLKTLPA---RSIVLLHPCCHNPT 186
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G L D +++ + + + D Y + I +
Sbjct: 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA---GLPALVSN 243
Query: 265 SLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--------SFGLVSSQTQYLLASMLSDDE 316
S SK L G RVG + + GR + ++ + ++A++L+D+
Sbjct: 244 SFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEA 303
Query: 317 FVDNFLVET---SKRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDL-----RHLL 364
++L E R+ K L + L + G+F + L L
Sbjct: 304 LKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLR 363
Query: 365 KEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAA 422
+E + + R+C A ++ +Q AA
Sbjct: 364 EEF----------------GVYLIASG----------RMCVAGLNTANVQRVAKAFAA 395
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 100 bits (250), Expect = 5e-24
Identities = 60/343 (17%), Positives = 117/343 (34%), Gaps = 35/343 (10%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
GLP R+A+A+ +P+ +V+ GAT A +++ L PGD +V P
Sbjct: 59 PPAGLPALREALAEEF--------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
++ + D + F++ ALE A + L++ P NP
Sbjct: 111 FFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNP 164
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G L+++ ++ L+ DE+Y + + + + +
Sbjct: 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPR-------RLREFAPERTFTV 217
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
S K + G+RVG + + + + + + F
Sbjct: 218 GSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYE 277
Query: 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383
+ +R GL +G+ F +L + +E +
Sbjct: 278 ALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFRLVE-----------EA 326
Query: 384 KLNVSPGSSFQCTEP--GWFRVCFANMDDDTLQVALNRIAAFV 424
++ + P S+F +P FR F ++ L +AL R+ V
Sbjct: 327 RVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 100 bits (250), Expect = 8e-24
Identities = 48/362 (13%), Positives = 94/362 (25%), Gaps = 55/362 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC---LANPGDAFLVPSP 143
GL +F +A A+ V G TG+ + +P P
Sbjct: 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
+ + G+Q+ + + E L+ NP
Sbjct: 132 SWGNH-TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE---KSIILLHACAHNP 187
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G ++ K L S + +N+ D Y + A ++ + +
Sbjct: 188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA--LRHFIEQGIDVVLS 245
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASMLSDD 315
S +K+MGL G R G R + + + +L+
Sbjct: 246 QSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTP 305
Query: 316 EF---VDNFLVETSKRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDL-----RHL 363
E + + R+ L++ G + G+F + L L
Sbjct: 306 ELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERL 365
Query: 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423
KE + ++ R+ A + + + I
Sbjct: 366 TKEF----------------SIYMTKDG----------RISVAGVASSNVGYLAHAIHQV 399
Query: 424 VQ 425
+
Sbjct: 400 TK 401
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 101 bits (250), Expect = 9e-24
Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 23/358 (6%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G P QA++K + + +++ GA A + + GD ++ P
Sbjct: 64 RGFGHPRLVQALSKLYSQLVDRTINPM-TEVLVTVGAYEALYATIQGHVDEGDEVIIIEP 122
Query: 144 YYAAFDRDLSWRTGVQI-VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSN 202
++ ++ + G+ +P+ + + + + + E + K +II P N
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 203 PLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHI 262
PLG +DR L+ + + N+ V DE+Y VF + + + +
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER----TIT 238
Query: 263 IYSLSKDMGLPGFRVGIVYSFNDTVVNCGR-----KMSSFGLVSSQTQYLLASMLSDDEF 317
I S K L G+++G Y + N + + + L +
Sbjct: 239 IGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS 298
Query: 318 VDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHL------LKEKTLEG 371
+ + S L + L +VG+N G F D L +E
Sbjct: 299 PECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARK 358
Query: 372 EIALWRTIVNDVKLNVSPGSSFQCTEP-----GWFRVCFANMDDDTLQVALNRIAAFV 424
+ + + V L P S+F + R CF D+ LQ A + +
Sbjct: 359 DYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWK 415
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 100 bits (248), Expect = 1e-23
Identities = 73/413 (17%), Positives = 156/413 (37%), Gaps = 39/413 (9%)
Query: 29 NPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYH-- 86
+ P+ +P +I+L + + L +L+ +A ++ K+ Q+ +
Sbjct: 21 DNAKPSPSPKPIIKLSVGDPTLDKNLL------------TSAAQIKKLKEAIDSQECNGY 68
Query: 87 ----GLPEFRQAVAKFMGKGRG----GRVTFDPDRIVMGGGATGANELIMFCLANPGDAF 138
G PE R+AVA + + T D +V+ G + + + + + GD
Sbjct: 69 FPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYA 128
Query: 139 LVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIIT 198
LVP P + + G+ + +C N+++ + + + K LI+T
Sbjct: 129 LVPQPGFP-HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD------KTKLLIVT 181
Query: 199 NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD 258
NPSNP G+ R ++ +V + + L DEIYA VF +
Sbjct: 182 NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNA-TFTSVADFETTV 240
Query: 259 LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR-----KMSSFGLVSSQTQYLLASMLS 313
I+ +K++ +PG+R+G + + ++
Sbjct: 241 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEAL 300
Query: 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEI 373
+ ++ +K + + E +G+ ++ + L K + ++ ++
Sbjct: 301 LNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID-LEKYRDIKTDV 359
Query: 374 ALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ ++ + + V PG+ F PG+ R+ + + A+ RI AF Q+
Sbjct: 360 EFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIKAFCQR 409
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 99.3 bits (246), Expect = 3e-23
Identities = 53/366 (14%), Positives = 102/366 (27%), Gaps = 57/366 (15%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANEL--IMFCLANPGDAFLVPSPY 144
GLP AK + + + D V TGA + F P + P
Sbjct: 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPT 133
Query: 145 YAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPL 204
+A + G++ + + A ++A E ++ + NP
Sbjct: 134 WANH-MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPT 189
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIY 264
G + +V I KN + D Y + A + + +
Sbjct: 190 GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249
Query: 265 S-LSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------SSFGLVSSQTQYLLASM 311
+K+ G+ G RVG + S + ++A +
Sbjct: 250 QSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKL 309
Query: 312 LSDDEFV---DNFLVETSKRLAKRHHNFTKGLEQVGI----NCLKSNAGLFFWMDL---- 360
L E +V S R+ K H L ++G + + + G+F + L
Sbjct: 310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQM 369
Query: 361 -RHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNR 419
+ L + + + R A ++ ++
Sbjct: 370 VKRLEETH----------------AVYLVASG----------RASIAGLNQGNVEYVAKA 403
Query: 420 IAAFVQ 425
I V+
Sbjct: 404 IDEVVR 409
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 87.4 bits (215), Expect = 2e-19
Identities = 45/301 (14%), Positives = 95/301 (31%), Gaps = 28/301 (9%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
G PEF++A+ + + G G + +GG L + +ANP V P +
Sbjct: 70 GEPEFQKAMGELI-LGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWP 128
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
+++ G+ + + + E ++A A+ L+ NP G
Sbjct: 129 NHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGA 184
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
L D + S + + D Y + + +I I S
Sbjct: 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEV---LIAASC 241
Query: 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQT--------QYLLASMLSDDEF- 317
SK+ G+ R G + + + ++ QT +++++L+ E
Sbjct: 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELR 301
Query: 318 --VDNFLVETSKRLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDL-----RHLLKE 366
L + + L + + + G+F + + + +E
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEE 361
Query: 367 K 367
Sbjct: 362 F 362
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 78.3 bits (191), Expect = 3e-16
Identities = 70/346 (20%), Positives = 132/346 (38%), Gaps = 24/346 (6%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G+ E R+A A + + + V P+ +++ G + A +ANPGD LV P
Sbjct: 62 HSAGIWELREAFASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
+Y A + GV+++PV + F I + ER KG++++NP NP
Sbjct: 120 FY-ANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT-------KGIVLSNPCNP 171
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G +D ++ LV + L+ DE+Y+ VF + D + +I
Sbjct: 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA-------SALSIESDKVVVI 224
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
S+SK G RVG + + N+ +++ K++ ++ + S+ + F
Sbjct: 225 DSVSKKFSACGARVGCLITRNEELISHAMKLAQGR-LAPPLLEQIGSVGLLNLDDSFFDF 283
Query: 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383
+ K E K + + +L E+ L ++
Sbjct: 284 VRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEF--ARWMLTDFNMDGE 341
Query: 384 KLNVSPGSSFQCTE---PGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
V+P F T R+ ++ D L A++ + ++
Sbjct: 342 TTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKM 386
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 77.9 bits (190), Expect = 4e-16
Identities = 60/350 (17%), Positives = 119/350 (34%), Gaps = 22/350 (6%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G P +Q + K + + G D D ++ G+ A +LI + ++ P
Sbjct: 78 TTEGDPVLKQQILKLLER-MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDP 136
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
Y + V V + E + +++ + +++N NP
Sbjct: 137 AYLGAINAF-RQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 195
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
G T + K+LV ++ +V D+ Y A + ++
Sbjct: 196 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETV------DPIFKIGGPERVVL 249
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
+ + PG R+G+V + + + S L S + LA+ + + L
Sbjct: 250 LNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLK 309
Query: 324 ETSKRLAKRHHNFTKGLEQV-----GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378
T + ++ LE+ G+ +KS GLF W+ L + E A +
Sbjct: 310 PTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMF-EYAKRKK 368
Query: 379 IVNDVKLNVSPGSSFQCTE--PGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ PG F+ + R+ F D+ + + R+ V +
Sbjct: 369 VF------YVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE 412
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 77.2 bits (188), Expect = 7e-16
Identities = 56/347 (16%), Positives = 112/347 (32%), Gaps = 18/347 (5%)
Query: 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLV 140
+ E+++ V K+M D I+ G A + PGD ++
Sbjct: 61 VLGYTGPTEEYKKTVKKWMKDRHQWD--IQTDWIINTAGVVPAVFNAVREFTKPGDGVII 118
Query: 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNP 200
+P Y F + + I + + I + LE + N K L+ +P
Sbjct: 119 ITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKALLFCSP 173
Query: 201 SNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260
NP+G +D L+ + + ++ L DEI+ + + T + +++
Sbjct: 174 HNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT--- 230
Query: 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDN 320
+ SK + G + + N + K T + +
Sbjct: 231 ITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGK 290
Query: 321 FLVETSKRLAKRHHNFTKGLEQVG--INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRT 378
+L K + K E I W+D R L + A+
Sbjct: 291 WLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMD-----HKAMEEF 345
Query: 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425
+++ ++ G F G+ R+ A +Q +L R+ ++
Sbjct: 346 MIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALK 391
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 76.3 bits (186), Expect = 1e-15
Identities = 53/340 (15%), Positives = 104/340 (30%), Gaps = 22/340 (6%)
Query: 84 DYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSP 143
G+ R+A+A+ + G + I + GAT A + L GD + P
Sbjct: 61 PMTGVQALREAIAQKTERLYGYQPD-ADSDITVTAGATEALYAAITALVRNGDEVICFDP 119
Query: 144 YYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
Y ++ IV +F++ + A + +I+ P NP
Sbjct: 120 SYDSYAPA--IALSGGIVKRMALQPPHFRVDWQEFAALLSE------RTRLVILNTPHNP 171
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
T + +L I I ++ DE+Y FS + R+ +
Sbjct: 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHA----SVLAHPQLRERAVAV 227
Query: 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLV 323
S K + G++VG + + + ++ +
Sbjct: 228 SSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQ--LALADMLRAEPEHYL 285
Query: 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383
++ L + + L F +D + + ++ + + +
Sbjct: 286 ALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV----STLDDVEFCQWLTQEH 341
Query: 384 KLNVSPGSSFQCTEPG--WFRVCFANMDDDTLQVALNRIA 421
+ P S F R+CFA + TL A R+
Sbjct: 342 GVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLR 380
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 67.6 bits (163), Expect = 6e-13
Identities = 45/337 (13%), Positives = 96/337 (28%), Gaps = 16/337 (4%)
Query: 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF 148
EF A+A + D +V G ++ + + + A+
Sbjct: 38 DEFLAAIAHWFSTQHY--TAIDSQTVVYG---PSVIYMVSELIRQWSETGEGVVIHTPAY 92
Query: 149 DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTL 208
D G Q + + + + I ++ +P NP G
Sbjct: 93 DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIM--LLCSPQNPTGKVW 150
Query: 209 DRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268
D L+ + + ++ DEI+ V+ + V + +++
Sbjct: 151 TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPA 210
Query: 269 DMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKR 328
G G GR S V + T ++ A +
Sbjct: 211 LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNL 270
Query: 329 LAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS 388
+N + W+DLR L + + AL + ++ K+ +
Sbjct: 271 TYIADKMNA---AFPELNWQIPQSTYLAWLDLRPLNID-----DNALQKALIEQEKVAIM 322
Query: 389 PGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425
PG ++ G+ R+ L+ + + ++
Sbjct: 323 PGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAIR 358
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 37/328 (11%), Positives = 98/328 (29%), Gaps = 53/328 (16%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD 149
+ A++ G P+++++ GA EL++ PG ++ P
Sbjct: 60 AVIENYAQYAG--------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMY 111
Query: 150 RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD 209
+ GV+ V + + + +K + + +P+NP G ++
Sbjct: 112 SVSAETIGVECRTVPTLDNWQLD---------LQGISDKLDGVKVVYVCSPNNPTGQLIN 162
Query: 210 RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269
++L+ K I + + +S + I+ +LSK
Sbjct: 163 PQDFRTLLELTRGKAIVVADEAYIEFCPQASLAG---------WLAEYPHLAILRTLSKA 213
Query: 270 MGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRL 329
L G R G + + + + ++ + L + ++ ++ +
Sbjct: 214 FALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRE--RVAQII 271
Query: 330 AKRHHNFTKGLEQVGINCLKSNAGLFFWMDL-------RHLLKEKTLEGEIALWRTIVND 382
A+R + E + + + + + L + +
Sbjct: 272 AEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGII------------- 318
Query: 383 VKLNVSPGSSFQCTEPGWFRVCFANMDD 410
+ + + G R+ ++
Sbjct: 319 ----LRDQNKQ-PSLSGCLRITVGTREE 341
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (106), Expect = 8e-06
Identities = 37/268 (13%), Positives = 70/268 (26%), Gaps = 40/268 (14%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELI----MFCLANPGDAFLVPSPYY 145
R +A +G DP IV GAT ++ L G + +
Sbjct: 52 IARNQIADLVGA--------DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEH 103
Query: 146 AAFDRDLSW--RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNP 203
A R G ++ + N I + LEAA + + I + +N
Sbjct: 104 KAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAA------MRDDTILVSIMHVNNE 155
Query: 204 LGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263
+G D ++ + I + + + + +
Sbjct: 156 IGVVQDI---AAIGEMCRARGI-IYHVDATQSVGKLPIDL-----------SQLKVDLMS 200
Query: 264 YSLSKDMGLPGFRVGIV---YSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDN 320
+S K G G V G + + + M
Sbjct: 201 FSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE 260
Query: 321 FLVETSKRLAKRHHNFTKGLEQVGINCL 348
+ +RL + G++ + L
Sbjct: 261 EMATEMERLRGLRNRLWNGIKDIEEVYL 288
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 45/350 (12%), Positives = 93/350 (26%), Gaps = 51/350 (14%)
Query: 43 LGLAENQLCFDLIKDWITK----NPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKF 98
L + + DL+ D T + +A++ G E + + + + +
Sbjct: 36 FLLPSSAVYIDLLTDSGTNAMSDHQWAAM--ITGDEAYAGSRNYY------DLKDKAKEL 87
Query: 99 MGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFL------VPSPYYAAFDRDL 152
D I+ GA ++ L S ++
Sbjct: 88 FNY----------DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAH 137
Query: 153 SWRTGVQIVPVHCDISNNF--------KITREALEAAYERAQEASINIKGLIITNPSNPL 204
G + + + + + + + L+ + +I +T S
Sbjct: 138 VELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSA-G 196
Query: 205 GTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-------FSSPKFTSVAEVIQEMDCNR 257
G + LK + I +V D K ++ EVI +M
Sbjct: 197 GQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYA 256
Query: 258 DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEF 317
D ++S G+V ++ + + + T LA
Sbjct: 257 D----ALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMV 312
Query: 318 VDNFLVETSKRLAKRHHNFTK---GLEQVGINCLKSNAGLFFWMDLRHLL 364
+ L R L + GI G ++D + L+
Sbjct: 313 QGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLV 362
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 51/346 (14%), Positives = 109/346 (31%), Gaps = 43/346 (12%)
Query: 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD 149
+ KF+G D + GA A +M LA ++ + +
Sbjct: 51 FIHNQLPKFLGC----------DVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSY 100
Query: 150 RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLD 209
+ R G+ I V ++ IT E E ++ + +IT P G
Sbjct: 101 VA-AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGN--- 155
Query: 210 RDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKD 269
+ D Y + + + I+ S K
Sbjct: 156 ----------LPDVKKIAKVCSEYDVPLLVN--GAYAIGRMPVSLKEIGADFIVGSGHKS 203
Query: 270 MGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNF-----LVE 324
M G +G++ + R+ + + A + + +F ++
Sbjct: 204 MAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIK 262
Query: 325 TSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRTIV 380
++ F +E++GI L N +FF ++ + + +K G L+R +
Sbjct: 263 RWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELK 322
Query: 381 NDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426
+ + PG + +F++ + D+ + LN +++
Sbjct: 323 SRKIHGIKPGLT------RYFKLSTYGLSDEEVDYVLNAFKEIIEK 362
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 37.1 bits (84), Expect = 0.003
Identities = 42/343 (12%), Positives = 89/343 (25%), Gaps = 55/343 (16%)
Query: 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYA 146
QA+A+ I+ G G T + + L + P
Sbjct: 58 DYFHLHQALARHHQ--------VPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEY 109
Query: 147 AFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGT 206
S + D + + ++ L + P+NP G
Sbjct: 110 GRALAQSGCEIRRWSLREADGWQLT----------DAILEALTPDLDCLFLCTPNNPTGL 159
Query: 207 TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266
+R L+++ NI+L+ DE + + F + + R L
Sbjct: 160 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP 219
Query: 267 SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETS 326
+ + + + L A + T
Sbjct: 220 GLRL-----------GYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATW 268
Query: 327 KRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDL--------RHLLKEKTLEGEIALWRT 378
L + F + L Q+ + + + + R LL ++ L
Sbjct: 269 HWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRIL--------- 319
Query: 379 IVNDVKLNVSPGSSFQCTEPGWFRVCFANMDD-DTLQVALNRI 420
+ +++ + ++RV + + L AL +
Sbjct: 320 --------IRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNV 354
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.95 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.95 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.92 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.91 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.89 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.89 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.89 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.88 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.84 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.84 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.83 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.81 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.8 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.77 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.76 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.75 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.75 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.74 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.74 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.73 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.72 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.72 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.71 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.7 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.7 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.7 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.7 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.68 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.67 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.67 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.67 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.67 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.66 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.66 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.66 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.65 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.65 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.65 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.63 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.61 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.6 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.55 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.55 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.54 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.54 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.53 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.49 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.48 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.48 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.48 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.42 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.34 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.24 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.15 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.95 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.83 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.71 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.18 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.47 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 88.96 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 88.69 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.62 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 88.54 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.78 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 87.5 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 87.28 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 87.05 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 86.72 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.33 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 85.99 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 85.85 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 85.55 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 85.06 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 84.67 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.13 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 83.38 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 83.2 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.1 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 83.05 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.91 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.55 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.19 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 82.17 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.91 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 80.82 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.22 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 80.15 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 80.09 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=3e-77 Score=614.33 Aligned_cols=425 Identities=56% Similarity=1.057 Sum_probs=386.7
Q ss_pred cccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccccc
Q 011801 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIF 82 (477)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (477)
||||.|+-|.||||||||+||++|+.||||+..||+|+|+|+++||++++|.+++|+.++|++..+...+.....++..|
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y 80 (431)
T d1m7ya_ 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALF 80 (431)
T ss_dssp CCCSTTC-------CHHHHHHHHHHHSBCCSSSCTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHC
T ss_pred CcchhhcccCCccCCchhhhhhhhhcCCCCCcCCCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999988776666665556677889
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 83 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
+++.|.++||++||+|+++.+|.++.++|++|++|+|+++|+.+++++|++|||.|++++|+|+.+...++...|+++++
T Consensus 81 ~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 160 (431)
T d1m7ya_ 81 QDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVP 160 (431)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEE
T ss_pred cCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceecc
Confidence 99999999999999999999998888999999999999999999999999999999999999999998888666899999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++.+++|.+|.+++++++++..+.+.++++++++|||||||.+++.+++++|+++|++++++||+||+|++++|+++.
T Consensus 161 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~ 240 (431)
T d1m7ya_ 161 IHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPS 240 (431)
T ss_dssp EECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSC
T ss_pred ccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCC
Confidence 99998889999999999999998888899999999999999999999999999999999999999999999999999998
Q ss_pred cccHHHhhhhccC-----CCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhh
Q 011801 243 FTSVAEVIQEMDC-----NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEF 317 (477)
Q Consensus 243 ~~s~~~~~~~~~~-----~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~ 317 (477)
+.++.++..+... ..+++++++||||.||++|+|+||++++++.+.....+...+..+++..|.++++++.+.++
T Consensus 241 ~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~ 320 (431)
T d1m7ya_ 241 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKL 320 (431)
T ss_dssp CCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchh
Confidence 9998887553211 23689999999999999999999999998888777777777777888999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC
Q 011801 318 VDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE 397 (477)
Q Consensus 318 ~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~ 397 (477)
.++++.+.+++++++++.+.+.|++.|+++.++++|+|+|++++..+...+++++.++++++++++||.+.||+.|++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~ 400 (431)
T d1m7ya_ 321 TKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE 400 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCC
Confidence 78899999999999999999999999999999999999999999988888888888999999999999999999999989
Q ss_pred CCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 398 PGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 398 ~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++||||||+..++++++++++||+++++++
T Consensus 401 ~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 401 PGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp TTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 999999998778899999999999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=6.8e-77 Score=611.08 Aligned_cols=424 Identities=73% Similarity=1.280 Sum_probs=384.2
Q ss_pred cccchhhccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccHHHHHHHHHhCCCCccccccccccccccccc
Q 011801 3 ILSKIATNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIF 82 (477)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y 82 (477)
+|||+|||+.|||+|+||+||++|+.||||+..||.|+|+|+++||++++|.+++++.++|....+. ++...+.++..|
T Consensus 1 ~~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T d1iaya_ 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccCCCCCCChhhHhHHHhccCCCCCcCCCCceEEeecccCccchHHHHHHHHhCCchhhhH-hHhhhCHHhccC
Confidence 5899999999999999999999999999999999999999999999999999999999988765443 334445667889
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEE
Q 011801 83 QDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVP 162 (477)
Q Consensus 83 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~ 162 (477)
+++.|+++||++||+|+++.+|..+.+++++|++|+|+++++.++++++++|||.|++++|+|+.|...+....|+++++
T Consensus 80 ~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~ 159 (428)
T d1iaya_ 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred cCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEE
Confidence 99999999999999999999998888999999999999999999999999999999999999999998887666999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
++++..++|++|.++++.+++...+.+.++++++++|||||||.+++.+++++|+++|++++++||+||+|++++|+++.
T Consensus 160 v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~ 239 (428)
T d1iaya_ 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSC
T ss_pred eecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccc
Confidence 99998899999999999999888888889999999999999999999999999999999999999999999999999988
Q ss_pred cccHHHhhhhc---cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHH
Q 011801 243 FTSVAEVIQEM---DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 243 ~~s~~~~~~~~---~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+.++.++.... ....+++++++||||.|+++|+|+||+++.++.+...++....+..++...|.++++++.+.++++
T Consensus 240 ~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~ 319 (428)
T d1iaya_ 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVD 319 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHH
T ss_pred ccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhcccc
Confidence 88888775432 124578999999999999999999999998888888888888888788999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+++++.+++++++++.+.+.|+..|+++.++++|+|+|++++.......++++.++++.+++++||.+.||+.|++.+++
T Consensus 320 ~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g 399 (428)
T d1iaya_ 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPG 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSS
T ss_pred ccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCC
Confidence 99999999999999999999999999999999999999999988887888888899999999999999999999998999
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 400 WFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 400 ~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
||||||+..++++++++++||++++..+
T Consensus 400 ~~Ris~a~~~~~~l~~al~Rl~~~l~~~ 427 (428)
T d1iaya_ 400 WFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999998778889999999999999764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.1e-56 Score=450.96 Aligned_cols=360 Identities=21% Similarity=0.349 Sum_probs=307.0
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.++|+|+.+++.++ ++.+.+.+.+.-+ +....|++..|.++||++||+|+.+..+.. ..++++|++
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~-~~~~~~i~~ 91 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNGIE-ADPKTEIMV 91 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHCCC-CCTTTSEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCccCCCCCcCCHHHHHHHHHHHHhhcccc-CCChheeee
Confidence 35899999998775 4566666655311 124579999999999999999998765532 346778999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..++.+|++|||.|++++|+|+.|...++.. |.+++.++++.+++|.+|+++|++++.+ ++++++
T Consensus 92 t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 164 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALI 164 (388)
T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred ccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHc-CCEEEEeecccccCCCCCHHHHHHhCcc------CCeEEE
Confidence 999999999999999999999999999999999998887 9999999998888999999999988754 789999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|++++++||+||+|.++.+.+..+.++..+.. ..+++++++||||.||+||+|
T Consensus 165 ~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 165 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG----MFERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT----CGGGEEEEEESTTTTTCGGGC
T ss_pred ECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccC----CCCeEEEEeCChhhccCcccc
Confidence 9999999999999999999999999999999999999998888877777766543 457899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
+||++++++.+....+.. ......+.+.|.+++.++.++++ .+++.+.++.+++++..+.+.|.+.++.+..|++|+|
T Consensus 241 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~f 319 (388)
T d1gdea_ 241 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 319 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred EEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEE
Confidence 999999776555544433 23344677899999999999876 6677888889999999999999999999999999999
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+|++++.... +..++++.++++.||.+.||+.|+..+++|+||||+. ++++++++++||++++++++
T Consensus 320 l~~~l~~~~~-----~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 320 IFPRIRDTGL-----TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp ECCBCGGGTC-----CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCC-----CHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhcC
Confidence 9999985211 1236788899999999999999998788999999984 88999999999999998865
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=8e-56 Score=448.12 Aligned_cols=354 Identities=18% Similarity=0.363 Sum_probs=301.2
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
.+||+|+.+++.++ ++.+.+++++.-+ .....|++..|.++||++||+|+.+.+| +.+++++|++
T Consensus 30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~g--~~~~~~~i~i 95 (388)
T d1j32a_ 30 IDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcc--cCCCCceEEE
Confidence 36899999988775 4666666655311 1345799999999999999999998887 5578999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++++..+++++++|||.|++++|+|+.|...++.. |.+++.++++.+++|.+|++++++++++ ++++++
T Consensus 96 t~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~ 168 (388)
T d1j32a_ 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEEE
Confidence 999999999999999999999999999999999988877 9999999998888899999999988754 889999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||.+++.+++++|+++|+++|++||+||+|..+.|+++.+.++.....+ ..+++++++||||.||+||+|
T Consensus 169 ~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~---~~~~~i~~~S~SK~~~~~GlR 245 (388)
T d1j32a_ 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE---AYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHHTEEEEEESTTTTTCTTTC
T ss_pred ECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc---cccceeEecCChhhhhcchhH
Confidence 99999999999999999999999999999999999999998988887777655331 236789999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceE
Q 011801 277 VGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGL 354 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~ 354 (477)
+||++++++.+....+.. .....++.+.|.++..++.+. ++++++.++.++++++.+.+.|++. |+.+.+|++|+
T Consensus 246 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~ 322 (388)
T d1j32a_ 246 VGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred eEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceE
Confidence 999999766554433322 233457788998888887654 3468888999999999999999987 89999999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+|++++.... ++.++++.+++++||.+.||+.|+. ++|+||+|+. ++++++++++||++++++
T Consensus 323 ~l~~~l~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~-~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 323 YMFPSIAKTGR-----SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp EECCBCGGGTC-----CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC-----CHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHHH
Confidence 99999986422 2346889999999999999999974 6899999985 899999999999999975
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2e-54 Score=436.90 Aligned_cols=351 Identities=20% Similarity=0.382 Sum_probs=293.4
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|+++++.++ ++.+.+.+++.-+ +...+|++..|.++||++|++|+.+.++ +.+++++|+
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~~~~~~~--~~~~~~~i~ 95 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETI 95 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEE
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCCCCHHHHHHHHhhhhhhcc--cccccccce
Confidence 346999999998775 4566666655211 1345799999999999999999988777 567899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+..++.+++++||.|++++|+|+.|...++.. |.+++.+++++.++|.+|++++++++.+ +++++
T Consensus 96 it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i 168 (382)
T d1b5pa_ 96 VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKAL 168 (382)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEE
T ss_pred ecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEE
Confidence 9999999999999999999999999999999999888877 9999999998888899999999887753 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++||||||||.+++.+++++|+++|+++|++||+||+|+++.|++..+.+. .. ..+++++++||||.|++||+
T Consensus 169 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~------~~~~~i~~~s~SK~~~~~Gl 241 (382)
T d1b5pa_ 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPG-RV------APEHTLTVNGAAKAFAMTGW 241 (382)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGG-GT------CTTTEEEEEESTTTTTCGGG
T ss_pred EECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHH-Hc------CCCCEEEEecchhhccCcHh
Confidence 999999999999999999999999999999999999999998887665442 22 45789999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHH-hcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 276 RVGIVYSFNDTVVNCGRK-MSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~-~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
|+||++++++.+...... .......+...|.++...+.+....+.++...++.++++++.+.+.+.+.|+.+..|++|+
T Consensus 242 R~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~ 321 (382)
T d1b5pa_ 242 RIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAF 321 (382)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTT
T ss_pred heEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceE
Confidence 999999976655443332 2223346778888888888776665778888889999999999999999999999999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
|+|+++++... ++..+++.+. ++||.+.||+.|+. ++|+||+|+. ++|+++++++||++++
T Consensus 322 ~~~~~~~~~~~-----~~~~~~~~l~-e~gV~v~PG~~F~~--~~~iRis~~~-~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 322 YVLMDTSPIAP-----DEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVL 382 (382)
T ss_dssp EEEEECTTTCS-----SHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGGC
T ss_pred EEeEeCCCCCC-----CHHHHHHHHH-HCCEEEEeCcccCC--CCeEEEEEcC-CHHHHHHHHHHHHHhC
Confidence 99999975321 2234555554 56999999999974 6899999985 8899999999998763
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.1e-53 Score=435.89 Aligned_cols=380 Identities=18% Similarity=0.318 Sum_probs=299.1
Q ss_pred hhhhcCCCCCCCCCCccccccccccccccH-----HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHH
Q 011801 23 WKAFDRNPFHPTQNPGGVIQLGLAENQLCF-----DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAK 97 (477)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~ 97 (477)
+++. .+.+.+..+|.++|+|+++++.++. +.+.+.+++..+ ......|++..|+++||++||+
T Consensus 16 ir~~-~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~LReaia~ 83 (412)
T d1bw0a_ 16 IRTV-SDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID-----------SQECNGYFPTVGSPEAREAVAT 83 (412)
T ss_dssp HHHH-HHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH-----------TTCSSSCCCTTCCHHHHHHHHH
T ss_pred HHHH-HHhcCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhh-----------CCCCCCCCCCcCCHHHHHHHHH
Confidence 4443 2345677888899999999876532 333343333100 1234579999999999999999
Q ss_pred HHhcccCC----CCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCccc
Q 011801 98 FMGKGRGG----RVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKI 173 (477)
Q Consensus 98 ~~~~~~g~----~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i 173 (477)
|+.+.++. +..+++++|++|+|+++|+..++++|+++||.|++++|+|+.|...++.. |++++++++++.++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~ 162 (412)
T d1bw0a_ 84 WWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEA 162 (412)
T ss_dssp HHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEE
T ss_pred HHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhcc-Cccccccccccccccch
Confidence 99876532 24578999999999999999999999999999999999999999988887 99999999998889999
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 174 TREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
+++++++++.+ ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++....+........
T Consensus 163 ~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~ 236 (412)
T d1bw0a_ 163 DLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF 236 (412)
T ss_dssp CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS
T ss_pred hhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccc
Confidence 99999887643 889999999999999999999999999999999999999999999988875433322221110
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHH-----HHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT-----VVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~-----i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
.....+++++||||.+|+||+|+||++++++. +.....+.. .....++..|..+...+.+.. ++++.+.++
T Consensus 237 -~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 313 (412)
T d1bw0a_ 237 -ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVA 313 (412)
T ss_dssp -CCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHH
T ss_pred -ccccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--ccccccccc
Confidence 03456888999999999999999999986532 222222222 222345555555555544432 567888999
Q ss_pred HHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec
Q 011801 328 RLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~ 406 (477)
+++++++.+.+.|.+. |+.+..|++|+|+|++++... ......+.++++.+++++||.+.||+.|+ .++||||||+
T Consensus 314 ~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~iRis~~ 390 (412)
T d1bw0a_ 314 KIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-YRDIKTDVEFFEKLLEEENVQVLPGTIFH--APGFTRLTTT 390 (412)
T ss_dssp HHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-BSSCCSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECC
T ss_pred hhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhh-cCCCCCHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEc
Confidence 9999999999999775 899999999999999987432 22234456899999999999999999997 4789999998
Q ss_pred cCCHHHHHHHHHHHHHHHhhhh
Q 011801 407 NMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 407 ~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
. ++++++++++||++|++++.
T Consensus 391 ~-~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 391 R-PVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHB
T ss_pred C-CHHHHHHHHHHHHHHHHhcC
Confidence 5 88999999999999998753
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.9e-53 Score=429.28 Aligned_cols=355 Identities=21% Similarity=0.353 Sum_probs=294.4
Q ss_pred Cccccccccccc---cc-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC
Q 011801 37 PGGVIQLGLAEN---QL-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD 112 (477)
Q Consensus 37 ~~~~i~l~~~~n---~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ 112 (477)
...||+|+.+++ .+ +++.+.+.+.+..+ .....|++..|.++||++||+++.+.+| +.++++
T Consensus 29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~ 94 (395)
T d1xi9a_ 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPD 94 (395)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHhhhhccc--cccccc
Confidence 345999999874 23 34556666655311 1234699999999999999999999887 567899
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
+|++|+|+++++.+++.+++++||.|++++|+|+.|...++.. |.+++++++...++|.+|.+++++++.+ ++
T Consensus 95 ~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~ 167 (395)
T d1xi9a_ 95 DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RT 167 (395)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TE
T ss_pred ccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhc-CCEEEEEeccccccccchHHHHHHhhcc------cc
Confidence 9999999999999999999999999999999999999988887 9999999988788999999999887754 88
Q ss_pred eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCC
Q 011801 193 KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL 272 (477)
Q Consensus 193 k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~ 272 (477)
++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+.+. .+..... ..+++++++||||.|++
T Consensus 168 ~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~-----~~~~vi~~~S~SK~~~~ 241 (395)
T d1xi9a_ 168 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH-ISPGSLT-----KDVPVIVMNGLSKVYFA 241 (395)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC-CCHHHHC-----SSSCEEEEEESTTTTCC
T ss_pred cEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc-cchhhcC-----CCCCEEEEeCcchhccc
Confidence 99999999999999999999999999999999999999999998887654 4444433 45789999999999999
Q ss_pred CCceEEEEEeCCH-----HHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-C
Q 011801 273 PGFRVGIVYSFND-----TVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-I 345 (477)
Q Consensus 273 ~G~RvG~i~~~~~-----~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i 345 (477)
||+|+||+++.+. .+.+....+. ....++.+.|.++..++.+. ++++++.++.++++++.+.+.|++.+ +
T Consensus 242 ~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 318 (395)
T d1xi9a_ 242 TGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEIPGI 318 (395)
T ss_dssp GGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred chhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999876432 2222222222 23347788999888888654 34688888999999999999999985 5
Q ss_pred eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 346 NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 346 ~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
.+..|++|+|+|++++.... .++.+++..+++++||.+.||+.|+..+++||||+|+. ++++++++++||+++++
T Consensus 319 ~~~~p~gg~~~~~~l~~~~~----~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal~rl~~~l~ 393 (395)
T d1xi9a_ 319 STTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFMK 393 (395)
T ss_dssp ECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred eecCCCeeEEEeEECCCCCC----CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 77889999999999985321 22346888899999999999999998788999999985 88999999999999997
Q ss_pred h
Q 011801 426 Q 426 (477)
Q Consensus 426 ~ 426 (477)
+
T Consensus 394 e 394 (395)
T d1xi9a_ 394 E 394 (395)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.7e-52 Score=427.78 Aligned_cols=365 Identities=19% Similarity=0.258 Sum_probs=297.8
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~~ 116 (477)
++|+|+.+...++ ++.+.+.+.+..+.. -.....|++..|.++||++||+|+.+.+| +.++| ++|++
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~---------~~~~~~Y~~~~G~~~lReaiA~~~~~~~g--~~~~p~~~I~i 95 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSP---------DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLV 95 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCS---------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCC---------CccCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCccceEEE
Confidence 5799999986554 466666665531110 01245799999999999999999998887 45665 79999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCC--------CcccCHHHHHHHHHHHHHh
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISN--------NFKITREALEAAYERAQEA 188 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~--------~f~i~~~~l~~~~~~~~~~ 188 (477)
|+|+++|+.++++++++|||.|++++|+|+.|...+... |.+++.++++.++ .|.++.+++.....
T Consensus 96 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 169 (418)
T d2r5ea1 96 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----- 169 (418)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC-----
T ss_pred cCCCchhhhhhhhhccccccceeccccccchhhHHHHHc-CCeEEEEEecccccccchhhhhhhhhHHHHhhhhh-----
Confidence 999999999999999999999999999999999999887 9999999986543 36677888776653
Q ss_pred CCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCc
Q 011801 189 SINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSK 268 (477)
Q Consensus 189 ~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK 268 (477)
.++++++++|||||||.+++.+++++|+++|++++++||+||+|..+.+++....++..+.+ ..+++++++|+||
T Consensus 170 -~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~----~~~~~i~~~S~SK 244 (418)
T d2r5ea1 170 -EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPG----MWERTITIGSAGK 244 (418)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----TGGGEEEEEEHHH
T ss_pred -ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccccccccc----ccceeeeeecCCc
Confidence 38899999999999999999999999999999999999999999998888776677666544 4578999999999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChh----hHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 269 DMGLPGFRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDE----FVDNFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 269 ~~g~~G~RvG~i~~~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~----~~~~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+++||+|+||++++++.+....+... ....++++.|.+++.++.+.. ..+.++.+.++.++.+++.+.+.|++.
T Consensus 245 ~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d2r5ea1 245 TFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 324 (418)
T ss_dssp HTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc
Confidence 999999999999997765544443332 234477888888777664321 124578888999999999999999999
Q ss_pred CCeEecCCceEEEEeeccchhhcc------CchHHHHHHHHHHHhcCeEEeCCCCCCCC-----CCCEEEEEeccCCHHH
Q 011801 344 GINCLKSNAGLFFWMDLRHLLKEK------TLEGEIALWRTIVNDVKLNVSPGSSFQCT-----EPGWFRVCFANMDDDT 412 (477)
Q Consensus 344 gi~~~~~~~g~~~~~~l~~~~~~~------~~~~e~~l~~~ll~~~gI~v~pg~~f~~~-----~~~~~Rl~~~~~~~e~ 412 (477)
|+++..|++|+|+|++++...... ...++.++++.+++++||.+.||+.|+.. +++||||||+. ++|+
T Consensus 325 g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~-~~e~ 403 (418)
T d2r5ea1 325 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDEN 403 (418)
T ss_dssp TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCS-CHHH
T ss_pred CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecC-CHHH
Confidence 999999999999999998643221 22355689999999999999999999754 25799999975 8899
Q ss_pred HHHHHHHHHHHHhh
Q 011801 413 LQVALNRIAAFVQQ 426 (477)
Q Consensus 413 l~~~l~~l~~~~~~ 426 (477)
+++++++|++++.+
T Consensus 404 l~~a~~rl~~~lg~ 417 (418)
T d2r5ea1 404 LQKAAEILRKWKGS 417 (418)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999999853
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-51 Score=420.03 Aligned_cols=363 Identities=20% Similarity=0.338 Sum_probs=297.4
Q ss_pred cccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCC-CcEE
Q 011801 38 GGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDP-DRIV 115 (477)
Q Consensus 38 ~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-~~i~ 115 (477)
.++|+|+.+++..+ ++.+.+.+++.-.. + .....|++..|.++||++||+++++.+| +.++| ++|+
T Consensus 25 ~dvI~l~~G~p~~~~p~~v~~a~~~al~~------~----~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~ 92 (418)
T d1w7la_ 25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSG------D----FMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 92 (418)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTSS------C----GGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHhC------C----CcccCCCCCcCCHHHHHHHHHHHHHHhC--CCCCccccee
Confidence 35899999997665 46677777653211 0 1234799999999999999999998777 44565 6899
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC----------CCCcccCHHHHHHHHHHH
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI----------SNNFKITREALEAAYERA 185 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~----------~~~f~i~~~~l~~~~~~~ 185 (477)
+|+|+++|+.+++++++++||.|++++|+|+.|...+... |.+++.+++.. +.+|.+|.+++....
