Citrus Sinensis ID: 011804

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRTALPQGPDKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS
ccHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEEEEEcccccccccccccEEEEcccccccccccccEEEEcccccccHHHcccccEEEEEccccccccEEEEEccccccccccEEEEcccccccccccEEEEEEEEEEccEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
cHHHHHHHHHHHHHHHHHccccEEcccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccEEEEcccHHHHccccccccccccccccEcccccHHHHHccccccccccccccEEEEEEEccccccEEEEEEEEEEEcccccccccEcccEEEEccccccccccccccEEEcccccccHHHHccccEEEEEEccccccccEEEEcccccccccccEEEEEEEccccccEEEEEEEEEEEccEEEEccHHHccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccEEEccEEEEEEEccEEEEcccccEEEEEcccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
MWILSKAFLLFICLLCssnngayaddndlshshivsvssllppnvcnrtrtalpqgpdkaSLEVVSkygpcsrlnqgisthapSLEEILRQDQQRLHlknsrrlrkpfpeflkrteaftfpanindtvadEYYIVVAIGEPKQYVSLLLDtgsdvtwtqckpcihcfqqrdpffyasksktffkipcnstscrilresfpfgncnskecpfniqyadgsgsggfwatDRITIQeansngyftryPFLLGCinnssgdksgasgimgldrspvsiitrtntsyfsyclpspygstgyitfgktdtvnskfikytpivttseqsEFYDIILTGIsvggkklpfntsyftkfgaiidsgniitrlpppIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGfatyppdpnsitlgnvqqrghevhydvagrrlgfgpgncs
MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRtalpqgpdkaSLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQrlhlknsrrlrkpfpeflkrteaftfpanindtVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPivttseqsEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDsgniitrlppPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGrrlgfgpgncs
MWILSKAFLLFICLLCSSNNGAYADDNDlshshivsvssllPPNVCNRTRTALPQGPDKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS
*WILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVC*************************************************************FPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINN**********IMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRL********
*****KAFLLFICLLCSSNNGAYA**NDLSHSHIVSVSS*************************VSKYG******************ILRQDQQRL****************************NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCR*************KECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPY****Y******DTV****IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMK*******LEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS
MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRTALPQGPDKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS
MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPP***************KASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLR****************ANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRTALPQGPDKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.696 0.664 0.347 4e-45
Q766C2438 Aspartic proteinase nepen N/A no 0.767 0.835 0.322 3e-42
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.798 0.810 0.305 8e-39
Q6XBF8437 Aspartic proteinase CDR1 no no 0.771 0.842 0.324 5e-38
Q766C3437 Aspartic proteinase nepen N/A no 0.754 0.823 0.294 7e-38
Q3EBM5447 Probable aspartic proteas no no 0.769 0.821 0.297 3e-31
Q9LZL3453 Aspartic proteinase PCS1 no no 0.679 0.715 0.262 1e-23
Q9S9K4475 Aspartic proteinase-like no no 0.693 0.696 0.260 4e-22
Q9LX20528 Aspartic proteinase-like no no 0.687 0.621 0.229 3e-09
P32951402 Candidapepsin-1 OS=Candid N/A no 0.515 0.611 0.273 2e-08
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  182 bits (463), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 180/354 (50%), Gaps = 22/354 (6%)

Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190
           EY+  + +G P + + L+LDTGSDV W QC+PC  C+QQ DP F  + S T+  + C++ 
Sbjct: 161 EYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCADCYQQSDPVFNPTSSSTYKSLTCSAP 220

Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGC 250
            C +L  S     C S +C + + Y DGS + G  ATD +T     ++G        LGC
Sbjct: 221 QCSLLETS----ACRSNKCLYQVSYGDGSFTVGELATDTVTF---GNSGKINNVA--LGC 271

Query: 251 INNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCL-PSPYGSTGYITFGKTDTVNSKF 309
            +++ G  +GA+G++GL    +SI  +   + FSYCL     G +  + F          
Sbjct: 272 GHDNEGLFTGAAGLLGLGGGVLSITNQMKATSFSYCLVDRDSGKSSSLDFNSVQLGGGD- 330

Query: 310 IKYTPIVTTSEQSEFYDIILTGISVGGKK--LP---FNTSYFTKFGAIIDSGNIITRLPP 364
               P++   +   FY + L+G SVGG+K  LP   F+       G I+D G  +TRL  
Sbjct: 331 -ATAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRLQT 389

Query: 365 PIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRG 424
             Y +LR AF K     KK      L DTCYD S+  TV VP +A HF GG  L+L  + 
Sbjct: 390 QAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPAKN 449

Query: 425 TLV-VASVSQVCLGFATYPPDPNSIT-LGNVQQRGHEVHYDVAGRRLGFGPGNC 476
            L+ V      C  FA   P  +S++ +GNVQQ+G  + YD++   +G     C
Sbjct: 450 YLIPVDDSGTFCFAFA---PTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|P32951|CARP1_CANPA Candidapepsin-1 OS=Candida parapsilosis GN=SAPP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.968 0.972 0.402 7e-91
225430555481 PREDICTED: aspartic proteinase nepenthes 0.953 0.945 0.412 8e-91
22326716474 aspartyl protease family protein [Arabid 0.859 0.864 0.428 5e-89
8979711446 nucleoid DNA-binding protein cnd41-like 0.859 0.919 0.425 1e-88
356524287481 PREDICTED: aspartic proteinase nepenthes 0.968 0.960 0.413 2e-88
224142001490 predicted protein [Populus trichocarpa] 0.909 0.885 0.440 1e-87
356527091482 PREDICTED: aspartic proteinase nepenthes 0.924 0.914 0.416 8e-87
225430551490 PREDICTED: aspartic proteinase nepenthes 0.953 0.928 0.396 1e-85
356527089488 PREDICTED: aspartic proteinase nepenthes 0.840 0.821 0.443 2e-85
24430421502 41 kD chloroplast nucleoid DNA binding p 0.970 0.922 0.398 2e-84
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 194/482 (40%), Positives = 285/482 (59%), Gaps = 20/482 (4%)

Query: 3   ILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRTALPQGPDKASL 62
           +L+   +L +CL    N GA   + D SH+  VS       + C  +  A      K+SL
Sbjct: 7   LLNIIIILCVCLNLGCNEGAQEREIDDSHTIQVSSLFPASSSSCVLSPRA---STTKSSL 63

Query: 63  EVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPA 122
            V  ++G CSRLN G +T +P   EILR DQ R++  +S+  +K     + ++++   PA
Sbjct: 64  HVTHRHGTCSRLNNGKAT-SPDHVEILRLDQARVNSIHSKLSKKLTTNHVSQSQSTDLPA 122

Query: 123 NINDTVADEYYIV-VAIGEPKQYVSLLLDTGSDVTWTQCKPCIH-CFQQRDPFFYASKSK 180
               T+    YIV V +G PK  +SL+ DTGSD+TWTQC+PC+  C+ Q++P F  SKS 
Sbjct: 123 KDGSTLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKST 182

Query: 181 TFFKIPCNSTSCRILRESFP-FGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANS-N 238
           +++ + C+S +C  L  +    G+C++  C + IQY D S S GF A D+ T+  ++  +
Sbjct: 183 SYYNVSCSSAACGSLSSATGNAGSCSASNCIYGIQYGDQSFSVGFLAKDKFTLTSSDVFD 242

Query: 239 GYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSY---FSYCLPSPYGSTG 295
           G +       GC  N+ G  +G +G++GL R  +S  ++T T+Y   FSYCLPS    TG
Sbjct: 243 GVY------FGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASYTG 296

Query: 296 YITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDS 355
           ++TFG      S+ +K+TPI T ++ + FY + +  I+VGG+KLP  ++ F+  GA+IDS
Sbjct: 297 HLTFGSAGI--SRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGALIDS 354

Query: 356 GNIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGG 415
           G +ITRLPP  YAALRS+F  +M KY    G+  +LDTC+DLS ++TV +PK+A  F GG
Sbjct: 355 GTVITRLPPKAYAALRSSFKAKMSKYPTTSGVS-ILDTCFDLSGFKTVTIPKVAFSFSGG 413

Query: 416 VDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 475
             +EL  +G      +SQVCL FA    D N+   GNVQQ+  EV YD AG R+GF P  
Sbjct: 414 AVVELGSKGIFYAFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNG 473

Query: 476 CS 477
           CS
Sbjct: 474 CS 475

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356524287|ref|XP_003530761.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224142001|ref|XP_002324349.1| predicted protein [Populus trichocarpa] gi|222865783|gb|EEF02914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527091|ref|XP_003532147.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|24430421|dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.968 0.974 0.399 7.5e-89
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.943 0.969 0.381 3.3e-70
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.698 0.688 0.375 5.3e-56
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.693 0.682 0.371 2.6e-54
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.687 0.679 0.379 1.7e-52
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.689 0.681 0.372 1.5e-51
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.731 0.698 0.346 4e-51
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.796 0.808 0.307 1.1e-46
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.771 0.842 0.329 9.1e-45
TAIR|locus:2024306449 AT1G09750 [Arabidopsis thalian 0.849 0.902 0.289 5.7e-43
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 192/481 (39%), Positives = 281/481 (58%)

Query:     3 ILSKAFLLFICLLCSSNNGAYADDNDXXXXXXXXXXXXXPPNVCNRTRTALPQGPDKASL 62
             +L+   +L ICL    N+GA   + D               +     R +      K+SL
Sbjct:     7 LLNIIIILCICLNLGCNDGAQERETDSHTIQVSSLLPSSSSSCVLSPRASTT----KSSL 62

Query:    63 EVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPA 122
              V  ++G CSRLN G +T +P   EILR DQ R++  +S+  +K   + +  +++   PA
Sbjct:    63 HVTHRHGTCSRLNNGKAT-SPDHVEILRLDQARVNSIHSKLSKKLATDHVSESKSTDLPA 121

Query:   123 NINDTVADEYYIV-VAIGEPKQYVSLLLDTGSDVTWTQCKPCIH-CFQQRDPFFYASKSK 180
                 T+    YIV V +G PK  +SL+ DTGSD+TWTQC+PC+  C+ Q++P F  SKS 
Sbjct:   122 KDGSTLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKST 181

Query:   181 TFFKIPCNSTSCRILRESFP-FGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNG 239
             +++ + C+S +C  L  +    G+C++  C + IQY D S S GF A ++ T+   NS+ 
Sbjct:   182 SYYNVSCSSAACGSLSSATGNAGSCSASNCIYGIQYGDQSFSVGFLAKEKFTL--TNSDV 239

Query:   240 YFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSY---FSYCLPSPYGSTGY 296
             +   Y    GC  N+ G  +G +G++GL R  +S  ++T T+Y   FSYCLPS    TG+
Sbjct:   240 FDGVY---FGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASYTGH 296

Query:   297 ITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSG 356
             +TFG      S+ +K+TPI T ++ + FY + +  I+VGG+KLP  ++ F+  GA+IDSG
Sbjct:   297 LTFGSAGI--SRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGALIDSG 354

Query:   357 NIITRLPPPIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGV 416
              +ITRLPP  YAALRS+F  +M KY    G+  +LDTC+DLS ++TV +PK+A  F GG 
Sbjct:   355 TVITRLPPKAYAALRSSFKAKMSKYPTTSGVS-ILDTCFDLSGFKTVTIPKVAFSFSGGA 413

Query:   417 DLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
              +EL  +G   V  +SQVCL FA    D N+   GNVQQ+  EV YD AG R+GF P  C
Sbjct:   414 VVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 473

Query:   477 S 477
             S
Sbjct:   474 S 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024306 AT1G09750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 5e-96
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-62
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-54
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-45
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 2e-26
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 7e-24
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 4e-20
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-19
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 8e-18
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 4e-15
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-10
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-07
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 3e-04
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 4e-04
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 4e-04
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 0.003
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.004
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  291 bits (747), Expect = 5e-96
 Identities = 139/352 (39%), Positives = 189/352 (53%), Gaps = 59/352 (16%)

Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190
           EY + V +G P +  ++++DTGSD+TW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGC 250
                             C + + Y DGS + G  ATD +T+    S+     + F  GC
Sbjct: 34  ------------------CLYQVSYGDGSYTTGDLATDTLTL---GSSDVVPGFAF--GC 70

Query: 251 INNSSGDKSGASGIMGLDRSPVSIITRTNTSY---FSYCLPS-PYGSTGYITFGKTDTVN 306
            +++ G   GA+G++GL R  +S+ ++T +SY   FSYCLP     S+GY++FG      
Sbjct: 71  GHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGA-AASV 129

Query: 307 SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPI 366
                +TP+++      FY + LTGISVGG++LP   + F   G IIDSG +ITRLPP  
Sbjct: 130 PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSA 189

Query: 367 YAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTL 426
           YAALR AF   M  Y +A G   +LDTCYDLS + +V VP +++HF GG D+ELD  G L
Sbjct: 190 YAALRDAFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVL 248

Query: 427 -VVASVSQVCLGFA-TYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 476
             V   SQVCL FA T      SI +GNVQQ+   V YDVAG R+GF PG C
Sbjct: 249 YPVDDSSQVCLAFAGTSDDGGLSI-IGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.76
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.78
PF1365090 Asp_protease_2: Aspartyl protease 94.41
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.97
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.26
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 90.12
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 88.0
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 83.82
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 83.22
PF1365090 Asp_protease_2: Aspartyl protease 80.63
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 80.37
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.1e-76  Score=611.86  Aligned_cols=394  Identities=30%  Similarity=0.558  Sum_probs=325.6

Q ss_pred             CceEEEEEcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhcccccCCCCccccCCcceeeeeccCCCCC-ceEEEEE
Q 011804           58 DKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVA-DEYYIVV  136 (477)
Q Consensus        58 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~d~~R~~~~~~~r~~~~~~~~~~~~~~~~~p~~~~~~~~-~~Y~~~v  136 (477)
                      ++++++|+||++||+|+.+.+.+..+.++++++|+++|++++.+ +...            ..|+..+...+ ++|+++|
T Consensus        23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~------------~~~~~~~~~~~~~~Y~v~i   89 (431)
T PLN03146         23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDAS------------PNDPQSDLISNGGEYLMNI   89 (431)
T ss_pred             CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-cccc------------CCccccCcccCCccEEEEE
Confidence            57999999999999998644444567788999999999988865 3211            12333333344 8999999


Q ss_pred             EECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCC-CCCCcceec
Q 011804          137 AIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNS-KECPFNIQY  215 (477)
Q Consensus       137 ~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~-~~c~y~~~Y  215 (477)
                      +||||+|++.|+|||||+++||||++|..|+.|.++.|||++|+||+.++|+++.|..+...   ..|.. +.|.|.+.|
T Consensus        90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~---~~c~~~~~c~y~i~Y  166 (431)
T PLN03146         90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ---ASCSDENTCTYSYSY  166 (431)
T ss_pred             EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC---CCCCCCCCCeeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999876531   24754 569999999


Q ss_pred             CCCCeEeEeEEEEEEEEcccCCC-ceeeecCeEEEEEecCCCCCC-CCCceeecCCCCccceeeccccc---eEEecCCC
Q 011804          216 ADGSGSGGFWATDRITIQEANSN-GYFTRYPFLLGCINNSSGDKS-GASGIMGLDRSPVSIITRTNTSY---FSYCLPSP  290 (477)
Q Consensus       216 gdgs~~~G~~~~Dtltl~~~~~~-~~v~~~~~~fG~~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~~---FS~cL~~~  290 (477)
                      +||+.+.|++++|+|+|++..++ ..++  ++.|||++++.+.|. ..+||||||++++|+++|+....   |||||++.
T Consensus       167 gdgs~~~G~l~~Dtltlg~~~~~~~~v~--~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~  244 (431)
T PLN03146        167 GDGSFTKGNLAVETLTIGSTSGRPVSFP--GIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPL  244 (431)
T ss_pred             CCCCceeeEEEEEEEEeccCCCCcceeC--CEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCC
Confidence            99998899999999999875321 2467  999999999988775 58999999999999999987543   99999763


Q ss_pred             C---CCcceEEeccccccCCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCccc---CCCEEEeccccceeccH
Q 011804          291 Y---GSTGYITFGKTDTVNSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFT---KFGAIIDSGNIITRLPP  364 (477)
Q Consensus       291 ~---~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~---~g~~iiDSGT~~t~LP~  364 (477)
                      .   ...|.|+||+........+.||||+.+.. +.+|+|.|++|+||+++++++...|.   .+++||||||++|+||+
T Consensus       245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~  323 (431)
T PLN03146        245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS  323 (431)
T ss_pred             CCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence            2   24799999995322234589999986432 57999999999999999998877652   35899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccccCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEEEEEecCCC
Q 011804          365 PIYAALRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPD  444 (477)
Q Consensus       365 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~  444 (477)
                      ++|++|+++|.+.+...+..... ..+++||+...  ...+|+|+|+| +|+++.|++++|+++...+..|+++...   
T Consensus       324 ~~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~---  396 (431)
T PLN03146        324 DFYSELESAVEEAIGGERVSDPQ-GLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAMIPT---  396 (431)
T ss_pred             HHHHHHHHHHHHHhccccCCCCC-CCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEEecC---
Confidence            99999999999988653333333 45789998542  25799999999 5899999999999988767899998865   


Q ss_pred             CCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011804          445 PNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS  477 (477)
Q Consensus       445 ~~~~IlG~~f~~~~~vvfD~~~~rIGFa~~~C~  477 (477)
                      .+.||||+.|||++||+||++++||||++.+|+
T Consensus       397 ~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        397 SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            235999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 2e-09
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 2e-09
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 4e-09
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 7e-08
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 1e-07
3vla_A413 Crystal Structure Of Edgp Length = 413 2e-07
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 3e-06
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 5e-06
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 5e-06
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 6e-06
3tpj_A433 Apo Structure Of Bace1 Length = 433 6e-06
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 6e-06
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 1e-05
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 1e-05
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 1e-05
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 1e-05
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 1e-05
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 1e-05
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 1e-05
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 1e-05
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 1e-05
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 1e-05
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 1e-05
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 1e-05
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 1e-05
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 1e-05
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 1e-05
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 1e-05
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 1e-05
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 1e-05
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 1e-05
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 1e-05
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 1e-05
2qu2_A415 Bace1 With Compound 1 Length = 415 1e-05
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 1e-05
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 1e-05
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 1e-05
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 1e-05
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 1e-05
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 1e-05
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 2e-05
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 2e-05
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 2e-05
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-05
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 2e-05
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 2e-05
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 2e-05
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 2e-05
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 3e-05
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-05
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 4e-05
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 6e-05
1wkr_A340 Crystal Structure Of Aspartic Proteinase From Irpex 2e-04
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 5e-04
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 138/375 (36%), Gaps = 79/375 (21%)
Query: 146 SLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCN 205
           SL+LD    + W+ C                   +   +IPC+S +C +L  ++P   C 
Sbjct: 25  SLVLDVAGPLVWSTCD----------------GGQPPAEIPCSSPTC-LLANAYPAPGCP 67
Query: 206 SKEC------------PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRY--PFLLGCI 251
           +  C            P+N     G+ + G  +  R      + +   ++     L  C 
Sbjct: 68  APSCGSDKHDKPCTAYPYN--PVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125
Query: 252 NNS--SGDKSGASGIMGLDRSPVSIITRTNTSY-----FSYCLPSPYGSTGYITFGKTDT 304
            +   +    G++G+ GL  S +++  +  ++      F  CLP+  G  G   FG    
Sbjct: 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT--GGPGVAIFGGGPV 183
Query: 305 VNSKF---IKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITR 361
              +F   + YTP+VT       Y I    I VG  ++P         G ++      TR
Sbjct: 184 PWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGDTRVPVPEGALATGGVMLS-----TR 237
Query: 362 LP-----PPIYAALRSAFHKRMKKYKK-----AKGLEDL--LDTCYD-------LSAYET 402
           LP     P +Y  L  AF K +          A+ +E +     CYD       L  Y  
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA- 296
Query: 403 VVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGF------ATYPPDPNSITLGNVQQR 456
             VP + +   GG D  +  + ++V       C+ F      A       ++ LG  Q  
Sbjct: 297 --VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQME 354
Query: 457 GHEVHYDVAGRRLGF 471
              + +D+  +RLGF
Sbjct: 355 DFVLDFDMEKKRLGF 369
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-83
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 4e-74
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-71
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-28
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-28
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-27
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-27
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-26
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 5e-26
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 1e-24
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-22
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 4e-22
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-20
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 4e-20
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-19
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-19
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 7e-19
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-18
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-17
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 3e-17
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 4e-17
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-16
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 1e-16
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-16
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-16
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-16
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-16
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-15
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-15
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-15
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 5e-15
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 2e-13
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  262 bits (670), Expect = 2e-83
 Identities = 67/394 (17%), Positives = 125/394 (31%), Gaps = 39/394 (9%)

Query: 113 KRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDP 172
           K       P   + +    ++  +    P   V +L+D   +  W  C+        + P
Sbjct: 5   KPINLVVLPVQNDGSTG-LHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 173 FFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP-FNIQYADGSGSGGFWATDRIT 231
           F ++++        C S              C+   C   +          G    D + 
Sbjct: 64  FCHSTQCSRANTHQCLSCPAA------SRPGCHKNTCGLMSTNPITQQTGLGELGEDVLA 117

Query: 232 IQEANSNGYFTRYP-----FLLGCINNSSGDK---SGASGIMGLDRSPVSIITRTNTSY- 282
           I     +            FL  C  +    K       G+ GL  +P+S+  +  + + 
Sbjct: 118 IHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFG 177

Query: 283 ----FSYCLPSPYGSTGYITFG--------KTDTVNSKFIKYTPIVTTSEQSEFYDIILT 330
               F+ CL     S G I FG          +      + +TP+  T +    Y++ + 
Sbjct: 178 LQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQG--EYNVRVN 235

Query: 331 GISVGGKKLPFNTSYF------TKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKA 384
            I +    +             T  G +I +      L   +Y A    F +++ K  + 
Sbjct: 236 SIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQV 295

Query: 385 KGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPD 444
           K +      C++ +         + +    G    +     +V A     CLG       
Sbjct: 296 KSVAP-FGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQ 354

Query: 445 PNS-ITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 477
           P + ITLG  Q   + V +D+A  R+GF   +  
Sbjct: 355 PRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.65
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 89.14
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 88.13
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=8.4e-64  Score=518.72  Aligned_cols=343  Identities=24%  Similarity=0.406  Sum_probs=285.5

Q ss_pred             CcceeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeecCCCCCccCCCCCCccCCCCCccceecCCCccccc
Q 011804          115 TEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRI  194 (477)
Q Consensus       115 ~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~  194 (477)
                      .+.+.+|+..+ ..+++|+++|+||||+|++.|+|||||+++||+|++|             .+|+||+.++|.++.|..
T Consensus         6 ~~~~~~pv~~d-~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~   71 (413)
T 3vla_A            6 PSALVVPVKKD-ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL   71 (413)
T ss_dssp             CSEEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred             CccEEEEeeec-CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence            34578898876 3459999999999999999999999999999999976             379999999999999987


Q ss_pred             cccCC-------CCCCCCCCCCCcceec-CCCCeEeEeEEEEEEEEcccCCC-----ceeeecCeEEEEEecC--CCCCC
Q 011804          195 LRESF-------PFGNCNSKECPFNIQY-ADGSGSGGFWATDRITIQEANSN-----GYFTRYPFLLGCINNS--SGDKS  259 (477)
Q Consensus       195 ~~~~~-------~~~~C~~~~c~y~~~Y-gdgs~~~G~~~~Dtltl~~~~~~-----~~v~~~~~~fG~~~~~--~g~~~  259 (477)
                      ...+.       ..+.|.++.|.|.+.| +||+.+.|++++|+|+|+..+++     ..++  ++.|||++.+  .+.+.
T Consensus        72 ~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~--~~~FGc~~~~~~~g~~~  149 (413)
T 3vla_A           72 SGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP--RFIFSCAPTSLLQNLAS  149 (413)
T ss_dssp             TTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEE--EEEEEEECGGGGTTSCT
T ss_pred             cccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeC--CEEEECcccccccCccc
Confidence            65321       0125666779999999 48888999999999999854332     1466  9999999986  45667


Q ss_pred             CCCceeecCCCCccceeecccc-----ceEEecCCCCCCcceEEecccccc------CCCC-eeEeecccCCCC------
Q 011804          260 GASGIMGLDRSPVSIITRTNTS-----YFSYCLPSPYGSTGYITFGKTDTV------NSKF-IKYTPIVTTSEQ------  321 (477)
Q Consensus       260 ~~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~------~~~~-~~~tpl~~~~~~------  321 (477)
                      .++||||||++++|+++|+..+     .|||||++....+|.|+||+.|..      +.+. +.||||+.++..      
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~  229 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST  229 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence            8999999999999999998763     399999986556899999998753      4567 999999987532      


Q ss_pred             ----CeeEEEEEEEEEECCEEeecCCCccc-----CCCEEEeccccceeccHHHHHHHHHHHHHHhh--hcccccCCCcc
Q 011804          322 ----SEFYDIILTGISVGGKKLPFNTSYFT-----KFGAIIDSGNIITRLPPPIYAALRSAFHKRMK--KYKKAKGLEDL  390 (477)
Q Consensus       322 ----~~~y~v~l~gIsvgg~~l~~~~~~f~-----~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~--~~~~~~~~~~~  390 (477)
                          ..+|+|+|++|+||++.+.+++..|.     .+++||||||++|+||+++|++|+++|.+++.  .++...+. ..
T Consensus       230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-~~  308 (413)
T 3vla_A          230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-AP  308 (413)
T ss_dssp             TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCC-TT
T ss_pred             ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCC-CC
Confidence                27999999999999999998877663     25899999999999999999999999999875  34444444 56


Q ss_pred             ccceeeccCCcc----cccCeEEEEEcC-CcEEEEcCCCeEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEEEC
Q 011804          391 LDTCYDLSAYET----VVVPKIAIHFLG-GVDLELDVRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDV  464 (477)
Q Consensus       391 ~~~Cy~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~l~~~~~~~~Cl~~~~~~~~-~~~~IlG~~f~~~~~vvfD~  464 (477)
                      ++.||+.++...    ..+|+|+|+|+| +++++|++++|+++.+.+..|++|...... .+.||||++|||++|+|||+
T Consensus       309 ~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~  388 (413)
T 3vla_A          309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDL  388 (413)
T ss_dssp             CSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEET
T ss_pred             CcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEEC
Confidence            789999876542    579999999965 489999999999987667899999876422 35799999999999999999


Q ss_pred             CCCEEEEeeC
Q 011804          465 AGRRLGFGPG  474 (477)
Q Consensus       465 ~~~rIGFa~~  474 (477)
                      +++|||||++
T Consensus       389 ~~~riGfa~~  398 (413)
T 3vla_A          389 ATSRVGFSGT  398 (413)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 8e-53
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 4e-38
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-33
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 6e-33
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-32
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 4e-32
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 5e-32
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 7e-32
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-31
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 2e-31
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-30
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-30
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-30
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 8e-30
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-29
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 8e-29
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-28
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-28
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 3e-28
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-27
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-25
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 1e-24
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  180 bits (457), Expect = 8e-53
 Identities = 66/374 (17%), Positives = 117/374 (31%), Gaps = 40/374 (10%)

Query: 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFK 184
            D     Y I    G       L+LD    + W+ C       +          +  +  
Sbjct: 9   KDPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPA 63

Query: 185 IPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSN--GYFT 242
             C + SC            +     +      G+ + G  +  R      + +      
Sbjct: 64  PGCPAPSCG-------SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKV 116

Query: 243 RYPFLLGCINNSSGD--KSGASGIMGLDRSPVSIITRTNTSY-----FSYCLPSPYGSTG 295
               L  C  +        G++G+ GL  S +++  +  ++      F  CLP+      
Sbjct: 117 NVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVA 176

Query: 296 YITFGKTDTVN-SKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIID 354
               G       ++ + YTP+VT    S  + I    I VG  ++P         G ++ 
Sbjct: 177 IFGGGPVPWPQFTQSMPYTPLVTKG-GSPAHYISARSIVVGDTRVPVPEGALATGGVMLS 235

Query: 355 SGNIITRLPPPIYAALRSAFHKRMKKYK-------KAKGLEDLLDTCYDLSAYE----TV 403
           +      L P +Y  L  AF K +           +A         CYD           
Sbjct: 236 TRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGY 295

Query: 404 VVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFAT------YPPDPNSITLGNVQQRG 457
            VP + +   GG D  +  + ++V       C+ F              ++ LG  Q   
Sbjct: 296 AVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMED 355

Query: 458 HEVHYDVAGRRLGF 471
             + +D+  +RLGF
Sbjct: 356 FVLDFDMEKKRLGF 369
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.7e-56  Score=452.46  Aligned_cols=339  Identities=21%  Similarity=0.336  Sum_probs=264.5

Q ss_pred             CCHHHHHHHHHHHHHhhhcc--cccCCCCccccCCcceeeeeccCCCCCceEEEEEEECCCCcEEEEEEEcCCCceeeec
Q 011804           83 PSLEEILRQDQQRLHLKNSR--RLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQC  160 (477)
Q Consensus        83 ~~~~~~~~~d~~R~~~~~~~--r~~~~~~~~~~~~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c  160 (477)
                      ++++|.++++..+.++++.|  +.++.... .........|  +.++.+.+|+++|.||||+|++.|++||||+++||+|
T Consensus        10 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~   86 (370)
T d3psga_          10 KSLRQNLIKDGKLKDFLKTHKHNPASKYFP-EAAALIGDEP--LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPS   86 (370)
T ss_dssp             CCHHHHHHHTTCHHHHHHHCCCCGGGGTCT-TSCCSSCCCT--TGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred             ccHHHHHHHcCcHHHHHHhcccchhhhhcc-cccCcccccc--cccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEEC
Confidence            35788888887777776652  11110000 0111112233  3445678999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCccCCCCCccceecCCCccccccccCCCCCCCCCCCCCcceecCCCCeEeEeEEEEEEEEcccCCCce
Q 011804          161 KPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY  240 (477)
Q Consensus       161 ~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~  240 (477)
                      ++|..|..+.++.|||++|+||+...                      |.|.+.|++|+ +.|.+++|++++++..    
T Consensus        87 ~~C~~~~~~~~~~yd~~~Sst~~~~~----------------------~~~~~~Yg~Gs-~~G~~~~d~~~~~~~~----  139 (370)
T d3psga_          87 VYCSSLACSDHNQFNPDDSSTFEATS----------------------QELSITYGTGS-MTGILGYDTVQVGGIS----  139 (370)
T ss_dssp             TTCCSGGGTTSCCBCGGGCTTCEEEE----------------------EEEEEESSSCE-EEEEEEEEEEEETTEE----
T ss_pred             ccCCCcccccccccCCCcccccccCC----------------------CcEEEEeCCce-EEEEEEEEEEeeecee----
Confidence            99999888888999999999999863                      78999999996 8999999999998875    


Q ss_pred             eeecCeEEEEEecCCCCC---CCCCceeecCCCCccc------eeecccc------ceEEecCCCCCCcceEEecccccc
Q 011804          241 FTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVSI------ITRTNTS------YFSYCLPSPYGSTGYITFGKTDTV  305 (477)
Q Consensus       241 v~~~~~~fG~~~~~~g~~---~~~~GilGLg~~~~Sl------~sQ~~~~------~FS~cL~~~~~~~G~L~fGg~d~~  305 (477)
                      ++  ++.|||++...+.+   ...+||+|||++..+.      +.++..+      .||+|+.+....+|.|+|||+|+.
T Consensus       140 ~~--~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~  217 (370)
T d3psga_         140 DT--NQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSS  217 (370)
T ss_dssp             EE--EEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGG
T ss_pred             ee--eeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCch
Confidence            78  99999999887643   3689999999876542      2222222      199999987777899999999986


Q ss_pred             -CCCCeeEeecccCCCCCeeEEEEEEEEEECCEEeecCCCcccCCCEEEeccccceeccHHHHHHHHHHHHHHhhhcccc
Q 011804          306 -NSKFIKYTPIVTTSEQSEFYDIILTGISVGGKKLPFNTSYFTKFGAIIDSGNIITRLPPPIYAALRSAFHKRMKKYKKA  384 (477)
Q Consensus       306 -~~~~~~~tpl~~~~~~~~~y~v~l~gIsvgg~~l~~~~~~f~~g~~iiDSGT~~t~LP~~~y~~l~~~~~~~~~~~~~~  384 (477)
                       +.+++.|+|+..    ..+|.|.+++|.++++.+.....    ..+||||||++++||+++|++|++++.+.    ...
T Consensus       218 ~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~lp~~~~~~i~~~l~~~----~~~  285 (370)
T d3psga_         218 YYTGSLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGAS----ENS  285 (370)
T ss_dssp             GBSSCCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCE----ECT
T ss_pred             hcccceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeCCHHHHHHHHHHhCCe----eec
Confidence             789999999987    67899999999999988764322    36999999999999999999999988653    122


Q ss_pred             cCCCccccceeeccCCcccccCeEEEEEcCCcEEEEcCCCeEEEeCCCeEEE-EEEecC---CCCCeeeechhhhcceEE
Q 011804          385 KGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCL-GFATYP---PDPNSITLGNVQQRGHEV  460 (477)
Q Consensus       385 ~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~l~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~~~v  460 (477)
                      .+.       |.++|.....+|+|+|+| ||+++.|++++|+++.  +..|+ +|....   ...+.||||++|||++|+
T Consensus       286 ~~~-------~~~~C~~~~~~P~l~f~f-~g~~~~l~~~~yi~~~--~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~  355 (370)
T d3psga_         286 DGE-------MVISCSSIDSLPDIVFTI-DGVQYPLSPSAYILQD--DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYT  355 (370)
T ss_dssp             TCC-------EECCGGGGGGCCCEEEEE-TTEEEEECHHHHEEEC--SSCEEESEEEECCCTTSCCEEEECHHHHTTEEE
T ss_pred             CCc-------EEEeccccCCCceEEEEE-CCEEEEEChHHeEEEc--CCeEEEEEEEcccCCCCCCcEEECHHhhcCEEE
Confidence            222       444555556799999999 8999999999999875  34575 565432   345679999999999999


Q ss_pred             EEECCCCEEEEeeCC
Q 011804          461 HYDVAGRRLGFGPGN  475 (477)
Q Consensus       461 vfD~~~~rIGFa~~~  475 (477)
                      +||++++||||||++
T Consensus       356 vfD~~~~~IGfAp~a  370 (370)
T d3psga_         356 VFDRANNKVGLAPVA  370 (370)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEECCCCEEEEEecC
Confidence            999999999999974
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure