Citrus Sinensis ID: 011806

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MDRAIHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLSP
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEEccccEEEEEccccccEEEEcccccccccEEEEEEEEEEccccccccEEEEEEEcccccccccEEEccccccccccccccEEEEEEEEEEccccccccccEEcccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccHHHHHHHHHHccc
ccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHEEEEHHHHHHcccccEEEEEEEcHccccHHHHcccHHHHHHHccHHHcccEEEEEEEccccccccccccEEEEEEcccccEEEEEcccccccEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEccccccccccEEEccccccccEEcccccEEEEcccEccHHHHHccccEccccccEEccccccccccEEHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccEEEEEccccHHHEEEEEccc
MDRAIHRTIIIknhllqpnsdqilttnaclsysppelnevydFDLKEMRKLLDGHNLQERDWLFNLMVQSklfnprkrgekvyvapdynqtMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGgaiqffgtqrhHEKWLRDTENYVVLGCFAmtelghgsnvrgietvttydantgefiintpcesaqkywiggaanhaTHTIVFSQLEINGKNQGVHAFICQIRDaagnicpniriadcghkiglngvdngriwfdnvriprenllnsvadvspdgqylssikdpdQRFAAfmapltsgrvIIAGSSVYKAKIGLAIAIRYSLsrrafsitpngpevllldypshqrRLLPLLAKSYAASCAANYLKMMyvnrtpqsnktIHVVSSAFKAILTWHNMRTLQECReacggqglktenrvghlkgefdvqltfegdnnVLMQQVLLSP
MDRAIHRTIiiknhllqpnsDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQsklfnprkrgekvyvapdynqtmEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTelghgsnvrgIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVqltfegdnnvlmqqvllsp
MDRAIHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTakgaeaelrklalleVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLSP
****IHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYN********MTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQ*****
*****HR***IK*****************************DFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSR*A***********LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS*
MDRAIHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLSP
*DRAIHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS*
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MDRAIHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
P0CZ23 675 Acyl-coenzyme A oxidase 3 yes no 0.989 0.699 0.785 0.0
Q9LMI7 675 Putative acyl-coenzyme A no no 0.983 0.694 0.756 0.0
O64894 690 Acyl-coenzyme A oxidase, N/A no 0.788 0.544 0.444 5e-87
O65201 692 Acyl-coenzyme A oxidase 2 no no 0.737 0.508 0.450 7e-84
O74936 700 Acyl-coenzyme A oxidase 3 yes no 0.851 0.58 0.391 6e-77
Q9NUZ1 547 Acyl-coenzyme A oxidase-l yes no 0.788 0.687 0.393 4e-76
O15254 700 Peroxisomal acyl-coenzyme yes no 0.874 0.595 0.360 2e-75
Q5RAU0 700 Peroxisomal acyl-coenzyme yes no 0.872 0.594 0.360 4e-75
Q9DBS4 632 Acyl-coenzyme A oxidase-l yes no 0.742 0.560 0.425 9e-75
Q9EPL9 700 Peroxisomal acyl-coenzyme no no 0.788 0.537 0.370 4e-71
>sp|P0CZ23|ACOX3_ARATH Acyl-coenzyme A oxidase 3, peroxisomal OS=Arabidopsis thaliana GN=ACX3 PE=1 SV=1 Back     alignment and function desciption
 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/475 (78%), Positives = 421/475 (88%), Gaps = 3/475 (0%)

Query: 2   DRAIHRTIIIKNHLLQ---PNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQ 58
           +RA+ R  ++ NH+LQ   P+S+  L+   CL YSPPELNE Y FD+KEMRKLLDGHN+ 
Sbjct: 4   NRALRRAHVLANHILQSNPPSSNPSLSRELCLQYSPPELNESYGFDVKEMRKLLDGHNVV 63

Query: 59  ERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTA 118
           +RDW++ LM+QS LFN ++RG K++V+PDYNQTMEQQRE+TMKRI YLLE  VF+GWLT 
Sbjct: 64  DRDWIYGLMMQSNLFNRKERGGKIFVSPDYNQTMEQQREITMKRIWYLLENGVFKGWLTE 123

Query: 119 KGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVL 178
            G EAELRKLALLEV GI+DHS++IK+GVHFFLWG A++FFGT+RHHEKWL++TE+YVV 
Sbjct: 124 TGPEAELRKLALLEVCGIYDHSVSIKVGVHFFLWGNAVKFFGTKRHHEKWLKNTEDYVVK 183

Query: 179 GCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQL 238
           GCFAMTELGHGSNVRGIETVTTYD  T EF+INTPCESAQKYWIGGAANHATHTIVFSQL
Sbjct: 184 GCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQL 243