T Consensus 93 it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--- 168 (418)
T d1w7la_ 93 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF--- 168 (418)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHC---
T ss_pred eccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHc-CCEeeccccccccccccccccccCcccchhhhhccc---
Confidence 9999999999999999999999999999999999988877 99998888653 245777877666543
Q ss_pred HHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEec
Q 011801 186 QEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYS 265 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~S 265 (477)
..++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+++.+.++.++.+ ..++++++.|
T Consensus 169 ---~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~----~~~~~i~~~S 241 (418)
T d1w7la_ 169 ---TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG----MWERTLTIGS 241 (418)
T ss_dssp ---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT----TGGGEEEEEE
T ss_pred ---cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccc----cccccceecc
Confidence 348899999999999999999999999999999999999999999999999887788776644 4578999999
Q ss_pred CCcccCCCCceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhH----HHHHHHHHHHHHHHHHHHHHH
Q 011801 266 LSKDMGLPGFRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFV----DNFLVETSKRLAKRHHNFTKG 339 (477)
Q Consensus 266 lSK~~g~~G~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~----~~~~~~~~~~l~~r~~~l~~~ 339 (477)
+||.+++||+|+||++++++.+ ..+.+.. ....+++++|.++..+|.+.... .+++...++.++++++.+.+.
T Consensus 242 ~SK~~~~pG~RvG~~v~~~~~~-~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 242 AGKTFSATGWKVGWVLGPDHIM-KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp HHHHTTCGGGCCEEEECCHHHH-HHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCCCCcccccccchhhh-hhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Confidence 9999999999999999966544 4443332 23447889999888887754321 356778889999999999999
Q ss_pred HhhCCCeEecCCceEEEEeeccchhhcc-------CchHHHHHHHHHHHhcCeEEeCCCCCCC-----CCCCEEEEEecc
Q 011801 340 LEQVGINCLKSNAGLFFWMDLRHLLKEK-------TLEGEIALWRTIVNDVKLNVSPGSSFQC-----TEPGWFRVCFAN 407 (477)
Q Consensus 340 L~~~gi~~~~~~~g~~~~~~l~~~~~~~-------~~~~e~~l~~~ll~~~gI~v~pg~~f~~-----~~~~~~Rl~~~~ 407 (477)
|++.|+++.+|+||+|+|++++...... ....+.+++..+++++||.|.||+.|+. ..++||||||+.
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred hhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcC
Confidence 9999999999999999999998644321 1123457899999999999999999974 346899999985
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 011801 408 MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 408 ~~~e~l~~~l~~l~~~~~ 425 (477)
+++++++++++|+++..
T Consensus 401 -~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 401 -DEATLQAMDEKLRKWKV 417 (418)
T ss_dssp -CHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHHhc
Confidence 89999999999999864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.8e-51 Score=409.35 Aligned_cols=346 Identities=24% Similarity=0.410 Sum_probs=287.1
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
...||+|+.+++.++ ++.+.+.+.+.-+ +....|++..|.++||+++++++.+.++ +..++++|+
T Consensus 27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~i~ 92 (375)
T d1o4sa_ 27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 92 (375)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCeEECCCcCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCcCCHHHHHHHHhhhhhccc--ccccccccc
Confidence 456999999988775 4556666554211 1345799999999999999999998877 567899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++|+..++++|+++||.|++++|+|+.|...+... |...+.++++..+++.++.+.++.... .+++++
T Consensus 93 ~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 165 (375)
T d1o4sa_ 93 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLV------GKTKAV 165 (375)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCC------TTEEEE
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcc-ccccccccccccccccchhHHHHHhhc------cCccEE
Confidence 9999999999999999999999999999999999888876 999999999888889999988877543 388999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|++|+++||+||+|..+.++.... +.....+ ..+++++++||||.+|+||+
T Consensus 166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~----~~~~~i~~~S~SK~~~l~G~ 240 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT-SILDVSE----GFDRIVYINGFSKSHSMTGW 240 (375)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC-CHHHHCS----SSTTEEEEEESTTTTTCGGG
T ss_pred EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccc-ccccccC----CCCCEEEEeechhhccCCcc
Confidence 999999999999999999999999999999999999999887766553 3333333 56899999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGL 354 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~ 354 (477)
|+||++++++.+.......... ...+...|......+... ....++.++++++.+.+.|++.|+++..|++|+
T Consensus 241 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~ 314 (375)
T d1o4sa_ 241 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAF 314 (375)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSS
T ss_pred ccccccccccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhcCceEecCCccE
Confidence 9999999776655444333222 335566676666665543 234566788899999999999999999999999
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
|+|++++.. +.+++.++++++||.+.||+.|+ .++||||+++. ++++++++++||+++++
T Consensus 315 f~~~~~~~~--------~~~~~~~ll~~~gV~v~pG~~F~--~~g~iRis~~~-~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 315 YLFFKVRGD--------DVKFCERLLEEKKVALVPGSAFL--KPGFVRLSFAT-SIERLTEALDRIEDFLN 374 (375)
T ss_dssp EEEEECSSC--------HHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCC--------HHHHHHHHHHhCCEEEEEccccC--CCCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 999999841 34688889998999999999997 47899999985 89999999999999986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.9e-51 Score=416.69 Aligned_cols=359 Identities=18% Similarity=0.223 Sum_probs=287.3
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..++|+|++++..++ ++.+.+++.+.-+ ....+|+ .|.++||++||+|+++.+| +.+++++|+
T Consensus 30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~------------~~~~~Y~--~g~~~Lr~aia~~~~~~~g--~~~~~~~I~ 93 (394)
T d1c7na_ 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYT--GPTEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (394)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSB--CCCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------CCCcCCC--CCCHHHHHHHHHHHHHhcC--CCCCCcceE
Confidence 457999999998775 4667776665311 1234575 4789999999999998887 567899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHHhCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQEASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~ 194 (477)
+|+|+++|+.++++++++|||.|++++|+|.++...+... |.+.++++.. .++.|.+|.+.++.++. +.++++
T Consensus 94 vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~ 167 (394)
T d1c7na_ 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKA 167 (394)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHT-----CTTEEE
T ss_pred eeccchhhhhhhhccccccccccccccCcccchhhHHhhh-hhcccccccccccccccchhhhhhhhhc-----cccceE
Confidence 9999999999999999999999999999999999888877 9998888764 34567889888887664 347999
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
+++||||||||++++.+++++|+++|++++++||+||+|.+++|++..+.+......+ ..+++++++|+||.+|++|
T Consensus 168 i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~---~~~~~i~~~s~SK~~~~~G 244 (394)
T d1c7na_ 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQ---LADKTITFTAPSKTFNIAG 244 (394)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHH---HHTTEEEEECSHHHHTCGG
T ss_pred EEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcc---cccceeecccccccccccc
Confidence 9999999999999999999999999999999999999999999987665554433221 2478899999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHhcccCC-Cc-hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKMSSFGL-VS-SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~~~~~~-vs-~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~ 350 (477)
+|+||+++++..+.+..++...... .+ ...+.+++ ....... +++.++.++.++++++.+.+.++.. ++.+..+
T Consensus 245 ~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 322 (394)
T d1c7na_ 245 MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKAC-EICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI 322 (394)
T ss_dssp GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHH-HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC
T ss_pred cccccccccChhhhhhhhhhhhhccccccccccchhh-hhhhcch-hhhhcccccccchhhhhhhhhhhccccceeecCC
Confidence 9999999998888776665543322 22 23233322 2222222 5567788888888888888888765 6777889
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+||+|+|++++.... +..++++.+++++||.+.||+.|+..+++|+||||+. ++++++++++||++++++.+
T Consensus 323 ~g~~~~~~~~~~~~~-----~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 323 EGTYLQWIDFRALKM-----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp SBSSEEEEECGGGCC-----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred CceeEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHHhcC
Confidence 999999999985311 2236888899999999999999988778999999984 88999999999999998753
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-50 Score=404.23 Aligned_cols=352 Identities=15% Similarity=0.239 Sum_probs=283.9
Q ss_pred ccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 40 VIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 40 ~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
+|.|++++..+++ +.+.+.+.+..+ .....|++..| +++|++||+++.+++| +++++++|++|+
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~------------~~~~~Y~~~~g-~~lr~~ia~~~~~~~g--~~~~~~~i~it~ 65 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRWKN-DEFLAAIAHWFSTQHY--TAIDSQTVVYGP 65 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCSCC-HHHHHHHHHHHHHHSC--CCCCGGGEEEES
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCC-HHHHHHHHHHHHHHhC--CCCCcceEEEeC
Confidence 5788888877764 667777666311 12347999888 7899999999998887 567899999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEEE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQEASINIKGLII 197 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vii 197 (477)
|+++++..++.++++|||+|++++|+|+.|...++.. |.++++++++. .++|.+|++.+++.+.+ .++|++++
T Consensus 66 G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l 139 (361)
T d1d2fa_ 66 SVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLL 139 (361)
T ss_dssp CHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEE
T ss_pred CHHHHHHHHhhhccccccccccccccccchhHHHHhh-cceEEeecccccccccccccccchhhccc-----CCceeEEe
Confidence 9999999999999999999999999999999888877 99999998764 46788999999988753 48999999
Q ss_pred eCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceE
Q 011801 198 TNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRV 277 (477)
Q Consensus 198 ~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~Rv 277 (477)
+|||||||.+++.+++++|+++|+++|++||+||+|.+++|++....++... ..++++++.|+||.+|++|+|+
T Consensus 140 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~------~~~~~v~~~s~SK~~~~~g~R~ 213 (361)
T d1d2fa_ 140 CSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV------ARGDWALLTSGSKSFNIPALTG 213 (361)
T ss_dssp ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT------CCSSEEEEECSHHHHTCGGGCC
T ss_pred cccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc------cccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999998887766665544 4578899999999999999999
Q ss_pred EEEEeCCHHHHH-HHHHhcccCCC---chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEecCC
Q 011801 278 GIVYSFNDTVVN-CGRKMSSFGLV---SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV--GINCLKSN 351 (477)
Q Consensus 278 G~i~~~~~~i~~-~~~~~~~~~~v---s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~~~~~ 351 (477)
||++.+++.... ....+...... +...+.+....+.. .+.+.++.+..+++|++.+.+.+.+. ++.+.+++
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~ 290 (361)
T d1d2fa_ 214 AYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ 290 (361)
T ss_dssp EEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS
T ss_pred eeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhhhhcccccccccC
Confidence 999887655433 33333322222 22333332222222 24567777888888888888877654 67888899
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+|+|+|++++... .+..+++.++++++||.|.||+.|+..+++|||||++. +++++++++++|++++++.
T Consensus 291 gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 291 STYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp BCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHhc
Confidence 9999999987421 12336888999999999999999998788999999984 8899999999999999874
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-49 Score=400.88 Aligned_cols=350 Identities=19% Similarity=0.281 Sum_probs=289.8
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCC-cEEE
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPD-RIVM 116 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~-~i~~ 116 (477)
++|+|+.+...++ ++.+.+.+.+.-. +....|++..|.++||++||+|+.+.+| +.++++ +|++
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~v 92 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 92 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCcCCHHHHHHHHHHHHHHhC--CCCCCCceEEe
Confidence 7899999987664 4567776655311 2345799999999999999999998877 456676 5999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 117 GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
|+|+++|+.+++++++++||.|++++|+|+.+...+... |..++.++.+ .+++.+|.++++.++.+ ++++++
T Consensus 93 t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~-~~~~~~d~~~l~~~~~~------~~~~i~ 164 (382)
T d1u08a_ 93 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQ-PPHFRVDWQEFAALLSE------RTRLVI 164 (382)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECC-TTTCCCCHHHHHHHCCT------TEEEEE
T ss_pred ccchHHHHHHHHhhcccccceEEEecccccchhhhhhhc-cccceecccc-cccccCCHHHHhhhhcc------CccEEE
Confidence 999999999999999999999999999999999888877 9888888876 46788899999887654 899999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||++++.+++++|+++|.+++++++.||+|....+.+....+...... ..++++++.|+||.+++||+|
T Consensus 165 l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~SK~~~~pG~R 240 (382)
T d1u08a_ 165 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ----LRERAVAVSSFGKTYHMTGWK 240 (382)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH----HHTTEEEEEEHHHHTTCGGGC
T ss_pred ECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccccccc----ccCcEEEEeeccccccCCccc
Confidence 9999999999999999999999999999999999999987776644444333322 347899999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
+||++++++.+....+.. .....++.+.|.+++.++.++ ++++.+.++.++++++.+.+.+...|+.+.+++||+|
T Consensus 241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~ 317 (382)
T d1u08a_ 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYF 317 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSE
T ss_pred chhhhccchhHHHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEE
Confidence 999999666554433322 233458889999999999754 3467888999999999999999999999999999999
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+|++++.... .++.++++++++++||.+.||+.|+.. +.+||||||+. ++|+++++++||++
T Consensus 318 ~~~~~~~~~~----~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 318 LLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 381 (382)
T ss_dssp EEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EEEecCCCCC----CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence 9999985321 223468899999999999999999753 35799999985 89999999999975
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-48 Score=399.45 Aligned_cols=365 Identities=18% Similarity=0.250 Sum_probs=289.2
Q ss_pred Cccccccccccc---cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 37 PGGVIQLGLAEN---QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 37 ~~~~i~l~~~~n---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
..++|+|+.+.+ .+|.+.+.+..++.-. ........|++..|.++||++||+|+.+.+|.. .+++++
T Consensus 37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~---------~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~-~~~~~~ 106 (420)
T d1vp4a_ 37 DKDAISFGGGVPDPETFPRKELAEIAKEIIE---------KEYHYTLQYSTTEGDPVLKQQILKLLERMYGIT-GLDEDN 106 (420)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHH---------HSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCC-SCCGGG
T ss_pred CCCcEecCCcCCCCccCCHHHHHHHHHHHHh---------hCCccccCCCCCcCCHHHHHHHHHHHHHHhCCC-CCCHHH
Confidence 347999998753 2355555555443200 001234579999999999999999999887732 268999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC--CC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS--IN 191 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~--~~ 191 (477)
|++|+|+++|+.+++.++++|||.|++++|+|+.|...++.. |++++.+++++. .++++.++..+....... .+
T Consensus 107 I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 182 (420)
T d1vp4a_ 107 LIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQ 182 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGG
T ss_pred eEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHH-hhhccccccccc---ccccchhhhhhhhhHHHhhccc
Confidence 999999999999999999999999999999999999888877 999999998753 478888888776543321 13
Q ss_pred e-eEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCccc
Q 011801 192 I-KGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDM 270 (477)
Q Consensus 192 ~-k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~ 270 (477)
+ .+++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+++...+..... ..+++++++|+||.+
T Consensus 183 ~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-----~~~~~i~~~s~sk~~ 257 (420)
T d1vp4a_ 183 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-----GPERVVLLNTFSKVL 257 (420)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-----CTTTEEEEEESTTTT
T ss_pred cceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-----cccceeEEecccccc
Confidence 3 4556789999999999999999999999999999999999999989887666655442 568899999999988
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-----C
Q 011801 271 GLPGFRVGIVYSFNDTVVNCGRKMSSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-----G 344 (477)
Q Consensus 271 g~~G~RvG~i~~~~~~i~~~~~~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-----g 344 (477)
+ ||+|+||++++++.+....+..... ...+.+.|.+++.++.+..+ .+++++.++.++++++.+.+.|++. |
T Consensus 258 ~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g 335 (420)
T d1vp4a_ 258 A-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPG 335 (420)
T ss_dssp C-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred c-cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccchhhhhhhhccCCC
Confidence 5 9999999999665544433322222 34678899998888887665 6677788888888888888888764 7
Q ss_pred CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCC--CCEEEEEeccCCHHHHHHHHHHHHH
Q 011801 345 INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTE--PGWFRVCFANMDDDTLQVALNRIAA 422 (477)
Q Consensus 345 i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~--~~~~Rl~~~~~~~e~l~~~l~~l~~ 422 (477)
+++.+|++|+|+|++++...+... +++ ++.+.||.|.||+.|+..+ ++|+||||+..+++++++++++|++
T Consensus 336 ~~~~~p~gg~f~~~~~~~~~d~~~------~~~-~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~ 408 (420)
T d1vp4a_ 336 VKWVKSEGGLFIWLTLPEGFDTWE------MFE-YAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLRE 408 (420)
T ss_dssp CEECCCSBSSEEEEECCTTCCTTT------THH-HHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHH
T ss_pred cEEecCCceEEEEEECCCCCCHHH------HHH-HHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHH
Confidence 899999999999999987554432 444 3456799999999998644 5799999987789999999999999
Q ss_pred HHhhhhc
Q 011801 423 FVQQDKE 429 (477)
Q Consensus 423 ~~~~~~~ 429 (477)
++++++.
T Consensus 409 ~l~~~~~ 415 (420)
T d1vp4a_ 409 VVLEYGK 415 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHhhH
Confidence 9987653
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-48 Score=394.74 Aligned_cols=349 Identities=23% Similarity=0.356 Sum_probs=285.7
Q ss_pred Ccccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 37 PGGVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
..+||+|+.+++.++ ++.+.+.+.+.. .+...|++..|.++||++||+|+.+.+| +.+++++|+
T Consensus 27 g~~vi~l~~G~p~~~~p~~~~~al~~~~-------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 91 (389)
T d2gb3a1 27 GVRIHHLNIGQPDLKTPEVFFERIYENK-------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 91 (389)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHHHHTC-------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHhcC-------------CCCCCCCCCcCCHHHHHHHHHHHHHhcC--CCcccceEE
Confidence 457899999998775 455666666532 2456899999999999999999998877 668899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |..++.++.+..+ +..+.+.+...+ ..+++++
T Consensus 92 it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~ 163 (389)
T d2gb3a1 92 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEE-GFAIPQNLESFI------NERTKGI 163 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGG-TSCCCTTGGGGC------CTTEEEE
T ss_pred ecccccccccccccccccCCCeEEEeCCCCcccccccccc-Ccccccccccccc-ccchhhhhhhhc------ccCccEE
Confidence 9999999999999999999999999999999999998888 9999999887543 333334444332 3488999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+++... +.... ..+++++++|+||.+++||+
T Consensus 164 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~-~~~~~------~~~~~~v~~s~sK~~~~~Gl 236 (389)
T d2gb3a1 164 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA-SALSI------ESDKVVVIDSVSKKFSACGA 236 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC-CGGGS------CCTTEEEEEESTTTTTCGGG
T ss_pred EeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccc-ccccc------ccccccccccccccccCccc
Confidence 999999999999999999999999999999999999999988876543 33222 45788999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-eEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI-NCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi-~~~~~~~g 353 (477)
|+||++++++.+........ .....+.+.|.++..++... ++++++.++.++++++.+.+.|+++|+ .+..+++|
T Consensus 237 RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g 313 (389)
T d2gb3a1 237 RVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGA 313 (389)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBS
T ss_pred ceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccchhhhhhhhhhccccccCCCce
Confidence 99999998887776665443 33445667777777777654 456888899999999999999999975 46778999
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHh-----cCeEEeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVND-----VKLNVSPGSSFQCT---EPGWFRVCFANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~-----~gI~v~pg~~f~~~---~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~ 425 (477)
+|+|++++.. +..++.+.++++ .||.+.||+.|+.. +++|+|||++ .+++++++++++|+++++
T Consensus 314 ~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~-~~~~~l~~a~~~L~~~lk 385 (389)
T d2gb3a1 314 FYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLK 385 (389)
T ss_dssp SEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc-CCHHHHHHHHHHHHHHHH
Confidence 9999999842 122577777765 47899999988753 3679999998 489999999999999987
Q ss_pred h
Q 011801 426 Q 426 (477)
Q Consensus 426 ~ 426 (477)
+
T Consensus 386 ~ 386 (389)
T d2gb3a1 386 M 386 (389)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=4.6e-48 Score=392.72 Aligned_cols=361 Identities=19% Similarity=0.268 Sum_probs=286.7
Q ss_pred ccccccccc---ccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEE
Q 011801 39 GVIQLGLAE---NQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIV 115 (477)
Q Consensus 39 ~~i~l~~~~---n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~ 115 (477)
++|+|+.+. +.+|.+.+.+.+.+.-.. .-.+...|++..|+++||++||+|+++.+| ..+++++|+
T Consensus 30 ~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g--~~~~~~~I~ 98 (403)
T d1wsta1 30 DVISLAGGLPAPETFPVETIKKIAVEVLEE---------HADKALQYGTTKGFTPLRLALARWMEKRYD--IPMSKVEIM 98 (403)
T ss_dssp SCEECCCCCCCGGGSCHHHHHHHHHHHHHH---------SHHHHHSCCCSSCCHHHHHHHHHHHHHHHC--CCCTTCEEE
T ss_pred CcEECCCCCCCccccCHHHHHHHHHHHHHh---------CcccccCCCCCcCCHHHHHHHHHHHHHHhC--CCCChHHee
Confidence 589998864 234555566555442100 012356799999999999999999998887 457899999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH-hCCCeeE
Q 011801 116 MGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE-ASINIKG 194 (477)
Q Consensus 116 ~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~-~~~~~k~ 194 (477)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.++.+..+. +...+....+.... ......+
T Consensus 99 it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 174 (403)
T d1wsta1 99 TVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYY-DPEFISIPLDDKGM---RVDLLEEKLEELRKQGKRVKIV 174 (403)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETTEE---CHHHHHHHHHHHHHTTCCCCEE
T ss_pred ecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhc-cccceeEeecccCC---ccccccccchhhhhcccccccc
Confidence 9999999999999999999999999999999999998877 99999999876443 33444433333222 2334556
Q ss_pred EEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 195 LIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 195 vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
+++++||||||.+++.+++++|+++|++||++||+||+|.++.|++.+..++.... ..+++++++||||.++ ||
T Consensus 175 ~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~~-~G 248 (403)
T d1wsta1 175 YTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFD-----DYGRVIYLGTFSKILA-PG 248 (403)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGC-----SSSCEEEEEESTTTTC-GG
T ss_pred ccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccC-----CCCcEEEEccccceec-Cc
Confidence 77899999999999999999999999999999999999999989887766655432 4689999999999996 99
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEecC
Q 011801 275 FRVGIVYSFNDTVVNCGRKM-SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV---GINCLKS 350 (477)
Q Consensus 275 ~RvG~i~~~~~~i~~~~~~~-~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~---gi~~~~~ 350 (477)
+|+||++++++.+....... ......+...|.+.+.++..... +.++.+.++.+.++++.+.+.|.+. |+.+..|
T Consensus 249 ~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p 327 (403)
T d1wsta1 249 FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP 327 (403)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC
T ss_pred ccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC
Confidence 99999999666554443332 22344677888888888877665 7788899999999999999999875 7888899
Q ss_pred CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHhhhh
Q 011801 351 NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 351 ~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++|+|+|++++...+... +.+.++ +.||.|.||+.|+.. +++|+||||+..+++++++++++|+++++++.
T Consensus 328 ~gg~~~~~~~~~~~~~~~------~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 328 EGGMFVRVTLPEGIDTKL------MMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp SBSSEEEEECCTTCCTTT------THHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHH------HHHHHH-HCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999997654432 444444 569999999999763 46799999987799999999999999998643
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=7e-48 Score=384.90 Aligned_cols=352 Identities=18% Similarity=0.271 Sum_probs=282.4
Q ss_pred hccCCCCCCccchhhhhhcCCCCCCCCCCccccccccccccccH-HHHHHHHHhCCCCcccccccccccccccccCCCCC
Q 011801 9 TNNGHGEDSAYFDGWKAFDRNPFHPTQNPGGVIQLGLAENQLCF-DLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHG 87 (477)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G 87 (477)
++-.||.|-... -+.+. .+|.++|||+.++|++++ +.+.+.+.++ ...+..|++. |
T Consensus 2 ~~~~hgg~~~~~--~~~~g-------~~p~~~idls~~~np~~~p~~~~~a~~~~-------------~~~~~~Yp~~-~ 58 (355)
T d1lc5a_ 2 FNTAHGGNIREP--ATVLG-------ISPDQLLDFSANINPLGMPVSVKRALIDN-------------LDCIERYPDA-D 58 (355)
T ss_dssp CCCSSSCCCHHH--HHHHT-------SCGGGSEECSSCCCTTCCCHHHHHHHHHT-------------GGGGGSCCCT-T
T ss_pred CcCCCCCHHHHH--HHHhC-------CChhheEEccCCCCCCCCCHHHHHHHHHH-------------HHHhccCCCC-C
Confidence 355687765444 23333 337789999999999954 5567766664 2345679765 5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
.++||+++|++++ +++++|++|+|+++++.+++.++ .|+.++++.|.|+.|....... +.+++.++++.
T Consensus 59 ~~~Lr~aia~~~~--------v~~~~I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~~~~~~~~~-~~~~~~v~~~~ 127 (355)
T d1lc5a_ 59 YFHLHQALARHHQ--------VPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLRE 127 (355)
T ss_dssp CHHHHHHHHHHHT--------SCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCG
T ss_pred hHHHHHHHHHHhC--------CCHHHEEecccHHHHHHHHHhhh--ccccccccCCccceeccccccc-cccceeeeeec
Confidence 6999999999996 67899999999999999988877 3556677889998888777766 99999999987
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
+++|.++. ++++++ ..++|+|+++|||||||.+++.+++++|+++|+++++++|+||+|.++.+.......
T Consensus 128 ~~~~~~~~-~~~~~~------~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~-- 198 (355)
T d1lc5a_ 128 ADGWQLTD-AILEAL------TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP-- 198 (355)
T ss_dssp GGTTCCCT-THHHHC------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG--
T ss_pred cCCcccee-eeeecc------ccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccc--
Confidence 77888774 344443 348999999999999999999999999999999999999999999987666554332
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSK 327 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~ 327 (477)
... ..+++++++||||.+|+||+|+||++++++.+...+++....+.++.++|.++..+|.+.++ +.+.++
T Consensus 199 -~~~----~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~ 269 (355)
T d1lc5a_ 199 -ALK----DNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAW----QQATWH 269 (355)
T ss_dssp -GCT----TCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHH----HHHHHH
T ss_pred -ccc----ccccceeecccccccccccccccceeccchhhhHHHHhhcCCccccccccccccccccccch----hHHHHH
Confidence 222 45789999999999999999999999988877777777766677899999999999998654 566778
Q ss_pred HHHHHHHHHHHHHhhC-CCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEec
Q 011801 328 RLAKRHHNFTKGLEQV-GINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFA 406 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~-gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~ 406 (477)
.++++++++.+.|.+. |+.+. +.+|+|+|++++. +.. ++++.+. ++||.|+||+.|...+++|+||+++
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~--~~~------~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~ 339 (355)
T d1lc5a_ 270 WLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER--EDI------DLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR 339 (355)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC--TTC------CHHHHHH-TTTEECEECTTSTTCCTTEEEEECC
T ss_pred HHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC--CHH------HHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC
Confidence 8889999999999998 66655 4567899999884 111 4666665 5599999999998777899999997
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 011801 407 NMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 407 ~~~~e~l~~~l~~l~~~~ 424 (477)
+++++++++++|++++
T Consensus 340 --~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 340 --SAAQNERLLAALRNVL 355 (355)
T ss_dssp --CHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHhC
Confidence 7899999999999874
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.6e-48 Score=389.86 Aligned_cols=338 Identities=20% Similarity=0.359 Sum_probs=282.2
Q ss_pred ccccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEe
Q 011801 39 GVIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMG 117 (477)
Q Consensus 39 ~~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t 117 (477)
|+|+|+.+.+.++ ++.+.+.+++.- .....|++..|.++||++||++++ +++++|++|
T Consensus 26 ~~I~ls~g~p~~~~p~~i~~al~~~l-------------~~~~~Y~~~~G~~elr~aiA~~~~--------~~~~~Iiit 84 (368)
T d1v2da_ 26 GAVNLGQGFPSNPPPPFLLEAVRRAL-------------GRQDQYAPPAGLPALREALAEEFA--------VEPESVVVT 84 (368)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHT-------------TTSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCEEecCCCCCCCCCHHHHHHHHHHh-------------hcccCCCCCcCCHHHHHHHHhhcc--------cCCcceeec
Confidence 6899999876654 466777776631 234579999999999999999986 689999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC-CCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 118 GGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI-SNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 118 ~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~-~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
+|+++++.+++.+++++||.|++++|+|+.+...+... |.+++.++++. .+++.+|.+++++++++ +++.++
T Consensus 85 ~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 157 (368)
T d1v2da_ 85 SGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALL 157 (368)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEEE
T ss_pred cchHHHHHHHhhccccccccccccCCcchhhhhHHHhc-CCccceeccccccccccCCHHHHHHhhcc------CceEEE
Confidence 99999999999999999999999999999999888877 99998888753 35788999999998864 788999
Q ss_pred EeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCce
Q 011801 197 ITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFR 276 (477)
Q Consensus 197 i~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~R 276 (477)
++|||||||++++.+++++|+++|+++|+++|+||+|....+.... ...... ..++.+++.|+||.++++|+|
T Consensus 158 ~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~sk~~~~~G~R 230 (368)
T d1v2da_ 158 LNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP-RRLREF------APERTFTVGSAGKRLEATGYR 230 (368)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC-CCHHHH------CTTTEEEEEEHHHHTTCGGGC
T ss_pred EcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccc-cccccc------cccccceeecccccccccccc
Confidence 9999999999999999999999999999999999999876554443 332222 457788899999999999999
Q ss_pred EEEEEeCCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE
Q 011801 277 VGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF 355 (477)
Q Consensus 277 vG~i~~~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~ 355 (477)
+||++++++.+....+... ....++.+.|.+++.++..... .+++++.++.++++++.+.+.|++.|+++..+++|+|
T Consensus 231 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~ 309 (368)
T d1v2da_ 231 VGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYF 309 (368)
T ss_dssp CEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSE
T ss_pred cccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeE
Confidence 9999998776554433222 2344788899998888877655 5678888999999999999999999999999999999
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCT--EPGWFRVCFANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~--~~~~~Rl~~~~~~~e~l~~~l~~l~~~~ 424 (477)
+|++++.. + ..++++++||.++||+.|+.. +++|||||++. +++++++++++|++++
T Consensus 310 ~~~~l~~~-~----------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 310 LMAELPGW-D----------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368 (368)
T ss_dssp EEEECTTC-C----------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred EEEeCCcc-H----------HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence 99999842 1 123577889999999999764 46899999985 8899999999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1.4e-46 Score=381.74 Aligned_cols=349 Identities=14% Similarity=0.172 Sum_probs=276.0
Q ss_pred CCCCccccccccc----ccc--ccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 34 TQNPGGVIQLGLA----ENQ--LCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 34 ~~~~~~~i~l~~~----~n~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
+.||. .|+|+.+ ++. ..++.+.++...... + .....|++..|+++||+++|+++.+..+ .
T Consensus 25 d~~~~-~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~------~-----~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~ 90 (401)
T d7aata_ 25 DTNSK-KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAA------K-----KMDKEYLPIAGLADFTRASAELALGENS--E 90 (401)
T ss_dssp CCCTT-CEECCCCSCCCTTSCCCCCHHHHHHHHHHHH------T-----TCCCCCCCTTCCHHHHHHHHHHHHCTTC--H
T ss_pred CCCCC-cEEccCCCCcCCCCCCCCCHHHHHHHHHHhh------C-----CCCCCCCCCCCCHHHHHHHHHHHhccCC--c
Confidence 34554 5999987 232 334666665443210 0 1223699999999999999999987665 4
Q ss_pred ccCCCcEEEeCChH-----HHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 108 TFDPDRIVMGGGAT-----GANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 108 ~~~~~~i~~t~G~t-----~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
.+++++|+.+.|+. +++..+++++++|||.|++++|+|+.|...++.. |++++++++..+++|..+.+.+.+.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (401)
T d7aata_ 91 AFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHH
T ss_pred ccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHc-CCeEEEEeccccccccccHHHHHHHH
Confidence 56788887765533 4677778889999999999999999999998877 99999999988889999999988877
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH--HHhhhhccCCCCcE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV--AEVIQEMDCNRDLI 260 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~--~~~~~~~~~~~~~v 260 (477)
... ..++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++....+. ..... ..+++
T Consensus 170 ~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~----~~~~~ 242 (401)
T d7aata_ 170 SKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE----QGIDV 242 (401)
T ss_dssp TTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH----TTCCC
T ss_pred hcC---CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhh----hhccc
Confidence 542 3478899999999999999999999999999999999999999999988876432222 11222 44677
Q ss_pred EEEecCCcccCCCCceEEEEEeCCHHHHHHHH--------HhcccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHH
Q 011801 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR--------KMSSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRL 329 (477)
Q Consensus 261 iiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~--------~~~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l 329 (477)
+++.|+||.++++|+|+||++++.+.+....+ ....+...+.+.|.+++.++.++.+. ..++++.++++
T Consensus 243 ~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (401)
T d7aata_ 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRI 322 (401)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999997764433221 12334557889999999999987653 45667788899
Q ss_pred HHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 330 AKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 330 ~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
+++++.+.+.|++++ +.+..+++|+|+|+.++. +++++|++++||.+.|| .||+|
T Consensus 323 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~gV~~~pg----------~Ris~ 381 (401)
T d7aata_ 323 ISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISV 381 (401)
T ss_dssp HHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEG
T ss_pred HHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCCH-----------HHHHHHHHhCCEEECCC----------cEEEe
Confidence 999999999999986 455678999999998752 46788899999999988 39999
Q ss_pred ccCCHHHHHHHHHHHHHHHh
Q 011801 406 ANMDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 406 ~~~~~e~l~~~l~~l~~~~~ 425 (477)
+.+++++++.+.++|+++++
T Consensus 382 a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 382 AGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp GGCCTTTHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHhC
Confidence 98899999999999999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-44 Score=360.57 Aligned_cols=323 Identities=15% Similarity=0.286 Sum_probs=256.5
Q ss_pred CccccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEE
Q 011801 37 PGGVIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVM 116 (477)
Q Consensus 37 ~~~~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~ 116 (477)
..+.|.|+.|||+++++. +.. -+.+.+||+.. ..+||+++|++++ ++||+|++
T Consensus 26 ~~~~i~L~~ne~p~~~~~------~~~------------~~~l~rYPd~~-~~~Lr~~ia~~~g--------v~pe~I~i 78 (354)
T d1fg7a_ 26 GNGDVWLNANEYPTAVEF------QLT------------QQTLNRYPECQ-PKAVIENYAQYAG--------VKPEQVLV 78 (354)
T ss_dssp TTCSEECSSCCCSSCCCC------CCC------------CCCTTSCCCSS-CHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CCCCEEeeCCCCCCCCCH------HHH------------HHHHhcCCCCc-HHHHHHHHHHHhC--------CChHHeee
Confidence 356799999999886421 000 02356898875 4899999999997 68999999
Q ss_pred eCChHHHHHHHHHHhcCCCC-eEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEE
Q 011801 117 GGGATGANELIMFCLANPGD-AFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGL 195 (477)
Q Consensus 117 t~G~t~al~~i~~~l~~~Gd-~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~v 195 (477)
|+|+++++.++++++++||| .|+++.|+|+.|...++.. |.+++.++.+ ++|.+|+++++.++. ++++|
T Consensus 79 t~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~-g~~v~~~~~~--~~~~~d~~~l~~~~~-------~~~~v 148 (354)
T d1fg7a_ 79 SRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTL--DNWQLDLQGISDKLD-------GVKVV 148 (354)
T ss_dssp ESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCC--TTSCCCHHHHHTSCT-------TEEEE
T ss_pred ccCchHHHHHHHHHhhccccccccccccccccchhhhhcc-Cceeeccccc--cccccchhhhhhccc-------cccee
Confidence 99999999999999999998 5889999999999888887 9999988875 479999999887642 78999
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+++|||||||.++++++++.+.+.++ ++.++|+||+|.++.++... .. ... ..+++++++||||.||+||+
T Consensus 149 ~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~-~~---~~~----~~~~~iv~~S~SK~~~laGl 219 (354)
T d1fg7a_ 149 YVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASL-AG---WLA----EYPHLAILRTLSKAFALAGL 219 (354)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS-GG---GTT----TCTTEEEEEESSSTTCCGGG
T ss_pred eccCCCccceeEeeeccccccccccc-ccccccccccchhhcccccc-ch---hhc----ccccceEEeCCccccCCCcc
Confidence 99999999999999999999988876 56677888888875443222 11 222 46888999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCceE
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAGL 354 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g~ 354 (477)
|+||++++++. ...+.+....+.++++.|..+..++.+..+ .+.....+++.++++.+.+.|.+.+ +....+.+|+
T Consensus 220 RiGy~i~~~~~-i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~ 296 (354)
T d1fg7a_ 220 RCGFTLANEEV-INLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETN 296 (354)
T ss_dssp CCEEEEECHHH-HHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSS
T ss_pred ccccccccchh-hhhhhhhcCccchhhHHHHHHHHHHhhhcc--ccccccchhhhhHHHHHHHHHHhCCCcceeCCCCce
Confidence 99999996554 455566666666888888888888877653 3345556678888899999999985 4455667789
Q ss_pred EEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011801 355 FFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIA 421 (477)
Q Consensus 355 ~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~ 421 (477)
|+|++++.. .++++.+++ +||.|++|+.|. ..++|+||+++ +++++++++++|+
T Consensus 297 f~~~~~~~~---------~~~~~~L~~-~gIlvr~~~~~~-~~~~~lRisig--t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 297 YILARFKAS---------SAVFKSLWD-QGIILRDQNKQP-SLSGCLRITVG--TREESQRVIDALR 350 (354)
T ss_dssp EEEEEETTH---------HHHHHHHHH-TTEECEECTTST-TCTTEEEEECC--CHHHHHHHHHHHH
T ss_pred EEEEeCCCH---------HHHHHHHHH-CCcEEecCCCCC-CCCCEEEEEeC--CHHHHHHHHHHHh
Confidence 999998731 246666654 599999998875 34789999997 7889999988886
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-45 Score=370.38 Aligned_cols=350 Identities=14% Similarity=0.164 Sum_probs=271.9
Q ss_pred CCCCcccccccccc---cc--c-cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 34 TQNPGGVIQLGLAE---NQ--L-CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 34 ~~~~~~~i~l~~~~---n~--~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
+.+|+. |+|+++. +. . .++.+.++.+..... -.....|++..|+++||++||+++.+.++ .
T Consensus 23 d~~~~k-InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~----------~~~~~~Y~p~~G~~~lR~aia~~~~~~~~--~ 89 (397)
T d3tata_ 23 DPRSDK-VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ----------PHGASLYLPMEGLNCYRHAIAPLLFGADH--P 89 (397)
T ss_dssp SCCSSC-EECSCCSCCCTTSSCCCCHHHHHHHHHHTTS----------CCSSBCCCCTTCCHHHHHHHHHHHTCSSC--H
T ss_pred CCCCCc-EEccCCCCcCCCCCCCCcHHHHHHHHHHHhC----------cccCCCCCCcccCHHHHHHHHHHHhhccC--C
Confidence 345554 9999872 21 2 246666665432110 01235699999999999999999987766 4
Q ss_pred ccCCCcEEEeCChHHH----HHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 108 TFDPDRIVMGGGATGA----NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~a----l~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
.+++++|+++.|++++ +.+++..+.+|||.|++++|+|+.|...++.. |.++++++++.++++..+.+++.+.+.
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~-G~~~~~v~~~~~~~~~~~~~~~~~~~~ 168 (397)
T d3tata_ 90 VLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLK 168 (397)
T ss_dssp HHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTT-TCCCEECCCCCTTTSSCCHHHHHHHHT
T ss_pred cCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHc-CCEEEEEecchhhccccchHHHHHHhh
Confidence 5678899988776654 55666667899999999999999999999877 999999999888889999888887765
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHII 263 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv 263 (477)
+. ..++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+.....+......+ ..++++++
T Consensus 169 ~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~---~~~~~i~~ 242 (397)
T d3tata_ 169 TL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS---AGLPALVS 242 (397)
T ss_dssp TC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHT---TTCCCEEC
T ss_pred hc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhh---cCCceEEE
Confidence 32 3467888999999999999999999999999999999999999999988875432332222221 45778999
Q ss_pred ecCCcccCCCCceEEEEEeCCHHHHHHH------H--HhcccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHH
Q 011801 264 YSLSKDMGLPGFRVGIVYSFNDTVVNCG------R--KMSSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKR 332 (477)
Q Consensus 264 ~SlSK~~g~~G~RvG~i~~~~~~i~~~~------~--~~~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r 332 (477)
.|+||.++++|+|+||+++++..+.... . ....+..++.+.|.++..++.+.++. .++++..+++++++
T Consensus 243 ~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (397)
T d3tata_ 243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAM 322 (397)
T ss_dssp BCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764432211 1 12334456778999999999887653 34555667888889
Q ss_pred HHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC
Q 011801 333 HHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM 408 (477)
Q Consensus 333 ~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~ 408 (477)
++.+.+.|.+.+ +.+.++++|+|+|+.++. +++.+|++++||.+.||+ ||+|+++
T Consensus 323 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~~V~l~~g~----------Ri~~a~~ 381 (397)
T d3tata_ 323 RQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGL 381 (397)
T ss_dssp HHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCH-----------HHHHHHTTTTCEECCSSS----------CCBTTSC
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCceEEecCcCH-----------HHHHHHHHhCCEEeCCCC----------EEEeccC
Confidence 999999998764 566788999999998862 467888999999999873 9999988
Q ss_pred CHHHHHHHHHHHHHHH
Q 011801 409 DDDTLQVALNRIAAFV 424 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~ 424 (477)
++++++.+.++|++++
T Consensus 382 ~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 382 NTANVQRVAKAFAAVM 397 (397)
T ss_dssp CTTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-42 Score=342.31 Aligned_cols=316 Identities=17% Similarity=0.223 Sum_probs=245.2
Q ss_pred CCccccccccccccccH-HHHHHHH-HhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCc
Q 011801 36 NPGGVIQLGLAENQLCF-DLIKDWI-TKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDR 113 (477)
Q Consensus 36 ~~~~~i~l~~~~n~~~~-~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~ 113 (477)
...++|.|++|||++++ +.+.+.+ +.... ..+..| +..|.++||++||+|+++. + +++|+
T Consensus 17 ~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~------------~~~~~y-p~~g~~~Lr~aia~~~~~~-~----v~~d~ 78 (334)
T d2f8ja1 17 EKRDKTYLALNENPFPFPEDLVDEVFRRLNS------------DALRIY-YDSPDEELIEKILSYLDTD-F----LSKNN 78 (334)
T ss_dssp CCCCSEECSSCCCSSCCCHHHHHHHHHHCCT------------TGGGSC-CCSSCHHHHHHHHHHHTCS-S----CCGGG
T ss_pred cCCCceEEECCCCCCCCCHHHHHHHHHHhhc------------chhcCC-CCCCcHHHHHHHHHHhccc-C----CCcce
Confidence 35679999999999864 3444444 34321 123445 5569999999999999753 2 67899
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK 193 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k 193 (477)
|++|+|+++++.+++. +||+|++++|+|+.|...++.. |+++++++++.+.. .+ +. ...+++
T Consensus 79 I~it~G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~--~~-~~----------~~~~~~ 140 (334)
T d2f8ja1 79 VSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTKDLR--IP-EV----------NVGEGD 140 (334)
T ss_dssp EEEEEHHHHHHHHHHH----HSSEEEECSSCCHHHHHHHHHH-TCCEEECCCCTTSC--CC-CC----------CCCTTE
T ss_pred EEecCcchhHHHHHhh----hccccccccccccccccchhcc-CCcccccccccccc--cc-cc----------ccccce
Confidence 9999999999988765 4699999999999999988887 99999999876432 21 10 123788
Q ss_pred EEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCC
Q 011801 194 GLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLP 273 (477)
Q Consensus 194 ~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~ 273 (477)
+++++|||||||.+++++++.++ .++++++|+||+|.++.+.... . ... ..+++++++||||.+|++
T Consensus 141 ~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~-~----~~~----~~~~~i~~~S~SK~~~~~ 207 (334)
T d2f8ja1 141 VVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESYV-D----FLK----KYENLAVIRTFSKAFSLA 207 (334)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCCG-G----GGG----TCSSEEEEEESTTTSSCT
T ss_pred EEEecccccccceeecHHHhhcc----ccceeEEeecccchhhcccccc-c----ccc----cCceEEEEecCccccchh
Confidence 99999999999999998776653 4689999999999865333221 1 111 568899999999999999
Q ss_pred CceEEEEEeCCHHHHHHHHHhcccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCce
Q 011801 274 GFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAG 353 (477)
Q Consensus 274 G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g 353 (477)
|+|+||+++++ .+...+.+....+.++.++|.++..++.+.++ +++.++.++++++.+.+.|+++|+++.+++++
T Consensus 208 G~R~G~~~~~~-~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g~ 282 (334)
T d2f8ja1 208 AQRVGYVVASE-KFIDAYNRVRLPFNVSYVSQMFAKVALDHREI----FEERTKFIVEERERMKSALREMGYRITDSRGN 282 (334)
T ss_dssp TTCEEEEEECH-HHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHH----HHHHHHHHHHHHHHHHHHHHHHTCEECCCCSS
T ss_pred hhhhhhcccch-HHHHHHHHhhcccccchhhhhhcccccccccc----hhhHHHHHHHHHHHHHHHHHHCCCeECCCCce
Confidence 99999999954 55566666666677899999999999887554 66778889999999999999999999888765
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAF 423 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~ 423 (477)
|+|+.++.. +..++++.++ ++||.|+++ ++|+||||+ +.+++++++++|++|
T Consensus 283 -f~~~~~~~~-------~~~~~~~~L~-~~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 283 -FVFVFMEKE-------EKERLLEHLR-TKNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (334)
T ss_dssp -EEEEECCHH-------HHHHHHHHHH-HTTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHHC
T ss_pred -EEEEECCCC-------CHHHHHHHHH-HCCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhcC
Confidence 789988742 2235666665 459999763 579999998 788899999999874
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2.6e-43 Score=358.64 Aligned_cols=356 Identities=16% Similarity=0.189 Sum_probs=269.4
Q ss_pred CCCCccccccccc----cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 34 TQNPGGVIQLGLA----ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 34 ~~~~~~~i~l~~~----~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
+.||+ .|+|+++ ++.. .++.++++.+.... + -.....|++..|.++||+++++++.+..+.
T Consensus 26 d~~~~-kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~------~----~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~-- 92 (412)
T d1yaaa_ 26 DQRAT-KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHN------D----SSYNHEYLGITGLPSLTSNAAKIIFGTQSD-- 92 (412)
T ss_dssp CCCSS-CEECSSCCCBCTTSCBCCCHHHHHHHHHHHT------C----TTCCCCCCCTTCCHHHHHHHHHHHHCTTCH--
T ss_pred CCCCC-cEEeecCCCcCCCCCCCCcHHHHHHHHHHHh------C----cccCCCCCCCCCCHHHHHHHHHHHhcccCc--
Confidence 34565 4899987 3322 23556654433100 0 012347999999999999999999876552
Q ss_pred ccCCCcEEE--eCChHHHHHHHH--HHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 108 TFDPDRIVM--GGGATGANELIM--FCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 108 ~~~~~~i~~--t~G~t~al~~i~--~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
...++.++. +.|+..++..++ .++..|||.|++++|+|+.|...+... |.+++++++..++++.++.+.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (412)
T d1yaaa_ 93 ALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQ 171 (412)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred cccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHc-CCceecccccccccccccchhhhcccc
Confidence 233444433 344555544443 445789999999999999999998877 999999999878899999999888876
Q ss_pred HHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhh-hhccCCCCcEEE
Q 011801 184 RAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVI-QEMDCNRDLIHI 262 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~-~~~~~~~~~vii 262 (477)
.. ..+.+++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++....+..... .......+++++
T Consensus 172 ~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 248 (412)
T d1yaaa_ 172 KA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV 248 (412)
T ss_dssp HS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEE
T ss_pred cC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEE
Confidence 53 33667889999999999999999999999999999999999999999888764332221110 000114578999
Q ss_pred EecCCcccCCCCceEEEEEeCCHHHH------HH----HH--HhcccCCCchHHHHHHHHhcCChhhH---HHHHHHHHH
Q 011801 263 IYSLSKDMGLPGFRVGIVYSFNDTVV------NC----GR--KMSSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSK 327 (477)
Q Consensus 263 v~SlSK~~g~~G~RvG~i~~~~~~i~------~~----~~--~~~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~ 327 (477)
+.|+||.++++|+|+||++++++.+. .. .. ....+...+.+.|.++..++.++.+. .++++..++
T Consensus 249 ~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T d1yaaa_ 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99999999999999999999764321 11 11 12345567889999999999987643 456777889
Q ss_pred HHHHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEE
Q 011801 328 RLAKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRV 403 (477)
Q Consensus 328 ~l~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl 403 (477)
+++++++.+.+.|+++| +.+..+++|+|+|+.++. +++++|++++||.+.||+ ||
T Consensus 329 ~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~-----------e~~~~L~~e~~V~~~~g~----------Ri 387 (412)
T d1yaaa_ 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVASG----------RA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTS----------EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCH-----------HHHHHHHHhCCEEECCCC----------EE
Confidence 99999999999999886 456688999999987752 467888999999998873 99
Q ss_pred EeccCCHHHHHHHHHHHHHHHhhh
Q 011801 404 CFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 404 ~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
++++++++.++.+.++|+++++.+
T Consensus 388 s~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 388 SIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EeccCCHHHHHHHHHHHHHHHHhh
Confidence 999888899999999999998763
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=9.6e-43 Score=354.50 Aligned_cols=361 Identities=17% Similarity=0.196 Sum_probs=271.0
Q ss_pred chhhhhhcCCCCCCCCCCcccccccccc----c--cccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHH
Q 011801 20 FDGWKAFDRNPFHPTQNPGGVIQLGLAE----N--QLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQ 93 (477)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~----n--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ 93 (477)
|.-+..|..+ .||+ +|+|+++. + +..++.++++.+..... -.....|++..|+++||+
T Consensus 18 ~~l~~~~~~d-----~~~~-~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~----------~~~~~~Y~p~~G~p~lre 81 (412)
T d1ajsa_ 18 FKLIADFRED-----PDPR-KVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRT 81 (412)
T ss_dssp HHHHHHHHTC-----CCTT-CEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHH
T ss_pred HHHHHHHhcC-----CCCC-cEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC----------CCcCCCCCCCCCCHHHHH
Confidence 4444555444 3454 59999982 1 12345566654331000 012346999999999999
Q ss_pred HHHHHHhcccCCCCccCCCc--EEEeCChHHHHHHHHHHh-------cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 94 AVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCL-------ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 94 aia~~~~~~~g~~~~~~~~~--i~~t~G~t~al~~i~~~l-------~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
++++++.+..+ ..+++++ ++.|.|++.++..+..++ .+|||.|++++|+|+.|...++.. |++.++++
T Consensus 82 aia~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~-G~~~v~~~ 158 (412)
T d1ajsa_ 82 CASRLALGDDS--PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSY 158 (412)
T ss_dssp HHHHHHHCTTC--HHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEE
T ss_pred HHHHHHhccCC--cccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc-CCeEEEee
Confidence 99999987665 3344555 445666666666555443 699999999999999999999887 88766554
Q ss_pred -ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 165 -CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 165 -~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+...+.+.+|.+++++.+... ..+++++++++||||||.+++++++++|+++|++|+++||+||+|.++.|++...
T Consensus 159 ~~~~~~~~~~d~~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~ 235 (412)
T d1ajsa_ 159 RYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEK 235 (412)
T ss_dssp ECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHH
T ss_pred cccccccccccHHHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCccc
Confidence 445567888998888777643 4478889999999999999999999999999999999999999999988876432
Q ss_pred cc--HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHH--------HhcccCCCchHHHHHHHHhcC
Q 011801 244 TS--VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGR--------KMSSFGLVSSQTQYLLASMLS 313 (477)
Q Consensus 244 ~s--~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~--------~~~~~~~vs~~~q~~~~~~L~ 313 (477)
.+ ...... ..+.++++.|+||.++++|+|+||++++...+....+ ....+...+...|.++..++.
T Consensus 236 ~~~~~~~~~~----~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (412)
T d1ajsa_ 236 DAWAIRYFVS----EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLS 311 (412)
T ss_dssp HTHHHHHHHH----TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHH
T ss_pred chhhhhhhhh----hcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhc
Confidence 22 222222 4577888999999999999999999997654332211 123345577789999999998
Q ss_pred ChhhH---HHHHHHHHHHHHHHHHHHHHHHhhCCC----eEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 314 DDEFV---DNFLVETSKRLAKRHHNFTKGLEQVGI----NCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 314 ~~~~~---~~~~~~~~~~l~~r~~~l~~~L~~~gi----~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
+..+. ..+++..+++++++++.+.+.|++++. .+..+++|+|.|+.+.. +++.++++++||.
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~-----------~~v~~L~~e~gV~ 380 (412)
T d1ajsa_ 312 DPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIY 380 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCH-----------HHHHHHHHhCCEE
Confidence 86532 456777889999999999999999864 45578899999987752 3567888999999
Q ss_pred EeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 387 VSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
+.||+ ||+++.+++++++.+.++|++++++.
T Consensus 381 ~vpg~----------Ri~~ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 381 LLPSG----------RINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CCTTS----------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EeCCC----------eEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 99884 99999889999999999999999863
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-43 Score=356.42 Aligned_cols=352 Identities=17% Similarity=0.210 Sum_probs=265.1
Q ss_pred CCCCCCCccccccccc----cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccC
Q 011801 31 FHPTQNPGGVIQLGLA----ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRG 104 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~----~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g 104 (477)
|..+.+|+ .|+|+++ ++.. .++.+.++.++..+ -.....|++..|+++||+++|+|+.+.++
T Consensus 20 ~~~d~~~~-kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~-----------~~~~~~Y~p~~G~~~lR~aia~~~~~~~~ 87 (396)
T d2q7wa1 20 FRADERPG-KINLGIGVYKDETGKTPVLTSVKKAEQYLLE-----------NETTKNYLGIDGIPEFGRCTQELLFGKGS 87 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHH-----------HCCCCCCCCTTCCHHHHHHHHHHHHCTTC
T ss_pred HhccCCCC-cEEeeCCCccCCCCCCCCCHHHHHHHHHHhh-----------CCCCCCCCCCcCCHHHHHHHHHHHHhhcC
Confidence 33445565 4899987 2222 23556655443210 01234699999999999999999987665
Q ss_pred CCCccCCCc--EEEeCChHHHHHHHHHH--hcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHH
Q 011801 105 GRVTFDPDR--IVMGGGATGANELIMFC--LANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEA 180 (477)
Q Consensus 105 ~~~~~~~~~--i~~t~G~t~al~~i~~~--l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~ 180 (477)
....++. ++.|.|+++++.+++.. +.++||.|++++|+|+.|...+... |.+++.+++..++++..+...+++
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 164 (396)
T d2q7wa1 88 --ALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALIN 164 (396)
T ss_dssp --HHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHH
T ss_pred --CcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHc-CCeeEecccccccccccccchHHH
Confidence 2333443 44577777776665544 4789999999999999999988877 999999999888888888888777
Q ss_pred HHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcE
Q 011801 181 AYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260 (477)
Q Consensus 181 ~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~v 260 (477)
..... ..++++++++|||||||.+++.+++++|+++|++++++||+||+|+++.|+++...+......+ ..+.+
T Consensus 165 ~~~~~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~---~~~~~ 238 (396)
T d2q7wa1 165 SLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA---MHKEL 238 (396)
T ss_dssp HHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH---HCSCE
T ss_pred HHHHh---ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhh---hcccc
Confidence 65432 4477889999999999999999999999999999999999999999998876443333332221 34678
Q ss_pred EEEecCCcccCCCCceEEEEEeCCHHHHHHHHH--------hcccCCCchHHHHHHHHhcCChhh---HHHHHHHHHHHH
Q 011801 261 HIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK--------MSSFGLVSSQTQYLLASMLSDDEF---VDNFLVETSKRL 329 (477)
Q Consensus 261 iiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~--------~~~~~~vs~~~q~~~~~~L~~~~~---~~~~~~~~~~~l 329 (477)
+++.|+||.++++|+|+||+++++..+....+. ...+...+...|.++..++.++.. .++++++.++++
T Consensus 239 ~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (396)
T d2q7wa1 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI 318 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred cccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 889999999999999999999977544332211 233455677888888889887643 256777888999
Q ss_pred HHHHHHHHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEe
Q 011801 330 AKRHHNFTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCF 405 (477)
Q Consensus 330 ~~r~~~l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~ 405 (477)
+++++.+.+.|+++| +.+..+++|+|.|+.++. +++.+|++++||.+.||+ ||++
T Consensus 319 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~-----------e~~~~L~~e~gV~~~~g~----------Ri~~ 377 (396)
T d2q7wa1 319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVASG----------RVNV 377 (396)
T ss_dssp HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEG
T ss_pred HHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCH-----------HHHHHHHHhCCEEECCCC----------EEEe
Confidence 999999999999986 344577899999998762 467888999999998874 9999
Q ss_pred ccCCHHHHHHHHHHHHHHH
Q 011801 406 ANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 406 ~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+++++++.+.++|++++
T Consensus 378 a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 378 AGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp GGCCTTTHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhC
Confidence 9889999999999998874
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.3e-41 Score=343.99 Aligned_cols=346 Identities=15% Similarity=0.191 Sum_probs=263.1
Q ss_pred CCCcccccccccc------ccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCc
Q 011801 35 QNPGGVIQLGLAE------NQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVT 108 (477)
Q Consensus 35 ~~~~~~i~l~~~~------n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~ 108 (477)
.+|+ .|+|+++. ++..++.+.++++...+ -.....|++..|+++||+++++++.+..+. .
T Consensus 24 ~~~~-~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~-----------~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~--~ 89 (394)
T d2ay1a_ 24 PRQG-KIDLGVGVYKDATGHTPIMRAVHAAEQRMLE-----------TETTKTYAGLSGEPEFQKAMGELILGDGLK--S 89 (394)
T ss_dssp CCTT-CEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------HCCCCCCCCSSCCHHHHHHHHHHHHGGGCC--G
T ss_pred CCCC-CEEccCCCccCCCCCCCCCHHHHHHHHHHhh-----------CCCCCCCCCCCCCHHHHHHHHHHHhccccc--c
Confidence 3444 48999872 22334666666554211 012247999999999999999999866542 2
Q ss_pred cCCCcEEEeCChHHH--HHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGA--NELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 109 ~~~~~i~~t~G~t~a--l~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
..+ ..+++.|++++ +.+.+.++.++||.|++++|+|+.|...++.. |.+++++++..++++..+.+++++.....
T Consensus 90 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~- 166 (394)
T d2ay1a_ 90 ETT-ATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA- 166 (394)
T ss_dssp GGE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC-
T ss_pred ccc-cceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHc-CCEEEEecccchhcccccchhHHHHHhhc-
Confidence 233 34444444434 55666677899999999999999999999988 99999999987778888888887766542
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSL 266 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~Sl 266 (477)
..+.+++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++....+....... ...+++++.|+
T Consensus 167 --~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~---~~~~~~~~~s~ 241 (394)
T d2ay1a_ 167 --KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS---RIPEVLIAASC 241 (394)
T ss_dssp --CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH---HCSSEEEEEEC
T ss_pred --ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhh---hcccccccccc
Confidence 3356788889999999999999999999999999999999999999988876543333333221 23567889999
Q ss_pred CcccCCCCceEEEEEeCCHHHHHHHH--------HhcccCCCchHHHHHHHHhcCChhhH---HHHHHHHHHHHHHHHHH
Q 011801 267 SKDMGLPGFRVGIVYSFNDTVVNCGR--------KMSSFGLVSSQTQYLLASMLSDDEFV---DNFLVETSKRLAKRHHN 335 (477)
Q Consensus 267 SK~~g~~G~RvG~i~~~~~~i~~~~~--------~~~~~~~vs~~~q~~~~~~L~~~~~~---~~~~~~~~~~l~~r~~~ 335 (477)
||.++++|+|+||++++...+....+ ....+...+...|.++..++.+..+. .++++..+++++++++.
T Consensus 242 sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~ 321 (394)
T d2ay1a_ 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ 321 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654432221 11233446678888888888886542 45667778899999999
Q ss_pred HHHHHhhCC----CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHH
Q 011801 336 FTKGLEQVG----INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDD 411 (477)
Q Consensus 336 l~~~L~~~g----i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e 411 (477)
+.+.|+++| +.+..+++|+|+|+.++. +++++|++++||.+.||+ ||+|+.++++
T Consensus 322 l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------~~~~~L~~~~~V~~~~g~----------Ri~~a~l~~~ 380 (394)
T d2ay1a_ 322 LAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGDS----------RINIAGLNDN 380 (394)
T ss_dssp HHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGGCCTT
T ss_pred HHHHHHHhCCCCceeeECCCceeEEecCcCH-----------HHHHHHHHhCCEEecCCC----------EEEecCCCHH
Confidence 999998864 566788999999998762 467888899999999873 9999989999
Q ss_pred HHHHHHHHHHHH
Q 011801 412 TLQVALNRIAAF 423 (477)
Q Consensus 412 ~l~~~l~~l~~~ 423 (477)
+++.+.++|.++
T Consensus 381 ~i~~l~~ai~~v 392 (394)
T d2ay1a_ 381 TIPILARAIIEV 392 (394)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=1.6e-38 Score=322.08 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=222.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh--------cCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL--------ANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l--------~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
.++|+++|++++....+ ...+..+|++++|++++|++++.+| ..|||+|+++.|+|+.|...++.. |.+
T Consensus 102 ~~~L~~~i~~lh~~~gn--a~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~-~~~ 178 (425)
T d2hoxa1 102 SFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF-DKK 178 (425)
T ss_dssp CHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS-CBT
T ss_pred CHHHHHHHHHHHhhhCC--CCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc-CCC
Confidence 38999999999986644 3456678999999999999999999 468999999999999999888766 665
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
... |.+|.+.+++++.. +++++++||||||||.+.. +..+++.+|.||+|.+..|
T Consensus 179 ~~~--------~~~D~~~~~~~~~~------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f- 233 (425)
T d2hoxa1 179 GYV--------WAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHY- 233 (425)
T ss_dssp TEE--------EEEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTT-
T ss_pred CCc--------cCCCHHHHHhhCCC------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccc-
Confidence 443 44556666655433 7899999999999998742 2346899999999964323
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--cCCCchHHHHHHHHhcCChh-
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--FGLVSSQTQYLLASMLSDDE- 316 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--~~~vs~~~q~~~~~~L~~~~- 316 (477)
.++.. ..+++++++||||.||++|+|+||++++++.+.+.+.+... ...++.++|.++..+|.+..
T Consensus 234 ----~~~~~-------~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~ 302 (425)
T d2hoxa1 234 ----TPIKY-------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVA 302 (425)
T ss_dssp ----SCCCS-------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred ----cchhh-------hcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHH
Confidence 33221 34778999999999999999999999988888776665433 34588899999888886421
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHhhCCCeE---------------ecCCceEEEEeeccchhhccCchHHHH
Q 011801 317 -------FVDNFLVETSKRLAKRHHNFTKGLEQVGINC---------------LKSNAGLFFWMDLRHLLKEKTLEGEIA 374 (477)
Q Consensus 317 -------~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~---------------~~~~~g~~~~~~l~~~~~~~~~~~e~~ 374 (477)
...++++..++.+++|++.+.+.|++.+... ..+..+.|+|++..... . +
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~--~------~ 374 (425)
T d2hoxa1 303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE--D------K 374 (425)
T ss_dssp HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--G------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--H------H
Confidence 0124567778889999999999998875321 12333457888876321 1 2
Q ss_pred HHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 375 LWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 375 l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++..+++++||.++||+.|+. +++|+||+++. ++|+++++++||++++++
T Consensus 375 ~~~~lL~e~gI~v~pGs~FG~-~~~yvRisl~~-~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 375 DCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp SHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCEEEEechhcCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 355677888999999999974 57899999985 889999999999999975
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=2e-26 Score=228.58 Aligned_cols=300 Identities=18% Similarity=0.241 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCC
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDIS 168 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~ 168 (477)
..+++.+|+|++ .|.+++|+|+++|+..++.++++|||.|+++.|+|......++.. |++++.+|++..
T Consensus 50 ~~~~~~~A~~~g----------~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~-g~~v~~v~~~~~ 118 (364)
T d2e7ja1 50 DFIHNQLPKFLG----------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNIALVPKTDY 118 (364)
T ss_dssp HHHHTHHHHHTT----------SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEEEEECCCCT
T ss_pred HHHHHHHHHHhC----------cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhc-cceEEEeeeccc
Confidence 557888999886 478999999999999999999999999999999998877777766 999999999877
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
++|.+|++++++++++..+ ..++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+...+ + .+..+
T Consensus 119 ~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~---~-~~~~~ 190 (364)
T d2e7ja1 119 PDYAITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM---P-VSLKE 190 (364)
T ss_dssp TTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---C-CCHHH
T ss_pred cccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh---h-hcccc
Confidence 7899999999999987533 236788999999999999998 78899999999999999999973212 1 23333
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhccc--------C-CCchHHHHHHHHhcCChhhHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSF--------G-LVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~--------~-~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+ +..++++|++|.+|.+| ++||++++++.+.........+ + ........++.+.+. ...
T Consensus 191 ~--------g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~ 258 (364)
T d2e7ja1 191 I--------GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP---HVR 258 (364)
T ss_dssp H--------TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---HHH
T ss_pred c--------ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH---HHH
Confidence 2 23377889999999666 8999999766443322211111 1 111222222222221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEecC--CceEEEEeeccchhh--ccCchHHHHHHHHHHHhcCeEE-eCCCCCC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQVGINCLKS--NAGLFFWMDLRHLLK--EKTLEGEIALWRTIVNDVKLNV-SPGSSFQ 394 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~--~~g~~~~~~l~~~~~--~~~~~~e~~l~~~ll~~~gI~v-~pg~~f~ 394 (477)
++++...+.+ ++.+.+.+.|.+.|+.+... ......++..+.... ..... ...+....+...|+.. .+|
T Consensus 259 ~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~g---- 332 (364)
T d2e7ja1 259 ERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKG-GRFFLYRELKSRKIHGIKPG---- 332 (364)
T ss_dssp HHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSS-GGGHHHHHHHHTTEECSCTT----
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhc-cchHHHHHHHhcCCceecCC----
Confidence 2333333333 45567888888888876532 122233344432111 00000 0012233444556642 222
Q ss_pred CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 395 CTEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 395 ~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
....+|++.-..++++++.++++|+++++++
T Consensus 333 --~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 333 --LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp --CCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --CcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 2346787754468999999999999999874
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=5.3e-27 Score=233.78 Aligned_cols=283 Identities=11% Similarity=0.055 Sum_probs=192.1
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccchHHHHhhhCCcEEEEEec
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
+.++++++.+++++. ...+++++|+|+++|+..++.+|..++|.|+++ .|+|+.+...++.. |++++..
T Consensus 51 ~~~~l~~~~~~~~~~-------~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~-g~~~v~~-- 120 (366)
T d2aeua1 51 FAEKVNEYGLKHLGG-------DENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIV-NAKYFES-- 120 (366)
T ss_dssp HHHHHHHHHHHHHTC-------CTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE--
T ss_pred hHHHHHHHHHHHccC-------CCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHhc-CCeEECC--
Confidence 567888888888862 245789999999999999999986555545554 68999999988877 9986532
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+ |+++|++++.+ ++|+|++++|+||+ +++.+++++|+++|+++|+++|+||+|+..++......+
T Consensus 121 ~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~ 185 (366)
T d2aeua1 121 D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP 185 (366)
T ss_dssp S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC
T ss_pred C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCC
Confidence 1 68888887754 89999999999985 467889999999999999999999999876554332222
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-ccc-CCCchHHHHHHHHhcCChhh--HHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSF-GLVSSQTQYLLASMLSDDEF--VDNF 321 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~-~~vs~~~q~~~~~~L~~~~~--~~~~ 321 (477)
.... +..++++|+||.+ +|+|+||++++++.+ +.++.. ..+ ..++++.|+++...|+..+. ++++
T Consensus 186 ~~~~--------~~di~~~S~sK~~--~g~~~G~i~~~~~~i-~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~ 254 (366)
T d2aeua1 186 ALKL--------GADLVVTSTDKLM--EGPRGGLLAGKKELV-DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKA 254 (366)
T ss_dssp HHHH--------TCSEEEEETTSSS--SSCSCEEEEEEHHHH-HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHH
T ss_pred Hhhc--------CceEEEecccccc--cccceeEEEecHHHH-HHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHH
Confidence 2221 3347889999977 689999999966544 444433 223 34677888887777653221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-C--CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV-G--INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~-g--i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
.++.++......+.+....... + .....+.++.|+|......... ......+++..+++++||.+.||..|. .++
T Consensus 255 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~Ll~~~gV~~ip~~~~p-~~~ 332 (366)
T d2aeua1 255 FERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI-NIKKLIEIGFNLLKNYGIITITVAGMP-GAS 332 (366)
T ss_dssp HHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-HHHHHHHHHHHHHHHHCEECSTTSSSC-SSC
T ss_pred HHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-cccCHHHHHHHHHHhCCEEEEECCCCC-CCC
Confidence 2221111111222222222222 2 2233344556777766543221 223455788899999999999998884 467
Q ss_pred CEEEEEecc
Q 011801 399 GWFRVCFAN 407 (477)
Q Consensus 399 ~~~Rl~~~~ 407 (477)
+++|++|+.
T Consensus 333 ~~lRis~~~ 341 (366)
T d2aeua1 333 KSLRIDLTS 341 (366)
T ss_dssp CSEEEETTS
T ss_pred CEEEEeccc
Confidence 799999985
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.92 E-value=2.6e-24 Score=214.96 Aligned_cols=291 Identities=16% Similarity=0.218 Sum_probs=192.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHH----HhhhCCcEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVP 162 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~ 162 (477)
..++|+.+|++++ +++++|++|+|+|+++++++..+ .++||.|+++.+.|+..... .+.. |+++..
T Consensus 52 ~~~~r~~la~~~~--------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~ 122 (381)
T d1elua_ 52 IAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARF-GITYRF 122 (381)
T ss_dssp HHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHH-CCEEEE
T ss_pred HHHHHHHHHHHhC--------CCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccc-cccccc
Confidence 4568888888886 67899999999999999999987 68999999999999865443 3334 999999
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh----cCeEEEeccccccccc
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND----KNIHLVCDEIYAATVF 238 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~----~~~~lI~De~y~~~~~ 238 (477)
++.+.........+++++++ +.+++++++++|+||||.+++ +++|.++|++ +++++++|.+++.
T Consensus 123 v~~~~~~~~~~~~~~l~~~i------~~~t~~v~i~~~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~--- 190 (381)
T d1elua_ 123 FPVAATLNQGDAAAVLANHL------GPKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA--- 190 (381)
T ss_dssp ECCGGGSSSSCHHHHHHTTC------CTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB---
T ss_pred cccccccccchHHHHHHhhh------cccccccccccccccccccch---hhHHHHHHhhccccccccccccccccc---
Confidence 98764332222244444443 348999999999999999999 5556666666 4699999999973
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-----------------------c
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-----------------------S 295 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-----------------------~ 295 (477)
...+ ..+. ..+..+++.|++|.++ .+.++|+++..++......... .
T Consensus 191 g~~~-~~~~--------~~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (381)
T d1elua_ 191 GSLP-LDFS--------RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRF 260 (381)
T ss_dssp TTBC-CCTT--------TSCCSEEEEESSSTTC-CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGG
T ss_pred cccc-cccc--------cccccccccccccccc-ccchhhHHHhhHHHHHhcCccccccccccccccccccccccccccc
Confidence 2211 2211 2244578899999997 4456888888655432210000 0
Q ss_pred ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CCceEEEEeeccchhhccCchH
Q 011801 296 SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SNAGLFFWMDLRHLLKEKTLEG 371 (477)
Q Consensus 296 ~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~~g~~~~~~l~~~~~~~~~~~ 371 (477)
..++.+.....++.+.+..... ....+...++..++++++.++|+++ |+++.. +.++ ++++.++.....
T Consensus 261 ~~gt~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~~~----- 333 (381)
T d1elua_ 261 EVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPLGH----- 333 (381)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSSCH-----
T ss_pred ccccccchhhhhhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCCCH-----
Confidence 1122333344444444332111 1112344567777888999999997 777653 3444 556666532211
Q ss_pred HHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 372 EIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 372 e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
.++ ...+++.||.|+.. ..++++|+|++.. ++++++++++.|+++
T Consensus 334 -~~i-~~~L~~~gi~v~~~-----~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 334 -RAI-VQKLEEQRIYLRTI-----ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp -HHH-HHHHHHTTEECEEE-----TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred -HHH-HHHHHhCCcEEEec-----CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 123 34566779988642 3478999999865 899999999999864
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=5.2e-23 Score=206.31 Aligned_cols=296 Identities=17% Similarity=0.220 Sum_probs=197.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh----cCCCCeEEEcCCCccchHHHH---hhhCCcEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL----ANPGDAFLVPSPYYAAFDRDL---SWRTGVQI 160 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l----~~~Gd~vlv~~P~y~~~~~~~---~~~~g~~~ 160 (477)
+.+.|+.+|++++ +++++|++|+|+|+++..++.++ .++||.|++.++.|+...... +.. |+++
T Consensus 50 ~~~~R~~iA~~lg--------~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~-G~~v 120 (391)
T d1p3wa_ 50 VDIARNQIADLVG--------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEV 120 (391)
T ss_dssp HHHHHHHHHHHHT--------CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHc-CCEE
Confidence 3467889999987 67899999999999999888765 479999999999999875443 334 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
..++.+. ++.+|++++++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++++|.+++. ..
T Consensus 121 ~~v~~~~--~~~~d~~~~~~~i~~------~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~---g~ 186 (391)
T d1p3wa_ 121 TYLAPQR--NGIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSV---GK 186 (391)
T ss_dssp EEECCCT--TSCCCHHHHHHHCCT------TEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTB---TT
T ss_pred EEeCCCC--CCeEcHHHHHHhCCC------CcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeecccc---CC
Confidence 9999874 456899999998854 8999999999999999999 77889999999999999999973 21
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhc
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASML 312 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L 312 (477)
.+ ..+. ..+..+++.|.+|.+|.+| +|+++..++.+....... ...+..+.....++...+
T Consensus 187 ~~-~d~~--------~~~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~ 255 (391)
T d1p3wa_ 187 LP-IDLS--------QLKVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255 (391)
T ss_dssp BC-CCTT--------TSCCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHH
T ss_pred cc-ccch--------hccccccccccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhh
Confidence 11 2211 1233467789999998776 577777554322111000 111222322333333222
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEec---CC-ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLK---SN-AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~---~~-~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
.. ......+..+++++.++.+.++|.+.+..... .. ....+.+..+.. ..+ ++...+ .++.|+
T Consensus 256 ~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~l---~~i~v~ 322 (391)
T d1p3wa_ 256 RI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV------EGE-SLIMAL---KDLAVS 322 (391)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS------CHH-HHHHHT---TTEECB
T ss_pred hH---HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC------ChH-HHHHHh---CCCEEE
Confidence 21 12234444567777888888888877433221 11 111222333321 111 232222 478888
Q ss_pred CCCCCCCCC-----------------CCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhcC
Q 011801 389 PGSSFQCTE-----------------PGWFRVCFANM-DDDTLQVALNRIAAFVQQDKES 430 (477)
Q Consensus 389 pg~~f~~~~-----------------~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~~ 430 (477)
.|+.|.... +|++|||++.. |+++++.+++.|++++++.+..
T Consensus 323 ~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 323 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDL 382 (391)
T ss_dssp CCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 776653211 25799999875 8999999999999999887653
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=3e-23 Score=202.12 Aligned_cols=335 Identities=12% Similarity=0.113 Sum_probs=211.0
Q ss_pred ccccccccccccHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCC
Q 011801 40 VIQLGLAENQLCFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGG 119 (477)
Q Consensus 40 ~i~l~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G 119 (477)
+|||..+.-..|.+.+.+++.+... ....|.+.+...+|++.+|++++ .+++++++|
T Consensus 1 ~~~~~~~~~t~p~p~v~~A~~~a~~-------------g~~~yg~~p~~~~le~~lA~~~G----------~~~~~~~~s 57 (343)
T d1m6sa_ 1 MIDLRSDTVTKPTEEMRKAMAQAEV-------------GDDVYGEDPTINELERLAAETFG----------KEAALFVPS 57 (343)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCC-------------CCGGGTCCHHHHHHHHHHHHHTT----------CSEEEEESC
T ss_pred CcccccccCCCCCHHHHHHHHhhhc-------------CCcccCCCHHHHHHHHHHHHHHC----------CCeEEEeCC
Confidence 4677666545565667777655311 12357666678999999999986 357899999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEE
Q 011801 120 ATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLI 196 (477)
Q Consensus 120 ~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vi 196 (477)
+|+|+.+++.++..+||.+++..+.+..+.. ..... +..+.+++.+ .+..+++.+++.+....++..++..++
T Consensus 58 Gt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 133 (343)
T d1m6sa_ 58 GTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIA 133 (343)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCceeccccccceeeecccccccc-cceeeccccc---cCccCHHHHHHhhhhhhcccccccccc
Confidence 9999999999999999999999998765432 22222 5666666643 345789999988865444455666555
Q ss_pred Ee-CCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 197 IT-NPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 197 i~-nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
++ .++|+.|.+.+.+++++|.++|+++++++++|++|......... ........ .....+.+.+| +..|.
T Consensus 134 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~--~~~g~ 204 (343)
T d1m6sa_ 134 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG-VPVKEYAG------YADSVMFCLSK--GLCAP 204 (343)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC-CCHHHHHH------TCSEEEEESSS--TTCCS
T ss_pred cccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccc-cchhhhcc------ccccccccccc--ccccc
Confidence 54 56789999999999999999999999999999999754332222 12111211 12233333333 44566
Q ss_pred eEEEEEeCCHHHHHHHHHhccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEecCCce
Q 011801 276 RVGIVYSFNDTVVNCGRKMSSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-INCLKSNAG 353 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i~~~~~~~g 353 (477)
+.|+++...+.+.......... ...+.....++......... ....+...++...+.+.+.+.+ .....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (343)
T d1m6sa_ 205 VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM-----VDRLKEDHENARFLALKLKEIGYSVNPEDVKT 279 (343)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS-----STTHHHHHHHHHHHHHHHHHHTCBCCGGGCCS
T ss_pred ccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhhhhh-----HHHHHHHHHHHHHhhhHHHHhccCccCCCCCc
Confidence 7788888665544333222222 22222222222222111111 1111223334444555554443 233334455
Q ss_pred EEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 354 LFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 354 ~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+++|++++.... ...++.+.+.+ +||.++|. +++++|++++. .++|++|+++++|+++++++
T Consensus 280 ~~v~~~~~~~~~-----~a~~l~~~L~~-~Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 280 NMVILRTDNLKV-----NAHGFIEALRN-SGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp SEEEEECTTSSS-----CHHHHHHHHHH-HTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCcc-----cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 789998874211 11246666654 59999874 35689999965 48999999999999999874
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.4e-21 Score=193.33 Aligned_cols=293 Identities=11% Similarity=0.074 Sum_probs=204.5
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
-+.+|++.+|+|++ .+..+++++++.|+..++.++.+++|.|++..-.+......++.. +.+++.++.
T Consensus 84 ~~~~lE~~LA~~~g----------~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~-~~~~~~~~h- 151 (383)
T d1bs0a_ 84 VHQALEEELAEWLG----------YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH- 151 (383)
T ss_dssp HHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT-
T ss_pred HHHHHHHHHHHhcC----------CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccC-CCcceEecc-
Confidence 35899999999997 467888888899999999999999999999999998888888766 888887773
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.|.+++++.+++. ..+.+.|+++...+.+|.+.+ +.+|+++|++||+++++||+++..+++... ...
T Consensus 152 ------nd~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g-~G~ 218 (383)
T d1bs0a_ 152 ------NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS 218 (383)
T ss_dssp ------TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH
T ss_pred ------hHHHHHHHHhccc---CCCceEEEecCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcc-cch
Confidence 2788998887642 335567788888999999999 777788888999999999999966555432 333
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cc--cCC-CchHHHHHHHHhcCChhhHHHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SS--FGL-VSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~--~~~-vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
.+... ....+++.|++|.+|.+| |++.+..+ +.+.++.. .. +.. .++....++...+.-.. ....
T Consensus 219 ~~~~~-----~~~~~~~~t~~ka~g~~G---g~v~~~~~-~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~--~~~~ 287 (383)
T d1bs0a_ 219 CWLQK-----VKPELLVVTFGKGFGVSG---AAVLCSST-VADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEG 287 (383)
T ss_dssp HHHTT-----CCCSEEEEESSSTTSSCC---EEEEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHH
T ss_pred HHHcC-----Cccccccccccccccccc---cccccchh-HHHHHHhhchhhhhcccccchHHHHHHHHHHHHH--hhhh
Confidence 33322 233456789999999888 99888554 44444433 22 222 22222222222322110 1123
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWF 401 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~ 401 (477)
+..++++.++..++.+.|.+.|+.+.++.+. .+.+.+... +...++.+.|++ +||.+.+..... +.+...+
T Consensus 288 ~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~-Ii~v~~g~~------~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~l 359 (383)
T d1bs0a_ 288 DARREKLAALITRFRAGVQDLPFTLADSCSA-IQPLIVGDN------SRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARL 359 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCEECSCCSS-BCCEEEESH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCC-EEEEEECCH------HHHHHHHHHHHH-CCceEEEEcCCCCCCCCceE
Confidence 4566778888899999999999887665543 333333321 122356666664 599998753221 2344579
Q ss_pred EEEecc-CCHHHHHHHHHHHHHH
Q 011801 402 RVCFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 402 Rl~~~~-~~~e~l~~~l~~l~~~ 423 (477)
|+++.. .++|+++.+++.|+.+
T Consensus 360 Ri~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 360 RLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp CCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhc
Confidence 999966 4999999999998764
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.1e-21 Score=194.90 Aligned_cols=300 Identities=15% Similarity=0.092 Sum_probs=210.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccC
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDI 167 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~ 167 (477)
+.+|.+.+|+|++ .+.+++++++++|+..++.++.+++|.|++..-.|......+... +.++..++.
T Consensus 92 ~~~lE~~lA~~~g----------~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~-~a~~~~~~~-- 158 (401)
T d1fc4a_ 92 HKELEQKLAAFLG----------MEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT--
T ss_pred HHHHHHHHHHhhc----------CCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccccc-CceEEEEcC--
Confidence 4789999999986 578999999999999999999999999999999998888777766 888877663
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHH
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVA 247 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~ 247 (477)
.|.+++++.++...+.+....+|++..-.+..|...+ |+++.++|++||+++|+||+++..+++... ....
T Consensus 159 -----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G-~G~~ 229 (401)
T d1fc4a_ 159 -----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGSH 229 (401)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCHH
T ss_pred -----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCC-Cccc
Confidence 3678888888777666666666666655677888888 888888999999999999999977666543 2333
Q ss_pred HhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-ccc--C-CCchHHHHHHHHhcCChhhHHHHHH
Q 011801 248 EVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SSF--G-LVSSQTQYLLASMLSDDEFVDNFLV 323 (477)
Q Consensus 248 ~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~~--~-~vs~~~q~~~~~~L~~~~~~~~~~~ 323 (477)
+... ...+..++++||||.+| |...|++.++. .+.+.++.. .++ . ..++....++...+... ....
T Consensus 230 ~~~~---~~~~~dii~~tl~Ka~g--g~~Gg~v~g~~-~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~----~~~~ 299 (401)
T d1fc4a_ 230 EYCD---VMGRVDIITGTLGKALG--GASGGYTAARK-EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV----EAGS 299 (401)
T ss_dssp HHTT---CTTCCSEEEEESSSTTC--SSSCEEEEECH-HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH----HTCH
T ss_pred hhcc---CCCCCeEEEeecccccc--cCCcccccCCH-HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc----ccCH
Confidence 3322 13355688999999994 33348888854 445544322 222 1 23333333333333221 1124
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCCCCEEE
Q 011801 324 ETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTEPGWFR 402 (477)
Q Consensus 324 ~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~~~~~R 402 (477)
+.++++.+..+.+.+.+.+.|+.+..++.. .+.+.+.... ...++++.|+ +.||.+.+-..-. +.+...+|
T Consensus 300 ~~~~~l~~~~~~~~~~l~~~g~~~~~~~~p-Iv~v~~~~~~------~a~~~~~~L~-~~Gi~v~~i~~PtVp~g~~~lR 371 (401)
T d1fc4a_ 300 ELRDRLWANARQFREQMSAAGFTLAGADHA-IIPVMLGDAV------VAQKFARELQ-KEGIYVTGFFYPVVPKGQARIR 371 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBCCSSSS-EEEEEEECHH------HHHHHHHHHH-HTTEECCEECTTSSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHhhhcccCCccCCCCCC-EEEEEECCHH------HHHHHHHHHH-HCCceEEeECCCCCCCCCceEE
Confidence 567788899999999999999887766554 4434444221 1224666665 4599987643211 22345699
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHhhh
Q 011801 403 VCFAN-MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 403 l~~~~-~~~e~l~~~l~~l~~~~~~~ 427 (477)
+++.. .|+|+++++++.|+++.++.
T Consensus 372 i~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 372 TQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 99965 59999999999999998874
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.88 E-value=4.9e-21 Score=190.67 Aligned_cols=293 Identities=13% Similarity=0.070 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
+.+|++.+|+|++ .+..++.+.+..|+..++.+| .++||.|+.+.-.+......++.. +.++..++.
T Consensus 92 h~~LE~~lA~~~g----------~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls-~a~~~~f~H 160 (396)
T d2bwna1 92 HRRLEAEIAGLHQ----------KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRH 160 (396)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECT
T ss_pred HHHHHHHHHHHhC----------CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhcc-ccCceEeec
Confidence 4799999999997 467778888888999998888 468898888888888888778776 888887763
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+ |.+++++.++...+ .+.+.|++..-.+.+|.+.+ +.+|+++|++||+++++||+++-.+++... ..
T Consensus 161 n-------d~~~l~~l~~~~~~--~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G-~G 227 (396)
T d2bwna1 161 N-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AG 227 (396)
T ss_dssp T-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CC
T ss_pred c-------hHHHhhhHHhhhcc--cCceeEEEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecccc-cc
Confidence 2 57778777664322 24455666666788999999 888888999999999999999966655433 33
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-cc--cCC-CchHHHHHHHH---hcCChhhH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-SS--FGL-VSSQTQYLLAS---MLSDDEFV 318 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~~--~~~-vs~~~q~~~~~---~L~~~~~~ 318 (477)
+.+... ...+..++++||||+||..| |+|.++++ +++.++.. .+ |.+ .++....++.+ ++...+
T Consensus 228 ~~~~~~---~~~~~di~~gTlsKa~g~~G---g~v~~~~~-~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~-- 298 (396)
T d2bwna1 228 VAERDG---LMHRIDIFNGTLAKAYGVFG---GYIAASAR-MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAE-- 298 (396)
T ss_dssp HHHHHT---CGGGCSEEEEESSSTTCSCC---EEEEECHH-HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHH--
T ss_pred chhhcC---Cceeeeeeeecccccccccc---cccchhHH-HHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcch--
Confidence 333321 12345688999999999988 99888554 55554433 22 222 22222222222 222322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCC-CCC
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ-CTE 397 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~-~~~ 397 (477)
.++.++.+..+.+++.+.|.+.|+.+..+.+ ..+-+.+... ....++++.+++++||.+.+..... +.+
T Consensus 299 ---~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~s-pIvpv~ig~~------~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g 368 (396)
T d2bwna1 299 ---GQKLRDAQQMHAKVLKMRLKALGMPIIDHGS-HIVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRG 368 (396)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTCCBCCCSS-SCEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHHHhCCEEEEEECCCcCCCC
Confidence 2445667777888899999998987765544 3343444321 2223577788888899987654322 223
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011801 398 PGWFRVCFAN-MDDDTLQVALNRIAAF 423 (477)
Q Consensus 398 ~~~~Rl~~~~-~~~e~l~~~l~~l~~~ 423 (477)
...+|+++.. .++++++.++++|+++
T Consensus 369 ~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 369 TERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp CCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 4579999965 4999999999999875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1e-19 Score=183.02 Aligned_cols=293 Identities=16% Similarity=0.159 Sum_probs=201.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCccchHH----HHhhhCCcE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC----LANPGDAFLVPSPYYAAFDR----DLSWRTGVQ 159 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~----l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~ 159 (477)
+.+.|+.+|++++. .++++|++|.|+|+++..++.. ...+||.|++..-.|+.... .++.. |++
T Consensus 68 ~e~~R~~ia~~l~~-------~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~-g~~ 139 (405)
T d1jf9a_ 68 MENVRKRASLFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAE 139 (405)
T ss_dssp HHHHHHHHHHHTTC-------SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCE
T ss_pred HHHHHHHHHHHcCC-------CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHc-CcE
Confidence 46788899999862 2468999999999999988875 35889999999999987543 33444 999
Q ss_pred EEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccC
Q 011801 160 IVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFS 239 (477)
Q Consensus 160 ~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~ 239 (477)
+..+|++.+ ..++++.+++++.. ++++|.++..+|.||.++| +++|.++|+++|+++++|.+++. .
T Consensus 140 v~~~~~~~~--g~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~---g 205 (405)
T d1jf9a_ 140 LRVIPLNPD--GTLQLETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV---M 205 (405)
T ss_dssp EEEECBCTT--SCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT---T
T ss_pred EEEECCCCC--CcCCHHHHHHhccC------CcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec---c
Confidence 999998754 36788888877654 8999999999999999999 88889999999999999999973 2
Q ss_pred CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------------------------c
Q 011801 240 SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------------------S 295 (477)
Q Consensus 240 ~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------------------------~ 295 (477)
. -...+... +..+++.|+.|.+|.+| +|+++..++.+.. .... -
T Consensus 206 ~-~~id~~~~--------~~D~~~~s~hK~~Gp~G--~g~l~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 273 (405)
T d1jf9a_ 206 H-HPVDVQAL--------DCDFYVFSGHKLYGPTG--IGILYVKEALLQE-MPPWEGGGSMIATVSLSEGTTWTKAPWRF 273 (405)
T ss_dssp T-SCCCHHHH--------TCSEEEEEGGGTTSCSS--CEEEEECHHHHTT-CCCSSCSSSSEEECCTTTCCEECCTTGGG
T ss_pred c-cccchhhc--------CCceeeccccccccCCC--ceeeeechhhhcc-cCcccccccccCccccccccccccchhhh
Confidence 1 12344333 33478899999998666 7888886543321 1100 0
Q ss_pred ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-eEecC--CceEEEEeeccchhhccCchHH
Q 011801 296 SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGI-NCLKS--NAGLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 296 ~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi-~~~~~--~~g~~~~~~l~~~~~~~~~~~e 372 (477)
..++.+.....++...++-.. +--++...++.....+.+.+.++..+. ....+ ..+ .+.+.++... .
T Consensus 274 e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~-ivsf~~~~~~------~- 343 (405)
T d1jf9a_ 274 EAGTPNTGGIIGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKHH------A- 343 (405)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS-EEEEEETTCC------H-
T ss_pred cCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCc-EEEEEcCCCC------H-
Confidence 013344444444444443111 111334444455555667777777753 33322 233 4445665321 1
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHHHHHHh
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
+.....+++.||.++.|+.|.. ..++++|||++.. +++|++.+++.|+++++
T Consensus 344 -~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 344 -YDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp -HHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1234456788999999887632 2368999999876 89999999999998875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.84 E-value=5.5e-19 Score=179.82 Aligned_cols=325 Identities=14% Similarity=0.172 Sum_probs=214.5
Q ss_pred cccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE
Q 011801 80 AIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ 159 (477)
Q Consensus 80 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~ 159 (477)
..|.......+|.+.+|++++ .+.++++++++.|+.++++++++|||.|+.... |......+... |..
T Consensus 69 d~Y~~dpt~~~lE~~~a~l~G----------~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~-g~~ 136 (456)
T d1c7ga_ 69 EAYAGSENFYHLEKTVKELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQEKN-GAT 136 (456)
T ss_dssp CCSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHHHT-TEE
T ss_pred hhccCCchHHHHHHHHHHHhC----------CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHHHc-Cce
Confidence 358877778899999999997 467899999999999999999999999887665 33333334444 887
Q ss_pred EEEEeccC--------CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHhcCeEEEec
Q 011801 160 IVPVHCDI--------SNNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFINDKNIHLVCD 230 (477)
Q Consensus 160 ~~~v~~~~--------~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~~~~~lI~D 230 (477)
.+.+..+. ...+.+|+++|++++++..+ .++..+++.+|+|+. |.+++.+++++|.++|++||+.+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D 214 (456)
T d1c7ga_ 137 FVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYD 214 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred eeeccccccccccccCCccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEE
Confidence 77665431 12457899999999986532 256788999999985 68899999999999999999999999
Q ss_pred cccccc--cc-----CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-------c
Q 011801 231 EIYAAT--VF-----SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS-------S 296 (477)
Q Consensus 231 e~y~~~--~~-----~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~-------~ 296 (477)
+++... .| .+-...++.++..+.. ....++..|++|.++.++ -|+++++++.+.+.++.+. .
T Consensus 215 ~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~--~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~ 290 (456)
T d1c7ga_ 215 ATRCVENAYFIKEQEAGYENVSIKDIVHEMF--SYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPS 290 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH--TTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTT
T ss_pred cchhhcchhhhcccccccCCCChhhhccccc--cccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcc
Confidence 997421 01 1112234444433210 112255679999998553 3888888877766554321 1
Q ss_pred cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh---hccCchHHH
Q 011801 297 FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL---KEKTLEGEI 373 (477)
Q Consensus 297 ~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~---~~~~~~~e~ 373 (477)
++..+.....+++..+....- .+++++ + .++.++|.+.|.+.|+.+..+.++..++++..... ....+.. .
T Consensus 291 ~g~~~~~~~~a~a~~l~e~~~-~~~l~~---r-~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~-~ 364 (456)
T d1c7ga_ 291 YGGLAGRDMEAMAIGLREAMQ-YEYIEH---R-VKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPA-Q 364 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHTC-HHHHHH---H-HHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHH-H
T ss_pred cchhhHHHHHHHHHHHHHhcC-HHHHHH---H-HHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccH-H
Confidence 222333322232222221100 122222 2 34457888999999999888888888888755332 1222222 2
Q ss_pred HHHHHHHHhcCeEEeCCCCCC--C---------CCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhhh
Q 011801 374 ALWRTIVNDVKLNVSPGSSFQ--C---------TEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 374 ~l~~~ll~~~gI~v~pg~~f~--~---------~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~~ 428 (477)
++...++.+.||...+...+. . .....+|+++.. .|++++|.+++.|++++++.+
T Consensus 365 ~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~ 432 (456)
T d1c7ga_ 365 SLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhh
Confidence 456666677799754422211 0 112469999863 389999999999999997633
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=6.2e-20 Score=176.25 Aligned_cols=307 Identities=14% Similarity=0.139 Sum_probs=190.5
Q ss_pred ccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh-hCC
Q 011801 79 IAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW-RTG 157 (477)
Q Consensus 79 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~-~~g 157 (477)
...|++..+..++|+.||++++ .++++|++|+|+|+|+.+++..+..+++.++++.+.+..+...... ..+
T Consensus 28 ~~~y~~~~~~~~lr~~ia~~~g--------~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (340)
T d1svva_ 28 HAGYGQDSHCAKAARLIGELLE--------RPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATG 99 (340)
T ss_dssp CCSTTCSHHHHHHHHHHHHHHT--------CTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhC--------CCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccccccc
Confidence 3457666667899999999997 5678999999999999999999999999999999887655432211 113
Q ss_pred cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc
Q 011801 158 VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV 237 (477)
Q Consensus 158 ~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~ 237 (477)
.....+... ....+.+...++.............++++.+.|++|.+...+++..+.+.|.+++.++++|++|....
T Consensus 100 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~ 176 (340)
T d1svva_ 100 HKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASA 176 (340)
T ss_dssp CCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHH
T ss_pred eeeeecccc---cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeee
Confidence 333333322 12234444444443322222234445556566778888899999999999999999999999997543
Q ss_pred cCCC-CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHH--HHhcccC-CCchHHHHHHHHhcC
Q 011801 238 FSSP-KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCG--RKMSSFG-LVSSQTQYLLASMLS 313 (477)
Q Consensus 238 ~~~~-~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~--~~~~~~~-~vs~~~q~~~~~~L~ 313 (477)
.... ...+...... ...+...+.+|.. .+.+.++............ ....... ........++..++.
T Consensus 177 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~ 248 (340)
T d1svva_ 177 LSSPVNDLTLADIAR------LTDMFYIGATKAG--GMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMK 248 (340)
T ss_dssp HTSTTCCCCHHHHHH------HCSEEEEECTTTT--CSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS
T ss_pred ecccccccccccccc------cceeeecCCcccc--ccccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhh
Confidence 3322 2222222211 2234444555544 4444566555433322111 1111121 122334445555666
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCC
Q 011801 314 DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSF 393 (477)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f 393 (477)
...+ ....++...+++++.+.|++.|+++..|..+++++++++. +....++++..+...+..
T Consensus 249 ~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~-- 310 (340)
T d1svva_ 249 DNLF-----FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL-- 310 (340)
T ss_dssp TTHH-----HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE--
T ss_pred hhHH-----HHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCCH-----------HHHHHHHHhhhhhccccc--
Confidence 5443 3344566677788889999999998776667899888874 233444444222222221
Q ss_pred CCCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 394 QCTEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 394 ~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
..+++.+|+|++.. |++++|+++++|+++
T Consensus 311 -~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 311 -KDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -TTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -CCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 23468999998754 999999999999863
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.1e-19 Score=180.79 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=185.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCccchHHHH---hhhCCcEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFC----LANPGDAFLVPSPYYAAFDRDL---SWRTGVQI 160 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~----l~~~Gd~vlv~~P~y~~~~~~~---~~~~g~~~ 160 (477)
+.+.|+++|++++ +++++|++++|+|+++..++.+ ...+|+.|++....|+.+.... +.. |+++
T Consensus 46 ~~~aR~~ia~l~~--------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-g~~v 116 (376)
T d1eg5a_ 46 MEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKV 116 (376)
T ss_dssp HHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhc-CCEE
Confidence 3466889999987 6899999999999999998864 3577888888888887665433 444 9999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
+.+|++. ++.+|++++++++.+ ++++|++++++|+||...+.+++.+++. +.+.++++++|.+++. +.
T Consensus 117 ~~vp~~~--~~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q~~---g~ 184 (376)
T d1eg5a_ 117 KYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVK-KKNKETLVHVDAVQTI---GK 184 (376)
T ss_dssp EECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHH-HHCTTCEEEEECTTTT---TT
T ss_pred EEEcCCC--CCeECHHHHHHhcCC------CceEEEEECCccccceeeeehhhhhhhh-hcccCceeEEEeeecc---cc
Confidence 9999875 457999999999865 8999999999999999999555555443 2345899999999863 22
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-c------c--cCCCchHHHHHHHHh
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-S------S--FGLVSSQTQYLLASM 311 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-~------~--~~~vs~~~q~~~~~~ 311 (477)
-+ ..+. ..+..++++|++|.+|.+|..+.|+ .++.. .+.. . . .+..+......+...
T Consensus 185 ~~-~d~~--------~~~~D~~~~s~~K~~gp~G~~~l~~--~~~~~---~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T d1eg5a_ 185 IP-FSLE--------KLEVDYASFSAHKFHGPKGVGITYI--RKGVP---IRPLIHGGGQERGLRSGTQNVPGIVGAARA 250 (376)
T ss_dssp SC-CCCT--------TTCCSEEEEEGGGGTSCTTCEEEEE--CTTSC---CCCSBCSSCTTTTTBCSCCCHHHHHHHHHH
T ss_pred cc-cccc--------ccCccceecccceeecCCCceeEEe--ccCcc---cCCcccCCCCcccccCCcccchhhhhHHHH
Confidence 11 2211 2245588999999999888766664 22210 1110 0 0 111223333333322
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc---eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA---GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~---g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
.... .................+.++|...+........ ....-+.++.. .. +.....++++||.++
T Consensus 251 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~L~~~gI~vr 319 (376)
T d1eg5a_ 251 MEIA---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI------RG--STLQNLLSGYGIYVS 319 (376)
T ss_dssp HHHH---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC------CH--HHHHHHHHHTTEECB
T ss_pred hhcc---ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCC------CH--HHHHHHHhhCCeEEe
Confidence 2211 1112233344445556677777765433332111 11222333321 11 233445778899999
Q ss_pred CCCCCCCCC-----------------CCEEEEEeccC-CHHHHHHHHHHHHHHHh
Q 011801 389 PGSSFQCTE-----------------PGWFRVCFANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 389 pg~~f~~~~-----------------~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
+|..|.... ++++|+|++.. |++|+|.+++.|++++.
T Consensus 320 ~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 987664221 24799999865 89999999999999986
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=2.4e-19 Score=173.78 Aligned_cols=332 Identities=11% Similarity=0.109 Sum_probs=204.4
Q ss_pred cccccccccccc-HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeC
Q 011801 40 VIQLGLAENQLC-FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGG 118 (477)
Q Consensus 40 ~i~l~~~~n~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~ 118 (477)
.++|.. +|..+ .|.+.+++.+... .....|.......++|+.+|++++. +..+++|+
T Consensus 4 ~~~f~s-~n~~g~~P~v~~A~~~a~~------------~~~~~~~~~~~~~~l~~~la~~~g~---------~~~v~f~~ 61 (345)
T d1v72a1 4 ALGFSS-DNIAGASPEVAQALVKHSS------------GQAGPYGTDELTAQVKRKFCEIFER---------DVEVFLVP 61 (345)
T ss_dssp CCBCSC-GGGCCCCHHHHHHHHHTTS------------SCCCSTTCSHHHHHHHHHHHHHHTS---------CCEEEEES
T ss_pred CcCcCC-CCCCCCCHHHHHHHHHHhc------------cCccccCCCHHHHHHHHHHHHHHCC---------CcEEEECC
Confidence 366663 56653 3556666655311 2334565555678999999999872 45799999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH--HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCee-EE
Q 011801 119 GATGANELIMFCLANPGDAFLVPSPYYAAFDRD--LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIK-GL 195 (477)
Q Consensus 119 G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k-~v 195 (477)
|+|+|+..++.++..+++.+++....+...... .....+..+.+++.+ .+..++++.++..+.+.......+. .+
T Consensus 62 sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 139 (345)
T d1v72a1 62 TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPAC 139 (345)
T ss_dssp CHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred chHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhcCccccccccc--ccccccHHHhhhhhccccccccccccee
Confidence 999999999999999998888877765443322 222236666665543 3556789999988865322222333 34
Q ss_pred EEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCc
Q 011801 196 IITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGF 275 (477)
Q Consensus 196 ii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~ 275 (477)
+..++.|+.|...+.++++++.++|+++|+++++|+++.+....... .+...... ..+......+..|..+ .+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~-~~~ 213 (345)
T d1v72a1 140 VSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG-CSPAEMTW----KAGVDALSFGATKNGV-LAA 213 (345)
T ss_dssp EEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT-CCTTTTTG----GGTCCEEEECCGGGTC-SSC
T ss_pred eeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccc-cCHHHhhc----cccccccccCcccccc-ccc
Confidence 56677899999999999999999999999999999999753222111 11111100 1233344445555443 222
Q ss_pred eEEEEEeCCHHHHHHHHHh-cccCCCch--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCC
Q 011801 276 RVGIVYSFNDTVVNCGRKM-SSFGLVSS--QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSN 351 (477)
Q Consensus 276 RvG~i~~~~~~i~~~~~~~-~~~~~vs~--~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~ 351 (477)
+. .+.............. ......+. ....+....+.+..+ .+...+..++.+.+.+.+.++ |+.+..+.
T Consensus 214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~ 287 (345)
T d1v72a1 214 EA-IVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLGGVEVLGGT 287 (345)
T ss_dssp EE-EEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCTTEEEESCC
T ss_pred cc-cccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhh-----hhhccchhhHHHHHHHHHHhcCCcEeccCC
Confidence 22 2333232222222221 11222222 222333344444332 333444556667777888887 77777777
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAF 423 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~ 423 (477)
.+++++++++. +..+.++ +.||.|.++. .+++.+|++++.. |+|++|.++++|+++
T Consensus 288 ~~niv~~~~~~-----------~~~~~L~-~~gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 288 EANILFCRLDS-----------AMIDALL-KAGFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp CSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred CccEEEEEcCH-----------HHHHHHH-HcCCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 77899998873 2445555 4599886542 2467999999764 899999999999874
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.81 E-value=4.8e-18 Score=170.82 Aligned_cols=294 Identities=16% Similarity=0.162 Sum_probs=200.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHH----hcCCCCeEEEcCCCccchHH----HHhhhCCc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFC----LANPGDAFLVPSPYYAAFDR----DLSWRTGV 158 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~----l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~ 158 (477)
+.+.|+.+|++++ .+ ++.|++++++++++.+++.+ -.++||.|++.+-.|+.... .++.. |.
T Consensus 68 ~e~aR~~ia~llg--------a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~-g~ 138 (408)
T d1t3ia_ 68 YEAVRNKVAKFIN--------ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GA 138 (408)
T ss_dssp HHHHHHHHHHHTT--------CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CC
T ss_pred HHHHHHHHHHHhC--------CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc-Cc
Confidence 4578888999987 44 57899999999999998866 35789999999988886543 33444 89
Q ss_pred EEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccccccc
Q 011801 159 QIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVF 238 (477)
Q Consensus 159 ~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~ 238 (477)
++..++.+. +...+.+.+++++.+ ++++|.++.-+|-||..++ +++|.++|+++|+++|+|.+++ .
T Consensus 139 ~v~~~~~~~--~~~~~~~~l~~~~~~------~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~---~ 204 (408)
T d1t3ia_ 139 VLKFVQLDE--QESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQS---A 204 (408)
T ss_dssp EEEEECBCT--TSSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTT---T
T ss_pred eEeeeeccc--cccccHHHhhhccCC------CceEEEEecccccccccCc---HHHHhhhhhccCceeeecccee---c
Confidence 999888764 345688888887644 8999999999999999999 7788899999999999999997 3
Q ss_pred CCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc-----------------------
Q 011801 239 SSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS----------------------- 295 (477)
Q Consensus 239 ~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~----------------------- 295 (477)
+.-+ ..+... +..+++.|..|.+|-+| +|+++..++... ......
T Consensus 205 g~~~-id~~~~--------~~D~~~~s~hK~~gp~G--~g~l~v~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~r~ 272 (408)
T d1t3ia_ 205 PHYP-LDVQLI--------DCDWLVASGHKMCAPTG--IGFLYGKEEILE-AMPPFFGGGEMIAEVFFDHFTTGELPHKF 272 (408)
T ss_dssp TTSC-CCHHHH--------TCSEEEEEGGGTTSCTT--CEEEEECHHHHH-HSCCCSCSTTSEEEECSSCEEECCTTGGG
T ss_pred cccc-cccccc--------CCceEEeccccccCCCC--ccccccchhhhh-cCCceecCCcccccccccccccCCchhhh
Confidence 3222 344433 33478899999887555 788888665432 211100
Q ss_pred ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC-----CceEEEEeeccchhhccCc
Q 011801 296 SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS-----NAGLFFWMDLRHLLKEKTL 369 (477)
Q Consensus 296 ~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~-----~~g~~~~~~l~~~~~~~~~ 369 (477)
-.++.+.....++...++--. +--.++..++..+..+++.+.+.+. ++.+..+ ..+..+.+.++.. +
T Consensus 273 e~Gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~-~---- 345 (408)
T d1t3ia_ 273 EAGTPAIAEAIALGAAVDYLT--DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-H---- 345 (408)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-C----
T ss_pred cCCcHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC-C----
Confidence 023334444444444443110 1123444555566667777888776 4444421 1122344445531 1
Q ss_pred hHHHHHHHHHHHhcCeEEeCCCCCCC------CCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 370 EGEIALWRTIVNDVKLNVSPGSSFQC------TEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 370 ~~e~~l~~~ll~~~gI~v~pg~~f~~------~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
.+ ++. ..+.+.||.++.|+.|.. ..++++|||++.. +++|++.+++.|+++++.
T Consensus 346 -~~-~v~-~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 346 -AS-DVA-TMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp -HH-HHH-HHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HH-HHH-HHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 233 445788999999887642 2467899999876 899999999999998864
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.6e-18 Score=171.23 Aligned_cols=299 Identities=12% Similarity=0.129 Sum_probs=196.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH--HhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD--LSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~--~~~~~g~~~~~v~ 164 (477)
+.+.|+.++++++ .+ +..|++++|+|++++.++..++.+|+.+++....+...... +... +..+..+.
T Consensus 54 ~~ea~~~l~~llg--------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQ--------TRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERI-GARVHPMT 124 (388)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHH-C--CBCCB
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccc-cccccccc
Confidence 4667777777776 32 33699999999999999999999999999999887654322 2223 55555555
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+ .+..++.+++++.+.+. ++++|.+++.+|.||.+.+ +++|.++|+++|+++++|.+.+. ...+ .
T Consensus 125 ~~--~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~---g~~~-~ 190 (388)
T d1h0ca_ 125 KD--PGGHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASL---GGTP-L 190 (388)
T ss_dssp CC--TTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTT---TTSC-C
T ss_pred cC--CccccchHHHHHHhccC-----CcceEEEeeeeeccccccC---HHHHHHHhhcccccceecccccc---cccc-c
Confidence 44 34467888888877764 8899999999999999999 88889999999999999999973 2211 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH----------------h-------cc-cCCC
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK----------------M-------SS-FGLV 300 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~----------------~-------~~-~~~v 300 (477)
.+. ..+..+++.|..|.++.|+ .+|+++..++.+...... . .. .++.
T Consensus 191 d~~--------~~~~D~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 261 (388)
T d1h0ca_ 191 YMD--------RQGIDILYSGSQKALNAPP-GTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTI 261 (388)
T ss_dssp CTT--------TTTCSEEEEESSSTTCCCT-TCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCC
T ss_pred ccc--------ccccceecccccccccCCC-ceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccc
Confidence 211 2244577889999986333 567777755443322110 0 00 1112
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+...-.++...+.. +.+.-++...++..+..+++.+.+...|+....++ ....+.+.+|...+. .++.
T Consensus 262 ~~~~~~~~~~al~~--~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~------~~~~ 333 (388)
T d1h0ca_ 262 PVISLYSLRESLAL--IAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDW------RDIV 333 (388)
T ss_dssp CHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH------HHHH
T ss_pred cHHHHHHHHHHHHH--HHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCH------HHHH
Confidence 22222222222211 11122445555666677778888887776543221 112445666643322 2577
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEE-ecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVC-FAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~-~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+++++||.++.|. ++...+.|||+ ++. .+.++++.++++|++++++.+
T Consensus 334 ~~L~~~~gI~v~~G~--~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~ 385 (388)
T d1h0ca_ 334 SYVIDHFDIEIMGGL--GPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCP 385 (388)
T ss_dssp HHHHHHHCEECEECC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCEEEeCCc--hhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 788888899999885 34456789999 654 478999999999999998754
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.5e-16 Score=156.77 Aligned_cols=209 Identities=19% Similarity=0.210 Sum_probs=157.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
...|++.||+..+ .+..+++++++.|+..++..++++||.|+++...|.+....+ +.. |+++..+
T Consensus 61 ~~~LE~~la~LEg----------~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~-Gi~~~~~ 129 (392)
T d1gc0a_ 61 LNLLEARMASLEG----------GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRHV 129 (392)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccC-CcccccC
Confidence 5677777777765 467888999999999999999999999999999998876543 333 8888877
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.. |++++++++++ ++|+|++..|+||+..+.+ +++|+++|+++|+.+|+|..++.-++..|
T Consensus 130 d~~-------d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~P-- 191 (392)
T d1gc0a_ 130 DMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQRP-- 191 (392)
T ss_dssp CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCCG--
T ss_pred Ccc-------CHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccccCh--
Confidence 642 67889888864 8999999999999999999 99999999999999999999974322211
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHH-HHHhc--ccCCCchHHHHHHHHhcCChhhHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNC-GRKMS--SFGLVSSQTQYLLASMLSDDEFVD 319 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~-~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~ 319 (477)
+ ..+..+++.|++|.++ ....-.|.+++.++.+... ....+ ....+++...+.+..-|++-.
T Consensus 192 --l---------~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~--- 257 (392)
T d1gc0a_ 192 --L---------ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN--- 257 (392)
T ss_dssp --G---------GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH---
T ss_pred --H---------HhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHH---
Confidence 1 2244588999999985 3446677888866555442 22222 234578888888888888743
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 011801 320 NFLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 320 ~~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+.++..++...+.+.|+++
T Consensus 258 ----lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 258 ----LRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHHHHHhC
Confidence 33445556667788888776
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.76 E-value=1.5e-17 Score=169.94 Aligned_cols=325 Identities=14% Similarity=0.187 Sum_probs=200.0
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCe-------EEEcCCCccchHHHHh
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDA-------FLVPSPYYAAFDRDLS 153 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~-------vlv~~P~y~~~~~~~~ 153 (477)
.|.+..+..+|+++++++++ .+++++++++++|++.++.++.++|+. ++...+.+..+.....
T Consensus 70 ~y~~~~~~~~le~~~a~l~g----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~ 139 (465)
T d1ax4a_ 70 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 139 (465)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHC----------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH
Confidence 57777778899999999986 478999999999999999998765543 4444444444444444
Q ss_pred hhCCcEEEEEecc--------CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc-cCCCHHHHHHHHHHHHhcC
Q 011801 154 WRTGVQIVPVHCD--------ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLG-TTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 154 ~~~g~~~~~v~~~--------~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG-~~~~~~~l~~l~~~~~~~~ 224 (477)
.. |...+.+... ....+.+|.++|++++++.... .+.+++++.++|..| .+++.+++++|.++|++||
T Consensus 140 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 140 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 44 8887766432 1235678999999999864222 456666666666654 6789999999999999999
Q ss_pred eEEEeccccccccc--C-----CCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHH-HHHHH---
Q 011801 225 IHLVCDEIYAATVF--S-----SPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVV-NCGRK--- 293 (477)
Q Consensus 225 ~~lI~De~y~~~~~--~-----~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~-~~~~~--- 293 (477)
+++|+|+++..... . +....+..++..+.. .-..++..|.+|.+ .|.+.|+++++++... .....
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~~~~~~ 292 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMY--KYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCV 292 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHG--GGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhccccc--cccceeEeecccCc--ccccceeEeecchHHHHHhhhcccc
Confidence 99999999852110 0 001122333222110 01124555667765 5666899988765332 11111
Q ss_pred -h---cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhh---c
Q 011801 294 -M---SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLK---E 366 (477)
Q Consensus 294 -~---~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~---~ 366 (477)
. ..++.++.....++...+..... +.++ ++..++.+++.+.|.+.|+++..+.+++++.++...... .
T Consensus 293 ~~~~~~~~~~~~~~~~~a~~~~~~e~~~-~~~~----~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T d1ax4a_ 293 PMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYL----HYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPG 367 (465)
T ss_dssp HHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHH----HHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCG
T ss_pred ccccCCCcchhhHHHHHHHhhhhHHhhh-HHHH----HHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCcc
Confidence 1 11222333333333333221111 2222 233445678899999999888887777777766553321 1
Q ss_pred cCchHHHHHHHHHHHhcCeEEeCCCCC-----------CCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhhh
Q 011801 367 KTLEGEIALWRTIVNDVKLNVSPGSSF-----------QCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 367 ~~~~~e~~l~~~ll~~~gI~v~pg~~f-----------~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+.. ..+...++.+.||...+.... .....+.+|+++.. .|+|++|.++++|++++++.+
T Consensus 368 ~~~~~-~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 368 DQFPA-QAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp GGCHH-HHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ccchh-HHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22222 244566677779875432111 01123579998742 389999999999999987643
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=2e-16 Score=155.57 Aligned_cols=297 Identities=13% Similarity=0.164 Sum_probs=185.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCc--EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEE
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDR--IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVP 162 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~--i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~ 162 (477)
-..+.|+.++++++ ++++. +++|+|+|+++++++..+..+++.+++....+... ....... +.....
T Consensus 34 ~~~~~r~~l~~l~~--------~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (361)
T d1m32a_ 34 VVEQIRQQLTALAT--------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHA 104 (361)
T ss_dssp THHHHHHHHHHHHC--------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhh-hccccc
Confidence 46789999999987 45554 77889999999999999988888888877664332 2222323 555554
Q ss_pred EeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 163 VHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 163 v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
+....... ...+..+.... .+.+++.+.++.-+|-||...+ +++|.++|+++|+++++|.+++. +..+
T Consensus 105 ~~~~~~~~--~~~~~~~~~~~----~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~---G~~~ 172 (361)
T d1m32a_ 105 YDCGEVAR--PDVQAIDAILN----ADPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSF---GGIP 172 (361)
T ss_dssp EECCTTSC--CCHHHHHHHHH----HCTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT---TTSC
T ss_pred ccccccCC--ccchhhHHHHH----hccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeeccccc---Cccc
Confidence 44433222 22222222211 2458999999999999999999 88889999999999999999983 2222
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCC-CCceEEEEEeCCHHHHHHH-----------------H--HhcccCCCch
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGL-PGFRVGIVYSFNDTVVNCG-----------------R--KMSSFGLVSS 302 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~-~G~RvG~i~~~~~~i~~~~-----------------~--~~~~~~~vs~ 302 (477)
..+. ..+..+++.|..|.++. +| +|+++..++.+.... . .....++.+.
T Consensus 173 -~d~~--------~~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 241 (361)
T d1m32a_ 173 -MDIA--------ALHIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPT 241 (361)
T ss_dssp -CCTT--------TTTCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCH
T ss_pred -cccc--------ccccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCc
Confidence 2221 23556888999998853 45 788887543321110 0 0011122333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 303 QTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 303 ~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
....++...+..... +.......++.+...+.+.+.++..|+....+. +...+.+.+|..... ...++...
T Consensus 242 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~----~~~~~~~~- 315 (361)
T d1m32a_ 242 HTVLAFAQALKELAK-EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY----RFSEFYRR- 315 (361)
T ss_dssp HHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC----CHHHHHHH-
T ss_pred hhhhHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCC----CHHHHHHH-
Confidence 444444433332110 222344455666666777888888876543321 222344566643211 11234454
Q ss_pred HHhcCeEEeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHHH
Q 011801 380 VNDVKLNVSPGSSFQCTEPGWFRVCF-ANMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~~~~~~Rl~~-~~~~~e~l~~~l~~l~~~~ 424 (477)
+.+.||.+.+|.. ..++.|||+. +..++++++.++++|++++
T Consensus 316 l~~~gi~i~~G~~---~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 316 LKEQGFVIYPGKV---SQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHTTEECEECCC---SSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHCCcEEECCCc---CCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 4566999998854 3467899985 3459999999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=1.9e-16 Score=160.66 Aligned_cols=319 Identities=13% Similarity=0.085 Sum_probs=189.0
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHH-HHHHHHHHh---cCCCCeEEEcCCCccchHHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATG-ANELIMFCL---ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~-al~~i~~~l---~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v 163 (477)
...+...+.+++.+..|.+ .....++|+|+++ ++.+++.++ ..+++.|+++...|..+...+... |++.+.|
T Consensus 92 ~~~le~~~~~~~~~l~g~~---~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~-g~~~~~v 167 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVH---SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC---cccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc-CCeeEEE
Confidence 3467777777777666621 1245666666665 444444443 356789999999999999888877 9998888
Q ss_pred ecc-CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCC
Q 011801 164 HCD-ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~-~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~ 242 (477)
.+. .++++.+|+++|++++++.... ++.+|+++.|+|++|.+-+ +++|.++|+++|+++|+|++|+........
T Consensus 168 ~~~~~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~ 242 (445)
T d3bc8a1 168 ENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMH 242 (445)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred EeeccCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccc
Confidence 653 2457899999999999864322 5788999999999999988 888999999999999999999743111000
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCCch--HHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSS--QTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~--~~q~~~~~~L~~~~~~~~ 320 (477)
......+ ..+..++..|.+|.++ .+...|+++..+....+............. ..+++....+....
T Consensus 243 ---~~~~~~~---~~~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---- 311 (445)
T d3bc8a1 243 ---LIQQGAR---VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG---- 311 (445)
T ss_dssp ---HHHHHHH---HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHH----
T ss_pred ---cchhccC---cCCcceEEecCccccc-cCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhc----
Confidence 1111110 1123366789999887 444577888877766655544333332222 22222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hCCCeEec-CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLE----QVGINCLK-SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGS 391 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~----~~gi~~~~-~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~ 391 (477)
..+..+...+..+++.+.|. ..|..+.. +......++.+........ ....++...+ .+.||... ++.
T Consensus 312 -~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~L-~~~gI~~~~~~~~~~ 388 (445)
T d3bc8a1 312 -YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSML-FTRQVSGARAVPLGN 388 (445)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHH-HHTTCCSCEEECSCC
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCC-CCHHHHHHHH-HHcCCCcceeecccc
Confidence 22223333333444444443 33544332 2223344444432211111 1222344443 44466211 111
Q ss_pred ----------CCCC----CCCCEEEEEecc-CCHHHHHHHHHHHHHHHhhhhc
Q 011801 392 ----------SFQC----TEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 392 ----------~f~~----~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.|+. ....++|++++. .+++++|.++++|++++++.+.
T Consensus 389 ~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 389 VQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp EEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0111 112468988764 4899999999999999987654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.74 E-value=9.8e-16 Score=150.93 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=189.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHh---hhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLS---WRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~---~~~g~~~~~v~ 164 (477)
...|.+.+|..-+ .+..+++++++.|+..++..++++||.|++++..|.+..+.+. ...|+++..++
T Consensus 65 ~~~LE~~la~LEg----------g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd 134 (397)
T d1y4ia1 65 TDALEKKLAVLER----------GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVD 134 (397)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccC
Confidence 4566667777654 4567888899999999999999999999999999987655432 12499998876
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.. |.+++++++++ ++|+|++..|+||+..+.+ +++|+++|+++|+++|+|..++.-++. .
T Consensus 135 ~~-------d~~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~----~ 194 (397)
T d1y4ia1 135 AG-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ----Q 194 (397)
T ss_dssp TT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----C
T ss_pred CC-------CHHHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccC----c
Confidence 42 57888888754 8999999999999999999 889999999999999999998743222 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHH-HHHhcc--cCCCchHHHHHHHHhcCChhhHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNC-GRKMSS--FGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~-~~~~~~--~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
++ ..+..++++|++|.+| ....=.|.+++.++.+.+. ...++. ...+++...+++..-|+.-.
T Consensus 195 Pl---------~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~---- 261 (397)
T d1y4ia1 195 PL---------QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG---- 261 (397)
T ss_dssp GG---------GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH----
T ss_pred ch---------hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHH----
Confidence 21 1244588999999985 2234457777766555442 222222 33467888888888887743
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-Ce-EecC-----------------CceEEEEeeccchhhccCchHHHHHHHHHHH
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVG-IN-CLKS-----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVN 381 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~g-i~-~~~~-----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~ 381 (477)
-+.++..++...+.+.|+++. ++ +.-| .+|+ +.+++.... +...++++
T Consensus 262 ---lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~-~sf~~~~~~---------~~~~~f~~ 328 (397)
T d1y4ia1 262 ---IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGI-ISFEIAGGL---------EAGRRMIN 328 (397)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSE-EEEEETTHH---------HHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeE-EEEEecCCH---------HHHHHHHH
Confidence 234455667777888888763 32 2211 2444 445555321 22345555
Q ss_pred hcCeEEeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 382 DVKLNVSPGSSFQC-------------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 382 ~~gI~v~pg~~f~~-------------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
...+. ..+.+++. -.++.+||+++. |+.+.+++.|++++++
T Consensus 329 ~L~l~-~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl---Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 329 SVELC-LLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL---EDPEDIINDLEHAIRK 394 (397)
T ss_dssp TCSSS-EECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred cCCcc-ceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc---CCHHHHHHHHHHHHHH
Confidence 54442 22333321 135789999995 5566778888887764
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2e-15 Score=148.28 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=189.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
...|.+.+|+.-+ .+..+++++++.|+..++..++++||.|++....|.+....+.. ..|.++..+.
T Consensus 52 ~~~le~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d 121 (384)
T d1cs1a_ 52 RDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 121 (384)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhccccccccccc
Confidence 4577777777765 46788999999999999999999999999999999776443322 2267766555
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
. .|.+++++++.+ ++++|++..|+||+..+.+ +++|+++|+++|+.+|+|..++.-++..
T Consensus 122 ~-------~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~---- 181 (384)
T d1cs1a_ 122 Q-------GDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN---- 181 (384)
T ss_dssp T-------TCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----
T ss_pred C-------CCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccccc----
Confidence 2 267888888765 8999999999999999999 8889999999999999999996332221
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHH-hccc-CCCchHHHHHHHHhcCChhhHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRK-MSSF-GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~-~~~~-~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
++ ..+..++++|++|.++ ....=.|.+++.++.+...+.. ...+ ..+++...+++..-|+.-.
T Consensus 182 Pl---------~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~----- 247 (384)
T d1cs1a_ 182 PL---------ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV----- 247 (384)
T ss_dssp GG---------GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH-----
T ss_pred cc---------ccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhH-----
Confidence 11 2245588999999985 2224457788877766544432 2222 3467788888888887743
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC-C-eEecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHHhc
Q 011801 322 LVETSKRLAKRHHNFTKGLEQVG-I-NCLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDV 383 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~ 383 (477)
-+.++..++...+.+.|+++. + ++.-| .+|-.+.+.+.... +-..++++.-
T Consensus 248 --lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~---------~~a~~f~~~L 316 (384)
T d1cs1a_ 248 --PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE---------QTLRRFLGGL 316 (384)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCH---------HHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchH---------HHHHHHHHhC
Confidence 234455667778888888762 2 22211 12334455555321 1233445544
Q ss_pred CeEEeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhhh
Q 011801 384 KLNVSPGSSFQC-------------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 384 gI~v~pg~~f~~-------------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~~ 427 (477)
.+. ..+.+++. -.++.|||+++. |+.+.+++.|+++++..
T Consensus 317 ~l~-~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl---Ed~eDLi~Dl~~AL~aa 381 (384)
T d1cs1a_ 317 SLF-TLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAA 381 (384)
T ss_dssp SSS-EEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred Ccc-eeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHHHh
Confidence 432 12222221 135689999995 66777788888888653
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.73 E-value=6.1e-16 Score=156.38 Aligned_cols=285 Identities=11% Similarity=0.078 Sum_probs=178.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc-CCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD-ISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~-~~~~f~i~~~~l~~~~~~~~~ 187 (477)
....++..|+++++.+++.+.. .+++.|+++.-.++.+...+... |.+.+.+++. .+..+.+|+++|++++++...
T Consensus 130 ~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~ 208 (434)
T d2z67a1 130 VHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVETVLDGDRVYVPVEDIENAIKKEIE 208 (434)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEECCEEETTEEECCHHHHHHHHHHHHH
T ss_pred cceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHh-CCcceEEEeecCCCccCCCHHHHHHHHHhhhh
Confidence 3455666777777777776653 37899999999999898888876 9998887642 234678999999999987654
Q ss_pred hCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCC
Q 011801 188 ASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLS 267 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlS 267 (477)
.+ ++.+|++++|++++|.+.+ +++|.++|+++|+++++|++|+........ ...... ..+..+++.|++
T Consensus 209 ~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~---~~~~~~----~~~~D~~~~s~h 277 (434)
T d2z67a1 209 LG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLE---KLKKAF----KYRVDAVVSSSD 277 (434)
T ss_dssp TT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH---HHHHHH----TSCCSEEEEEHH
T ss_pred cC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccc---cccccc----cCCcceEEEcCc
Confidence 43 5668899999999999988 888999999999999999999742100000 001111 224457788999
Q ss_pred cccCCCCceEEEEEeCCHHHHHHHHHhcccCCCchH--HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Q 011801 268 KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQ--TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQ--- 342 (477)
Q Consensus 268 K~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~vs~~--~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~--- 342 (477)
|.++ .+...|+++..++.+.+...+.......... ..++....+.... +.+..++..+..+++.+.|++
T Consensus 278 K~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g-----~~~~~~~~~~~a~~l~~~L~~l~~ 351 (434)
T d2z67a1 278 KNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKN-----YLELVKNQKNSKKLLDELLNDLSK 351 (434)
T ss_dssp HHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHHhhh
Confidence 9987 4445677877777766655554443322222 2223323333222 233333444444555555544
Q ss_pred -CCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCC-----CCCCCEEEEEeccC-CHH
Q 011801 343 -VGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQ-----CTEPGWFRVCFANM-DDD 411 (477)
Q Consensus 343 -~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~-----~~~~~~~Rl~~~~~-~~e 411 (477)
.|..+........+.+.+.. + ..++...+ .+.||... +...++ ....+++|++++.. ++|
T Consensus 352 ~~g~~ll~~~~~~~~~~~~~~--~------~~~l~~~L-~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~e 422 (434)
T d2z67a1 352 KTGGKFLDVESPIASCISVNS--D------PVEIAAKL-YNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTE 422 (434)
T ss_dssp HSSCCBCCCCCSSEEEEECSS--C------HHHHHHHH-HHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHH
T ss_pred hcCceecCCCCCceeeeecCC--C------HHHHHHHH-HHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHH
Confidence 36665543332222222221 1 12344444 45588532 111111 11246899988653 999
Q ss_pred HHHHHHHHHHH
Q 011801 412 TLQVALNRIAA 422 (477)
Q Consensus 412 ~l~~~l~~l~~ 422 (477)
++|.++++|++
T Consensus 423 dID~~i~~L~k 433 (434)
T d2z67a1 423 DIVNSVSKLEK 433 (434)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999986
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=2.8e-15 Score=147.18 Aligned_cols=209 Identities=15% Similarity=0.145 Sum_probs=151.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
...|.+.+|..-+ .+..+++++++.|+.+ +..++++||.|++..+.|.+....++. ..|+++..+.
T Consensus 51 ~~~le~~la~LE~----------~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d 119 (380)
T d1ibja_ 51 RDALESLLAKLDK----------ADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 119 (380)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred HHHHHHHHHHHcC----------CceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccC
Confidence 4567777777654 4567788888999975 457889999999999999887655432 2388877765
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.. +.+++++++++ ++|+|++..|+||+..+.+ +++|+++|+++|+++|+|..++..++..
T Consensus 120 ~~-------~~~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~---- 179 (380)
T d1ibja_ 120 TT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR---- 179 (380)
T ss_dssp TT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC----
T ss_pred cc-------hHHHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccccc----
Confidence 32 57888877743 8999999999999999999 8888999999999999999997432211
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHh-ccc-CCCchHHHHHHHHhcCChhhHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKM-SSF-GLVSSQTQYLLASMLSDDEFVDNF 321 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~-~~~-~~vs~~~q~~~~~~L~~~~~~~~~ 321 (477)
++ ..+..++++|++|.++=.| .=.|.++..++.+...++.. ... ..+++...+++.+-|++-+
T Consensus 180 Pl---------~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~----- 245 (380)
T d1ibja_ 180 PL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA----- 245 (380)
T ss_dssp GG---------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-----
T ss_pred cc---------ccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh-----
Confidence 11 2245588999999986222 44577777766665544333 223 3467788888888888743
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 011801 322 LVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 322 ~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+.++..++...+.+.|+++
T Consensus 246 --lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 246 --LRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHHTC
T ss_pred --hhHHHHHHHHHHHHHHHHhC
Confidence 33445566777788888876
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=6.9e-16 Score=152.74 Aligned_cols=288 Identities=17% Similarity=0.203 Sum_probs=185.9
Q ss_pred CcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEec
Q 011801 87 GLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHC 165 (477)
Q Consensus 87 G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~ 165 (477)
...+|++.+|++++ .+..++++++|.|+.+++.++ .++||.|+++..+|+.....+... |.+++.+++
T Consensus 32 ~v~~~E~~la~~~g----------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~-g~~pv~~d~ 100 (376)
T d1mdoa_ 32 KNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANPVMVDV 100 (376)
T ss_dssp HHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECB
T ss_pred HHHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhcc-ccceeeecc
Confidence 36899999999997 356788888899999999998 799999999999999999988877 999999998
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
+. +.+.+|++.|++++.+ ++++|+++ +..|...+ +++|.++|+++|+.||+|.+++ ++..- ..
T Consensus 101 ~~-~~~~~d~~~l~~~i~~------~tkaIi~~---h~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a---~g~~~-~~ 163 (376)
T d1mdoa_ 101 DR-DTLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHA---TGTSY-KG 163 (376)
T ss_dssp CT-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTC---TTCEE-TT
T ss_pred cc-cccCCCHHHHHHhcCC------CCeEEEEe---CCCCCccc---hhHHHHHHHhcCceEEeccchh---ccCee-CC
Confidence 75 4688999999998864 89998876 56898888 7778888889999999999997 33210 00
Q ss_pred HHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccCC------------------------
Q 011801 246 VAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL------------------------ 299 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~------------------------ 299 (477)
. ... ..+. .+.|| +|.++. ...|.+++.++.+...++.+..++.
T Consensus 164 ~--~~g----~~g~--~~~Sf~~~K~l~~--g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n 233 (376)
T d1mdoa_ 164 R--HIG----ARGT--AIFSFHAIKNITC--AEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYK 233 (376)
T ss_dssp E--ETT----SSSE--EEEECCTTSSSCS--SSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCB
T ss_pred e--ecc----cccC--ccccCCCcCCCCC--CCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccc
Confidence 0 000 2232 34465 688863 3368899988888777766543321
Q ss_pred --CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCe-EecCCc----eEEEEeeccchhhccCchHH
Q 011801 300 --VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGIN-CLKSNA----GLFFWMDLRHLLKEKTLEGE 372 (477)
Q Consensus 300 --vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~-~~~~~~----g~~~~~~l~~~~~~~~~~~e 372 (477)
++....+....-|.. +.+..++.++.++.+.+.|.+.... ...... .++.++......... ...+
T Consensus 234 ~~~~~~~Aai~~~qL~~-------~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Rd 305 (376)
T d1mdoa_ 234 YNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCG-ITRD 305 (376)
T ss_dssp CCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHS-SCHH
T ss_pred cccchhhhhhhhhhhhh-------hhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccch-hhHH
Confidence 111211222222221 2233334455566777777776432 221111 111111111111110 0111
Q ss_pred HHHHHHHHHhcCeEEeCCCCCCC------------CC---------CCEEEEEec-cCCHHHHHHHHHHHHHHH
Q 011801 373 IALWRTIVNDVKLNVSPGSSFQC------------TE---------PGWFRVCFA-NMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 373 ~~l~~~ll~~~gI~v~pg~~f~~------------~~---------~~~~Rl~~~-~~~~e~l~~~l~~l~~~~ 424 (477)
++.+.| ++.||.+++. |.+ .. ...+.|.+. .+++++++..++.|++++
T Consensus 306 -~l~~~L-~~~gI~~~~~--y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 306 -ALMASL-KTKGIGTGLH--FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp -HHHHHH-HHTTBCCBCC--CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHH-HHCCCCeeeE--CcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 355554 5669987643 211 00 234777443 358999999999999986
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.71 E-value=1e-15 Score=151.33 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=189.1
Q ss_pred cHHHHHHHHHHHhcccCCCCcc-CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTF-DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~-~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
+.+.|+.++++++ . +...|++++|+|++++.++..+..+|+.+++..-.+.... ...... +.....+.
T Consensus 53 ~~~~r~~l~~ll~--------~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 123 (377)
T d1vjoa_ 53 MDEIQSLLRYVWQ--------TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 123 (377)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhh-cccccccc
Confidence 5677777777776 3 3457888889999999999999999999998877765432 222323 55555555
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.... -..+.+..+....+. +++.+.+++-+|.||+..+ ++++.++|+++|.++++|.+++ ++..+ .
T Consensus 124 ~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~---~g~~~-~ 189 (377)
T d1vjoa_ 124 KPWG--EVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGGVP-I 189 (377)
T ss_dssp CCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTTSC-C
T ss_pred cCCC--CcccchhhhhhhhcC-----cceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchh---hhhhh-h
Confidence 4332 234555555555443 7888899988999999999 8888899999999999999997 33222 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcc--------------------c-CCCchH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSS--------------------F-GLVSSQ 303 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~--------------------~-~~vs~~ 303 (477)
.+. ..+..+++.|..|.++ ++-.+|+++..++.+......... . +..+..
T Consensus 190 ~~~--------~~~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T d1vjoa_ 190 FLD--------AWGVDLAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPIN 260 (377)
T ss_dssp CTT--------TTTCSEEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHH
T ss_pred ccc--------ccccceeeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCccccccccccee
Confidence 211 2345577889999875 333567777755444332211100 0 111122
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC---ceEEEEeeccchhhccCchHHHHHHHHHH
Q 011801 304 TQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN---AGLFFWMDLRHLLKEKTLEGEIALWRTIV 380 (477)
Q Consensus 304 ~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~---~g~~~~~~l~~~~~~~~~~~e~~l~~~ll 380 (477)
....+..+.... .+.-.+...++.+++.+.+.+.+.+.++....+. ....+.+.+++.... .++...++
T Consensus 261 ~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~~------~~l~~~L~ 332 (377)
T d1vjoa_ 261 LYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDG------KAVARRLL 332 (377)
T ss_dssp HHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCH------HHHHHHHH
T ss_pred chhhhHHHHhhh--hhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCCH------HHHHHHHH
Confidence 222222222111 1222355566777777888888888876544221 122344556643222 25777888
Q ss_pred HhcCeEEeCCCCCCCCCCCEEEEE-eccC-CHHHHHHHHHHHHHHHh
Q 011801 381 NDVKLNVSPGSSFQCTEPGWFRVC-FANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 381 ~~~gI~v~pg~~f~~~~~~~~Rl~-~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
+++||.+..|.. +...+.|||+ ++.. ++|++++++++|+++++
T Consensus 333 ~~~gI~v~~G~~--~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 333 NEHNIEVGGGLG--ELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp HHHCEECEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred hcCCEEEecCcc--cccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 888999998864 3456789998 5644 68999999999999874
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.70 E-value=1.4e-14 Score=142.79 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=148.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----hhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----SWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----~~~~g~~~~~v 163 (477)
...|.+.||+.-+ .+..+++++++.|+..++.+++++||.|++....|.+....+ +.. |+++..+
T Consensus 69 ~~~LE~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~-gi~~~~~ 137 (398)
T d1qgna_ 69 TVVLEEKISALEG----------AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVI 137 (398)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccc-ccccccc
Confidence 4567777887764 467889999999999999999999999999999998765443 333 8887766
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+.. +.++.++.+.+ .++++|++..|+||+..+.+ +++|+++|+++|+++|+|..++.-++-.+
T Consensus 138 ~~~-------~~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~P-- 200 (398)
T d1qgna_ 138 DPA-------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKA-- 200 (398)
T ss_dssp CSS-------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCT--
T ss_pred ccc-------chhhhhhhhcc-----ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCCc--
Confidence 522 34444443332 38999999999999999999 89999999999999999999974322211
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHH-hcccC-CCchHHHHHHHHhcCChhhHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRK-MSSFG-LVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~-~~~~~-~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
+ ..+..+++.|++|.+|=.| .=.|.+.. ++......+. ...++ .+++...+.+..-|++-+
T Consensus 201 -----l------~~GaDiVihS~TKy~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~---- 264 (398)
T d1qgna_ 201 -----L------ALGADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH---- 264 (398)
T ss_dssp -----T------TTTCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH----
T ss_pred -----h------hhCCCEEEEechhhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHH----
Confidence 1 2345588999999986333 33455555 4444333332 23333 467788888888777643
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
-+.++..++...+.+.|+++
T Consensus 265 ---lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 265 ---LRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHHHHHHhC
Confidence 33445566777788888876
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.70 E-value=9.1e-16 Score=152.43 Aligned_cols=297 Identities=14% Similarity=0.117 Sum_probs=186.1
Q ss_pred cHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH--HHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~ 164 (477)
+.+.|+.++++++ .+ ++.|++++|+|++++.++..+..+|+.+++..-...+.. ..+... +...+.+.
T Consensus 52 ~~~~r~~L~~ll~--------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~-~~~~~~~~ 122 (388)
T d2ch1a1 52 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 122 (388)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhh-cccccccc
Confidence 4566777777776 23 345777889999999999999999999998876654433 223333 77777777
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.... ...+.+..+++.... +++.+.+++-+|.||...+ ++++.++|+++|+.+++|.+.+ +...+ .
T Consensus 123 ~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~~~~~~vD~~ss---~g~~p-i 188 (388)
T d2ch1a1 123 GPPD--RPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS---LCGVP-F 188 (388)
T ss_dssp CCTT--SCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTTBC-C
T ss_pred cccc--cccchhhhhhhhccC-----Ccceeeeeecccccccccc---hhhhcchhccccceeeeeeeec---ccccc-c
Confidence 6543 345677777766543 7899999999999999999 7778888889999999999998 33322 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------------------------cccCCC
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------------------------SSFGLV 300 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------------------------~~~~~v 300 (477)
.+. ..+..+++.|-.|.++ +.-.+|+++..++.+....... ...++.
T Consensus 189 d~~--------~~~~d~~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 259 (388)
T d2ch1a1 189 YMD--------KWEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTV 259 (388)
T ss_dssp CTT--------TTTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCC
T ss_pred chh--------ccCceEEEEccccccC-CCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccc
Confidence 211 3355677889999885 3334778877655443322110 001112
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC----CceEEEEeeccchhhccCchHHHHHH
Q 011801 301 SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS----NAGLFFWMDLRHLLKEKTLEGEIALW 376 (477)
Q Consensus 301 s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~----~~g~~~~~~l~~~~~~~~~~~e~~l~ 376 (477)
+...-..+...+.... ..-.....++.+.........+...++....+ .+...+.+.+++..+. .++.
T Consensus 260 ~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~------~~l~ 331 (388)
T d2ch1a1 260 ASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDW------WKVS 331 (388)
T ss_dssp CHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH------HHHH
T ss_pred hHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCH------HHHH
Confidence 2222222223222111 11122223333333344444444444333221 1222455677754332 2567
Q ss_pred HHHHHhcCeEEeCCCCCCCCCCCEEEEE-eccC-CHHHHHHHHHHHHHHHhh
Q 011801 377 RTIVNDVKLNVSPGSSFQCTEPGWFRVC-FANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~~Rl~-~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
..+.+++||.|.+|. ++...+.|||+ ++.. +.|+++.+++.|+++++.
T Consensus 332 ~~l~~~~gI~v~~G~--~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 332 QYAMNNFSLEVQGGL--GPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp HHHHHHHCBCCBCCC--GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEeCCC--ccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 777788899999885 34456789999 6655 689999999999999986
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.70 E-value=2.6e-15 Score=146.19 Aligned_cols=304 Identities=13% Similarity=0.112 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-----HhhhCCcEEEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-----LSWRTGVQIVPV 163 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-----~~~~~g~~~~~v 163 (477)
.++.+...+...+.++ ...-+|-.. +++.|+..++.+|++|||+|+..++...++... .... ..+.+.+
T Consensus 68 d~iE~la~~ra~~lF~----a~~anVqp~-SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~-~~~~~~y 141 (405)
T d1kl1a_ 68 DIVEELARERAKQLFG----AEHANVQPH-SGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-QYNFVAY 141 (405)
T ss_dssp HHHHHHHHHHHHHHHC----CSEEECCCS-SHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHH-HSEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCcceeecc-CchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccce-EEEEEEe
Confidence 3444334444554444 222344444 456789999999999999999999887775432 1122 4678888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. +++.+|.+++++.+++. ++|+|++..-.+|- .++ ++++.++|.+.|.+++.|-++......+.-+
T Consensus 142 ~~d~-~~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~ 210 (405)
T d1kl1a_ 142 GVDP-ETHVIDYDDVREKARLH-----RPKLIVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210 (405)
T ss_dssp CBCT-TTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS
T ss_pred ccch-hcccccHHHHHHHHHhh-----CcceEEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhc
Confidence 8875 46789999999999887 89987765444332 345 7777778889999999999985332222222
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccCCC-chHHHHHHHHhcCChhhHHHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLV-SSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~v-s~~~q~~~~~~L~~~~~~~~~~ 322 (477)
.+..+ ...++..|.+|+| +|-|-|.|++.+ .+.+.+.+...++.. ++....+++.+..-.+......
T Consensus 211 ~~P~~---------~aDvvt~tThKtl--rGPrgg~I~~~~-~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~f 278 (405)
T d1kl1a_ 211 PNPVP---------YAHFVTTTTHKTL--RGPRGGMILCQE-QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDF 278 (405)
T ss_dssp CCSTT---------TCSEEEEESSSTT--CCCSCEEEEECH-HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHH
T ss_pred CChhh---------hhhheeccccccc--cCCCCceEEecc-hhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHH
Confidence 22111 1236688999998 799999999954 444444433222322 2222222222222112112223
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCCCC
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQCTE 397 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~~~ 397 (477)
++..+++.++.+.|.+.|.+.|+++... ...-.+|+++....- .. ..+..+|++.||.+. |+..=.+..
T Consensus 279 k~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~~----~g--~~ae~~Le~agI~~Nkn~iP~d~~~~~~ 352 (405)
T d1kl1a_ 279 KAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQL----TG--KTAEKVLDEVGITVNKNTIPYDPESPFV 352 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC----CH--HHHHHHHHHHTEECEECCCTTCSSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeecCCCccceeeccccccCC----cH--HHHHHHHHHcCeEEcCCcCCCCCCCCCC
Confidence 5666778889999999999999998752 223478889875211 11 245667888899876 443211223
Q ss_pred CCEEEEEecc-----CCHHHHHHHHHHHHHHHhhh
Q 011801 398 PGWFRVCFAN-----MDDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 398 ~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~ 427 (477)
+..+||+... +.++++.++.+.|.++++..
T Consensus 353 ~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~ 387 (405)
T d1kl1a_ 353 TSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred CCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 4679999844 46899999999999999653
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.70 E-value=4.1e-15 Score=151.44 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCcc-----CCCcEEEeCChHHHHHHHHHHhcC----------CC---------CeEEE
Q 011801 85 YHGLPEFRQAVAKFMGKGRGGRVTF-----DPDRIVMGGGATGANELIMFCLAN----------PG---------DAFLV 140 (477)
Q Consensus 85 ~~G~~~lr~aia~~~~~~~g~~~~~-----~~~~i~~t~G~t~al~~i~~~l~~----------~G---------d~vlv 140 (477)
.+...++.+.+.+|+.+..|.+-.+ ....-++|+|+|+++..++.+-.. +| -.|++
T Consensus 108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~ 187 (476)
T d1js3a_ 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence 3445789999999999988743221 123578999999999988865311 11 14777
Q ss_pred cCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHH
Q 011801 141 PSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFI 220 (477)
Q Consensus 141 ~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~ 220 (477)
++-++..+.+.+... |+.+..++++ +++.+|+++|++++++..+++..+-+|+.+..++.||.+=+ +++|.++|
T Consensus 188 s~~~H~Si~ka~~~l-Gl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---l~~I~~i~ 261 (476)
T d1js3a_ 188 SDQAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPIC 261 (476)
T ss_dssp ETTCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHH
T ss_pred cccccHHHHHHHHhc-CceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc---HHHHHHHH
Confidence 788888899988888 9999999986 46799999999999998888888888888999999999988 88899999
Q ss_pred HhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHH-----h-
Q 011801 221 NDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRK-----M- 294 (477)
Q Consensus 221 ~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~-----~- 294 (477)
+++|+|+++|.+|++...-.+.+......++ ..| -+..+++|.++ ....+|.++..+......... +
T Consensus 262 ~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~----~aD--Sit~d~HK~l~-~P~~~g~~l~r~~~~~~~~~~~~~~~~~ 334 (476)
T d1js3a_ 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVE----FAD--SFNFNPHKWLL-VNFDCSAMWVKRRTDLTGAFKLDPVYLK 334 (476)
T ss_dssp HHTTCEEEEECTTGGGGGGSTTTGGGGTTGG----GCS--EEEECHHHHSS-CCSSCEEEEESCHHHHHGGGC-------
T ss_pred HhcCcEEEEecccchhhhhhcchhhhhcCCc----ccc--eeeecCccccc-cCCcceeecccchHHHHHHHhcChhhhc
Confidence 9999999999999886443333333222222 123 34558999987 555788888876543221100 0
Q ss_pred ------------cccCC-----CchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec-CCceEE
Q 011801 295 ------------SSFGL-----VSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK-SNAGLF 355 (477)
Q Consensus 295 ------------~~~~~-----vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~-~~~g~~ 355 (477)
..++. ...+..++....+... -+++..++..+..+++.+.+++. ++++.. +.-+ .
T Consensus 335 ~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~-----g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~-i 408 (476)
T d1js3a_ 335 HSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVK-----GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG-L 408 (476)
T ss_dssp -----CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSS-E
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHhHh-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceE-E
Confidence 00000 1123333333333332 24555556667778899999887 787764 4444 4
Q ss_pred EEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHHHhh
Q 011801 356 FWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM--DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 356 ~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~--~~e~l~~~l~~l~~~~~~ 426 (477)
+.+++.... ....++.+++.++-.+.+.+.. ..+..++|+++.+. ++++++.+++.|++..++
T Consensus 409 V~Fr~~~~d-----~~n~~l~~~l~~~G~~~~s~t~---~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 409 VCFRLKGSD-----GLNEALLERINSARKIHLVPCR---LRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (476)
T ss_dssp EEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEE---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCh-----HHHHHHHHHHHhcCCEEEeeee---ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445554311 1112466666665335454321 12345899999764 788999999999998765
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=8.6e-15 Score=143.14 Aligned_cols=305 Identities=14% Similarity=0.091 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH-----HhhhCCcEEEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD-----LSWRTGVQIVPV 163 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~-----~~~~~g~~~~~v 163 (477)
.++.+...+...+.++ ....+|-. .+++.|+..++.+|++|||+|+..+...+++... +... ..+.+++
T Consensus 71 D~iE~la~~ra~~lF~----a~~anVqp-~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~-~~~~~~y 144 (416)
T d1dfoa_ 71 DIVEQLAIDRAKELFG----ADYANVQP-HSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGK-LYNIVPY 144 (416)
T ss_dssp HHHHHHHHHHHHHHHT----CSEEECCC-SSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHH-HSEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCcceeec-ccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCc-eEEEEec
Confidence 3444333344444444 22234444 4567799999999999999999999998876432 1112 4577888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
+++. +..+|.+++++..++. ++|+|++..-.+| ..++ ++++.++|.+.|.++++|.++......+..+
T Consensus 145 ~~d~--~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~ 212 (416)
T d1dfoa_ 145 GIDA--TGHIDYADLEKQAKEH-----KPKMIIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVY 212 (416)
T ss_dssp CBCS--SSSBCHHHHHHHHHHH-----CCSEEEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred ccCC--ccCccHHHHHHHHHHh-----ccceEEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceecccc
Confidence 8774 3459999999998876 8998877643333 4566 7777778889999999999985432222222
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCC--HHHHHHHHHhcccCC-CchHHHHHHHHhcCChhhHHH
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFN--DTVVNCGRKMSSFGL-VSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~--~~i~~~~~~~~~~~~-vs~~~q~~~~~~L~~~~~~~~ 320 (477)
.+... ...++..|++|+| +|-|-|+|++.. +.+.+.+.+..-++. .++....+++.+..-.+....
T Consensus 213 ~sP~~---------~aDvvt~tThKtl--rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~ 281 (416)
T d1dfoa_ 213 PNPVP---------HAHVVTTTTHKTL--AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 281 (416)
T ss_dssp CCCTT---------TSSEEEEESSSTT--CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSH
T ss_pred CCccc---------ccceeeeehhhcc--cCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCH
Confidence 22111 1237789999998 799999999953 344444433222222 222222221111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEe----CCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVS----PGSSFQC 395 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~----pg~~f~~ 395 (477)
..++..+++.++.+.|.+.|.+.|+++... ..+-.+++++++.. +.. ..+..+|++.||.+. |+..=.+
T Consensus 282 ~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlvdl~~~~----~~G--~~a~~~Le~~gI~~Nkn~iP~d~~~~ 355 (416)
T d1dfoa_ 282 EFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKN----LTG--KEADAALGRANITVNKNSVPNDPKSP 355 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT----CCH--HHHHHHHHHTTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCceeEEEecccC----CCH--HHHHHHHHHcCeEEeCCcCCCCCCCC
Confidence 235566777888999999999999998742 22346788987521 111 345677889999864 3322112
Q ss_pred CCCCEEEEEecc-----CCHHHHHHHHHHHHHHHhhhh
Q 011801 396 TEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 396 ~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~~~~ 428 (477)
..+..+||+... +.+++++++.+-|.++++...
T Consensus 356 ~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~ 393 (416)
T d1dfoa_ 356 FVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSIN 393 (416)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence 235679999854 467999999999999997533
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.67 E-value=7.4e-15 Score=142.00 Aligned_cols=276 Identities=15% Similarity=0.234 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEEec
Q 011801 90 EFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPVHC 165 (477)
Q Consensus 90 ~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v~~ 165 (477)
.|.+.+|..-+ .+..+++++++.|+..++..++++||.|+++.+.|.+.... ++.. |+++..++.
T Consensus 2 aLE~~la~Leg----------~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~-gi~~~~~d~ 70 (331)
T d1pffa_ 2 ALEGKIAKLEH----------AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF-GVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT-TCEEEEECT
T ss_pred HHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhc-CeEEEEecc
Confidence 47788888865 46788899999999999999999999999999999875544 3444 999887764
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHH-HhcCeEEEecccccccccCCCCcc
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFI-NDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~-~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
. |.+.+++++++ +++.|++..|+||+..+.+ ++.+++++ +++|+.+|+|..++..++-.+
T Consensus 71 ~-------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~p--- 131 (331)
T d1pffa_ 71 A-------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTNP--- 131 (331)
T ss_dssp T-------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCCG---
T ss_pred c-------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeeccccccccccc---
Confidence 3 56778877754 8999999999999999999 66666664 578999999999974322221
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHH-hc-c-cCCCchHHHHHHHHhcCChhhHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRK-MS-S-FGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~-~~-~-~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
+ ..+..++++|++|.++ ....-.|.++.+++........ .. . ...+++...+.+.+-|++
T Consensus 132 ----l------~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T------ 195 (331)
T d1pffa_ 132 ----L------DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT------ 195 (331)
T ss_dssp ----G------GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH------
T ss_pred ----c------ccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH------
Confidence 1 1234588999999985 2235557777755554443322 22 2 233666776776666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CC-eEecC----------------CceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV-GI-NCLKS----------------NAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~-gi-~~~~~----------------~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+..+.++..++...+.+.|+++ .+ ++.-| .+|-.+.+.+... +-..++++.
T Consensus 196 -l~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~----------~~~~~f~d~ 264 (331)
T d1pffa_ 196 -LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGL----------EKAKKVLDN 264 (331)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH----------HHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccH----------HHHHHHHHh
Confidence 3344556667777888888876 33 22211 1233345556531 122345555
Q ss_pred cCeEEeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQC-------------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~-------------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
..+. ..|.+++. -.++.+|++++. |+.+.+++.|+++++.
T Consensus 265 l~lf-~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl---E~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 265 CHVV-SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC---ENVQDIIDDLKQALDL 329 (331)
T ss_dssp CSSS-EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHT
T ss_pred CCcc-eecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee---CCHHHHHHHHHHHHHH
Confidence 4431 22333332 125689999995 5566667777777754
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.67 E-value=8.2e-16 Score=153.63 Aligned_cols=287 Identities=10% Similarity=0.033 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh------cCCCCeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL------ANPGDAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l------~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
..+.|+.+|++++ .++++|++|+++|+++..++... ..+|+.|++.+-.++......... +.++.
T Consensus 72 ~e~~R~~iA~llg--------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~ 142 (404)
T d1qz9a_ 72 SERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG-LADML 142 (404)
T ss_dssp HHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh-hheee
Confidence 3578888888887 78999999999999998876532 367888888877665443222222 22221
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+. ...++.+.+++++.+ ++++|.++..+|.||+.++ +++|+++|+++++.+++|.+++. +.-
T Consensus 143 ~~~~~~--~~~~~~~~~~~~i~~------~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~---g~~ 208 (404)
T d1qz9a_ 143 QQGYTL--RLVDSPEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA---GAV 208 (404)
T ss_dssp CSSCEE--EEESSGGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTS
T ss_pred eeceec--cccccchhHHHhcCC------CceEEEEecccccccceec---HHHHhccccccccceeEEeeccc---ccc
Confidence 111111 113456777777643 8999999999999999999 88899999999999999999973 322
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh-------------------------cc
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-------------------------SS 296 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-------------------------~~ 296 (477)
+ ..+... +..+++.|.+|.+..|..-+|+++..+..... +... ..
T Consensus 209 ~-~~~~~~--------~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (404)
T d1qz9a_ 209 P-VDLHQA--------GADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEPSNGIARYL 278 (404)
T ss_dssp C-CCHHHH--------TCSEEEECSSSTTCCCTTCCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGC
T ss_pred c-cccccc--------cceEEEEechhhcccCCceEEEEEechhhhhh-CCccccccCCccccccccccccccccchhhh
Confidence 2 333332 33467789999875454456777775443211 1000 00
Q ss_pred cCCCchHHHH---HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHh-hCCCeEecCC-----ceEEEEeeccchhhcc
Q 011801 297 FGLVSSQTQY---LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLE-QVGINCLKSN-----AGLFFWMDLRHLLKEK 367 (477)
Q Consensus 297 ~~~vs~~~q~---~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~-~~gi~~~~~~-----~g~~~~~~l~~~~~~~ 367 (477)
.+..+..... .....+.... ...+++....+......+.+.+. ..|+++..+. +| .+.+.+++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~-~vsf~~~~~---- 351 (404)
T d1qz9a_ 279 CGTQPITSLAMVECGLDVFAQTD--MASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS-HVSFEHPEG---- 351 (404)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS-EEEEECTTH----
T ss_pred hhhccchhHHHHHHHHHHHHHhh--HHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceee-EEEEecCCH----
Confidence 0112222222 2223333322 12233333334444344444443 3477776432 33 455555531
Q ss_pred CchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhh
Q 011801 368 TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 368 ~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~ 426 (477)
.++.+. |.+.||.+.. ..++.+||+|+. .|++|++.+++.|++++++
T Consensus 352 -----~~v~~~-L~~~gi~~~~------r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 352 -----YAVIQA-LIDRGVIGDY------REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp -----HHHHHH-HHTTTEECEE------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHH-HHHCCCEEee------cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 134444 4577996531 135789999963 4899999999999999987
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2.3e-15 Score=153.60 Aligned_cols=324 Identities=15% Similarity=0.178 Sum_probs=195.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCe---------EEEcCCCccchHHH
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDA---------FLVPSPYYAAFDRD 151 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~---------vlv~~P~y~~~~~~ 151 (477)
.|...++..+|+++++++++ .+.+++++++++|+.+++..++++||. +.....+|......
T Consensus 69 ~Y~~~~~~~~le~~~a~l~G----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (467)
T d2v1pa1 69 AFSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHTC----------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred hhcCCchHHHHHHHHHHHHC----------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHH
Confidence 57777778899999999986 467889999999999999998766654 34444444444444
Q ss_pred HhhhCCcEEEEEeccCC--------CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCc-ccCCCHHHHHHHHHHHHh
Q 011801 152 LSWRTGVQIVPVHCDIS--------NNFKITREALEAAYERAQEASINIKGLIITNPSNPL-GTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 152 ~~~~~g~~~~~v~~~~~--------~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPt-G~~~~~~~l~~l~~~~~~ 222 (477)
+... |..+..++.+.. ....+|+++|++++++.... .++++++.+.+|.. |.+++.+.+++|.++|++
T Consensus 139 ~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG--GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHc-CCeeeecccccccccccccccccCCCHHHHHHHHhhcCcc--ccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 4544 999888876532 13468999999999864322 56777888887754 688899999999999999
Q ss_pred cCeEEEecccccccc-------cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhc
Q 011801 223 KNIHLVCDEIYAATV-------FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMS 295 (477)
Q Consensus 223 ~~~~lI~De~y~~~~-------~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~ 295 (477)
||+++|+|+++.... ..+....++.++..+. .....++..|.+|.++. ...|+++..++.+....+...
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~d~~s~s~~K~~~~--~~gg~i~~~~~~~~~~~~~~~ 291 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET--YKYADMLAMSAKKDAMV--PMGGLLCMKDDSFFDVYTECR 291 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH--GGGCSEEEEESSSTTCC--SSCEEEEECSGGGHHHHHHHH
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhh--cccCCEEEecCCCCCCC--CCceeEEecchhhhhHHHhhc
Confidence 999999999974210 0011112333322211 11233566788898763 446778877665544332211
Q ss_pred ----------ccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchh-
Q 011801 296 ----------SFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLL- 364 (477)
Q Consensus 296 ----------~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~- 364 (477)
.++..+.....++...+..... .++++ +..++.+++.+.|.+.++.+.+.... .+.++.....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~~~~l~~~L~~~~~~v~~~~~~-~~~~~~~~~~~ 365 (467)
T d2v1pa1 292 TLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWLA----YRIAQVQYLVDGLEEIGVVCQQAGGH-AAFVDAGKLLP 365 (467)
T ss_dssp HHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC-HHHHH----HHHHHHHHHHHHHHHTTCCEEEECSS-CEEEEHHHHST
T ss_pred ccccccccCcchhhhHHHHHHHHHHHhHHhhh-HHHHH----HHHHHHHHHHHHHHhcCCcccCCCcc-ceeecchhhcC
Confidence 1111222222232222221110 22222 23456677888898888766543332 2222222111
Q ss_pred --hccCchHHHHHHHHHHHhcCeEEeCCCCC-----------CCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHhhhh
Q 011801 365 --KEKTLEGEIALWRTIVNDVKLNVSPGSSF-----------QCTEPGWFRVCFAN--MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 365 --~~~~~~~e~~l~~~ll~~~gI~v~pg~~f-----------~~~~~~~~Rl~~~~--~~~e~l~~~l~~l~~~~~~~~ 428 (477)
....+... .+...++.+.||.......+ .+..+..+|+++.. .++|++|.++++|++++++.+
T Consensus 366 ~~~~~~~~~~-~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~ 443 (467)
T d2v1pa1 366 HIPADQFPAQ-ALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp TSCGGGCHHH-HHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CcchhhhhhH-HHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11122222 35566677778854321110 11234689998853 389999999999999997633
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.67 E-value=7.8e-15 Score=149.34 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=108.4
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcE--EEEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQ--IVPV 163 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~--~~~v 163 (477)
.-+.++++.+|++++. .+.+++++|+++++.+++.++++|||.|+++.-+|...........+.. +..+
T Consensus 66 ~~i~eae~~~A~~~ga---------~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~ 136 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNA---------DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQT 136 (462)
T ss_dssp THHHHHHHHHHHHTTC---------SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHHHhCC---------CeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeec
Confidence 3478999999999871 2345666778888888899999999999999999988766544332444 3444
Q ss_pred eccCCCC-cc-----cCHHHHHHHHHH---HHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 164 HCDISNN-FK-----ITREALEAAYER---AQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 164 ~~~~~~~-f~-----i~~~~l~~~~~~---~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
++++.+. .. ++.+.+++...+ ....+.+++.+++...+|-.|.+.+ +++|+++|+++|++|++|++++
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~ 213 (462)
T d1c4ka2 137 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWV 213 (462)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTC
T ss_pred ccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhh
Confidence 4443221 12 233333322211 0111223444444444467899999 8889999999999999999997
Q ss_pred ccccCCCCc-ccHHHhhhhccCCCCcEEEEecCCcccCCCC
Q 011801 235 ATVFSSPKF-TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG 274 (477)
Q Consensus 235 ~~~~~~~~~-~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G 274 (477)
......+.+ .+......+.+...+..+++.|++|.+|.++
T Consensus 214 ~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~ 254 (462)
T d1c4ka2 214 GYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS 254 (462)
T ss_dssp CGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT
T ss_pred ccccccCcCCcchhhccccccccCCccEEEEecCccccccc
Confidence 532211111 1111000000012244688999999998554
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.3e-14 Score=140.31 Aligned_cols=289 Identities=14% Similarity=0.094 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCC-ccc-hHHHHhhhCCcEEEEEecc
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPY-YAA-FDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~-y~~-~~~~~~~~~g~~~~~v~~~ 166 (477)
.+.++.+++.++ .+++.+++++|+|++++.++..+..+||++++..-. |+. +...++.. |.++..+..+
T Consensus 36 ~~~~~~l~~ll~--------~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~-~~~~~~~~~~ 106 (348)
T d1iuga_ 36 LKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLDYP 106 (348)
T ss_dssp HHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHHHHHHHHhC--------CCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhc-Cccccccccc
Confidence 344555555554 356678899999999999999999999999888766 432 22334444 8887777765
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhc--CeEEEecccccccccCCCCcc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDK--NIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~--~~~lI~De~y~~~~~~~~~~~ 244 (477)
.... ++++++ .+.+++.|++++..+.||...+ +++|.+.|+++ +.++++|.+.+ +...+ .
T Consensus 107 ~g~~--~~~~~~---------~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss---~g~~~-i 168 (348)
T d1iuga_ 107 YGDT--PRPEDV---------AKEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLVGE-V 168 (348)
T ss_dssp TTCC--CCTTTS---------CCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTTBC-C
T ss_pred CCCc--cccccc---------cccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhc---ccccc-c
Confidence 4332 233322 1348889999999999999999 66677777676 47888999887 43322 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCccc-CCCCceEEEEEeCCHHHHHH------------HH---HhcccCCCchHHHHHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDM-GLPGFRVGIVYSFNDTVVNC------------GR---KMSSFGLVSSQTQYLL 308 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~------------~~---~~~~~~~vs~~~q~~~ 308 (477)
.+. ..+..+++.|-.|.+ |.|| +|+++.+++.+... .. +-..+++.+....+++
T Consensus 169 ~~d--------~~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l 238 (348)
T d1iuga_ 169 ALE--------AMGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAV 238 (348)
T ss_dssp CSG--------GGTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred ccc--------cccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHH
Confidence 211 123446778999998 7777 78998876654321 11 0122334555555555
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCc-eEEEEeeccchhhccCchHHHHHHHHHHHhcCeEE
Q 011801 309 ASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNA-GLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387 (477)
Q Consensus 309 ~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~-g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v 387 (477)
...|+... +. ..+..++.+.+++.+...++..|+...+... .-.+.+.+|...+. .++. ..++++||.+
T Consensus 239 ~~aL~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~~------~~~~-~~l~~~gi~i 308 (348)
T d1iuga_ 239 AAVLEEVL--PR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPY------ARVK-EAFAQRGAVI 308 (348)
T ss_dssp HHHHHHHG--GG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCH------HHHH-HHHHTTTEEC
T ss_pred HHHHHHHH--HH-HhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCCH------HHHH-HHHHHCCeEE
Confidence 55554210 11 2222333333445555566667887654221 11355677754332 1344 4456789999
Q ss_pred eCCCCCCCCCCCEEEEEec-cCCHHHHHHHHHHHHHHHhh
Q 011801 388 SPGSSFQCTEPGWFRVCFA-NMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 388 ~pg~~f~~~~~~~~Rl~~~-~~~~e~l~~~l~~l~~~~~~ 426 (477)
.+|. ++.....|||+.- ..++++++.+++.|++++++
T Consensus 309 ~~G~--~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 309 AGGQ--GPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp EECC--GGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EcCc--cccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8884 4444568999764 45899999999999999876
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.1e-14 Score=147.26 Aligned_cols=324 Identities=11% Similarity=0.040 Sum_probs=209.2
Q ss_pred ccCCCCCcHHHHHHHHHHHhcccCCCCccC-CCcEEEeCChHHHHHHHHHHhc-----------C-CCCeEEEcCCCccc
Q 011801 81 IFQDYHGLPEFRQAVAKFMGKGRGGRVTFD-PDRIVMGGGATGANELIMFCLA-----------N-PGDAFLVPSPYYAA 147 (477)
Q Consensus 81 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~~~i~~t~G~t~al~~i~~~l~-----------~-~Gd~vlv~~P~y~~ 147 (477)
.+..++...++.+.+.+++.+..|.+.... ...-.+|+|+|+|+.+.+.+.. . ....+++....+..
T Consensus 84 ~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s 163 (450)
T d1pmma_ 84 DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQIC 163 (450)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHH
T ss_pred CcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHH
Confidence 343445567899999999988877432211 1236899999999998886642 1 22357777778888
Q ss_pred hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHH---HHHhcC
Q 011801 148 FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVS---FINDKN 224 (477)
Q Consensus 148 ~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~---~~~~~~ 224 (477)
+...++.. |+++..|++++ .++.+|+++|++++++ ++.+|+.+.++|.||.+-+.+++.+|++ .|+++|
T Consensus 164 ~~Kaa~~~-gi~~~~v~~~~-~~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~ 235 (450)
T d1pmma_ 164 WHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 235 (450)
T ss_dssp HHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHc-CCCceEeeecC-CCCcCcHHHHHHHhhh------CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccC
Confidence 88888887 99999999875 4689999999998865 7888999999999999999877666654 467899
Q ss_pred eEEEecccccccc--cCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------
Q 011801 225 IHLVCDEIYAATV--FSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM-------- 294 (477)
Q Consensus 225 ~~lI~De~y~~~~--~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~-------- 294 (477)
+++++|.+|+++. |..+...-... ......+..|.+|.++ ....+||++..++.........
T Consensus 236 i~lHVDAA~gG~~~p~~~~~~~~~~~-------~~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~ 307 (450)
T d1pmma_ 236 IDMHIDAASGGFLAPFVAPDIVWDFR-------LPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQ 307 (450)
T ss_dssp CCEEEECTTGGGTHHHHCTTCCCSTT-------STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEE
T ss_pred cEEEeehhhccceeeeechhhhhhhc-------ccceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCC
Confidence 9999999998753 23222110000 2244567789999875 5667999999766432211110
Q ss_pred -cccCC-Cc-----hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC---Cce-EEEEeeccc
Q 011801 295 -SSFGL-VS-----SQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS---NAG-LFFWMDLRH 362 (477)
Q Consensus 295 -~~~~~-vs-----~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~---~~g-~~~~~~l~~ 362 (477)
..+.. .+ ...+++....+... -+++..++..+..+++.+.|++. ++++..+ ..+ ..+.+++.+
T Consensus 308 ~~~~~~~~sr~~~~~~~~~~~l~~~G~~-----G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~ 382 (450)
T d1pmma_ 308 IGTFAINFSRPAGQVIAQYYEFLRLGRE-----GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKD 382 (450)
T ss_dssp EEECCSCCSCBSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECT
T ss_pred cCCCcccCccchHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCC
Confidence 01110 11 12233333333332 24566677778889999999988 4666532 222 234455543
Q ss_pred hhhccCchHHHHHHHHHHHhcCeEEeCCCCCC--CCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhhc
Q 011801 363 LLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQ--CTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDKE 429 (477)
Q Consensus 363 ~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~--~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~~ 429 (477)
.. ...+. ..++.. .|.+.|..|. ...+. ......+|+++... +++.++.+++.|++++++.++
T Consensus 383 ~~-~~~~~-~~~l~~-~L~~~Gw~v~-~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 383 GE-DPGYT-LYDLSE-RLRLRGWQVP-AFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp TC-CCSSC-HHHHHH-HHHTTTCBCC-EEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cCCCC-HHHHHH-HHHHcCCeee-ccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 21 11112 123444 4456787653 11111 12345799999764 899999999999999987543
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.8e-14 Score=142.08 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=148.2
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
...|.+.+|+.-+ .+..+++++++.|+..++.+++++||.|++....|.+....+.. ..|+++..+.
T Consensus 60 ~~~le~~la~LEg----------~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d 129 (391)
T d1cl1a_ 60 HFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 129 (391)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHhC----------CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccccccccc
Confidence 4466666666554 46789999999999999999999999999999999886655432 2388887776
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccccccccCCCC
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y~~~~~~~~~ 242 (477)
.. |.+++++++++ ++++|++..|+||+..+.+ +++++++|++ +|+++|+|..++..++-.
T Consensus 130 ~~-------d~~~~~~~i~~------~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~~-- 191 (391)
T d1cl1a_ 130 PL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK-- 191 (391)
T ss_dssp TT-------CGGGGGGTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC--
T ss_pred Cc-------ccccccccccc------ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhhc--
Confidence 32 45677776653 8999999999999999999 6777777755 599999999997432221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc-ccCCCchHHHHHHHHhcCChhhHHH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS-SFGLVSSQTQYLLASMLSDDEFVDN 320 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~-~~~~vs~~~q~~~~~~L~~~~~~~~ 320 (477)
++ ..+..+++.|++|.++=.| .=.|.++.+++.......... ....+++...+++.+-|++-.
T Consensus 192 --Pl---------~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~---- 256 (391)
T d1cl1a_ 192 --AL---------DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG---- 256 (391)
T ss_dssp --GG---------GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHH----
T ss_pred --cc---------ccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHH----
Confidence 11 1244588999999986222 345777775554443332222 233467788888887777743
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQV 343 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~ 343 (477)
.+.++..++...+.+.|+++
T Consensus 257 ---lR~~~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 257 ---VRLRQHHESSLKVAEWLAEH 276 (391)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHHHHHHhc
Confidence 33445566777788888876
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.6e-14 Score=143.16 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=172.1
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhc---CCCCeEEEcCCCccchH--HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHH
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLA---NPGDAFLVPSPYYAAFD--RDLSWRTGVQIVPVHCDISNNFKITREALEAAY 182 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~---~~Gd~vlv~~P~y~~~~--~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~ 182 (477)
..+++.|++|+|+|+++++++..+. ++||+|++..-.+.+.. ..++.. |.....+...+ .+...+.+.+++++
T Consensus 54 ~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ 131 (382)
T d2bkwa1 54 ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDVVRPLK-IGESVPLELITEKL 131 (382)
T ss_dssp GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEEECCSS-TTSCCCHHHHHHHH
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccc-ccccccccccC-CCCccchhHHHHHh
Confidence 3567789999999999999999986 68999999887654432 233434 77766665332 34457788888877
Q ss_pred HHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh--cCeEEEecccccccccCCCCcccHHHhhhhccCCCCcE
Q 011801 183 ERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND--KNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLI 260 (477)
Q Consensus 183 ~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~--~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~v 260 (477)
.+. +++.++++..+|.||+..+ +..+.+.|++ +++++++|.+.+ ++..+ ..+. ..+..
T Consensus 132 ~~~-----~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~~~~~~~~vDa~qs---~g~~p-id~~--------~~giD 191 (382)
T d2bkwa1 132 SQN-----SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCS---IGCEE-FEFD--------EWGVD 191 (382)
T ss_dssp HHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTT---TTTSC-CCTT--------TTTCS
T ss_pred hhc-----cchheeeeecccccccccc---chhhhhhccccccceeeeeecccc---ccccc-cccc--------ccCee
Confidence 642 7889999999999999999 4555555544 469999999997 43332 2221 23455
Q ss_pred EEEecCCccc-CCCCceEEEEEeCCHHHHHHHHHh---------------------------cccCCCchHHHHHHHHhc
Q 011801 261 HIIYSLSKDM-GLPGFRVGIVYSFNDTVVNCGRKM---------------------------SSFGLVSSQTQYLLASML 312 (477)
Q Consensus 261 iiv~SlSK~~-g~~G~RvG~i~~~~~~i~~~~~~~---------------------------~~~~~vs~~~q~~~~~~L 312 (477)
+++.|-.|.+ |.+| +|+++..++.+....... ...++.+...-+++...|
T Consensus 192 ~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL 269 (382)
T d2bkwa1 192 FALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVAL 269 (382)
T ss_dssp EEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred EEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHH
Confidence 7888999998 5566 899998666543321110 111233333444444444
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec---CC--ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeE
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK---SN--AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLN 386 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~---~~--~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~ 386 (477)
+.- .+.-+....++.++..+.+.+.+.+. ++.... .. ..-.+.+.+++. + ++ ..+++++||.
T Consensus 270 ~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~--------~-~~-~~~L~~~gi~ 337 (382)
T d2bkwa1 270 KEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADP--------P-DV-IAFLKSHGVV 337 (382)
T ss_dssp HHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCH--------H-HH-HHHHHHTTEE
T ss_pred HHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCH--------H-HH-HHHHHHCCeE
Confidence 321 12223444455556667777777653 333221 11 111234555532 1 23 3456788999
Q ss_pred EeCCCCCCCCCCCEEEEE-eccC-CHHHHHHHHHHHHHHHh
Q 011801 387 VSPGSSFQCTEPGWFRVC-FANM-DDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 387 v~pg~~f~~~~~~~~Rl~-~~~~-~~e~l~~~l~~l~~~~~ 425 (477)
+..|.... .+++.|||+ ++.. ++++++.+++.|..+..
T Consensus 338 i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~ 377 (382)
T d2bkwa1 338 IAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL 377 (382)
T ss_dssp CBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred EECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence 99884321 245789998 6543 45666666666655443
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.65 E-value=6e-14 Score=138.39 Aligned_cols=278 Identities=12% Similarity=0.185 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v 163 (477)
...|.+.+|+.-+ .+..+++++++.|+..++.+++++||.|++.+..|.+.... +.. .|+++..+
T Consensus 61 ~~~le~~la~LEg----------~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~gi~~~~~ 129 (394)
T d1e5ea_ 61 VSNLEGKIAFLEK----------TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFI 129 (394)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEE
T ss_pred HHHHHHHHHHHhC----------CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhc-cceeeecc
Confidence 3466677776654 46788889999999999999999999999999999775543 333 38888888
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH-hcCeEEEecccccccccCCCC
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN-DKNIHLVCDEIYAATVFSSPK 242 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~-~~~~~lI~De~y~~~~~~~~~ 242 (477)
+.. |.+++++++++ ++|+|++..|+||+..+.+ ++++++.+. ++|+.+|+|..++.-++..
T Consensus 130 d~~-------d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~~-- 191 (394)
T d1e5ea_ 130 NTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN-- 191 (394)
T ss_dssp CTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC--
T ss_pred CCC-------CHHHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccCC--
Confidence 753 45778887754 8999999999999999999 777777555 5689999999997432221
Q ss_pred cccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHH-HHhc-cc-CCCchHHHHHHHHhcCChhhH
Q 011801 243 FTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCG-RKMS-SF-GLVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 243 ~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~-~~~~-~~-~~vs~~~q~~~~~~L~~~~~~ 318 (477)
++ ..+..++++|++|.++ -...-.|.++++++.+.... .... .. ..+++...+.+..-|++-.
T Consensus 192 --Pl---------~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~-- 258 (394)
T d1e5ea_ 192 --PV---------DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN-- 258 (394)
T ss_dssp --GG---------GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--
T ss_pred --ch---------hcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHH--
Confidence 11 1244588999999885 33355677777555443322 2222 22 3467788888888887743
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-C-eEec-----------------CCceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQVG-I-NCLK-----------------SNAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~-----------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
-+.++..++...+.+.|+++. + .+.- ..+|++. +.+.... +-..++
T Consensus 259 -----lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~s-f~~~~~~---------~~a~~f 323 (394)
T d1e5ea_ 259 -----IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMIT-FILKSGF---------EGAKKL 323 (394)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEE-EEETTHH---------HHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeee-eeccCCH---------HHHHHH
Confidence 334555677788888888863 2 2221 1244443 4444321 223455
Q ss_pred HHhcCeEEeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 380 VNDVKLNVSPGSSFQC-------------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~-------------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++..++ +..+.+++. -.++.|||+++. |+.+.+++.|.++++.
T Consensus 324 ~~~l~l-~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl---Ed~eDLi~Dl~qAl~~ 391 (394)
T d1e5ea_ 324 LDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDA 391 (394)
T ss_dssp HHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHhCCc-cceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHH
Confidence 665554 233444432 125689999995 5556667777766654
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=1.4e-13 Score=136.31 Aligned_cols=280 Identities=13% Similarity=0.154 Sum_probs=179.7
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~ 164 (477)
...|.+.||..-+ .+..++++++..|+..++..++++||.|+++...|.+....+.. ..|+++..+.
T Consensus 60 ~~~LE~~la~LE~----------~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d 129 (421)
T d2ctza1 60 VDVLEKRLAALEG----------GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecc
Confidence 4566667776654 45688888889999999999999999999999999876654332 2388887765
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+. ..+..+..++ .++|+|++..|+|||..+.+ +++|+++|+++|+.+|+|..++..-+.- .
T Consensus 130 ~~~------~~~~~~~~~~------~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~---~ 191 (421)
T d2ctza1 130 REE------RPEEFLALTD------EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL---R 191 (421)
T ss_dssp TTC------CHHHHHHHCC------TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC---C
T ss_pred ccc------CcchhccccC------CCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceec---c
Confidence 321 2344444443 38999999999999999999 9999999999999999999996211111 1
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHH-------------------------------HHHHH-
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDT-------------------------------VVNCG- 291 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~-------------------------------i~~~~- 291 (477)
++ ..+..++++|++|.++=.| .=.|.|+..++. +.+..
T Consensus 192 Pl---------~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (421)
T d2ctza1 192 PL---------AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARV 262 (421)
T ss_dssp GG---------GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHH
T ss_pred cc---------ccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHH
Confidence 21 2245588999999986333 445666654321 11110
Q ss_pred HHhcc-cCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-C-eEecC-----------------C
Q 011801 292 RKMSS-FGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-I-NCLKS-----------------N 351 (477)
Q Consensus 292 ~~~~~-~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~~-----------------~ 351 (477)
..+.. ...+++...+++..-|+.-. -+.++..+....+.+.|+++. + ++.-| .
T Consensus 263 ~~~~~~G~~~sP~~a~l~~rgl~TL~-------lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~ 335 (421)
T d2ctza1 263 DGLRDQGQALGPFEAWVVLLGMETLS-------LRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp THHHHHCCCCCHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHhccCCCCHHHHHHHhcCCcchh-------hHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCC
Confidence 01112 23467888888888887743 334455666677888888763 3 22211 1
Q ss_pred ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCC-------------------------CCCCEEEEEec
Q 011801 352 AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQC-------------------------TEPGWFRVCFA 406 (477)
Q Consensus 352 ~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~-------------------------~~~~~~Rl~~~ 406 (477)
.|-++.+.+.... +...+.++...+ +..+.+++. -.++.|||+++
T Consensus 336 ~G~~~sf~l~~~~---------~~a~~f~~~L~l-~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvG 405 (421)
T d2ctza1 336 PGAVLTFGLKGGY---------EAAKRFISRLKL-ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG 405 (421)
T ss_dssp CCSEEEEEETTHH---------HHHHHHHHTCSS-SEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC
T ss_pred CceEEEEEecCCH---------HHHHHHHHcCCc-CeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEec
Confidence 2445667776321 233455555554 223333331 12578999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 011801 407 NMDDDTLQVALNRIAAFV 424 (477)
Q Consensus 407 ~~~~e~l~~~l~~l~~~~ 424 (477)
. |+.+.+++.|.+++
T Consensus 406 l---Ed~eDLi~DL~qAL 420 (421)
T d2ctza1 406 L---EHVEDLKAELKEAL 420 (421)
T ss_dssp S---SCHHHHHHHHHHHT
T ss_pred c---CCHHHHHHHHHHhc
Confidence 5 44555677776654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.4e-14 Score=144.04 Aligned_cols=361 Identities=11% Similarity=0.033 Sum_probs=198.0
Q ss_pred CCCCCCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCC
Q 011801 31 FHPTQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGR 106 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~ 106 (477)
|..+.+.+..||+..+ .+.++ .+.+.+++.+..+ .+..........+....+|+.+.+....
T Consensus 33 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~-------------~~~~~~~~~~~~~~~~~la~~l~~~~p~- 98 (425)
T d1sffa_ 33 RVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLK-------------KLSHTCFQVLAYEPYLELCEIMNQKVPG- 98 (425)
T ss_dssp EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTT-------------TCSCCCTTTEECHHHHHHHHHHHHHSSC-
T ss_pred EEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHh-------------hcCCcccccccCcHHHHHHHHHHhhhhh-
Confidence 4445556788998654 45554 4666777665321 1111111111234455566666544210
Q ss_pred CccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC-------------cEEEEEe--ccCCC
Q 011801 107 VTFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVH--CDISN 169 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~--~~~~~ 169 (477)
-..+.+++++++++|++.+++... ..-.+|+...-+|++........+| ......+ ....+
T Consensus 99 --~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (425)
T d1sffa_ 99 --DFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG 176 (425)
T ss_dssp --SSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT
T ss_pred --cccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcccccc
Confidence 113579999999999999987641 2236788888888875543332222 1111222 11111
Q ss_pred CcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHH
Q 011801 170 NFKITREALEAAYERAQEASINIKGLIITNPSNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAE 248 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~ 248 (477)
.......+....+........++.+|++.--....|. ..+++-++.|.++|+++|+++|.||++.++.-.+..+.. +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~--~ 254 (425)
T d1sffa_ 177 ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM--E 254 (425)
T ss_dssp BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG--G
T ss_pred ccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHH--H
Confidence 1111112222222222222335666555422333554 567888999999999999999999999975333333221 1
Q ss_pred hhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcCC---hhhHHHHH
Q 011801 249 VIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLSD---DEFVDNFL 322 (477)
Q Consensus 249 ~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~~---~~~~~~~~ 322 (477)
.. +..+| +-+++|.+| .|+.+|.+++.++ +.+..... .+|+ .++++..++.+.|+- .++ .+++
T Consensus 255 ~~---gv~PD----i~~~gK~l~-gG~P~~av~~~~~-i~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~i~~~~~-~~~~ 323 (425)
T d1sffa_ 255 QM---GVAPD----LTTFAKSIA-GGFPLAGVTGRAE-VMDAVAPGGLGGTYA-GNPIACVAALEVLKVFEQENL-LQKA 323 (425)
T ss_dssp GT---TSCCS----EEEECGGGG-TSSCCEEEEEEHH-HHTTSCTTSBCCSSS-SCHHHHHHHHHHHHHHHHTTH-HHHH
T ss_pred hc---CCCcc----ceecccccC-CCcceEEEEEcHH-HHHhhCCCCCCCCCC-cCHHHHHHHHHHHHHHHHhhh-hhhh
Confidence 11 22344 236789998 8999999999554 43322211 1222 456666666665542 222 1222
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhcc--CchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCE
Q 011801 323 VETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEK--TLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGW 400 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~--~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (477)
....+++ ++.+.+.+++.++...-...|++..+.+....... .......+...+++ .||.+.++... .+.
T Consensus 324 ~~~g~~l---~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~~----~n~ 395 (425)
T d1sffa_ 324 NDLGQKL---KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNV 395 (425)
T ss_dssp HHHHHHH---HHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCE
T ss_pred hhhhhhh---hhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHH-CCCEEeccCCC----CCE
Confidence 2222222 23344444555543322334566667664322111 11122345666665 59998875432 457
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHhhhh
Q 011801 401 FRVCFAN-MDDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 401 ~Rl~~~~-~~~e~l~~~l~~l~~~~~~~~ 428 (477)
+|++.+. +++++++++++++++++++.+
T Consensus 396 i~~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 396 LRILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9998765 499999999999999998754
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=9.7e-14 Score=136.69 Aligned_cols=277 Identities=15% Similarity=0.152 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh---hCCcEEEEEec
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW---RTGVQIVPVHC 165 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~---~~g~~~~~v~~ 165 (477)
..|.+++|..-+ .+..++++++..|+..++ .++.+||.|++....|.+....+.. ..|+++..++
T Consensus 58 ~~lE~~la~LE~----------~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~- 125 (393)
T d1n8pa_ 58 ENLERAVAALEN----------AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN- 125 (393)
T ss_dssp HHHHHHHHHHTT----------CSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-
T ss_pred HHHHHHHHHHhC----------CceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee-
Confidence 455555665543 356677777788987654 6678999999999999876655433 2377665543
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHH----hcCeEEEecccccccccCCC
Q 011801 166 DISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIN----DKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 166 ~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~----~~~~~lI~De~y~~~~~~~~ 241 (477)
.+.++++++++. ++|+|++..|+||+..+.+ +++|+++|+ ++|+.+|+|..++.-.+..+
T Consensus 126 -------~~~~~~~~~i~~------~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~P 189 (393)
T d1n8pa_ 126 -------DLLNDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYISNP 189 (393)
T ss_dssp -------SHHHHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG
T ss_pred -------cchHHHHHHhhh------hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccCCc
Confidence 134667776643 8999999999999999999 677777776 78999999999974322211
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccC-CCCceEEEEEeCCHHHHHHHHHh-cccC-CCchHHHHHHHHhcCChhhH
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMG-LPGFRVGIVYSFNDTVVNCGRKM-SSFG-LVSSQTQYLLASMLSDDEFV 318 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g-~~G~RvG~i~~~~~~i~~~~~~~-~~~~-~vs~~~q~~~~~~L~~~~~~ 318 (477)
+ ..+..+++.|++|.++ ....-.|.|+..++.+...++.. ..++ .+++...+.+..-|++-+
T Consensus 190 -------l------~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~-- 254 (393)
T d1n8pa_ 190 -------L------NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH-- 254 (393)
T ss_dssp -------G------GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--
T ss_pred -------h------hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchh--
Confidence 1 2244588999999985 23366788877776665544433 2233 467788888888887743
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--CCeE-e-c-----------------CCceEEEEeeccchhhccCchHHHHHHH
Q 011801 319 DNFLVETSKRLAKRHHNFTKGLEQV--GINC-L-K-----------------SNAGLFFWMDLRHLLKEKTLEGEIALWR 377 (477)
Q Consensus 319 ~~~~~~~~~~l~~r~~~l~~~L~~~--gi~~-~-~-----------------~~~g~~~~~~l~~~~~~~~~~~e~~l~~ 377 (477)
.+.++..+....+.+.|+.. .+.. . + ..+|-.+.+++.... +...
T Consensus 255 -----lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~---------~~~~ 320 (393)
T d1n8pa_ 255 -----LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA---------EAAS 320 (393)
T ss_dssp -----HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH---------HHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCH---------HHHH
Confidence 23344455666777778653 1221 1 1 012445666775321 1223
Q ss_pred HHHHhcCeEEeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 378 TIVNDVKLNVSPGSSFQC-------------------------TEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 378 ~ll~~~gI~v~pg~~f~~-------------------------~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
++++...+. ..+.+++. ..++.|||+++. |+.+.+++.|.+++++
T Consensus 321 ~f~~~l~l~-~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl---E~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 321 KFASSTRLF-TLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI---EDTDDLLEDIKQALKQ 390 (393)
T ss_dssp HHHHHCSSS-EECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcc-eecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHH
Confidence 344443431 12222221 124689999995 6677778888888765
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.60 E-value=3.4e-13 Score=133.72 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=185.4
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
..+|++.+|+|++ ....+.++++|.|+.+++.++ .++||.|++|..+|+.....+... |.+++.++++
T Consensus 36 v~~fE~~~a~~~g----------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~-g~~p~~~d~~ 104 (384)
T d1b9ha_ 36 VNSFEREFAAHHG----------AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAVTVPVDVD 104 (384)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccccc-cccccccccc
Confidence 6899999999986 457889999999999999997 689999999999999988888776 9999999886
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccc-cCCCCccc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATV-FSSPKFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~-~~~~~~~s 245 (477)
. .++.+|++.+++.+.+ ++++|+++ +..|...+ +.++.++|+++++.||+|.+++... +.+. .
T Consensus 105 ~-~~~~~d~~~~~~~i~~------~tk~i~~~---~~~g~~~d---~~~i~~~~~~~~i~lieD~a~a~ga~~~g~---~ 168 (384)
T d1b9ha_ 105 A-ATYNLDPEAVAAAVTP------RTKVIMPV---HMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGK---R 168 (384)
T ss_dssp T-TTCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---E
T ss_pred c-cccccchhhhcccccc------cccccccc---cccccccc---cccchhhhhhhhhhhhhhhceecccccCCE---e
Confidence 4 5788999999987644 88887654 77888877 7778888889999999999997321 1111 1
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHhcccC-------------------CCchHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFG-------------------LVSSQTQY 306 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~-------------------~vs~~~q~ 306 (477)
+.. ..+-.++-.+.+|.++ ...-|.|+++++.+.+.++.+...+ -++.+...
T Consensus 169 ~g~-------~g~~~~~Sf~~~K~i~--~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aa 239 (384)
T d1b9ha_ 169 VGE-------LDSIATFSFQNGKLMT--AGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSAS 239 (384)
T ss_dssp GGG-------SSSCEEEECCTTSSSC--SSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHH
T ss_pred cCc-------ccccceeccccccccc--ccccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhh
Confidence 111 1233344344578875 3346888888877766655432211 13333333
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec----C--CceEEEEeeccchhhccCchHHHHHHHHH
Q 011801 307 LLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK----S--NAGLFFWMDLRHLLKEKTLEGEIALWRTI 379 (477)
Q Consensus 307 ~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~----~--~~g~~~~~~l~~~~~~~~~~~e~~l~~~l 379 (477)
++..-|..- +++++ +-+++.+++.+.|.+. ++.... . ...++..+.++.... +.-.++.+.|
T Consensus 240 ig~~qL~~l---d~~~~----~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Rd~l~~~L 308 (384)
T d1b9ha_ 240 VLRAQLARL---DEQIA----VRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----ERRNALVDRL 308 (384)
T ss_dssp HHHHHHTTH---HHHHH----HHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----HHHHHHHHHH
T ss_pred hhhhhhhhc---ccchh----hhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc----ccHHHHHHHH
Confidence 333334331 33332 2234556666777765 443221 1 111233344442111 1111355554
Q ss_pred HHhcCeEEeCCCCCCCC------------C-----------------CCEEEEEec-cCC-HHHHHHHHHHHHHHHhh
Q 011801 380 VNDVKLNVSPGSSFQCT------------E-----------------PGWFRVCFA-NMD-DDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 380 l~~~gI~v~pg~~f~~~------------~-----------------~~~~Rl~~~-~~~-~e~l~~~l~~l~~~~~~ 426 (477)
++.||.+++. |.+. . ...+.|-+. .++ +++++..++.|++++.+
T Consensus 309 -~~~GI~~~~~--y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 309 -VEAGLPAFAA--FRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp -HHTTCCEEEC--CCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred -HHCCCCeeee--CcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 5679987654 2110 0 124666553 355 57999999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.55 E-value=2.6e-13 Score=136.31 Aligned_cols=338 Identities=14% Similarity=0.131 Sum_probs=187.8
Q ss_pred CCCCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCC
Q 011801 32 HPTQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRV 107 (477)
Q Consensus 32 ~~~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 107 (477)
..+.+.+.+||+..+ .+.+ +.|.+.+++++.-+ ....+.. ...+...+++.+.+..+
T Consensus 46 l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~-------------~~~~~~~---~~~~~~~la~~~~~~~~--- 106 (427)
T d2gsaa_ 46 AWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME-------------KGTSFGA---PCALENVLAEMVNDAVP--- 106 (427)
T ss_dssp EEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHT-------------TCSCCSS---CCHHHHHHHHHHHHHST---
T ss_pred EEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHH-------------hcCcccc---chhHHHHHHHHHHhhCC---
Confidence 335667788998554 4444 34666666655311 1111111 13455666777665432
Q ss_pred ccCCCcEEEeCChHHHHHHHHHHhc--CCCCeEEEcCCCccchHHHHhhhCC-------c------------EEEEEecc
Q 011801 108 TFDPDRIVMGGGATGANELIMFCLA--NPGDAFLVPSPYYAAFDRDLSWRTG-------V------------QIVPVHCD 166 (477)
Q Consensus 108 ~~~~~~i~~t~G~t~al~~i~~~l~--~~Gd~vlv~~P~y~~~~~~~~~~~g-------~------------~~~~v~~~ 166 (477)
..+.+++++++++|++.+++... .....|+...-+|++....+...+| . +...++
T Consensus 107 --~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-- 182 (427)
T d2gsaa_ 107 --SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-- 182 (427)
T ss_dssp --TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC--
T ss_pred --ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC--
Confidence 34689999999999999997642 2346788888888765322211111 1 111222
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.-|++++++.+++. ..++.+|++. | ..-.|. ..+.+-+++|.++|+++|+++|+||++.++ ..+.. .
T Consensus 183 -----~~~~~~le~~~~~~---~~~iaavi~E-pi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~-~ 251 (427)
T d2gsaa_ 183 -----YNDLEAVKALFAEN---PGEIAGVILE-PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYG-G 251 (427)
T ss_dssp -----TTCHHHHHHHHTTS---TTTEEEEEEC-SSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT-C
T ss_pred -----cchHHHHHHHHHhC---CCCeEEEEEc-CCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eeccc-c
Confidence 12688888887642 3367776664 5 233465 456677999999999999999999999875 22322 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh------cccCCCchHHHHHHHHh---cCCh
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM------SSFGLVSSQTQYLLASM---LSDD 315 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~------~~~~~vs~~~q~~~~~~---L~~~ 315 (477)
. .+.. +..+| ++ +++|.+| .|+.+|.+++.++ +.+..... .+| ..++++.+++.+. +...
T Consensus 252 ~-~~~~---gi~PD--i~--~~gK~lg-gG~p~~a~~~~~~-i~~~~~~~~~~~~~~T~-~gnpla~AAala~Le~i~~~ 320 (427)
T d2gsaa_ 252 V-QEKF---GVTPD--LT--TLGKIIG-GGLPVGAYGGKRE-IMQLVAPAGPMYQAGTL-SGNPLAMTAGIKTLELLRQP 320 (427)
T ss_dssp H-HHHT---TCCCS--EE--EECGGGG-TTSCCEEEEECHH-HHTTBTTTSSBCCCCTT-TTCHHHHHHHHHHHHHHTST
T ss_pred h-HHhc---CCCHH--HH--hhhhccC-CCcceeeeeehHH-HHHHhcccCCCcCCCCC-CCCchhhHHHHHhhHHhhhh
Confidence 2 2221 22344 23 5679998 8999999988554 44333221 112 2455555555444 3344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEe-cCCceEEEEe--ecc-ch---hhccCchHHHHHHHHHHHhcCeEEe
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQVGINCL-KSNAGLFFWM--DLR-HL---LKEKTLEGEIALWRTIVNDVKLNVS 388 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~-~~~~g~~~~~--~l~-~~---~~~~~~~~e~~l~~~ll~~~gI~v~ 388 (477)
+. .+.+++..+++++..+ +..++.++... ...+|++... +-+ .. ......+....++..+++ .||.+.
T Consensus 321 ~l-~~~~~~~g~~l~~~L~---~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~ 395 (427)
T d2gsaa_ 321 GT-YEYLDQITKRLSDGLL---AIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLA 395 (427)
T ss_dssp TH-HHHHHHHHHHHHHHHH---HHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECC
T ss_pred hH-HhhhhHHHHHHHHHHH---HHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEEC
Confidence 43 2334444444444333 23334444322 2223443221 111 10 011111111234555664 599998
Q ss_pred CCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhh
Q 011801 389 PGSSFQCTEPGWFRVCFANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 389 pg~~f~~~~~~~~Rl~~~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|+.. ..++ ++++ +++++++++++++++++++
T Consensus 396 p~~~-----~~~~-~~l~-~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 396 PSQF-----EAGF-TSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp SSTT-----SCEE-CCTT-CCHHHHHHHHHHHHHHHTC
T ss_pred CCCC-----ccee-CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 7532 1122 4544 5999999999999999875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.55 E-value=4.4e-12 Score=125.57 Aligned_cols=303 Identities=13% Similarity=0.121 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCc--EEE-eCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH----------hh
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDR--IVM-GGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL----------SW 154 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~--i~~-t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~----------~~ 154 (477)
..++.....+...+.++ .+++. +=+ ..+++.|+..++.+|++|||+|+..+....++..-- ..
T Consensus 75 iD~iE~la~~ra~~lF~----~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~ 150 (470)
T d1rv3a_ 75 IDELETLCQKRALQAYG----LDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATS 150 (470)
T ss_dssp HHHHHHHHHHHHHHHTT----CCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHHhC----CChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCccccc
Confidence 44555445455555554 33322 212 346678999999999999999999887766553221 11
Q ss_pred hCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEeccccc
Q 011801 155 RTGVQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYA 234 (477)
Q Consensus 155 ~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~ 234 (477)
. ..+.+.++++.+ +..+|.+++++..++. ++|+|++..-.+|- .++ .+++.++|.+.|.+|++|-++.
T Consensus 151 ~-~~~~~~y~v~~~-~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~ 218 (470)
T d1rv3a_ 151 I-FFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIAGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHI 218 (470)
T ss_dssp H-HSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTT
T ss_pred c-eeEeeEEEEecc-cCcccHHHHHHHHHhh-----CcceEeechhhccc--cCC---HHHHHHHHhccCCeEEecchhh
Confidence 1 357788888754 5679999999998876 89987765444442 345 6777777789999999999985
Q ss_pred ccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHhcccCCC
Q 011801 235 ATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKMSSFGLV 300 (477)
Q Consensus 235 ~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~~~~~~v 300 (477)
.....+..+.+.... ..++..|.+|+| +|-|-|.|++.++ .+.+.+.+..-.+..
T Consensus 219 aGLIA~g~~~sPl~~---------aDvvt~tTHKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~q 287 (470)
T d1rv3a_ 219 SGLVVAGVVPSPFEH---------CHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQ 287 (470)
T ss_dssp HHHHHHTSSCCGGGT---------CSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTC
T ss_pred hhhccccccCChhhe---------eeeeeeehhhhc--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCcccc
Confidence 432222222222221 137789999999 7999999998653 244444333222222
Q ss_pred -chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccch-hhccCchHHHHHHH
Q 011801 301 -SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHL-LKEKTLEGEIALWR 377 (477)
Q Consensus 301 -s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~-~~~~~~~~e~~l~~ 377 (477)
++....+++.+..-.+......++..+++.++.+.|.+.|.+.|+++... ..+-.+++++... +.. ..+.
T Consensus 288 ggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g-------~~ae 360 (470)
T d1rv3a_ 288 GGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDG-------GRAE 360 (470)
T ss_dssp CSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCH-------HHHH
T ss_pred ccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcH-------HHHH
Confidence 22111111111111111111235566777888899999999999988642 2334678888642 111 2456
Q ss_pred HHHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHh
Q 011801 378 TIVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 378 ~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~ 425 (477)
.+|++.||.+. |+.. .+..+..+||+... +.++++.++.+-|.++++
T Consensus 361 ~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 361 KVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcEECCCcCCCCC-CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77888999764 5542 22335679999843 468999999999988875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.54 E-value=1e-12 Score=129.79 Aligned_cols=302 Identities=15% Similarity=0.135 Sum_probs=180.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC----cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHH--------hhh
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD----RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDL--------SWR 155 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~----~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~--------~~~ 155 (477)
..++.....+...+.++ ++.. +|-.- +++.|+..++.+|++|||+|+..++...++..-- ...
T Consensus 71 iD~iE~la~~ra~~lF~----~~~a~w~vNVqp~-SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~ 145 (463)
T d2a7va1 71 VDEIELLCQRRALEAFD----LDPAQWGVNVQPY-SGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT 145 (463)
T ss_dssp CTHHHHHHHHHHHHHTT----CCTTTEEEECCCS-SHHHHHHHHHHHHCCSCEECCC-----------------------
T ss_pred HHHHHHHHHHHHHHHhC----CCchhccCCcccc-ccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccce
Confidence 45665555555555554 3343 34444 4567999999999999999999988876654211 111
Q ss_pred CC--cEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccc
Q 011801 156 TG--VQIVPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIY 233 (477)
Q Consensus 156 ~g--~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y 233 (477)
| .+.+++.+++ .+..+|.+++++..++. ++|+|++..-.+|- .++ .+++.++|.+.|.+|++|-++
T Consensus 146 -g~~~~~~~Y~~d~-~~~~IDyd~~~~~a~~~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH 213 (463)
T d2a7va1 146 -SIFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAH 213 (463)
T ss_dssp ---------CCBCT-TTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGG
T ss_pred -eeEeeeeeeeccC-CCCcCcHHHHHHHHhhc-----CCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhh
Confidence 2 2455555554 35679999999999887 89987776444443 345 677777777999999999998
Q ss_pred cccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCH--------------HHHHHHHHhcccCC
Q 011801 234 AATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFND--------------TVVNCGRKMSSFGL 299 (477)
Q Consensus 234 ~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~--------------~i~~~~~~~~~~~~ 299 (477)
......+.-+.+.... ..++..|.+|+| +|-|.|.|++.++ .+.+.+.+..-.+.
T Consensus 214 ~aGLIA~g~~~sP~~~---------aDvvt~tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~ 282 (463)
T d2a7va1 214 ISGLVAAKVIPSPFKH---------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL 282 (463)
T ss_dssp GHHHHHTTSSCCGGGT---------CSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTT
T ss_pred hhHHhhhhhhcChhhh---------hhhhhchhhhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCccc
Confidence 5432333333332221 136788999999 8999999998652 23333332222222
Q ss_pred C-chHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecC-CceEEEEeeccch-hhccCchHHHHHH
Q 011801 300 V-SSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKS-NAGLFFWMDLRHL-LKEKTLEGEIALW 376 (477)
Q Consensus 300 v-s~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~-~~g~~~~~~l~~~-~~~~~~~~e~~l~ 376 (477)
. ++....+++.+..-.+..+...++..+++.++.+.|.+.|.+.|+++... ..+-.++++++.. +.. ..+
T Consensus 283 qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G-------~~a 355 (463)
T d2a7va1 283 QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDG-------ARA 355 (463)
T ss_dssp CCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCH-------HHH
T ss_pred chhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCCH-------HHH
Confidence 2 22222222222221111122345666777888999999999999988743 2234678898652 221 345
Q ss_pred HHHHHhcCeEEe----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHh
Q 011801 377 RTIVNDVKLNVS----PGSSFQCTEPGWFRVCFAN-----MDDDTLQVALNRIAAFVQ 425 (477)
Q Consensus 377 ~~ll~~~gI~v~----pg~~f~~~~~~~~Rl~~~~-----~~~e~l~~~l~~l~~~~~ 425 (477)
...|++.||.+. |+.. .+..+..+||+... +.++++.++.+-|.+++.
T Consensus 356 e~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 356 ERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCccCCccCCCCC-CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 677888898764 4432 12235679999854 467999999999988875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.4e-13 Score=132.95 Aligned_cols=332 Identities=11% Similarity=0.075 Sum_probs=190.1
Q ss_pred CCCCccccccccc--cccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+..||+..+ .+.+ +.+.+.+++++.-+. ......+....-..++.+.+++..+
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--------- 97 (404)
T d2byla1 37 DVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDK----------LTLTSRAFYNNVLGEYEEYITKLFN--------- 97 (404)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT----------CCCCCTTEEESSHHHHHHHHHHHHT---------
T ss_pred ECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhh----------CCCcccccccchHHHHHHhhhhccc---------
Confidence 4556678998654 3434 456677766653111 0011111111123445555555442
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc----------CCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA----------NPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDI 167 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~----------~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~ 167 (477)
.+.+++++++++|++.+++... .....++...-+|.+.........+ ..+..+|.
T Consensus 98 -~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-- 174 (404)
T d2byla1 98 -YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-- 174 (404)
T ss_dssp -CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT--
T ss_pred -ccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc--
Confidence 5789999999999999987642 1224677666666643222111101 11223332
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcc-cCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCccc
Q 011801 168 SNNFKITREALEAAYERAQEASINIKGLIITNP-SNPLG-TTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTS 245 (477)
Q Consensus 168 ~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG-~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s 245 (477)
-|+++++++++. .++.+|++ .| ....| ...+++-+++|.++|+++|+++|+||+..++.-.+..+..
T Consensus 175 -----~d~~~l~~~l~~-----~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~ 243 (404)
T d2byla1 175 -----NDLPALERALQD-----PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV 243 (404)
T ss_dssp -----TCHHHHHHHHTS-----TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----cCHHHHHHhcCC-----CCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchh
Confidence 267888888753 36776665 46 33456 4567788999999999999999999999875444443221
Q ss_pred HHHhhhhccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhc--ccCCCchHHHHHHHHhcCChhhHHHHH
Q 011801 246 VAEVIQEMDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMS--SFGLVSSQTQYLLASMLSDDEFVDNFL 322 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~--~~~~vs~~~q~~~~~~L~~~~~~~~~~ 322 (477)
+.. +..+| ++ +++|.+| .| +.+|.+++.+ .+.+...... +-...++++..++.+.|+--+ +
T Consensus 244 --~~~---gv~PD--i~--~~gK~l~-gG~~p~~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~--~--- 307 (404)
T d2byla1 244 --DYE---NVRPD--IV--LLGKALS-GGLYPVSAVLCDD-DIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLE--E--- 307 (404)
T ss_dssp --GGG---TCCCS--EE--EECGGGG-TTSSCCEEEEECH-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--H---
T ss_pred --hhc---CCCCC--EE--EECchhh-CCCccceeeeech-hhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHH--h---
Confidence 111 22344 33 7899999 66 8999999954 4433322211 111245666666666554211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC---CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCC
Q 011801 323 VETSKRLAKRHHNFTKGLEQVG---INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPG 399 (477)
Q Consensus 323 ~~~~~~l~~r~~~l~~~L~~~g---i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~ 399 (477)
+...++.++..+++.+.|.++. +.-. ...|++.-+.+...... ...++..++++ +||.+.|. ..+
T Consensus 308 ~~l~~~~~~~g~~l~~~l~~l~~~~i~~v-Rg~Gl~~~i~~~~~~~~----~~~~~~~~l~~-~Gvl~~~~------~~~ 375 (404)
T d2byla1 308 ENLAENADKLGIILRNELMKLPSDVVTAV-RGKGLLNAIVIKETKDW----DAWKVCLRLRD-NGLLAKPT------HGD 375 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCTTTEEEE-EEETTEEEEEECCCSSC----CHHHHHHHHHH-TTEECEEE------ETT
T ss_pred cCchhhhhHhhHHHHHHHHhhccccceee-eecccEEEEEEecCCch----hHHHHHHHHHh-CCeEEecC------CCC
Confidence 1122333444455666666542 2111 23455655665432111 12246666665 59998763 135
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 400 WFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 400 ~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.+|++... ++++++++++++|++.+.+
T Consensus 376 ~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 376 IIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 78998764 4999999999999999875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.2e-12 Score=131.30 Aligned_cols=283 Identities=13% Similarity=0.071 Sum_probs=164.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------CCCCeEEEcCCCccchHHHHhhhCC-------------cEEEEEecc-CC
Q 011801 110 DPDRIVMGGGATGANELIMFCLA-------NPGDAFLVPSPYYAAFDRDLSWRTG-------------VQIVPVHCD-IS 168 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~-------~~Gd~vlv~~P~y~~~~~~~~~~~g-------------~~~~~v~~~-~~ 168 (477)
.-+.+++++++++|++.++.... .+..+|+...-+|.+....+...++ ......+.. ..
T Consensus 102 ~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T d1s0aa_ 102 PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred CcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccc
Confidence 45689999999999998886542 2345788888888764422211111 111222211 11
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 169 NNFKITREALEAAYERAQEASINIKGLIITNP-SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 169 ~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
.....+...+++..+.....+.++.+|++.-. .+-.|. ..+++-+++|.++|+++|+++|+||++.++.-.+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~- 260 (429)
T d1s0aa_ 182 MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFAC- 260 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG-
T ss_pred cccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccc-
Confidence 11222333333333333334557877666532 355554 568899999999999999999999999986444433221
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--------cccCCCchHHHHHHHHhcC---Ch
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--------SSFGLVSSQTQYLLASMLS---DD 315 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--------~~~~~vs~~~q~~~~~~L~---~~ 315 (477)
+.. +..+| ++ +++|.++-.++.+|.+++.++ +.+....- .+|+ .++++..++.+.|+ ..
T Consensus 261 -~~~---~v~PD--i~--~~gK~l~gG~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~-gnp~~~aaa~a~L~~i~~~ 330 (429)
T d1s0aa_ 261 -EHA---EIAPD--IL--CLGKALTGGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFM-GNPLACAAANASLAILESG 330 (429)
T ss_dssp -GGG---TCCCS--EE--EECGGGGTSSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTT-TCHHHHHHHHHHHHHHHTC
T ss_pred -ccc---eeccc--cc--ccccccccccccccchhhHHH-HHhccCCCCCcceeecCCCC-CCcccchhhhccccccccc
Confidence 111 12333 22 568999744489999999554 44433221 1222 45555555555554 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhC---C-CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCC
Q 011801 316 EFVDNFLVETSKRLAKRHHNFTKGLEQV---G-INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGS 391 (477)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~l~~~L~~~---g-i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~ 391 (477)
++ ..+.++.-+++.++|+++ . +.-. ...|+++-+++..... ...+.+.+++ +||.+.|.
T Consensus 331 ~~--------~~~~~~~g~~l~~~L~~l~~~~~v~~v-rg~Gl~~~~e~~~~~~------~~~~~~~~~~-~Gl~~~~~- 393 (429)
T d1s0aa_ 331 DW--------QQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPVN------MAALQKFFVE-QGVWIRPF- 393 (429)
T ss_dssp HH--------HHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCBC------HHHHHHHHHH-TTEECCCB-
T ss_pred cc--------cchhhHHHHHHHHHHHHhccCCceEEE-eecccEEEEEecCccc------HHHHHHHHHH-CCcEEEec-
Confidence 32 222333334455555443 2 2211 2345676677653221 1245555554 59998764
Q ss_pred CCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 392 SFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 392 ~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
.+.+|++... ++++++++++++|.+++++
T Consensus 394 ------g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 394 ------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred ------CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 2579998765 3999999999999999876
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=1.2e-12 Score=129.66 Aligned_cols=328 Identities=14% Similarity=0.111 Sum_probs=191.9
Q ss_pred CCCCcccccccc--cccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGL--AENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~--~~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+.. +.+.++ .+.+.+.+++.. +.....+.. -..+.+..+++.+..... .
T Consensus 33 d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~-------------~~~~~~~~~-~~~~~~~~la~~l~~~~~----~ 94 (387)
T d1vefa1 33 DAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQA-------------ETLMAMPQT-LPTPMRGEFYRTLTAILP----P 94 (387)
T ss_dssp ETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-------------HHCCCCCTT-SCCHHHHHHHHHHHHTSC----T
T ss_pred ECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHH-------------Hhhcccccc-cCCchHHHHHHHhhhhcc----c
Confidence 455677899854 444454 466666665531 111112111 124566677776654322 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCC------------cEEEEEeccCCCCcccCH
Q 011801 110 DPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTG------------VQIVPVHCDISNNFKITR 175 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g------------~~~~~v~~~~~~~f~i~~ 175 (477)
.-+++++++++++|++.+++.. ......|+....+|++....+...+| ..+..+|.+ |.
T Consensus 95 ~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-------d~ 167 (387)
T d1vefa1 95 ELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-------DV 167 (387)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-------CH
T ss_pred cceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-------CH
Confidence 2257999999999999998763 12336788888888775433222212 123333321 67
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhc
Q 011801 176 EALEAAYERAQEASINIKGLIITNP-SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEM 253 (477)
Q Consensus 176 ~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~ 253 (477)
+.|++.+++ ++.+|++ .| ....|. ..+++-+++|.++|+++|+++|.||+..++.-.+..+. .+..
T Consensus 168 ~~l~~~~~~------~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~--~~~~--- 235 (387)
T d1vefa1 168 EALKRAVDE------ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA--FEHF--- 235 (387)
T ss_dssp HHHHHHCCT------TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST--HHHH---
T ss_pred HHHHHhcCC------CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc--cccC---
Confidence 888777643 6777655 56 233465 46788899999999999999999999998533443322 1222
Q ss_pred cCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh--cccCCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 011801 254 DCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM--SSFGLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAK 331 (477)
Q Consensus 254 ~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~--~~~~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~ 331 (477)
+..+| ++ +++|.+| .|+.++.++..++. ....... .+-...++++..++.+.|+--+ + .+..+++++
T Consensus 236 ~v~PD--i~--~~gK~l~-gG~~~~~~~~~~~~-~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~--~---~~~~~~v~~ 304 (387)
T d1vefa1 236 GIVPD--IL--TLAKALG-GGVPLGVAVMREEV-ARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE--R---TRLWERAAE 304 (387)
T ss_dssp TCCCS--EE--EECGGGG-TTSSCEEEEEEHHH-HHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH--H---HTTHHHHHH
T ss_pred CcCCc--ee--eecccCC-CCccccccccceee-eeccccCCccccCCCCcchhhhcccchhhcc--c---ccccchHhh
Confidence 11334 22 6689998 88999998885543 2222111 1111245666666555554211 1 112334445
Q ss_pred HHHHHHHHHhhCC---CeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-
Q 011801 332 RHHNFTKGLEQVG---INCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN- 407 (477)
Q Consensus 332 r~~~l~~~L~~~g---i~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~- 407 (477)
.-+++.+.|+++. +.-. ..-|++.-+++..... .....++.+.|+.+.+. ++..+|++.+.
T Consensus 305 ~g~~l~~~L~~l~~~~v~~v-rg~Gl~~~ie~~~~~~--------~~~~~~~~~~g~l~~~~------g~~~ir~~Ppl~ 369 (387)
T d1vefa1 305 LGPWFMEKLRAIPSPKIREV-RGMGLMVGLELKEKAA--------PYIARLEKEHRVLALQA------GPTVIRFLPPLV 369 (387)
T ss_dssp HHHHHHHHHHTSCCTTEEEE-EEETTEEEEEESSCSH--------HHHHHHHHHHCEECEES------STTEEEECCCTT
T ss_pred hhHHHHHHHHhcCCCceEEE-eecceEEEEEEeCCch--------HHHHHHHHHCCCeEEec------CCCEEEEECCcc
Confidence 5566667776652 2111 2234566677753211 22334444558876653 24578998765
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011801 408 MDDDTLQVALNRIAAFV 424 (477)
Q Consensus 408 ~~~e~l~~~l~~l~~~~ 424 (477)
++++++++++++|++++
T Consensus 370 it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 370 IEKEDLERVVEAVRAVL 386 (387)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 49999999999999886
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.48 E-value=9.6e-12 Score=124.95 Aligned_cols=357 Identities=13% Similarity=0.076 Sum_probs=190.1
Q ss_pred CCCCccccccccc--ccccc--HHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCCCcc
Q 011801 34 TQNPGGVIQLGLA--ENQLC--FDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGRVTF 109 (477)
Q Consensus 34 ~~~~~~~i~l~~~--~n~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~ 109 (477)
+.+.+.+||+..+ .+.++ .+.+.+++++.-+ ... |.......+.+..+|+.+.+... -
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~-------------~~~-~~~~~~~~~~~~~la~~L~~~~~----~ 98 (431)
T d1zoda1 37 DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAG-------------KLD-HLFSEMLSRPVVDLATRLANITP----P 98 (431)
T ss_dssp CTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHH-------------HCC-CCCTTCCCHHHHHHHHHHHHHSC----T
T ss_pred ECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHh-------------hcc-ccccccccHHHHHHHHHHHHhCC----c
Confidence 4556678998544 45554 4666666665311 111 11111122334455665544322 1
Q ss_pred CCCcEEEeCChHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHhhhCC-----------cEEEEEeccCCC-------
Q 011801 110 DPDRIVMGGGATGANELIMFCL--ANPGDAFLVPSPYYAAFDRDLSWRTG-----------VQIVPVHCDISN------- 169 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l--~~~Gd~vlv~~P~y~~~~~~~~~~~g-----------~~~~~v~~~~~~------- 169 (477)
..+++++++++++|++.+++.. ....+.|+...-.|++....+...++ .....++.....
T Consensus 99 ~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (431)
T d1zoda1 99 GLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERN 178 (431)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEET
T ss_pred ccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccc
Confidence 3478999999999999998763 22346788888888775433321111 112223221110
Q ss_pred CcccCHHHHHHHHHHHHHh-CCCeeEEEEeCC-CCCccc-CCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccH
Q 011801 170 NFKITREALEAAYERAQEA-SINIKGLIITNP-SNPLGT-TLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSV 246 (477)
Q Consensus 170 ~f~i~~~~l~~~~~~~~~~-~~~~k~vii~nP-~NPtG~-~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~ 246 (477)
....+.+.++.+....... ..++.+|++. | ..-.|. ..+++-+++|.++|+++|+++|.||+..++.-.+..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~iAavi~E-Pi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~- 256 (431)
T d1zoda1 179 GAYDYLAELDYAFDLIDRQSSGNLAAFIAE-PILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC- 256 (431)
T ss_dssp TEECHHHHHHHHHHHHHHHCCSCEEEEEEC-SEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH-
T ss_pred cchhhhhhHHHHHHHHHHhccccccceeec-cccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccccc-
Confidence 0111234444443332222 2356665554 5 223454 468888999999999999999999999985444444322
Q ss_pred HHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHHHHHh---cccCCCchHHHHHHHHhcC---ChhhHHH
Q 011801 247 AEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKM---SSFGLVSSQTQYLLASMLS---DDEFVDN 320 (477)
Q Consensus 247 ~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~~~~~---~~~~~vs~~~q~~~~~~L~---~~~~~~~ 320 (477)
+.. +..+| ++ +++|.+| .|+.++.+++.++......... .+....++++..++.+.|. .++. .+
T Consensus 257 -~~~---gv~PD--i~--~~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~-~~ 326 (431)
T d1zoda1 257 -QRD---GVTPD--IL--TLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGL-VA 326 (431)
T ss_dssp -HHH---TCCCS--EE--EECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTH-HH
T ss_pred -ccC---CCCcc--hh--ccccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhh-hH
Confidence 111 22344 22 6689998 8899999988655443332221 1112245555555554443 2222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhc--cCchHHHHHHHHHHHhcCeEEeCCCCCCCCCC
Q 011801 321 FLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKE--KTLEGEIALWRTIVNDVKLNVSPGSSFQCTEP 398 (477)
Q Consensus 321 ~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~--~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~ 398 (477)
...+..+++. +.+.+.+.+.++.......|+++-+++...... ........+.+.+++ .|+.+..- ......
T Consensus 327 ~~~~~g~~l~---~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~--~~~~~~ 400 (431)
T d1zoda1 327 RANVMGDRLR---RGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIV--QLPGMG 400 (431)
T ss_dssp HHHHHHHHHH---HHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEE--CCTTSC
T ss_pred HHHHHHHHHh---hhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCee--eecCCC
Confidence 1222222222 334444445554332233455655655321111 111111235555554 58863211 111235
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 399 GWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 399 ~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+.+|++.+. ++++++++++++|.+++++
T Consensus 401 ~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 401 GVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 679998765 4999999999999999875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.48 E-value=1.7e-12 Score=129.35 Aligned_cols=286 Identities=14% Similarity=0.086 Sum_probs=157.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------CCCCeEEEcCCCccchHHHHhhhCCcEEE---EEeccCCCCccc---C
Q 011801 111 PDRIVMGGGATGANELIMFCLA----------NPGDAFLVPSPYYAAFDRDLSWRTGVQIV---PVHCDISNNFKI---T 174 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~----------~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~---~v~~~~~~~f~i---~ 174 (477)
.+.+.++.++++|++.++.... .....++...-.|.+.........+.... ..|.. ..-+.+ +
T Consensus 96 ~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 174 (404)
T d1z7da1 96 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFA-PQFSKVPYDD 174 (404)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTC
T ss_pred cceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCC-ccccccccch
Confidence 5789999999999998886642 12246777777777654332221111111 11100 001111 3
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcccC-CCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhh
Q 011801 175 REALEAAYERAQEASINIKGLIITNP-SNPLGTT-LDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE 252 (477)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~k~vii~nP-~NPtG~~-~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~ 252 (477)
.++++..+. ..++.+|++ -| ....|.. .+++-+++|.++|+++|+++|+||+..++.-.+..+.. +.
T Consensus 175 ~~~l~~~~~-----~~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~--e~--- 243 (404)
T d1z7da1 175 LEALEEELK-----DPNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--HH--- 243 (404)
T ss_dssp HHHHHHHHT-----STTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG--GG---
T ss_pred HHHHHHHhc-----CCCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc--cc---
Confidence 555555443 236776665 45 4456765 46667999999999999999999999875333333221 21
Q ss_pred ccCCCCcEEEEecCCcccCCCC-ceEEEEEeCCHHHHHHHHHhccc--CCCchHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 011801 253 MDCNRDLIHIIYSLSKDMGLPG-FRVGIVYSFNDTVVNCGRKMSSF--GLVSSQTQYLLASMLSDDEFVDNFLVETSKRL 329 (477)
Q Consensus 253 ~~~~~~~viiv~SlSK~~g~~G-~RvG~i~~~~~~i~~~~~~~~~~--~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l 329 (477)
.+..+| ++ +++|.+| .| +.+|.+++.++ +.+........ ...++++..++.+.|+--.- ++..+...+.-
T Consensus 244 ~gv~PD--iv--t~gK~l~-gG~~p~~~v~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~~~~~ 316 (404)
T d1z7da1 244 YNVKPD--VI--LLGKALS-GGHYPISAVLANDD-IMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLG 316 (404)
T ss_dssp GTCCCS--EE--EECGGGG-TTSSCCEEEEECHH-HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred cCCCCC--EE--EEccccc-CCCCCcccccchHH-HHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhhccch
Confidence 122344 33 7889998 55 89999999554 43333222111 12456666666666542110 11222222222
Q ss_pred HHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-C
Q 011801 330 AKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-M 408 (477)
Q Consensus 330 ~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~ 408 (477)
....+.+.+.+++.++......-|++..+.+..... ...++...+++ +||.+.|. +.+.+|+..+. +
T Consensus 317 ~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-----~~~~~~~~l~~-~Gl~~~~~------~~~~ir~~Ppl~i 384 (404)
T d1z7da1 317 GPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-----NVLDICLKLKE-NGLITRDV------HDKTIRLTPPLCI 384 (404)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-----CHHHHHHHHHH-TTEECCEE------TTTEEEECCCTTC
T ss_pred hHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-----cHHHHHHHHHh-CCeEEecC------CCCEEEEECCcCC
Confidence 333344555566665432222345667777764211 11245555554 59998653 24568998654 4
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 011801 409 DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 409 ~~e~l~~~l~~l~~~~~~~ 427 (477)
+++++++++++|++++++.
T Consensus 385 t~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 385 TKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999763
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.48 E-value=1.1e-11 Score=122.12 Aligned_cols=171 Identities=20% Similarity=0.202 Sum_probs=124.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHh-cCCCCeEEEcCCCccchHHHHhhhCCcEEEEEecc
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCL-ANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCD 166 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l-~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~ 166 (477)
...|++.++++++ ....+.++++|.|+.+++.++ .++||.|++|.-+|+.....+.+. |++++.++++
T Consensus 23 ~~~fE~~~~~~~~----------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~-g~~pv~~Di~ 91 (374)
T d1o69a_ 23 VNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KAKPVFIDCD 91 (374)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhc-cceeEecccc
Confidence 6899999999987 347889999999999999998 789999999999999988888877 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC-Cccc
Q 011801 167 ISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP-KFTS 245 (477)
Q Consensus 167 ~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~-~~~s 245 (477)
+. .+..+.+..+.. . ....++++|+++ +..|...+ ++++.++|+++|+.||+|.+.+ |+.. ....
T Consensus 92 ~~-~~~~~~~~~~~~-~---~~~~~~~aii~~---~~~G~~~d---~~~i~~~~~~~~i~vIED~a~a---~g~~~~~~~ 157 (374)
T d1o69a_ 92 ET-YNIDVDLLKLAI-K---ECEKKPKALILT---HLYGNAAK---MDEIVEICKENDIVLIEDAAEA---LGSFYKNKA 157 (374)
T ss_dssp TT-SSBCHHHHHHHH-H---HCSSCCCEEEEE---CGGGCCCC---HHHHHHHHHHTTCEEEEECTTC---TTCEETTEE
T ss_pred cc-cccccccccccc-h---hccccccccccc---ccccchhh---hHHHHHHhhccCcchhhhhhhh---hcceECCee
Confidence 42 333333332221 1 124478888877 55788888 7888888999999999999997 3321 0011
Q ss_pred HHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHh
Q 011801 246 VAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKM 294 (477)
Q Consensus 246 ~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~ 294 (477)
+. . -..+.++|| +|.++..| -|.+++.++.+.+.++.+
T Consensus 158 ~G--------~-~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~ 197 (374)
T d1o69a_ 158 LG--------T-FGEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFY 197 (374)
T ss_dssp TT--------S-SSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHH
T ss_pred cC--------C-CCceEEEeccCcccccccc--ceeehhhhHHHHHhhccc
Confidence 10 1 112455677 58887444 588999888887766654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.42 E-value=2.1e-11 Score=119.97 Aligned_cols=287 Identities=13% Similarity=0.118 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCC--CeEEEcCCCccchHHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPG--DAFLVPSPYYAAFDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~G--d~vlv~~P~y~~~~~~~~~~~g~~~~~v~ 164 (477)
..+|++.++++++ ...++.++++|.|+.+++.++. .+| |.|++|.-+|+.....+.+. |++++.++
T Consensus 33 v~~fE~~~~~~~g----------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~-G~~pv~vD 101 (371)
T d2fnua1 33 SLLFEEALCEFLG----------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPVFAG 101 (371)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEEECC
T ss_pred HHHHHHHHHHHHC----------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeecc-Cccccccc
Confidence 6889999999987 3578899999999999999973 344 47999999999888887776 99999999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
++.. . .++.+++++.+. .++++|+++ +..|...+ +++|.++|+++++.||+|.+++....-...
T Consensus 102 i~~~-~-~~~~~~~~~~~~------~~t~avi~v---h~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~-- 165 (371)
T d2fnua1 102 IKND-G-NIDELALEKLIN------ERTKAIVSV---DYAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQNK-- 165 (371)
T ss_dssp BCTT-S-SBCGGGSGGGCC------TTEEEEEEE---CGGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTE--
T ss_pred cccc-c-cccchhhhhhcc------chhhccccc---cccccccc---cccccccccccchhhccchhhccCceeccc--
Confidence 8754 3 345566665543 389999877 56898888 667888888999999999999732111111
Q ss_pred cHHHhhhhccCCCCcEEEEecC--CcccCCCCceEEEEEeCCHHHHHHHHHhcccCC------------------CchHH
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSL--SKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGL------------------VSSQT 304 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~Sl--SK~~g~~G~RvG~i~~~~~~i~~~~~~~~~~~~------------------vs~~~ 304 (477)
.... ..+ +.+.|| +|.++..+ .|.|++.++.+.+.++.....+. ++.+.
T Consensus 166 ~~G~-------~g~--~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~ 234 (371)
T d2fnua1 166 KVGG-------FAL--ASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQ 234 (371)
T ss_dssp ETTS-------SSS--EEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHH
T ss_pred cCCc-------ccc--cccccccccccccccc--ceEEEeechhhhhhcccccccccccccccccccccccccccccchh
Confidence 1000 112 334566 79987433 79999988888777766543221 23333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecC----Cce-EEEEeeccchhhccCchHHHHHHHH
Q 011801 305 QYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKS----NAG-LFFWMDLRHLLKEKTLEGEIALWRT 378 (477)
Q Consensus 305 q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~----~~g-~~~~~~l~~~~~~~~~~~e~~l~~~ 378 (477)
..++..-|..- +.++++ + ++......+.|.+. ++....+ ... ....+.+..... ..-.++.+.
T Consensus 235 Aaigl~qL~~l---~~~~~~-R---~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~r~~~~~~ 303 (371)
T d2fnua1 235 SALGLSQLKKA---PFLMQK-R---EEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TCKKLILES 303 (371)
T ss_dssp HHHHHHHHTTH---HHHHHH-H---HHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GGHHHHHHH
T ss_pred hhhhhhhhhhc---cchhhh-h---hhhhhhhcccccccccccccccccccccccccccccccccch----hHHHHHHHH
Confidence 33333334332 333332 2 23334456667665 3333221 111 112222322111 111134444
Q ss_pred HHHhcCeEEeCCCCCCC------------CC--C-------CEEEEEe-ccCCHHHHHHHHHHHHHHHhh
Q 011801 379 IVNDVKLNVSPGSSFQC------------TE--P-------GWFRVCF-ANMDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 379 ll~~~gI~v~pg~~f~~------------~~--~-------~~~Rl~~-~~~~~e~l~~~l~~l~~~~~~ 426 (477)
|++.||.+++. |.+ .. | ..+.|-+ ..+++++++..++.|.+++++
T Consensus 304 -L~~~gI~~~~~--y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 304 -LHKRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp -HHHTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHCCCCccee--CcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 45679988764 221 11 1 2465544 346999999999999999875
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.34 E-value=4.4e-11 Score=120.93 Aligned_cols=352 Identities=12% Similarity=0.066 Sum_probs=188.8
Q ss_pred CCCCCCCcccccccc--ccccc--cHHHHHHHHHhCCCCcccccccccccccccccCCCCCcHHHHHHHHHHHhcccCCC
Q 011801 31 FHPTQNPGGVIQLGL--AENQL--CFDLIKDWITKNPYASICTAEGVEVFKDIAIFQDYHGLPEFRQAVAKFMGKGRGGR 106 (477)
Q Consensus 31 ~~~~~~~~~~i~l~~--~~n~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~ 106 (477)
|..+.+.+.+||+.. +.+.+ +.+.+.+.+.+..+.. .+.....+.. .....+.+.+++.+....+
T Consensus 46 ~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~--------~~~~~~~~~~-~~~~~~a~~lae~l~~~~~-- 114 (461)
T d1ohwa_ 46 YLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVS--------TFINRPALGI-LPPENFVEKLRESLLSVAP-- 114 (461)
T ss_dssp EEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHH--------HHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--
T ss_pred EEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhh--------hhcccccccc-cchHHHHHHHHHHHHhhhc--
Confidence 333445667888754 33444 3456666666531100 0000111111 1234566777777654332
Q ss_pred CccCCCcEEEeCChHHHHHHHHHHhc----------------------------CCCCeEEEcCCCccchHHHHhhhCCc
Q 011801 107 VTFDPDRIVMGGGATGANELIMFCLA----------------------------NPGDAFLVPSPYYAAFDRDLSWRTGV 158 (477)
Q Consensus 107 ~~~~~~~i~~t~G~t~al~~i~~~l~----------------------------~~Gd~vlv~~P~y~~~~~~~~~~~g~ 158 (477)
-.-+++++++++++|++.+++... .+...|+...-+|++....+...+|.
T Consensus 115 --~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~ 192 (461)
T d1ohwa_ 115 --KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHS 192 (461)
T ss_dssp --TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCS
T ss_pred --cCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCC
Confidence 234689999999999999886531 22347888888888754332222221
Q ss_pred -------------EEEEEeccCCCCc-----------ccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcc-cCCCHHHH
Q 011801 159 -------------QIVPVHCDISNNF-----------KITREALEAAYERAQEASINIKGLIITNPSNPLG-TTLDRDTL 213 (477)
Q Consensus 159 -------------~~~~v~~~~~~~f-----------~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG-~~~~~~~l 213 (477)
...+.+... ..+ ....+++++.+........++.+|++..-....| ...+.+-+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl 271 (461)
T d1ohwa_ 193 KAIHKIDIPSFDWPIAPFPRLK-YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFF 271 (461)
T ss_dssp CHHHHTTCCCCCCCEECCCCCC-SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHH
T ss_pred cccccccccccCCccccccccc-ccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHH
Confidence 111111100 000 1124566666665555566787766654344456 45678889
Q ss_pred HHHHHHHHhcCeEEEecccccccccCCCCcccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHHHHH--H
Q 011801 214 KSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNC--G 291 (477)
Q Consensus 214 ~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i~~~--~ 291 (477)
++|.++|+++|+++|+||++.++.-.+..+ ..... +......++ +++|.++ . |++.+. ..+... .
T Consensus 272 ~~lr~lc~~~gillI~DEV~tG~gRtG~~~-~~e~~----gi~~~PDiv--~~gK~l~-~----g~~~~~-~~~~~~~~~ 338 (461)
T d1ohwa_ 272 RKLRDISRKHGCAFLVDEVQTGGGSTGKFW-AHEHW----GLDDPADVM--TFSKKMM-T----GGFFHK-EEFRPNAPY 338 (461)
T ss_dssp HHHHHHHHHTTCEEEEECTTTCSSTTSSSS-GGGGG----CCSSCCSEE--EECGGGS-S----EEEEEC-GGGSCSSTT
T ss_pred HHHHHHHHhhCcceeccccccccccccccc-ccccc----ccccCchhh--hhhhccc-c----cccccc-ccccccccc
Confidence 999999999999999999999864444322 21111 111111233 7789886 3 444442 221110 0
Q ss_pred HHhcccCCCchHHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEEEEeeccchhhccC
Q 011801 292 RKMSSFGLVSSQTQYLLASMLS---DDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKT 368 (477)
Q Consensus 292 ~~~~~~~~vs~~~q~~~~~~L~---~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~~~~~l~~~~~~~~ 368 (477)
....+|+ .++++..++.+.|+ ..++ -++..+..+++.++.+.+.+.... -+.-.. ..|+++-++++...
T Consensus 339 ~~~~T~~-g~p~~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~-~i~~vr-G~Gl~~~ie~~~~~---- 410 (461)
T d1ohwa_ 339 RIFNTWL-GDPSKNLLLAEVINIIKREDL-LSNAAHAGKVLLTGLLDLQARYPQ-FISRVR-GRGTFCSFDTPDES---- 410 (461)
T ss_dssp SSCCSCS-SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHCTT-TCEEEE-EETTEEEEECSSHH----
T ss_pred ccccccc-cccccchhhcccchhhhhhhH-HHHHHHHHHHHHHHHHHHHhhCCC-ceEEee-eeeEEEEEEcCCHH----
Confidence 0112222 45555555555544 2222 122333333333332222222111 122222 24577778886421
Q ss_pred chHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 369 LEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 369 ~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
...++...+++ +||.+.+.. +..+|+.... +++++++.++++|.+++.+
T Consensus 411 --~~~~i~~~~~~-~Gll~~~~~------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 411 --IRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp --HHHHHHHHHHH-TTEECEEET------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHH-CCeEEeeCC------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 12245666665 599987742 4679988765 4999999999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.24 E-value=3.3e-11 Score=117.78 Aligned_cols=287 Identities=14% Similarity=0.094 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhcccCCCCcc-CCCcEEEeCCh-HHHHHHHHHHhcCCCCeEEEcCCC-ccc-hHHHHhhhCCcEEEEEe
Q 011801 89 PEFRQAVAKFMGKGRGGRVTF-DPDRIVMGGGA-TGANELIMFCLANPGDAFLVPSPY-YAA-FDRDLSWRTGVQIVPVH 164 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~-~~~~i~~t~G~-t~al~~i~~~l~~~Gd~vlv~~P~-y~~-~~~~~~~~~g~~~~~v~ 164 (477)
.+.|+.++++++ . ++..|++++|+ +.+++++...+..+|+.+++..-. |.. +...++.. |..+..+.
T Consensus 51 ~~~r~~l~~l~~--------~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~-g~~~~~~~ 121 (361)
T d2c0ra1 51 NEAQARLLALLG--------NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-GDTHVAAS 121 (361)
T ss_dssp HHHHHHHHHHTT--------CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-SCEEEEEE
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhc-Cceeeeec
Confidence 455555666654 2 23367877765 455567777788889988766543 322 23444545 88888887
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+... .++++++++.++ ..+.+.+ +|.||.+.+ ++++.++|+++|+++++|.+.+ +...+ .
T Consensus 122 ~~~~~--~~~~~~~~~~~~-------~~~~~~v---~~~tg~~~~---~~~i~~~~~~~~al~~vDavss---~g~~~-i 182 (361)
T d2c0ra1 122 SEASN--YMTLPKLQEIQL-------QDNAAYL---HLTSNETIE---GAQFKAFPDTGSVPLIGDMSSD---ILSRP-F 182 (361)
T ss_dssp CGGGT--TCSCCCGGGCCC-------CTTEEEE---EEESEETTT---TEECSSCCCCTTSCEEEECTTT---TTSSC-C
T ss_pred ccccc--ccchhhhhhhcc-------cCcceEE---EEeccccee---cceEEEeeccCCceEEEEeecc---ccccc-c
Confidence 66433 345566655433 2223333 467898888 5567788999999999999997 33333 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHH------------HHHHHHHhcccCCCchHHHHHHHHhc
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDT------------VVNCGRKMSSFGLVSSQTQYLLASML 312 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~------------i~~~~~~~~~~~~vs~~~q~~~~~~L 312 (477)
.+.+ .+ +.+.|.+|.++.+|.-.+++.. ... ..........+..........+...+
T Consensus 183 d~~~--------~d--i~~~s~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (361)
T d2c0ra1 183 DLNQ--------FG--LVYAGAQKNLGPSGVTVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVL 251 (361)
T ss_dssp CGGG--------CS--EEEEETTTTTCCSSCEEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHH
T ss_pred cccc--------ce--eEEEecccccccccCcEEEEEh-HHhhhCccccccccccccccccccccccccceeeehhhhHH
Confidence 3221 23 4456889999988754444432 211 01111111111111111111111111
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhCC-C-eEec---CCceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEE
Q 011801 313 SDDEFVDNFLVETSKRLAKRHHNFTKGLEQVG-I-NCLK---SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387 (477)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~g-i-~~~~---~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v 387 (477)
... ..........++.+..+..+.......+ . .... ..+..-+.+.+++..+. .++ ...++++||.+
T Consensus 252 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~------~~~-~~~L~~~GI~~ 323 (361)
T d2c0ra1 252 KWI-EERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELE------KEF-VKASEQEGFVG 323 (361)
T ss_dssp HHH-HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHH------HHH-HHHHHHTTEES
T ss_pred Hhh-hhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccH------HHH-HHHHHHCCCEE
Confidence 000 0011122233333344444444444332 1 1111 11122445666654332 133 45567889999
Q ss_pred eCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhh
Q 011801 388 SPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 388 ~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~ 426 (477)
+.|- ++. +.|||++... +.|+++.+++.|+++.++
T Consensus 324 ~~G~--~~~--g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 324 LKGH--RSV--GGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp CBCC--TTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ecCC--CcC--CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 8883 332 2399999664 999999999999998876
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.2e-10 Score=113.04 Aligned_cols=291 Identities=9% Similarity=-0.032 Sum_probs=154.9
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHH-HHHHhcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEEe
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANEL-IMFCLANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPVH 164 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~-i~~~l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v~ 164 (477)
+.+.|+.|+++++. -++..|++++|++++... +...+..+++.+++..-.+.+. ...++.. |..++.+.
T Consensus 48 ~~~~r~~l~~l~~~-------~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 119 (360)
T d1bjna_ 48 AEEAEKDFRDLLNV-------PSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKY-CTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHHTC-------CTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-SEEEEEEC
T ss_pred HHHHHHHHHHHhCC-------CCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhc-Cccceeec
Confidence 45677778888761 123468888776655554 4455677888888877665442 2333333 66665555
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCcc
Q 011801 165 CDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFT 244 (477)
Q Consensus 165 ~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~~ 244 (477)
.+.... .+.+.+++.+ ..+++.+.++..+|-||+..+... + .+..+++.+++|.+.+ +...+ .
T Consensus 120 ~~~~~~--~~~~~~~~~~------~~~~~~v~v~~~~~~t~~~~~~~~---i--~~~~~~~~v~vDa~~~---~~~~~-v 182 (360)
T d1bjna_ 120 KVTVDG--LRAVKPMREW------QLSDNAAYMHYCPNETIDGIAIDE---T--PDFGADVVVAADFSST---ILSRP-I 182 (360)
T ss_dssp EEEETT--EEEECCGGGC------CCCSSCSCEEECSEETTTTEECCC---C--CCCCTTCCEEEECTTT---TTSSC-C
T ss_pred cccCCC--cchhhhhhhh------ccCCceeEEEecccccccCccccc---e--ecccccceeeeeeecc---cccee-e
Confidence 433221 2333333322 336777788888899998877433 3 2456788999998876 33322 2
Q ss_pred cHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH------------HHHHHHhcccCCCch-HHHHHHHHh
Q 011801 245 SVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV------------VNCGRKMSSFGLVSS-QTQYLLASM 311 (477)
Q Consensus 245 s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i------------~~~~~~~~~~~~vs~-~~q~~~~~~ 311 (477)
... +..+.+.|.+|.++.|+.-.+++.. +... .........+..... ....+....
T Consensus 183 d~~----------~~dv~~~ss~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T d1bjna_ 183 DVS----------RYGVIYAGAQKNIGPAGLTIVIVRE-DLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVF 251 (360)
T ss_dssp CGG----------GCSEEEEETTTTTSSTTCEEEEEEG-GGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHH
T ss_pred eec----------cceeEEEEcccccccCCCceeEeee-hhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHH
Confidence 211 2235677889999866544444433 2211 011111111111111 111111111
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCC----ceEEEEeeccchhhccCchHHHHHHHHHHHhcCeEE
Q 011801 312 LSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSN----AGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNV 387 (477)
Q Consensus 312 L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~----~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~~gI~v 387 (477)
+. ...........++..+....+.+.+...+.....+. ..-.+.+.+++.... .++ ..+++++||.+
T Consensus 252 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~------~~~-~~~l~~~Gi~~ 322 (360)
T d1bjna_ 252 KW--LKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALD------KLF-LEESFAAGLHA 322 (360)
T ss_dssp HH--HHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGH------HHH-HHHHHHTTEEC
T ss_pred HH--HhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcccH------HHH-HHHHHHCCCEe
Confidence 10 000111233344444444555555555543322111 112344566643322 134 34566789999
Q ss_pred eCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhh
Q 011801 388 SPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQD 427 (477)
Q Consensus 388 ~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~ 427 (477)
+.|... -|.||+++.+. ++|+++.+++.|+++.+++
T Consensus 323 ~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 323 LKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp CBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 887321 13499999664 9999999999999988753
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.95 E-value=1.2e-09 Score=106.17 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHhcccCCCCccCCC-cEEEeCChHHHHHHHHHH-hcCCCCeEEEcCCCccch--HHHHhhhCCcEEEEE
Q 011801 88 LPEFRQAVAKFMGKGRGGRVTFDPD-RIVMGGGATGANELIMFC-LANPGDAFLVPSPYYAAF--DRDLSWRTGVQIVPV 163 (477)
Q Consensus 88 ~~~lr~aia~~~~~~~g~~~~~~~~-~i~~t~G~t~al~~i~~~-l~~~Gd~vlv~~P~y~~~--~~~~~~~~g~~~~~v 163 (477)
+.+.|+.++++++ .+++ .|++++|++++...+... +..+++.+++....+..- ...+... +...+..
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~-~~~~~~~ 120 (360)
T d1w23a_ 50 HEQAQNLLRELLQ--------IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLL-GETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHh-hhcceee
Confidence 3567788888886 3333 688899987777655544 567788888876544322 2223333 6665555
Q ss_pred eccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCCCc
Q 011801 164 HCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKF 243 (477)
Q Consensus 164 ~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~~~ 243 (477)
....... ...++++... ...+.+.+ +|-||.+.+ +++|.++|+++|+++|+|.+.+ +...+
T Consensus 121 ~~~~~~~--~~~~~~~~~~-------~~~~~~~~---~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs---~g~~~- 181 (360)
T d1w23a_ 121 STKANSY--QSIPDFSEFQ-------LNENDAYL---HITSNNTIY---GTQYQNFPEINHAPLIADMSSD---ILSRP- 181 (360)
T ss_dssp ECGGGTS--CSCCCGGGCC-------CCTTEEEE---EEESEETTT---TEECSSCCCCCSSCEEEECTTT---TTSSC-
T ss_pred ccccccc--cchhhhhhcc-------ccccccee---EecCCcccc---ceeeeeccccceeeEEeecccc---ccccc-
Confidence 5432221 1223333221 12233333 466899988 6678889999999999999998 33322
Q ss_pred ccHHHhhhhccCCCCcEEEEecCCcccCCCCceEEEEEeCCHHH------------HHHHHHhcccCCCchHHHH----H
Q 011801 244 TSVAEVIQEMDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTV------------VNCGRKMSSFGLVSSQTQY----L 307 (477)
Q Consensus 244 ~s~~~~~~~~~~~~~~viiv~SlSK~~g~~G~RvG~i~~~~~~i------------~~~~~~~~~~~~vs~~~q~----~ 307 (477)
..+. ..+ +.+.+++|.++++|. .|+++..+... ................... .
T Consensus 182 id~~--------~~~--vd~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (360)
T d1w23a_ 182 LKVN--------QFG--MIYAGAQKNLGPSGV-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNV 250 (360)
T ss_dssp CCGG--------GCS--EEEEETTTTTSCTTC-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHH
T ss_pred cccc--------ccc--ceEEeeccccccCCc-ceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHH
Confidence 2222 123 345577787775553 44444322110 0001111111111111111 1
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEec----CCceEEEEeeccchhhccCchHHHHHHHHHHHh
Q 011801 308 LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLK----SNAGLFFWMDLRHLLKEKTLEGEIALWRTIVND 382 (477)
Q Consensus 308 ~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~----~~~g~~~~~~l~~~~~~~~~~~e~~l~~~ll~~ 382 (477)
+..++..... . ...++............... ...... ..+.-.+.+.+++.... .++.. .+.+
T Consensus 251 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~------~~~~~-~l~~ 318 (360)
T d1w23a_ 251 LDWIKDLGGA-E----AIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELN------QQFLA-KAKE 318 (360)
T ss_dssp HHHHHHTTHH-H----HHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHH------HHHHH-HHHH
T ss_pred HHHHhhhhhh-H----HHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccH------HHHHH-HHHH
Confidence 1122222211 1 11112222222222222222 222221 11111455666643222 23444 4567
Q ss_pred cCeEEeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHhh
Q 011801 383 VKLNVSPGSSFQCTEPGWFRVCFAN-MDDDTLQVALNRIAAFVQQ 426 (477)
Q Consensus 383 ~gI~v~pg~~f~~~~~~~~Rl~~~~-~~~e~l~~~l~~l~~~~~~ 426 (477)
+||.++.|..+. +.+|+++-+ ++.|+++.+++.|++|.++
T Consensus 319 ~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 319 QGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp TTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 799998874332 239999855 4899999999999999864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.83 E-value=1.5e-07 Score=94.04 Aligned_cols=299 Identities=13% Similarity=0.102 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc---CCC----CeEEEcCCCccchHHHHhhhCCcEEE
Q 011801 89 PEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA---NPG----DAFLVPSPYYAAFDRDLSWRTGVQIV 161 (477)
Q Consensus 89 ~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~---~~G----d~vlv~~P~y~~~~~~~~~~~g~~~~ 161 (477)
-++...|++..+ .+-.+.-+-.|+|.+-+.++.+.. +.| ..+++..+.+...........+.+++
T Consensus 109 fEfQtmi~eLTG--------MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (471)
T d1wyub1 109 WELGEYLKALTG--------MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR 180 (471)
T ss_dssp HHHHHHHHHHHT--------CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhC--------CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceee
Confidence 345555555554 343444456677776665554431 222 34566666666555444444488888
Q ss_pred EEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCCC
Q 011801 162 PVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSP 241 (477)
Q Consensus 162 ~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~~ 241 (477)
.++.+. ....+.+.++.... .++.++++.+|++.-+..-. .+.+.+.+++.+..+++|-+-......-.
T Consensus 181 ~~~~~~--~~~~~~~~~~~~~~------~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~g~~~~~~~~~~~~~~~l~ 249 (471)
T d1wyub1 181 EIPSGP--EGEVDLEALKRELG------PHVAALMLTNPNTLGLFERR---ILEISRLCKEAGVQLYYDGANLNAIMGWA 249 (471)
T ss_dssp EECBCT--TSSBCHHHHHHHCS------TTEEEEEECSSCTTSCCCTT---HHHHHHHHHHHTCEEEEEGGGGGGTTTTC
T ss_pred cccccc--cccccchhhhhhhh------ccccceeeccCCCcccccch---hhhhHHHHHhccccccccccchhhhhhcc
Confidence 887654 34567777776543 37889999999766554433 66777777788877776654432211111
Q ss_pred CcccHHHhhhhccCCCCcEEEEecCCcccCC----CCceEEEEEeCCHHHHHHHHHh---------------cc---cCC
Q 011801 242 KFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL----PGFRVGIVYSFNDTVVNCGRKM---------------SS---FGL 299 (477)
Q Consensus 242 ~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~----~G~RvG~i~~~~~~i~~~~~~~---------------~~---~~~ 299 (477)
+..+. ...+++...++.||. .|--+|++.+.++.+...--+. +. -..
T Consensus 250 ---~p~~~--------g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~a 318 (471)
T d1wyub1 250 ---RPGDM--------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS 318 (471)
T ss_dssp ---CHHHH--------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSS
T ss_pred ---ccCcc--------cccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhh
Confidence 11111 122344455555543 4556888888655432211000 00 000
Q ss_pred CchHHHHH--HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEecCCceEE--EEeeccchhhccCchHHHHH
Q 011801 300 VSSQTQYL--LASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLF--FWMDLRHLLKEKTLEGEIAL 375 (477)
Q Consensus 300 vs~~~q~~--~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~gi~~~~~~~g~~--~~~~l~~~~~~~~~~~e~~l 375 (477)
.+.++..+ +...+.--. .+-+++..++..++..++.+.|+..|+++.. .+.+| +.++++.... ..++
T Consensus 319 ctnqaL~al~A~vYlsllG--~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~~~~~~------~~~i 389 (471)
T d1wyub1 319 FYGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPY-DGPSMHEFVAQPPEGFR------ALDL 389 (471)
T ss_dssp TTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CSSCCSCEEEBCSTTCC------HHHH
T ss_pred hhhhHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHhhcCceecc-CcceeeEEeecCCCCCC------HHHH
Confidence 11222222 222222111 3346788888889999999999888887643 22222 2345543222 1246
Q ss_pred HHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHHhhhh
Q 011801 376 WRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFVQQDK 428 (477)
Q Consensus 376 ~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~~~~~ 428 (477)
.+.+++ .|+.- |...|....++.+-||+.-. +++++|.+++.|++++++.+
T Consensus 390 ~k~L~~-~G~~~-~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 390 AKGLLE-LGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp HHHHHH-TTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHH-cCCCC-CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 677775 48842 33334333456788999765 89999999999999998754
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=1e-06 Score=86.85 Aligned_cols=291 Identities=14% Similarity=0.144 Sum_probs=166.8
Q ss_pred CCcHHHHHHHHHHHhcccCCCCccCCCcEEEeCChHHHHHHHHHHhc-CCCCeEEEcCCCccchHHH----HhhhCCcEE
Q 011801 86 HGLPEFRQAVAKFMGKGRGGRVTFDPDRIVMGGGATGANELIMFCLA-NPGDAFLVPSPYYAAFDRD----LSWRTGVQI 160 (477)
Q Consensus 86 ~G~~~lr~aia~~~~~~~g~~~~~~~~~i~~t~G~t~al~~i~~~l~-~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~ 160 (477)
+|..++--.+..++.+..| .+.-+.-+-.|+++..+.++.+.. ...+.++++.-.++.+... ++. .|+++
T Consensus 104 QG~Lq~l~e~q~~l~eltG----md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~-~g~~v 178 (437)
T d1wyua1 104 QGVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKL 178 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhccc-ceeeE
Confidence 3555555555666665555 444456666788888877765542 2457889998888766543 233 49999
Q ss_pred EEEeccCCCCcccCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcCeEEEecccccccccCC
Q 011801 161 VPVHCDISNNFKITREALEAAYERAQEASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSS 240 (477)
Q Consensus 161 ~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~~~lI~De~y~~~~~~~ 240 (477)
+.++.+.. ..+.+++ +.++.+|+++|| |-.|.+-+ ++++.+++++.|.++++|..-..+ ..
T Consensus 179 v~v~~~~~---~~~~~~~----------~~~~Aavmi~~P-nt~G~~ed---~~~i~~~~h~~G~l~~~~ad~~al--~~ 239 (437)
T d1wyua1 179 LTLPLEGG---RTPLPEV----------GEEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSL--GV 239 (437)
T ss_dssp EEECCBTT---BCCCCCC----------CTTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGG--GT
T ss_pred Eeeecccc---cchhhhh----------ccceeEEEEccc-cccccccc---hHHHHHHhhhccceEEeeechhhh--hc
Confidence 99987642 2222222 238999999999 55788744 788999999999987766433221 11
Q ss_pred CCcccHHHhhhhccCCCCcEEEEecCCcccCC----CCceEEEEEeCCHHHHHH--------------------------
Q 011801 241 PKFTSVAEVIQEMDCNRDLIHIIYSLSKDMGL----PGFRVGIVYSFNDTVVNC-------------------------- 290 (477)
Q Consensus 241 ~~~~s~~~~~~~~~~~~~~viiv~SlSK~~g~----~G~RvG~i~~~~~~i~~~-------------------------- 290 (477)
..+..++ +..+++++ +|.||. .|--.|++.+.++.+...
T Consensus 240 --l~~Pg~~--------GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreq 308 (437)
T d1wyua1 240 --LKPPGAY--------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQ 308 (437)
T ss_dssp --BCCHHHH--------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSH
T ss_pred --ccccccc--------ccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccc
Confidence 1122222 23356666 565543 344568887754332110
Q ss_pred -HHHh--ccc-CCCchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeEecCCceEE--EEeeccch
Q 011801 291 -GRKM--SSF-GLVSSQTQYLLASMLSDDEFVDNFLVETSKRLAKRHHNFTKGLEQV-GINCLKSNAGLF--FWMDLRHL 363 (477)
Q Consensus 291 -~~~~--~~~-~~vs~~~q~~~~~~L~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~-gi~~~~~~~g~~--~~~~l~~~ 363 (477)
.++. .+. .+...+....+...+.--. .+-+++..++...+..++.+.|.+. |+....+.. +| +.++++..
T Consensus 309 hIrRekatsnict~q~l~a~~a~~Y~~~lG--~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~-~f~ef~v~~~~~ 385 (437)
T d1wyua1 309 YIRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP-FFNEFALALPKD 385 (437)
T ss_dssp HHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS-BCSEEEEECSSC
T ss_pred cccccccccchhhHHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC-eeeEEEEECCCC
Confidence 1110 011 1111111111111111101 2235677777888889999999887 777554332 22 23344321
Q ss_pred hhccCchHHHHHHHHHHHhcCeEEeCCCCCCCCCCCEEEEEeccC-CHHHHHHHHHHHHHHH
Q 011801 364 LKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCFANM-DDDTLQVALNRIAAFV 424 (477)
Q Consensus 364 ~~~~~~~~e~~l~~~ll~~~gI~v~pg~~f~~~~~~~~Rl~~~~~-~~e~l~~~l~~l~~~~ 424 (477)
..++.+++++ +|+.. |-..|..-.++.+.+++... +.+++|.++++|++++
T Consensus 386 --------~~~i~k~L~d-~G~~~-~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 386 --------PEAVRRALAE-RGFHG-ATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp --------HHHHHHHHHH-TTCCC-CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHh-CCCCC-CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 1246666664 58852 11112222457899999764 8999999999998864
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.18 E-value=0.79 Score=39.82 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
-..+++|.|+.+-=..++..|++.|-.|++..-.-.......+.. |.++..+.+|-+ +.+.+++.+++..+.-.
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dls-----~~~~i~~~~~~i~~~~g 78 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-EAEAIAVVADVS-----DPKAVEAVFAEALEEFG 78 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-CSSEEEEECCTT-----SHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCceEEEEecCC-----CHHHHHHHHHHHHHHhC
Confidence 345777777766666677889999999988765544444555555 778888888753 57888888887776656
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++..++.+....+.+. -++.+++++..+.
T Consensus 79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~ 109 (241)
T d2a4ka1 79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 109 (241)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHH
T ss_pred CccEeccccccccccchhhhhcccccccccc
Confidence 7886555433344443 3466666666554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.47 E-value=1.3 Score=38.49 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=64.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
-..+++|.|+.+-=..+...|++.|-.|++.+-.-.......+.. +-+...+++|-. |.+++++.+++..+...
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-ADAARYVHLDVT-----QPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hCcceEEEeecC-----CHHHHHHHHHHHHHHhC
Confidence 344666666554444566778889988888765444344444444 666777777643 67888888887776656
Q ss_pred CeeEEEEeCCCCCcccC--CCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~~--~~~~~l~~l~~~ 219 (477)
++..++.+-...+.+.. ++.+++++..+.
T Consensus 80 ~idilinnAG~~~~~~~~~~~~~~~~~~~~v 110 (244)
T d1nffa_ 80 GLHVLVNNAGILNIGTIEDYALTEWQRILDV 110 (244)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred CCeEEEECCcccCCCchhhCCHHHHhHHhhc
Confidence 78754443334444443 467778777764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.96 E-value=1.3 Score=38.26 Aligned_cols=100 Identities=11% Similarity=0.160 Sum_probs=62.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
...+++|.|+++-=..+...|.+.|-.|++..-.-.......+.. +.+. +.+|-. +.+++++.+++..++-.
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-~~~~--~~~Dv~-----~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-GAHP--VVMDVA-----DPASVERGFAEALAHLG 76 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-TCEE--EECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCeE--EEEecC-----CHHHHHHHHHHHHHhcC
Confidence 345666776665555666778889988888765444444444433 5554 455432 57888888887766555
Q ss_pred CeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.. +++|. ..+.+. -++.++++++.+.
T Consensus 77 ~iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~v 107 (242)
T d1ulsa_ 77 RLDG-VVHYAGITRDNFHWKMPLEDWELVLRV 107 (242)
T ss_dssp SCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CceE-EEECCcccccCchhhCcchhhhccccc
Confidence 7885 45554 233332 3677788887774
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.69 E-value=1.1 Score=39.29 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=67.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+++-=..+...|++.|-.|++.+-.-.......+.. |.++..+++|-. +.+++++++++..++..+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-~~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-GPAACAIALDVT-----DQASIDRCVAELLDRWGS 79 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-CTTEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-CCceEEEEeeCC-----CHHHHHHHHHHHHHHhCC
Confidence 34667776665555666778889988887764444444555555 778888888743 578888888887766667
Q ss_pred eeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.. +++|. ..+.+. -++.++++++.+.
T Consensus 80 iDi-lVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (256)
T d1k2wa_ 80 IDI-LVNNAALFDLAPIVEITRESYDRLFAI 109 (256)
T ss_dssp CCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ccE-EEeecccccccccccCCHHHHHhhhce
Confidence 885 45554 233332 3577788877764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.62 E-value=1.7 Score=37.88 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=68.3
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPVHCDISNNFKITREALEAAYER 184 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~ 184 (477)
+.-..+++|.|+.+-=..+...|++.|-.|++..-.-...... .+.. |.++..+.+|-. +.+++++.+++
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~ 80 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVS-----NTDIVTKTIQQ 80 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCC-----CHHHHHHHHHH
Confidence 3344566676666555566677888998888776554443322 2334 788888888743 67888888888
Q ss_pred HHHhCCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 185 AQEASINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 185 ~~~~~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
..++-.++..++.+...++.+. -++.++++++.+.
T Consensus 81 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~ 117 (260)
T d1h5qa_ 81 IDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDV 117 (260)
T ss_dssp HHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred HHHHhCCCcEecccccccccCCHHHhccccccccccc
Confidence 8777778886544333333332 3677888887774
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=88.54 E-value=1.7 Score=37.67 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=64.3
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCCe
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASINI 192 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~~ 192 (477)
-+++|.|+.+-=..+...|++.|..|++..-.-.......+.. +.+...+.+|-. +.+++++.+++..++-.++
T Consensus 6 ~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 6 IALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-GANGKGLMLNVT-----DPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-GGGEEEEECCTT-----CHHHHHHHHHHHHHHTCSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-CCCCcEEEEEec-----CHHHhhhhhhhhhcccCCc
Confidence 4566666555445566778889998887765444444444444 666777777642 5788888888877776688
Q ss_pred eEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 193 KGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 193 k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
..++ +|. ..+.+. -++.++++++.+.
T Consensus 80 DilV-nnAg~~~~~~~~~~~~~~~~~~~~v 108 (243)
T d1q7ba_ 80 DILV-NNAGITRDNLLMRMKDEEWNDIIET 108 (243)
T ss_dssp SEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ceeh-hhhhhccccccccccccccccccce
Confidence 8655 554 233332 3567777777763
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.78 E-value=2.3 Score=36.92 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=65.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH----HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR----DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~----~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
...+++|.|+.+-=..+...|++.|-.|++..-.-..... ..+.. |.++..+.+|-. +.+++++++++..
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVS-----NYEEVKKLLEAVK 78 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTT-----CHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCC-----CHHHHHHHHHHHH
Confidence 3446666666655455667788899988887644332222 22333 788888888743 5788888888776
Q ss_pred HhCCCeeEEEEeCC-CCCcccC--CCHHHHHHHHHH
Q 011801 187 EASINIKGLIITNP-SNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 187 ~~~~~~k~vii~nP-~NPtG~~--~~~~~l~~l~~~ 219 (477)
++-.++..++ +|. ..+.+.. ++.++++++.+.
T Consensus 79 ~~~g~iDiLV-nnAG~~~~~~~~~~~~e~~~~~~~v 113 (251)
T d1vl8a_ 79 EKFGKLDTVV-NAAGINRRHPAEEFPLDEFRQVIEV 113 (251)
T ss_dssp HHHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEE-ECCCCCCCCChhhCCHHHHHHHHHh
Confidence 6656788654 444 3444433 588888888774
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=87.50 E-value=2.5 Score=36.89 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccc----hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 110 DPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAA----FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 110 ~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~----~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
+-..+++|.|+.+-=..+...|++.|-.|++..-.-.. ....++.. |.++..+.+|-. +.+++++++++.
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dvt-----~~~~v~~~~~~~ 79 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-GGEAIAVKGDVT-----VESDVINLVQSA 79 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCEEEEEECCTT-----SHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHH
Confidence 33446666666555555667788899888876543221 22334444 888888888743 578888888877
Q ss_pred HHhCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++..++..+ ++|. ....+. -++.++++++.+.
T Consensus 80 ~~~~G~iDiL-VnnAG~~~~~~~~~~~~~~~~~~~~v 115 (261)
T d1geea_ 80 IKEFGKLDVM-INNAGLENPVSSHEMSLSDWNKVIDT 115 (261)
T ss_dssp HHHHSCCCEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHhCCCCEe-eccceecCCcchhhcCHHHHHHHHHH
Confidence 6665678854 4554 222222 3678888887774
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=87.28 E-value=2 Score=37.43 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=65.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+.+-=..+...|++.|-.|++.+-.-.......+.. |.++..+.+|-. +.+++++.+++..++-.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-GDAARYQHLDVT-----IEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-GGGEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-CCceEEEEcccC-----CHHHHHHHHHHHHHHcCC
Confidence 45677766665545666778889988888765444444455544 777777887643 578888888877665557
Q ss_pred eeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 192 IKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
+.. +++|.. .+.+ .-++.++++++.+.
T Consensus 80 iDi-lVnnAg~~~~~~~~~~~~~~~~~~~~v 109 (254)
T d1hdca_ 80 VDG-LVNNAGISTGMFLETESVERFRKVVEI 109 (254)
T ss_dssp CCE-EEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred ccE-EEecCccccccccccccccccchhhhH
Confidence 875 445542 2222 23577777777664
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.05 E-value=2.3 Score=36.93 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=64.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
..+++|.|+++-=..+...|++.|-.|++.+-.-.......+.. +.+.+.+.+|-. +.+++++.+++..+.-.+
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-GERSMFVRHDVS-----SEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-CTTEEEECCCTT-----CHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-CCCeEEEEeecC-----CHHHHHHHHHHHHHHhCC
Confidence 34566665554444555678889998888765444444445545 777777777642 578888888777666567
Q ss_pred eeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+.. +++|. ....+. .++.+++++..+.
T Consensus 81 iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~v 110 (253)
T d1hxha_ 81 LNV-LVNNAGILLPGDMETGRLEDFSRLLKI 110 (253)
T ss_dssp CCE-EEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCe-EEecccccCCCCcccCCHHHHHHHHHH
Confidence 775 44444 333333 3567778877764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=86.72 E-value=3.1 Score=35.84 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=63.8
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCc-cchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYY-AAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y-~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
-+++|.|+.+-=..+...|++.|-.|++.+-.- ......++.. |.++..+.+|-+ |.+++++.+++..+.-.+
T Consensus 7 valVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvs-----~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 7 LAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-GRRVLTVKCDVS-----QPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc-CCcEEEEEeeCC-----CHHHHHHHHHHHHHHcCC
Confidence 355555555444556677888998888764322 2223334444 888888888743 578888888877666567
Q ss_pred eeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+..+ ++|. ..+.+. -++.++++++.+.
T Consensus 81 iDil-VnnAG~~~~~~~~~~~~e~~~~~~~v 110 (247)
T d2ew8a1 81 CDIL-VNNAGIYPLIPFDELTFEQWKKTFEI 110 (247)
T ss_dssp CCEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEE-EECCCCCCCCChHhCCHHHhhhhhee
Confidence 8854 4554 445443 3577788877764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.33 E-value=5.3 Score=34.39 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=62.7
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHH---HHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDR---DLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~---~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
+++|.|+.+-=..+...|++.|..|++..-.-..... .++.. |.++..+.+|-. +.+++++.+++..++..
T Consensus 13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~-g~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF-GYESSGYAGDVS-----KKEEISEVINKILTEHK 86 (251)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT-TCCEEEEECCTT-----CHHHHHHHHHHHHHHCS
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHHhcC
Confidence 4555555544445557788999888887654333322 23334 778888887743 67889988888777767
Q ss_pred CeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
++..++.+-...+.+. -++.++++++.+.
T Consensus 87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~v 117 (251)
T d2c07a1 87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRT 117 (251)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CceeeeeccccccccccccccHHHHhhhhee
Confidence 8886554333333332 3466777777664
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=3.4 Score=35.83 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=65.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---Hhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
.-+++|.|+++-=..+...|++.|-.|++..-.-...... ++.. .+.+++.+.+|-+ +.+++++.++...+
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls-----~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS-----NEEDILSMFSAIRS 85 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCC-----CHHHHHHHHHHHHH
Confidence 3456666655555556677888998888876544333332 2222 1357888888753 57888888887777
Q ss_pred hCCCeeEEEEeCCCCCcccC--CCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~--~~~~~l~~l~~~ 219 (477)
+..++..++.+-...+.+.. ++.++++...+.
T Consensus 86 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~ 119 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNV 119 (257)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred hcCCCCEEEecccccCCCccccccHHHHHhhhhh
Confidence 66678865544334444443 577788777774
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.85 E-value=5.9 Score=32.17 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=64.4
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCC--CeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPG--DAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~G--d~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
.+++.|++..-+.++......++..|. ..++...+.++.............+.-+.-+ .+..+..+..++..+..+
T Consensus 93 ~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~hG~--~D~~vp~~~~~~~~~~L~ 170 (203)
T d2r8ba1 93 YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPKISPAKPTRRVLITAGE--RDPICPVQLTKALEESLK 170 (203)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCCCCCCCTTCEEEEEEET--TCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccccccccccchhhccccC--CCCcccHHHHHHHHHHHH
Confidence 567888887766666655554443332 4555556555432221121213444444433 233456666666666666
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHhcC
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFINDKN 224 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~~~ 224 (477)
+.+.++....+ | .|.-++.++++++.+|..+||
T Consensus 171 ~~g~~v~~~~~--~---ggH~~~~~~~~~~~~wl~~~g 203 (203)
T d2r8ba1 171 AQGGTVETVWH--P---GGHEIRSGEIDAVRGFLAAYG 203 (203)
T ss_dssp HHSSEEEEEEE--S---SCSSCCHHHHHHHHHHHGGGC
T ss_pred HCCCCEEEEEE--C---CCCcCCHHHHHHHHHHHHhcC
Confidence 66666665444 3 466689999999999999876
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=85.55 E-value=7.7 Score=31.32 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=63.0
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCC--CCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANP--GDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQ 186 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~--Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~ 186 (477)
+++++|++.+.+.++...+..++..+ -..++...|..+.-...........+.-+.-. ++-.+.++..++..+..+
T Consensus 92 ~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~--~D~~vp~~~~~~~~~~l~ 169 (202)
T d2h1ia1 92 FDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLANLAGKSVFIAAGT--NDPICSSAESEELKVLLE 169 (202)
T ss_dssp CCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSSCCCCCCTTCEEEEEEES--SCSSSCHHHHHHHHHHHH
T ss_pred ccccceeeecccccchHHHHHHHhccccccceeeecCCCCcccccccccccchhhccccc--CCCccCHHHHHHHHHHHH
Confidence 67899998877777766655554443 35666666665432222222223343333322 233456666666666555
Q ss_pred HhCCCeeEEEEeCCCCCcccCCCHHHHHHHHHHHHh
Q 011801 187 EASINIKGLIITNPSNPLGTTLDRDTLKSLVSFIND 222 (477)
Q Consensus 187 ~~~~~~k~vii~nP~NPtG~~~~~~~l~~l~~~~~~ 222 (477)
+.+.++..+ ..| .|..++.+.++++.+|..+
T Consensus 170 ~~g~~~~~~--~~~---ggH~~~~~~~~~~~~wl~k 200 (202)
T d2h1ia1 170 NANANVTMH--WEN---RGHQLTMGEVEKAKEWYDK 200 (202)
T ss_dssp TTTCEEEEE--EES---STTSCCHHHHHHHHHHHHH
T ss_pred HCCCCEEEE--EEC---CCCcCCHHHHHHHHHHHHH
Confidence 555555443 333 4778899999999998765
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.06 E-value=3.6 Score=35.39 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=61.5
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEcC-CCccc---hHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhC
Q 011801 114 IVMGGGATGANELIMFCLANPGDAFLVPS-PYYAA---FDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEAS 189 (477)
Q Consensus 114 i~~t~G~t~al~~i~~~l~~~Gd~vlv~~-P~y~~---~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~ 189 (477)
+++|.|+.+-=..+...|++.|-.|++.. ..-.. ....++.. |.++..+.+|-. |.+++++++++..++-
T Consensus 4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~ 77 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY-GGQAITFGGDVS-----KEADVEAMMKTAIDAW 77 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-TCEEEEEECCTT-----SHHHHHHHHHHHHHHS
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc-CCcEEEEeCCCC-----CHHHHHHHHHHHHHHc
Confidence 34455444444455567888998887643 22111 22334445 888888888743 5788998888877776
Q ss_pred CCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 190 INIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 190 ~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++..+ ++|. .++.+. -++.++++++.+.
T Consensus 78 g~iDiL-VnnAg~~~~~~~~~~~~~~~~~~~~v 109 (244)
T d1edoa_ 78 GTIDVV-VNNAGITRDTLLIRMKKSQWDEVIDL 109 (244)
T ss_dssp SCCSEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCcc-ccccccccccchhccchHHHHHHHhh
Confidence 678854 4554 333332 3577888888774
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.67 E-value=3 Score=35.97 Aligned_cols=102 Identities=10% Similarity=0.130 Sum_probs=64.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
-.-+++|+|+++-=..+...|++.|..|++.+-.-...... +... |.++..+.+|-+ |.+.+++.++...+
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~-~~~~~~~~~Dvs-----~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-GAKVHTFVVDCS-----NREDIYSSAKKVKA 80 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCC-----CHHHHHHHHHHHHH
Confidence 34566666666555566677889999999977665433322 3334 778888888753 57888888888777
Q ss_pred hCCCeeEEEEeCCCCCcccCC--CHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGTTL--DRDTLKSLVS 218 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~~--~~~~l~~l~~ 218 (477)
...++..++.+......+... +.++++++.+
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~ 113 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFE 113 (244)
T ss_dssp HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHH
T ss_pred HcCCCceeEeeccccccccccccchhHHHhhcc
Confidence 677788765444434333332 3334444433
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.13 E-value=3.9 Score=35.30 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=63.6
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|.|+.+-=..+...|++.|-.|++..-.=.... ..+... |.++..+.+|-. +.+++++.+++..++-.+
T Consensus 5 lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 5 LVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-GGHAVAVKVDVS-----DRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp EEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHHHTTC
T ss_pred EEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCC-----CHHHHHHHHHHHHHHhCC
Confidence 55665554445556778889988887654322222 223434 788888888753 578888888887766667
Q ss_pred eeEEEEeCC-CCCcccC--CCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~~--~~~~~l~~l~~~ 219 (477)
+..+ ++|. .++.+.. ++.++++++.+.
T Consensus 79 iDil-VnnAG~~~~~~~~~~~~~~~~~~~~v 108 (255)
T d1gega_ 79 FDVI-VNNAGVAPSTPIESITPEIVDKVYNI 108 (255)
T ss_dssp CCEE-EECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred ccEE-EecccccccCcHHHhhhhhhhhhhhh
Confidence 8854 4444 4555543 577888888774
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.38 E-value=4.4 Score=35.93 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=64.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhh-------hCCcEEEEEeccCCCCcccCHHHHHHHHH
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSW-------RTGVQIVPVHCDISNNFKITREALEAAYE 183 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~-------~~g~~~~~v~~~~~~~f~i~~~~l~~~~~ 183 (477)
-.-+++|.|+++-=..+...|++.|-.|++..-.-......++. ..|.+++.+.+|-+ |.++++++++
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs-----~~~~v~~~~~ 86 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR-----NEEEVNNLVK 86 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT-----CHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCC-----CHHHHHHHHH
Confidence 34466666666555556677888998888876543333222211 12678888888753 5788888888
Q ss_pred HHHHhCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 184 RAQEASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 184 ~~~~~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+..+...++..++ +|. .++.+. -++.++++++.+.
T Consensus 87 ~~~~~~G~iDiLV-nnAg~~~~~~~~~~~~e~~~~~~~v 124 (297)
T d1yxma1 87 STLDTFGKINFLV-NNGGGQFLSPAEHISSKGWHAVLET 124 (297)
T ss_dssp HHHHHHSCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHhCCeEEEE-eeccccccCchhhhhhhhhhhhhcc
Confidence 7766655787544 444 333333 2577788877764
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=83.20 E-value=4.7 Score=34.83 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=63.0
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 115 VMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 115 ~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
++|.|+.+-=..+...|++.|-.|++..-.-.... ..++.. |.++..+.+|-+ |.+++++.+++..++-.+
T Consensus 6 lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~-g~~~~~~~~Dvs-----~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 6 LVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVR-----SVPEIEALVAAVVERYGP 79 (257)
T ss_dssp EEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHHHHHTCS
T ss_pred EEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeecC-----CHHHHHHHHHHHHHHhCC
Confidence 55655554444566778889988888765433222 223334 778888888743 678899988887777667
Q ss_pred eeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
+..++ +|. ....+. -++.++++++.+.
T Consensus 80 iDilV-nnAG~~~~~~~~~~~~e~~~~~~~v 109 (257)
T d2rhca1 80 VDVLV-NNAGRPGGGATAELADELWLDVVET 109 (257)
T ss_dssp CSEEE-ECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred CCEEE-ecccccCCCChHHcCHHHHHHHHHH
Confidence 88544 554 333333 2577788877764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.10 E-value=4.6 Score=34.97 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=65.2
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
..+++|.|+++-=..+...|++.|-.|++.+-.-.... ..++.. |.++..+.+|-. +.+++++.+++..++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-GVEARSYVCDVT-----SEEAVIGTVDSVVRD 79 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TSCEEEEECCTT-----CHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCC-----CHHHHHHHHHHHHHH
Confidence 44666666655445566778889988887664322222 233434 778888888743 578888888877665
Q ss_pred CCCeeEEEEeCCCC-CcccC--CCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPSN-PLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~N-PtG~~--~~~~~l~~l~~~ 219 (477)
-.++..++.+...+ +.+.+ ++.++++++.+.
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~v 113 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTI 113 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccc
Confidence 56787655433333 44543 578888888774
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=6.5 Score=33.87 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=64.4
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++-..+++|.|+.+.=..+...|++.|-.|++..-.-.... ..++.. |.++..+.+|-. +.+++++.+++.
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~-g~~~~~~~~Dvs-----~~~~~~~~~~~~ 82 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDIT-----SEQELSALADFA 82 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEccCC-----CHHHHHHHHHHH
Confidence 33344566655554445556778899988888764332222 223434 778888888743 578888888877
Q ss_pred HHhCCCeeEEEEeCCC--CCcccCCCHHHHHHHHHH
Q 011801 186 QEASINIKGLIITNPS--NPLGTTLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~~~~k~vii~nP~--NPtG~~~~~~~l~~l~~~ 219 (477)
.++-.++.. +++|.. .+.-.-++.++++++.+.
T Consensus 83 ~~~~g~iDi-lvnnAG~~~~~~~e~~~e~~~~~~~v 117 (255)
T d1fmca_ 83 ISKLGKVDI-LVNNAGGGGPKPFDMPMADFRRAYEL 117 (255)
T ss_dssp HHHHSSCCE-EEECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred HHHcCCCCE-eeeCCcCCCCCcccCCHHHHHHHHHH
Confidence 666557885 455553 222224677888887774
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.91 E-value=4.7 Score=34.70 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=61.4
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhh-CCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCCC
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWR-TGVQIVPVHCDISNNFKITREALEAAYERAQEASIN 191 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~-~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~~ 191 (477)
-+++|.|+.+-=..+...|++.|..|++..-.-.......+.. .+.++..+.+|-. |.+++++.+++..++-.+
T Consensus 8 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSS-----DEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTT-----CHHHHHHHHHHHHHHHSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCC-----CHHHHHHHHHHHHHHhCC
Confidence 3555555444444555678889998888765433333222221 2446777777643 578888888877666567
Q ss_pred eeEEEEeCC-CCCcccC--CCHHHHHHHHHH
Q 011801 192 IKGLIITNP-SNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 192 ~k~vii~nP-~NPtG~~--~~~~~l~~l~~~ 219 (477)
+..+ ++|. ..+.+.. ++.++++++.+.
T Consensus 83 iDiL-VnnAg~~~~~~~~~~~~~~~~~~~~v 112 (251)
T d1zk4a1 83 VSTL-VNNAGIAVNKSVEETTTAEWRKLLAV 112 (251)
T ss_dssp CCEE-EECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred ceEE-Eeccccccccchhcccccchhhhccc
Confidence 8854 4554 4444433 577788887764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=82.55 E-value=7 Score=33.71 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=64.3
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchH---HHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFD---RDLSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~---~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++-..+++|.|+.+-=..+...|++.|-.|++..-.=.... +.++.. +..+..+.+|-+ +.+++++.+++.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~-~~~~~~~~~D~s-----~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK-GLNVEGSVCDLL-----SRTERDKLMQTV 77 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEeecC-----CHHHHHHHHHHH
Confidence 33456777777665555566678888988888765432222 233434 777777777743 578888887766
Q ss_pred HHhC-CCeeEEEEeCC-CCCcccC--CCHHHHHHHHHH
Q 011801 186 QEAS-INIKGLIITNP-SNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~~-~~~k~vii~nP-~NPtG~~--~~~~~l~~l~~~ 219 (477)
.+.- ..+.. +++|. ..+.+.+ ++.+++++..+.
T Consensus 78 ~~~~~g~idi-linnag~~~~~~~~~~~~~~~~~~~~~ 114 (258)
T d1ae1a_ 78 AHVFDGKLNI-LVNNAGVVIHKEAKDFTEKDYNIIMGT 114 (258)
T ss_dssp HHHTTSCCCE-EEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHhCCCcEE-EeccccccccCccccCCHHHHhhhhhh
Confidence 5543 35554 44444 4444444 477777777764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.19 E-value=5.8 Score=34.03 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHhCC
Q 011801 111 PDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEASI 190 (477)
Q Consensus 111 ~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~~~ 190 (477)
-..+++|.|+++-=..+...|++.|-.|++.+-.-. -...++.. +...++ +|- -|.+++++++++..++-.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~-~~~~~~--~Dv-----~~~~~v~~~~~~~~~~~G 75 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE-GKEVAEAI-GGAFFQ--VDL-----EDERERVRFVEEAAYALG 75 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT-HHHHHHHH-TCEEEE--CCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHHHc-CCeEEE--EeC-----CCHHHHHHHHHHHHHhcC
Confidence 345777776665555666778899988887764322 23344444 666554 442 257888888887766656
Q ss_pred CeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 191 NIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 191 ~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
++.. +++|. .++.+. -++.++++++.+.
T Consensus 76 ~iDi-LVnnAG~~~~~~~~~~~~e~~~~~~~v 106 (248)
T d2d1ya1 76 RVDV-LVNNAAIAAPGSALTVRLPEWRRVLEV 106 (248)
T ss_dssp CCCE-EEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred CCCe-EEEeCcCCCCCChhhCCHHHHHHHHHh
Confidence 7885 45554 233333 3577778877764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.17 E-value=4.1 Score=35.14 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=64.0
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHHh
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQEA 188 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~~ 188 (477)
++-..+++|.|+++-=..+...|++.|-.|++.+-.-.......+ . ..+...+.+|-. |.+++++.+++..++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-~-~~~~~~~~~Dvs-----~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ-E-LPGAVFILCDVT-----QEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-H-CTTEEEEECCTT-----SHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-h-cCCCeEEEccCC-----CHHHHHHHHHHHHHh
Confidence 344557777777665566667788899888887543332333333 2 334556666632 578888888877665
Q ss_pred CCCeeEEEEeCCC-C-Cccc--CCCHHHHHHHHHH
Q 011801 189 SINIKGLIITNPS-N-PLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 189 ~~~~k~vii~nP~-N-PtG~--~~~~~~l~~l~~~ 219 (477)
-.++.. +++|.. . +.+. -++.+++++..+.
T Consensus 77 ~g~iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~~v 110 (250)
T d1ydea1 77 FGRLDC-VVNNAGHHPPPQRPEETSAQGFRQLLEL 110 (250)
T ss_dssp HSCCCE-EEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cCCCCE-EEecccccccccccccccHHHHHHHHHH
Confidence 557875 455553 3 3332 3677888888764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.91 E-value=5.2 Score=34.54 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=61.8
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCcc-chHH---HH-hhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 113 RIVMGGGATGANELIMFCLANPGDAFLVPSPYYA-AFDR---DL-SWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 113 ~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~-~~~~---~~-~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
.+++|.|+.+-=..+...|++.|-.|++..-.-. .... .+ ... |.++..+++|-. |.+++++++++..+
T Consensus 6 ~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLS-----KGEAVRGLVDNAVR 79 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTT-----SHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCC-----CHHHHHHHHHHHHH
Confidence 3555555554444555678889988887664322 1211 12 223 788888888743 57888888887766
Q ss_pred hCCCeeEEEEeCC-CCCccc--CCCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNP-SNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP-~NPtG~--~~~~~~l~~l~~~ 219 (477)
.-.++.. +++|. ..+.+. -++.++++++.+.
T Consensus 80 ~~G~iDi-LVnnAG~~~~~~~~~~~~~~~~~~~~v 113 (260)
T d1x1ta1 80 QMGRIDI-LVNNAGIQHTALIEDFPTEKWDAILAL 113 (260)
T ss_dssp HHSCCSE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HhCCCcE-EEeecccccCCchhhhhHHhhhhhhhc
Confidence 6567885 44544 333343 2577788877764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=80.82 E-value=6.6 Score=33.87 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=64.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH----HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD----LSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~----~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+++-=..+...|++.|-.|++..-.-...... .....+.+++.+.+|-. |.+++++.+++..+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS-----DEAQVEAYVTATTE 79 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCC-----CHHHHHHHHHHHHH
Confidence 3466666665555566677888998888766443322221 11122667888888743 57888888887766
Q ss_pred hCCCeeEEEEeCC--CCCcccC--CCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNP--SNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP--~NPtG~~--~~~~~l~~l~~~ 219 (477)
+-.++.. +++|. ..+.+.. ++.++++++.+.
T Consensus 80 ~~G~iDi-LVnnAG~~~~~~~~~~~~~~~~~~~~~v 114 (258)
T d1iy8a_ 80 RFGRIDG-FFNNAGIEGKQNPTESFTAAEFDKVVSI 114 (258)
T ss_dssp HHSCCSE-EEECCCCCCCCBCGGGSCHHHHHHHHHH
T ss_pred HhCCCCE-EEECCcccccCCchhhhhhhHHHHHhhh
Confidence 6557775 45554 2344533 578888888775
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=80.22 E-value=11 Score=32.32 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=65.0
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++-..+++|.|+.+-=..+...|++.|-.|++.+-.-...... +... |.+...+.+|-. +.+++++++++.
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dv~-----~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK-GFKVEASVCDLS-----SRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCEEEEEECCTT-----CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEeeCC-----CHHHHHHHHHHH
Confidence 4445677777766555566677888998888876443333222 2333 778888887642 578888888776
Q ss_pred HHh-CCCeeEEEEeCCC-CCcc--cCCCHHHHHHHHHH
Q 011801 186 QEA-SINIKGLIITNPS-NPLG--TTLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~-~~~~k~vii~nP~-NPtG--~~~~~~~l~~l~~~ 219 (477)
.++ +.++.. +++|.. .+.+ .-++.++++++.+.
T Consensus 80 ~~~~~~~idi-lvnnAG~~~~~~~~~~~~e~~~~~~~v 116 (259)
T d2ae2a_ 80 ANHFHGKLNI-LVNNAGIVIYKEAKDYTVEDYSLIMSI 116 (259)
T ss_dssp HHHTTTCCCE-EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHhCCCceE-EEECCceeccCccccCCHHHHHHHHhc
Confidence 544 446775 455542 3333 24677888887775
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.15 E-value=5.7 Score=34.25 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=61.1
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCeEEEc-CCCccch---HHHHhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHHHH
Q 011801 112 DRIVMGGGATGANELIMFCLANPGDAFLVP-SPYYAAF---DRDLSWRTGVQIVPVHCDISNNFKITREALEAAYERAQE 187 (477)
Q Consensus 112 ~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~-~P~y~~~---~~~~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~~~ 187 (477)
..+++|.|+.+-=..+...|++.|-.|++. .-.-... ...+... |.+++.+++|-. |.+++++.+++..+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~-g~~~~~~~~D~~-----~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL-GAQGVAIQADIS-----KPSEVVALFDKAVS 80 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc-CCCceEecCCCC-----CHHHHHHHHHHHHH
Confidence 345666665544445556788889877764 3222112 2233434 888889998753 57888888887766
Q ss_pred hCCCeeEEEEeCCCCCcccC--CCHHHHHHHHHH
Q 011801 188 ASINIKGLIITNPSNPLGTT--LDRDTLKSLVSF 219 (477)
Q Consensus 188 ~~~~~k~vii~nP~NPtG~~--~~~~~l~~l~~~ 219 (477)
+..++..++.+....+.+.. .+.++++++.+.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~ 114 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNL 114 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhh
Confidence 66677754433334444433 466677666553
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.09 E-value=8 Score=33.31 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=61.9
Q ss_pred cCCCcEEEeCChHHHHHHHHHHhcCCCCeEEEcCCCccchHHH---HhhhCCcEEEEEeccCCCCcccCHHHHHHHHHHH
Q 011801 109 FDPDRIVMGGGATGANELIMFCLANPGDAFLVPSPYYAAFDRD---LSWRTGVQIVPVHCDISNNFKITREALEAAYERA 185 (477)
Q Consensus 109 ~~~~~i~~t~G~t~al~~i~~~l~~~Gd~vlv~~P~y~~~~~~---~~~~~g~~~~~v~~~~~~~f~i~~~~l~~~~~~~ 185 (477)
++...+++|.|+++-=..+...|++.|-.|++..-.-...... +... +.++..+.+|-+ +.+++++.+++.
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-~~~~~~~~~Dv~-----~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-GFQVTGSVCDAS-----LRPEREKLMQTV 79 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTT-----SHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEeccCC-----CHHHHHHHHHHH
Confidence 3444566666655544556677888998888776543333322 2333 667888887743 567888888776
Q ss_pred HHh-CCCeeEEEEeCCCCCccc--CCCHHHHHHHHHH
Q 011801 186 QEA-SINIKGLIITNPSNPLGT--TLDRDTLKSLVSF 219 (477)
Q Consensus 186 ~~~-~~~~k~vii~nP~NPtG~--~~~~~~l~~l~~~ 219 (477)
.++ +.++..++.+-...+.+. -++.++++++.+.
T Consensus 80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~v 116 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHIST 116 (259)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHH
T ss_pred HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHH
Confidence 554 356776554433333333 3577788887774
|