Query: 239 EINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLN 298
            ING NQGVHAFI QIRD  G+ICPNIRIADCGHKIGLNGVDNGRIWFDN+RIPRENLLN
Sbjct: 244 HINGTNQGVHAFIAQIRDQDGSICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLN 303

Query: 299 SVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRA 358
           +VADVS DG+Y+SSIKDPDQRF AFMAPLTSGRV IA S++Y AK+GL+IAIRYSLSRRA
Sbjct: 304 AVADVSSDGKYVSSIKDPDQRFGAFMAPLTSGRVTIASSAIYSAKVGLSIAIRYSLSRRA 363

Query: 359 FSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSA 418
           FS+T NGPEVLLLDYPSHQRRLLPLLAK+YA S AAN LKM+YV RTP++NK IHVVSS 
Sbjct: 364 FSVTANGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANELKMIYVKRTPETNKAIHVVSSG 423

Query: 419 FKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
           FKA+LTWHNM TLQECREA GGQG+KTEN VG LKGEFDVQ TFEGDNNVLMQQV
Sbjct: 424 FKAVLTWHNMHTLQECREAVGGQGVKTENLVGQLKGEFDVQTTFEGDNNVLMQQV 478
Catalyzes the desaturation of medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on C8:0- to C14:0-CoA with a maximal activity on C12:0-CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q9LMI7|ACO32_ARATH Putative acyl-coenzyme A oxidase 3.2, peroxisomal OS=Arabidopsis thaliana GN=ACX3.2 PE=3 SV=1 Back     alignment and function description
>sp|O64894|ACOX2_CUCMA Acyl-coenzyme A oxidase, peroxisomal OS=Cucurbita maxima GN=Acx PE=1 SV=1 Back     alignment and function description
>sp|O65201|ACOX2_ARATH Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana GN=ACX2 PE=1 SV=2 Back     alignment and function description
>sp|O74936|ACOX3_YARLI Acyl-coenzyme A oxidase 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=POX3 PE=1 SV=1 Back     alignment and function description
>sp|Q9NUZ1|ACOXL_HUMAN Acyl-coenzyme A oxidase-like protein OS=Homo sapiens GN=ACOXL PE=2 SV=3 Back     alignment and function description
>sp|O15254|ACOX3_HUMAN Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2 Back     alignment and function description
>sp|Q5RAU0|ACOX3_PONAB Peroxisomal acyl-coenzyme A oxidase 3 OS=Pongo abelii GN=ACOX3 PE=2 SV=1 Back     alignment and function description
>sp|Q9DBS4|ACOXL_MOUSE Acyl-coenzyme A oxidase-like protein OS=Mus musculus GN=Acoxl PE=2 SV=1 Back     alignment and function description
>sp|Q9EPL9|ACOX3_MOUSE Peroxisomal acyl-coenzyme A oxidase 3 OS=Mus musculus GN=Acox3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
402715754 672 acyl-CoA oxidase 3 [Prunus persica] 0.991 0.703 0.807 0.0
224121860 680 predicted protein [Populus trichocarpa] 0.991 0.695 0.808 0.0
82569448 674 putative medium chain acyl-CoA oxidase [ 0.991 0.701 0.793 0.0
225446509 691 PREDICTED: acyl-coenzyme A oxidase 3, pe 0.989 0.683 0.787 0.0
8163758 675 acyl-CoA oxidase ACX3 [Arabidopsis thali 0.989 0.699 0.785 0.0
15220946 675 acyl-coenzyme A oxidase 3 [Arabidopsis t 0.989 0.699 0.785 0.0
224145287 680 predicted protein [Populus trichocarpa] 0.991 0.695 0.783 0.0
297843432 675 acyl-CoA oxidase ACX3 [Arabidopsis lyrat 0.989 0.699 0.785 0.0
356517450 675 PREDICTED: acyl-coenzyme A oxidase 3, pe 0.989 0.699 0.761 0.0
22329367 675 acyl-CoA oxidase [Arabidopsis thaliana] 0.983 0.694 0.756 0.0
>gi|402715754|gb|AFQ93695.1| acyl-CoA oxidase 3 [Prunus persica] Back     alignment and taxonomy information
 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/473 (80%), Positives = 427/473 (90%)

Query: 1   MDRAIHRTIIIKNHLLQPNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQER 60
           MDR   RT ++ NHL QP+    L+ N C+ +SPPEL+E ++FD KEMRKLLD HNL++R
Sbjct: 1   MDRVTWRTQVLSNHLNQPSMSSPLSPNPCVGFSPPELSEPFEFDTKEMRKLLDAHNLEDR 60

Query: 61  DWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKG 120
           DWLF LM QSK FNPR+ G +V+V+PDYNQ+MEQQREMTMKRI+YLL+R VFEGWLT KG
Sbjct: 61  DWLFGLMKQSKPFNPREAGGRVFVSPDYNQSMEQQREMTMKRIAYLLDRGVFEGWLTEKG 120

Query: 121 AEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGC 180
            EAELRKLAL EV GI+DHSL++K+GVHFFLWGGAIQFFGT+RHH+KWLRDTENY + GC
Sbjct: 121 VEAELRKLALHEVIGIYDHSLSVKLGVHFFLWGGAIQFFGTKRHHDKWLRDTENYTIKGC 180

Query: 181 FAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEI 240
           FAM+ELGHGSNVRGIETVTTYD+NTGEF+INTPCESAQKYWIGGAANHATHTIVFSQL I
Sbjct: 181 FAMSELGHGSNVRGIETVTTYDSNTGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNI 240

Query: 241 NGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSV 300
           +GKN GVHAFI QIRDA GNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSV
Sbjct: 241 SGKNHGVHAFIAQIRDANGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSV 300

Query: 301 ADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360
           ADVSPDGQYLS+IKDPDQRFAAF+APLTSGRV IA  ++  ++I LAIAIRYSL+RRAFS
Sbjct: 301 ADVSPDGQYLSAIKDPDQRFAAFLAPLTSGRVTIAVGAILSSQISLAIAIRYSLTRRAFS 360

Query: 361 ITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFK 420
           +TP GPEVLLLDYPSHQ+RLLPLLAK+YA S AAN+LKM+YV RTP+ +KTIHVVSSAFK
Sbjct: 361 VTPKGPEVLLLDYPSHQQRLLPLLAKTYAMSFAANHLKMIYVKRTPELSKTIHVVSSAFK 420

Query: 421 AILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
           A LTWHNMRTLQECREACGGQGLKTENR+G LKGE+DVQ TFEGDNNVLMQQV
Sbjct: 421 ATLTWHNMRTLQECREACGGQGLKTENRIGPLKGEYDVQSTFEGDNNVLMQQV 473

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121860|ref|XP_002330671.1| predicted protein [Populus trichocarpa] gi|222872275|gb|EEF09406.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|82569448|gb|ABB83366.1| putative medium chain acyl-CoA oxidase [Malus x domestica] Back     alignment and taxonomy information
>gi|225446509|ref|XP_002278663.1| PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal [Vitis vinifera] Back     alignment and taxonomy information
>gi|8163758|gb|AAF73843.1|AF207994_1 acyl-CoA oxidase ACX3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15220946|ref|NP_172119.1| acyl-coenzyme A oxidase 3 [Arabidopsis thaliana] gi|342161829|sp|P0CZ23.1|ACOX3_ARATH RecName: Full=Acyl-coenzyme A oxidase 3, peroxisomal; Short=AOX 3; Short=Acyl-CoA oxidase 3; AltName: Full=Medium-chain acyl-CoA oxidase; Short=AtCX3; Flags: Precursor gi|8515709|gb|AAF76137.1|AF253474_1 acyl-CoA oxidase [Arabidopsis thaliana] gi|20466227|gb|AAM20431.1| acyl-CoA oxidase ACX3 [Arabidopsis thaliana] gi|30725500|gb|AAP37772.1| At1g06290 [Arabidopsis thaliana] gi|51970656|dbj|BAD44020.1| hypothetical protein [Arabidopsis thaliana] gi|332189851|gb|AEE27972.1| acyl-coenzyme A oxidase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224145287|ref|XP_002325591.1| predicted protein [Populus trichocarpa] gi|222862466|gb|EEE99972.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297843432|ref|XP_002889597.1| acyl-CoA oxidase ACX3 [Arabidopsis lyrata subsp. lyrata] gi|297335439|gb|EFH65856.1| acyl-CoA oxidase ACX3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356517450|ref|XP_003527400.1| PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|22329367|ref|NP_172120.2| acyl-CoA oxidase [Arabidopsis thaliana] gi|62286635|sp|Q9LMI7.1|ACO32_ARATH RecName: Full=Putative acyl-coenzyme A oxidase 3.2, peroxisomal; Flags: Precursor gi|8927669|gb|AAF82160.1|AC068143_2 Contains similarity to an acyl-CoA oxidase (ASX2) mRNA from Arabidopsis thaliana gb|AF057043 and contains an acyl-CoA oxidase PF|01756 domain [Arabidopsis thaliana] gi|332189852|gb|AEE27973.1| acyl-CoA oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2038540 675 ACX3 "acyl-CoA oxidase 3" [Ara 0.989 0.699 0.76 3.5e-201
TAIR|locus:2202275 675 ACX6 "acyl-CoA oxidase 6" [Ara 0.983 0.694 0.737 9e-196
DICTYBASE|DDB_G0288735 652 DDB_G0288735 "putative acyl-Co 0.943 0.690 0.425 4.8e-94
DICTYBASE|DDB_G0270990 692 DDB_G0270990 "putative acyl-Co 0.939 0.647 0.391 1.3e-84
DICTYBASE|DDB_G0277477 638 DDB_G0277477 "acyl-CoA oxidase 0.932 0.697 0.395 3.9e-83
DICTYBASE|DDB_G0276065 628 DDB_G0276065 "acyl-CoA oxidase 0.696 0.528 0.472 2.3e-78
TAIR|locus:2171825 692 ACX2 "acyl-CoA oxidase 2" [Ara 0.708 0.488 0.468 3.1e-76
DICTYBASE|DDB_G0276245 629 DDB_G0276245 "acyl-CoA oxidase 0.928 0.704 0.387 5e-76
DICTYBASE|DDB_G0286669 667 DDB_G0286669 "acyl-CoA oxidase 0.844 0.604 0.413 7.5e-73
ZFIN|ZDB-GENE-040426-2163 692 acox3 "acyl-Coenzyme A oxidase 0.870 0.599 0.378 1.6e-72
TAIR|locus:2038540 ACX3 "acyl-CoA oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1947 (690.4 bits), Expect = 3.5e-201, P = 3.5e-201
 Identities = 361/475 (76%), Positives = 409/475 (86%)

Query:     2 DRAIHRTIIIKNHLLQ---PNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQ 58
             +RA+ R  ++ NH+LQ   P+S+  L+   CL YSPPELNE Y FD+KEMRKLLDGHN+ 
Sbjct:     4 NRALRRAHVLANHILQSNPPSSNPSLSRELCLQYSPPELNESYGFDVKEMRKLLDGHNVV 63

Query:    59 ERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTX 118
             +RDW++ LM+QS LFN ++RG K++V+PDYNQTMEQQRE+TMKRI YLLE  VF+GWLT 
Sbjct:    64 DRDWIYGLMMQSNLFNRKERGGKIFVSPDYNQTMEQQREITMKRIWYLLENGVFKGWLTE 123

Query:   119 XXXXXXXXXXXXXXVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVL 178
                           V GI+DHS++IK+GVHFFLWG A++FFGT+RHHEKWL++TE+YVV 
Sbjct:   124 TGPEAELRKLALLEVCGIYDHSVSIKVGVHFFLWGNAVKFFGTKRHHEKWLKNTEDYVVK 183

Query:   179 GCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQL 238
             GCFAMTELGHGSNVRGIETVTTYD  T EF+INTPCESAQKYWIGGAANHATHTIVFSQL
Sbjct:   184 GCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQL 243

Query:   239 EINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLN 298
              ING NQGVHAFI QIRD  G+ICPNIRIADCGHKIGLNGVDNGRIWFDN+RIPRENLLN
Sbjct:   244 HINGTNQGVHAFIAQIRDQDGSICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLN 303

Query:   299 SVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRA 358
             +VADVS DG+Y+SSIKDPDQRF AFMAPLTSGRV IA S++Y AK+GL+IAIRYSLSRRA
Sbjct:   304 AVADVSSDGKYVSSIKDPDQRFGAFMAPLTSGRVTIASSAIYSAKVGLSIAIRYSLSRRA 363

Query:   359 FSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSA 418
             FS+T NGPEVLLLDYPSHQRRLLPLLAK+YA S AAN LKM+YV RTP++NK IHVVSS 
Sbjct:   364 FSVTANGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANELKMIYVKRTPETNKAIHVVSSG 423

Query:   419 FKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
             FKA+LTWHNM TLQECREA GGQG+KTEN VG LKGEFDVQ TFEGDNNVLMQQV
Sbjct:   424 FKAVLTWHNMHTLQECREAVGGQGVKTENLVGQLKGEFDVQTTFEGDNNVLMQQV 478
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IEA;ISS;TAS
GO:0005777 "peroxisome" evidence=IEA;ISS
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISS;TAS
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0051791 "medium-chain fatty acid metabolic process" evidence=TAS
TAIR|locus:2202275 ACX6 "acyl-CoA oxidase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288735 DDB_G0288735 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270990 DDB_G0270990 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277477 DDB_G0277477 "acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276065 DDB_G0276065 "acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2171825 ACX2 "acyl-CoA oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276245 DDB_G0276245 "acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286669 DDB_G0286669 "acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2163 acox3 "acyl-Coenzyme A oxidase 3, pristanoyl" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CZ23ACOX3_ARATH1, ., 3, ., 3, ., 60.78520.98950.6992yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3LOW CONFIDENCE prediction!
3rd Layer1.3.3.60.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 0.0
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 1e-149
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 1e-117
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 1e-70
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 5e-61
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 6e-32
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 1e-31
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 4e-21
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 2e-17
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 2e-14
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 1e-11
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 4e-09
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 4e-09
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 9e-09
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 1e-08
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 4e-07
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 5e-07
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 5e-06
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 7e-06
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 7e-04
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 9e-04
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 0.001
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information 
 Score =  989 bits (2559), Expect = 0.0
 Identities = 384/474 (81%), Positives = 423/474 (89%), Gaps = 2/474 (0%)

Query: 2   DRAIHRTIIIKNHLLQ--PNSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQE 59
             A  R  ++ NHL Q  P+ +  LT + CL YSPPELNE Y FD+KEMRKLLDGHNL++
Sbjct: 8   SAAARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLED 67

Query: 60  RDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAK 119
           RDWLF LM+QS LFN ++RG +V+V+PDYNQTMEQQRE+TMKRI YLLER VF GWLT  
Sbjct: 68  RDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET 127

Query: 120 GAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLG 179
           G EAELRKLALLEV GI+DHSLAIK+GVHFFLWGGAI+F GT+RHH+KWL+DTE+YVV G
Sbjct: 128 GPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKG 187

Query: 180 CFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLE 239
           CFAMTELGHGSNVRGIETVTTYD  T EF+INTPCESAQKYWIGGAANHATHTIVFSQL 
Sbjct: 188 CFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLH 247

Query: 240 INGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNS 299
           INGKN+GVHAFI QIRD  GNICPNIRIADCGHKIGLNGVDNGRIWFDN+RIPRENLLNS
Sbjct: 248 INGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNS 307

Query: 300 VADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359
           VADVSPDG+Y+S+IKDPDQRF AF+APLTSGRV IA S++Y +K+GLAIAIRYSLSRRAF
Sbjct: 308 VADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAF 367

Query: 360 SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAF 419
           S+TPNGPEVLLLDYPSHQRRLLPLLAK+YA S AAN LKM+YV RTP+SNK IHVVSS F
Sbjct: 368 SVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESNKAIHVVSSGF 427

Query: 420 KAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
           KA+LTWHNMRTLQECREACGGQGLKTENRVG LK E+DVQ TFEGDNNVLMQQV
Sbjct: 428 KAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQV 481

Length = 680
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
PLN02312 680 acyl-CoA oxidase 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.9
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.9
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.58
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.58
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.47
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 98.83
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 98.82
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 98.33
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 97.47
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 92.25
PTZ00457520 acyl-CoA dehydrogenase; Provisional 90.38
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 86.43
>PLN02312 acyl-CoA oxidase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-86  Score=708.31  Aligned_cols=473  Identities=81%  Similarity=1.309  Sum_probs=436.2

Q ss_pred             HhhHHHHHHcccCCC--CCcccccccccccCCCCCCCcCCCCCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCc
Q 011806            4 AIHRTIIIKNHLLQP--NSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEK   81 (477)
Q Consensus         4 ~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (477)
                      ++||+.+|++||.++  +....+..++|..+.+|+....++||+++|+.+|++++.++|++++++++++|.|..+.++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p~f~~~~~~~~   89 (680)
T PLN02312         10 AARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSDLFNSKRRGGR   89 (680)
T ss_pred             HHHHHHHHHHhccCCCCCCcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCccccccccccc
Confidence            449999999999874  344568889999999999888899999999999999888999999999999999987644443


Q ss_pred             cccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCC
Q 011806           82 VYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGT  161 (477)
Q Consensus        82 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt  161 (477)
                      +...|.+..+.++.++++.+.++++.+.|++++.+|+++.+++...+.++|++++.|++++..+++|+++++.+|..+||
T Consensus        90 ~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GT  169 (680)
T PLN02312         90 VFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGT  169 (680)
T ss_pred             cccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCC
Confidence            44567777899999999999999999999999999987545677788999999999999888899998899999999999


Q ss_pred             HHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeC
Q 011806          162 QRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN  241 (477)
Q Consensus       162 ~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~  241 (477)
                      ++|+++|||++.+|++++||++|||+||||+.+++|+|++|+++|+|+|||||++|+|+||+|++.+|++++|+||+..+
T Consensus       170 eeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~  249 (680)
T PLN02312        170 KRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHIN  249 (680)
T ss_pred             HHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCC
Confidence            99999999999999999999999999999999999999999878999999999999999999994349999999999877


Q ss_pred             CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHH
Q 011806          242 GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFA  321 (477)
Q Consensus       242 ~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~  321 (477)
                      ++++|+++|+||++|.++.++|||++.++++|+|+++++++.|.|+||+||++++|+++++|+++|.|.+++.+++.||.
T Consensus       250 ~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~  329 (680)
T PLN02312        250 GKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFG  329 (680)
T ss_pred             CCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHH
Confidence            77789999999988777788999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011806          322 AFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMY  401 (477)
Q Consensus       322 ~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~  401 (477)
                      .++..+..+|+.+++.++|++++|+++|++|++.|+|||.+++++|.||++||.+|++|++|++.+++++....++.+.+
T Consensus       330 ~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~  409 (680)
T PLN02312        330 AFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIY  409 (680)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988888899999999999999999999999999999888888


Q ss_pred             HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806          402 VNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS  476 (477)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~  476 (477)
                      +....+..++.+..++++|++++|.+.+++++|+|+|||+||+.++++++++||+++..|+||+|+|++++|||+
T Consensus       410 ~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~  484 (680)
T PLN02312        410 VKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKA  484 (680)
T ss_pred             hcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence            764433446788999999999999999999999999999999999999999999999999999999999999973

>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 3e-57
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 3e-55
1is2_A 661 Crystal Structure Of Peroxisomal Acyl-coa Oxidase-i 6e-54
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 4e-16
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 5e-13
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 1e-12
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 1e-10
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 1e-10
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-10
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 2e-10
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 3e-08
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 3e-08
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 4e-08
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 7e-08
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 9e-08
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 1e-07
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 2e-07
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 3e-07
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 3e-07
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 3e-07
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 6e-07
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 2e-06
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 3e-06
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 3e-06
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 7e-06
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 1e-05
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-05
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 1e-05
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 2e-05
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 3e-05
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 5e-05
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 6e-05
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 15/340 (4%)
Query: 145 IGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204
           + +H+ ++  AI+  GT+   +KWL       ++GC+A TELGHGSNV+G+ET  T D  
Sbjct: 99  VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPK 158
Query: 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAG-NICP 263
           T EF+I+TP ++A K+W GG    +TH +V+++L  NGK+ G+H FI Q+R     +  P
Sbjct: 159 TDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLP 218
Query: 264 NIRIADCGHKIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRF 320
           NI + D G K+G    N +DNG + FD+VRIPR+ +L  ++ V+ +G+Y+ S   P Q  
Sbjct: 219 NITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPS-DVPKQLV 277
Query: 321 AAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRL 380
              M  +    V  A +++ +A   + IA RYS  RR F     G E  ++DY + Q RL
Sbjct: 278 YGTMVYVRQTIVADASNALSRA---VCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 334
Query: 381 LPLLAKSYAASCAANYLKMMYVNRTPQSNKT-------IHVVSSAFKAILTWHNMRTLQE 433
            PLLA +YA      +LK +Y + T +   +        H  ++  K++ T      ++E
Sbjct: 335 FPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEE 394
Query: 434 CREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQV 473
           CR+ CGG G    + +  L   +    T+EGDN VL  QV
Sbjct: 395 CRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQV 434
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From Rat Liver Length = 661 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 1e-164
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 1e-158
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 2e-26
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 4e-26
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 4e-26
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 4e-26
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 4e-25
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 2e-24
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 2e-22
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 2e-22
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-21
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 2e-21
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-20
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 2e-20
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 6e-20
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 7e-20
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-19
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-19
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 1e-19
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 5e-19
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 5e-19
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 9e-19
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 1e-18
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-18
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 2e-18
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 7e-18
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-17
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-17
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 1e-17
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 2e-17
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 4e-16
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 3e-08
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 1e-05
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-04
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
 Score =  478 bits (1232), Expect = e-164
 Identities = 126/442 (28%), Positives = 203/442 (45%), Gaps = 33/442 (7%)

Query: 42  DFDLKEMRKLLDG--HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMT 99
            F+ + +  +LDG   N + R  + NL++    F                 T  Q+ E+ 
Sbjct: 13  TFNPELITHILDGSPENTRRRREIENLILNDPDFQHE---------DYNFLTRSQRYEVA 63

Query: 100 MKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFF 159
           +K+ + ++++    G    +          ++             + +H  ++   +   
Sbjct: 64  VKKSATMVKKMREYGISDPE---------EIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQ 114

Query: 160 GTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQK 219
            T    E++     N  + G +A TE+GHG+++RG+ET  TYD  T EFI+N+P  ++ K
Sbjct: 115 ATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIK 174

Query: 220 YWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAA-GNICPNIRIADCGHKIGLNG 278
           +W GG    + H IV +QL   G+  G+HAF+  IR+       P I + D G K G   
Sbjct: 175 WWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEE 234

Query: 279 VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSS 338
           +DNG +  DN RIPREN+L   A V PDG Y+  + +           +   R  + G++
Sbjct: 235 MDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-----LTYGTMVFVRSFLVGNA 289

Query: 339 VYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLK 398
                    IAIRYS  RR   I  + PE  +LD+ + Q +L PLLA +YA      Y+K
Sbjct: 290 AQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMK 349

Query: 399 MMYVNRTPQSNKT-------IHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGH 451
             Y+       +        +H +++  KA  TW     ++ECR ACGG G    + + +
Sbjct: 350 ETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPN 409

Query: 452 LKGEFDVQLTFEGDNNVLMQQV 473
           +   F    TFEG+N V+M Q 
Sbjct: 410 IYVTFTPACTFEGENTVMMLQT 431
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
3djl_A 541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 99.97
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.93
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 92.14
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 81.84
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
Probab=100.00  E-value=6.8e-67  Score=533.44  Aligned_cols=378  Identities=18%  Similarity=0.232  Sum_probs=338.7

Q ss_pred             CCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch
Q 011806           43 FDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE  122 (477)
Q Consensus        43 ~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg  122 (477)
                      .++..|++.+++++.++++.+++|+++             .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++||
T Consensus        10 ~~p~~m~~~~~~e~~~l~~~~r~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG   75 (393)
T 3pfd_A           10 GNPSFELFQLPEEHIALREAIRALAEK-------------EIAPYA-AEVDEKARFPEEALAALNSSGFSAIHVPEEYGG   75 (393)
T ss_dssp             ------------CHHHHHHHHHHHHHH-------------HTGGGH-HHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTC
T ss_pred             CCCcccCCCCCHHHHHHHHHHHHHHHH-------------hCchHH-HHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCC
Confidence            466779999999999999999999988             355544 357777889999999999999999999999987


Q ss_pred             ---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEE
Q 011806          123 ---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT  199 (477)
Q Consensus       123 ---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A  199 (477)
                         ++.+.+.++|++++.|+++++.+..|. ++...|..+|+++|+++|||++.+|++++|+++|||++|||+..++|+|
T Consensus        76 ~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A  154 (393)
T 3pfd_A           76 QGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRA  154 (393)
T ss_dssp             CCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEE
T ss_pred             CCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEE
Confidence               889999999999999999998777774 6667789999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcc
Q 011806          200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGV  279 (477)
Q Consensus       200 ~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~  279 (477)
                      ++++  |||+||     |+|.||||+.. |||++|+|+++++.+..++++|+||.+      .|||++.++|+++|++++
T Consensus       155 ~~~~--~g~~ln-----G~K~~~s~~~~-Ad~~~v~a~~~~~~~~~g~~~flV~~~------~pGv~v~~~~~~~G~~~~  220 (393)
T 3pfd_A          155 VADG--DDWILN-----GSKCWITNGGK-STWYTVMAVTDPDKGANGISAFMVHKD------DEGFTVGPKERKLGIKGS  220 (393)
T ss_dssp             EEET--TEEEEE-----EEEEEEETTTT-CSEEEEEEESCGGGGGGGEEEEEEETT------STTEEEEEECCBSSCTTS
T ss_pred             EEcC--CEEEEe-----eEEEEecCCcc-cCEEEEEEEeCCCCCCCceEEEEEECC------CCCeEecCCCCcccCCCC
Confidence            9996  899999     99999999997 999999999976655678999999976      699999999999999999


Q ss_pred             cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011806          280 DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF  359 (477)
Q Consensus       280 ~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf  359 (477)
                      ++++|.||||+||++++|+.                ++.++...+..+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus       221 ~~~~v~fddv~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~f  284 (393)
T 3pfd_A          221 PTTELYFENCRIPGDRIIGE----------------PGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQF  284 (393)
T ss_dssp             CEEEEEEEEEEEEGGGEESS----------------TTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred             CceEEEEccEEEcHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Confidence            99999999999999999996                67899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011806          360 SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACG  439 (477)
Q Consensus       360 g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G  439 (477)
                      |+|       |+++|.+|++|++|.+.+++++++++++++.++..    ..+....++++|+++++.+.++++.|+|+||
T Consensus       285 g~~-------i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~----~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~G  353 (393)
T 3pfd_A          285 GRP-------VSDNQGVQFMLADMAMKIEAARLMVYSAAARAERG----EGDLGFISAASKCFASDVAMEVTTDAVQLFG  353 (393)
T ss_dssp             TEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             Ccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998       99999999999999999999999999999999873    2225667899999999999999999999999


Q ss_pred             cccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806          440 GQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS  476 (477)
Q Consensus       440 g~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~  476 (477)
                      |.||+.+++++|+|||+++..+++|++++++..|+|.
T Consensus       354 g~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~  390 (393)
T 3pfd_A          354 GYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRA  390 (393)
T ss_dssp             GGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             hhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999874
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 1e-51
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 2e-51
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 9e-25
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 8e-22
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 4e-21
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 2e-16
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 2e-15
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 2e-14
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 5e-14
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 7e-14
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 4e-13
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 2e-11
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 7e-11
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 1e-09
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 2e-06
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 0.002
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  173 bits (440), Expect = 1e-51
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 21/270 (7%)

Query: 43  FDLKEMRKLLDG--HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTM 100
           F+ + +  +LDG   N + R  + NL++    F                 T  Q+ E+ +
Sbjct: 14  FNPELITHILDGSPENTRRRREIENLILNDPDFQHE---------DYNFLTRSQRYEVAV 64

Query: 101 KRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFG 160
           K+ + ++++    G    +          ++             + +H  ++   +    
Sbjct: 65  KKSATMVKKMREYGISDPE---------EIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQA 115

Query: 161 TQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKY 220
           T    E++     N  + G +A TE+GHG+++RG+ET  TYD  T EFI+N+P  ++ K+
Sbjct: 116 TAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKW 175

Query: 221 WIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAG-NICPNIRIADCGHKIGLNGV 279
           W GG    + H IV +QL   G+  G+HAF+  IR+       P I + D G K G   +
Sbjct: 176 WPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEM 235

Query: 280 DNGRIWFDNVRIPRENLLNSVADVSPDGQY 309
           DNG +  DN RIPREN+L   A V PDG Y
Sbjct: 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTY 265
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.95
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.95
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.95
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.95
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.95
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.94
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.94
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.94
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.94
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.94
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.93
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.79
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 91.04
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.4e-43  Score=332.76  Aligned_cols=248  Identities=33%  Similarity=0.623  Sum_probs=204.1

Q ss_pred             cCCCCCHHHHhhhcCC--CcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHH----HHHHHHHHcCcc
Q 011806           39 EVYDFDLKEMRKLLDG--HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTM----KRISYLLERNVF  112 (477)
Q Consensus        39 ~~~~~~~~~m~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~l~~~Gl~  112 (477)
                      ..++||+++|+.+|++  ++.++|++++++++++|.|.+.         +.+..+.++......    ..++.+.+.|+.
T Consensus        11 ~~a~Fd~~el~~~l~g~ee~~~~r~~v~~~~~~dp~f~~~---------~~~~~sr~e~~~~~~~~~~~~~~~~~~~g~~   81 (271)
T d1w07a3          11 NKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKS---------NRARLSRKELFKSTLRKCAHAFKRIIELRLN   81 (271)
T ss_dssp             TTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCT---------TTTSSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCcccCCC---------CcCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            5678999999999986  4558899999999999998754         222344444333332    234444444332


Q ss_pred             ccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCC
Q 011806          113 EGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNV  192 (477)
Q Consensus       113 ~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~  192 (477)
                                 ......+...+     ..+..+++|+++++.+|..+||++||++|||++.+|++++|||+|||++|||+
T Consensus        82 -----------~~~~~~~~~~~-----~~~~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~  145 (271)
T d1w07a3          82 -----------EEEAGRLRHFI-----DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNV  145 (271)
T ss_dssp             -----------HHHHHHHHHHH-----CCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCG
T ss_pred             -----------hhhhHHHHHHh-----ccchHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCc
Confidence                       11222222222     22345778989999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCC-CCCCCCCeEEccCC
Q 011806          193 RGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA-AGNICPNIRIADCG  271 (477)
Q Consensus       193 ~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~-~~~~~pGv~i~~~~  271 (477)
                      .+++|+|++|+++++|+||+|+..|+|+||+|++.+|++++|+|++..+++++|+++|+||+++. ++.++|||++.+++
T Consensus       146 ~~l~T~A~~d~~gd~~vlng~k~~~~K~wi~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~  225 (271)
T d1w07a3         146 QGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIG  225 (271)
T ss_dssp             GGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECC
T ss_pred             ccccceeeecCCCceeeecccccceeeeccCCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccc
Confidence            99999999998889999999999999999999665699999999999988888999999999874 56789999999999


Q ss_pred             Cccc---cCcccceeEEecceecCcccccCCCCCcCCCCcccc
Q 011806          272 HKIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLS  311 (477)
Q Consensus       272 ~~~G---l~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~  311 (477)
                      +|+|   +++++++.|.|+||+||++++||++++|+++|.|.+
T Consensus       226 ~k~G~~~~~~~~~~~i~Fd~VrVP~~~lLg~~g~v~~~G~~~~  268 (271)
T d1w07a3         226 TKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVP  268 (271)
T ss_dssp             CBSSSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEE
T ss_pred             cccCccccCCCceEEEEEeeEEECHHHcCCCCCcCCCCceEec
Confidence            9998   689999999999999999999999999999999954
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure