Citrus Sinensis ID: 011812

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHccHHHEEEEEEEHcccHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccHccccccccccccccccccccccccccHHcccccccccHcccHHccccccccccHHHHHHHHHHccccccccccccccHccccccEEEEEccccEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MENADVFLGLHDFLermrqpsaaDFVKSIKSFIVSFsnnapdperdsAAVQSFLANMEAAFrahplwagcseeeLDSAGEGLEKYVMTKLFTRVfasipddvktdEQLSEKIALVQQfvrpenldikASFQNETSWLLAQKELQKInmykaprdKLVCILNCCKVINNLLLNASIalnenppgadeflpVLIYVTIkanppqlhsnLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSadmdglsnqndesegQISVEQLIQSKhqgvnstkekehltpvrssesksvkkvtfakdqepitkvpslselenKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSkglgsaasslpssvlpsqVQLQVEtmkapeehkrvelndesekdtsetndssnqvlnsneekvesqlpedeekverggkndetsk
Flexible Loop (DISEMBL)
MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKhqgvnstkekehltpvrssesksvkkvtfakdqepitkvpslseleNKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETmkapeehkrvelndesekdtsetndssnqvlnsneekvesqlpedeekverggkndetsk
Low Complexity Region (SEG)
MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVinnlllnasialnENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEHLTPvrssesksvkkvTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVClskglgsaasslpssvlpsqvqlQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK
Disordered region (IsUnstruct)
*****VFLGLHDFLERMRQPSAADFVKSIKSFIVSF**************QSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID***************************************************************************************************************SQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGL**********************************************************************************
Disordered Region (DISOPRED)
****DVFLGLHDFLERMRQPSAADFVKSIKSFI*****************QSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASI****NPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDA*************************************************************************************************************************************DLLNNYKQLVFKYV****************************************************************************************
Disordered Region (DISEMBL)
MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALS***********SAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSK****************************FAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG*************QVQLQVETMKAPE*******************************************************
Disordered Region (DISPRO)
**NADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS*******PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQAL***************************************************************QEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGL**********************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNDESEGQISVEQLIQSKHQGVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q9LT31	520	Vacuolar protein sorting-	yes	no	0.941	0.863	0.648	1e-167
O74396	572	Vacuolar protein sorting-	no	no	0.517	0.431	0.373	3e-44
A5D794	1413	GTPase-activating protein	yes	no	0.438	0.147	0.378	4e-29
Q14C86	1478	GTPase-activating protein	yes	no	0.438	0.141	0.378	4e-29
Q6PAR5	1458	GTPase-activating protein	yes	no	0.438	0.143	0.374	1e-28
A2RV61	1452	GTPase-activating protein	N/A	no	0.400	0.131	0.373	2e-28
P54787	451	Vacuolar protein sorting-	yes	no	0.515	0.545	0.317	1e-27
O18973	492	Rab5 GDP/GTP exchange fac	no	no	0.429	0.416	0.357	3e-27
Q9UJ41	708	Rab5 GDP/GTP exchange fac	no	no	0.366	0.247	0.388	5e-27
Q9JM13	491	Rab5 GDP/GTP exchange fac	no	no	0.429	0.417	0.353	1e-26

>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1

 Score =  588 bits (1516), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/455 (64%), Positives = 347/455 (76%), Gaps = 6/455 (1%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 1   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct: 61  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA NEN
Sbjct: 121 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
            PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 181 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA+++S++E+EFE+NMESA+A +SGL    D  + Q          ++    K Q +N  
Sbjct: 241 DAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQSLNPK 296

Query: 301 KEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
           +E        S       ++     + P+ K  S+S+LENKGAT LLK+ + S+VFQEYP
Sbjct: 297 RENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVFQEYP 355

Query: 361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKA 420
           Y+FA  GDL I DVE LLN+YKQLVFKYVCL+KGLG   S  PSS  P Q      T K 
Sbjct: 356 YIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSS-PLQASSGFNTSKE 414

Query: 421 PEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKV 455
            E+H+R   + +  K+T  + D   + L+   E V
Sbjct: 415 SEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDV 449

Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.
Arabidopsis thaliana (taxid: 3702)

>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps901 PE=1 SV=3

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 147/265 (55%), Gaps = 18/265 (6%)

Query: 7   FLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPL 66
               H FLE++R  SA    K +KSF+  F+            ++ FL  +      +  
Sbjct: 112 IFDFHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEP 171

Query: 67  WAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSEKIAL 114
           WA  S+ E+D+A EG+EK V+ +L+T +F+       IP      DDV+ D  LSEK+ L
Sbjct: 172 WASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMEL 231

Query: 115 VQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS 174
            Q ++  ENLDIK    +   + LA  EL++IN Y APRDK++C+LNCCKVI + L N  
Sbjct: 232 FQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVV 290

Query: 175 IALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAE 234
                    AD F+P+LI+V ++A P  L SN+ YIQR+R   +L GE  Y+ + ++ A 
Sbjct: 291 -----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAM 345

Query: 235 SFISNIDAQALSMEESEFERNMESA 259
           SFI  +D  +L++ E EF   +E +
Sbjct: 346 SFIETLDCSSLTITEEEFNAQIEKS 370

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 10/219 (4%)

Query: 27   KSIKSFIVSFSN-NAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKY 85
            K I+ FI  F    A D +  +A V+ FL  +  A     +W   SEE+L  A   +E+ 
Sbjct: 1198 KKIREFIQDFQKLTAADDK--TAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERS 1255

Query: 86   VMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKE 142
            VM ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E
Sbjct: 1256 VMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSE 1315

Query: 143  LQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQ 202
            ++ I+ YK PRDK+ CIL  C  I NLL   S+A  ++ PGAD+F+PVL++V IKANPP 
Sbjct: 1316 IRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPC 1372

Query: 203  LHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
            L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1373 LLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1410

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Bos taurus (taxid: 9913)

>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 10/219 (4%)

Query: 27   KSIKSFIVSFSN-NAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKY 85
            K I+ FI  F    A D +  +A V+ FL  +  A     +W   SEE+L  A   +E+ 
Sbjct: 1263 KKIREFIQDFQKLTAADDK--TAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERS 1320

Query: 86   VMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKE 142
            VM ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E
Sbjct: 1321 VMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSE 1380

Query: 143  LQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQ 202
            ++ I+ YK PRDK+ CIL  C  I NLL   S+A  ++ PGAD+F+PVL++V IKANPP 
Sbjct: 1381 IRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPC 1437

Query: 203  LHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
            L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1438 LLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1475

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Homo sapiens (taxid: 9606)

>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 10/219 (4%)

Query: 27   KSIKSFIVSFSN-NAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKY 85
            K I+ FI  F    A D +  +A V+ FL  +        +W   SEE+L  A   +E+ 
Sbjct: 1243 KKIREFIQDFQKLTAADDK--TAQVEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERS 1300

Query: 86   VMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKE 142
            VM ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E
Sbjct: 1301 VMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSE 1360

Query: 143  LQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQ 202
            ++ I+ YK PRDK+ CIL  C  I NLL   S+A  ++ PGAD+F+PVL++V IKANPP 
Sbjct: 1361 IRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPC 1417

Query: 203  LHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
            L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1418 LLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1455

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Mus musculus (taxid: 10090)

>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 7/198 (3%)

Query: 47   SAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTD 105
            +A V+ FL ++  A     +W   SEE+L  A   +E+ +M ++F   F    D D+  D
Sbjct: 1256 TAQVEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRD 1315

Query: 106  EQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCC 163
            + L E I  + + V   +  L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C
Sbjct: 1316 QVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMC 1375

Query: 164  KVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEA 223
              I NLL   S+A   + PGAD+F+PVL++V IKANP  L S + YI  +   +RL+GE 
Sbjct: 1376 STIMNLL---SLANEYSVPGADDFVPVLVFVLIKANPTYLLSTVQYISSF-YSNRLIGEE 1431

Query: 224  AYFFTNMLSAESFISNID 241
            +Y++    +A  FI  ID
Sbjct: 1432 SYWWMQFTAAVEFIKTID 1449

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking.

Xenopus laevis (taxid: 8355)

>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1 SV=2

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 28/274 (10%)

Query: 7   FLGLHDFLERMRQPSAADFVKSIKSFIVSF--SNNAPDPERDSAAVQSFLANMEAAFRAH 64
           F     F+++++ P A   VK  KSF+ +F           +   +  F   +   F  +
Sbjct: 60  FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLY 119

Query: 65  PLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS---------IPD----DVKTDEQLSEK 111
             +      ++ +A EG+EK +M KL++R F+          + D    D+  D+ L EK
Sbjct: 120 EPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEK 179

Query: 112 IALVQQFVRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINN 168
           I   + F+ P  LDI  +  N        LA KEL KIN +K+PRDK+VC+LN  KVI  
Sbjct: 180 IRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFG 238

Query: 169 LLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFT 228
           LL +  +  N    GAD F+PVLIY  +K     L SN+ YI+R+R    + GE  Y+ +
Sbjct: 239 LLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLS 294

Query: 229 NMLSAESFISNIDAQALSMEESE-----FERNME 257
           ++ +A +FI N+  ++L++E+ E     ++RN +
Sbjct: 295 SLQAALNFIMNLTERSLTIEDHEDFEEAYQRNFK 328

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors. May bind a Rab GTPase such as VPS21.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1

 Score =  123 bits (309), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 13/218 (5%)

Query: 44  ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDV 102
           E  S   Q F  N+    +          E ++   + +EKY+MT+L+  VF     DD 
Sbjct: 177 EEQSECTQDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDE 233

Query: 103 KTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQKELQKINM--YKAPRDKLVCI 159
           K D  + ++I  +  +V P+ L +  + +  E S ++ +     I M   + PRDKL CI
Sbjct: 234 KKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACI 292

Query: 160 LNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL 219
             C K I N +    I  NE P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL
Sbjct: 293 TKCSKHIFNAI---KITKNE-PASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL 348

Query: 220 V-GEAAYFFTNMLSAESFISNIDAQALSMEESEFERNM 256
           + GE  Y+FTN+  A +FI  +DAQ+L++ + +F+R M
Sbjct: 349 MTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 386

Rab effector protein acting as linker between gamma-adaptin and RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Bos taurus (taxid: 9913)

>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2

 Score =  122 bits (307), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 18/193 (9%)

Query: 73  EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 126
           E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +     Q    P N DI
Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 478

Query: 127 KASFQNETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGA 184
                 E S ++ +     I M   + PRDKL CI  C K I N +    I  NE P  A
Sbjct: 479 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKNE-PASA 529

Query: 185 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQ 243
           D+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ
Sbjct: 530 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 589

Query: 244 ALSMEESEFERNM 256
           +L++ + +F+R M
Sbjct: 590 SLNLSQEDFDRYM 602

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Homo sapiens (taxid: 9606)

>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 13/218 (5%)

Query: 44  ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDV 102
           E  S   Q F  N+    +          E+++   + +EK++MT+L+  VF     DD 
Sbjct: 176 EEQSECTQDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDE 232

Query: 103 KTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQKELQKINM--YKAPRDKLVCI 159
           K D  + ++I  +  +V P+ L +  + +  E S ++ +     I M   + PRDKL CI
Sbjct: 233 KKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACI 291

Query: 160 LNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL 219
             C K I N +    I  NE P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL
Sbjct: 292 TRCSKHIFNAI---KITKNE-PASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL 347

Query: 220 V-GEAAYFFTNMLSAESFISNIDAQALSMEESEFERNM 256
           + GE  Y+FTN+  A +FI  +DAQ+L++ + +F+R M
Sbjct: 348 MTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 385

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A (By similarity). Can act as a ubiquitin ligase.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
255545562	477	Vacuolar protein sorting-associated prot	0.997	0.997	0.728	0.0
225459441	463	PREDICTED: vacuolar protein sorting-asso	0.943	0.971	0.700	0.0
356515841	467	PREDICTED: vacuolar protein sorting-asso	0.953	0.974	0.705	0.0
224082206	396	predicted protein [Populus trichocarpa]	0.828	0.997	0.775	0.0
356507682	465	PREDICTED: vacuolar protein sorting-asso	0.958	0.982	0.693	1e-179
449526840	474	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.981	0.987	0.665	1e-177
449442359	474	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.981	0.987	0.663	1e-175
357461699	478	Rab5 GDP/GTP exchange factor [Medicago t	0.941	0.939	0.639	1e-171
297830640	520	vacuolar sorting protein 9 domain-contai	0.876	0.803	0.691	1e-166
18402362	520	vacuolar sorting protein 9 domain-contai	0.941	0.863	0.648	1e-165

>gi|255545562|ref|XP_002513841.1| Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis] gi|223546927|gb|EEF48424.1| Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/478 (72%), Positives = 398/478 (83%), Gaps = 2/478 (0%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MENADVFLGLHDFLERMRQPSA+DFVKSIKSFIVSFSNNAPDPERDSA VQ FLANMEAA
Sbjct: 1   MENADVFLGLHDFLERMRQPSASDFVKSIKSFIVSFSNNAPDPERDSALVQEFLANMEAA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLWAGCS++EL+SAGEGLEKYVMTKLFTRVFAS+PDDVK DEQLSEK++L+QQF+R
Sbjct: 61  FRAHPLWAGCSDDELESAGEGLEKYVMTKLFTRVFASLPDDVKADEQLSEKMSLIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK  FQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA NEN
Sbjct: 121 PENLDIKPPFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPV+IYVT+KANPPQL+SNLLYIQRYR QSRLVGEAAYFFTNMLSA SFISNI
Sbjct: 181 PPGADEFLPVVIYVTLKANPPQLNSNLLYIQRYRSQSRLVGEAAYFFTNMLSAVSFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA +LSMEE+EFE+NMESA+ALLSGLS D D LSNQ+D+S       ++++S+ + V+S 
Sbjct: 241 DANSLSMEEAEFEKNMESARALLSGLSTDWDSLSNQSDQSARNNFKPEVMESQPRAVDSK 300

Query: 301 KEKEHLTPVRSSESKS-VKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEY 359
           K +E L   +SSE++S  K + +AKD+  +TKV SLS++EN+GA MLLKE+ AS VF+EY
Sbjct: 301 KARESLIGSKSSEARSGSKNLQYAKDESFMTKVSSLSDIENRGAVMLLKEDLASSVFREY 360

Query: 360 PYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMK 419
           PYLFA  GDLTI DVEDLL NYKQLVFKYVCLSKGLG    SL  S   +  Q   ET+K
Sbjct: 361 PYLFAHAGDLTIHDVEDLLYNYKQLVFKYVCLSKGLGGTTPSLRLSNSQTHFQHATETIK 420

Query: 420 APEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK 477
              E + VE NDES+K T++TN S    L S EE  ES+ P++E    +    +ETS+
Sbjct: 421 EHLETRSVEANDESQKQTAKTNSSGTFSLVS-EENFESKSPQEEAIALQEEGKEETSQ 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459441|ref|XP_002285827.1| PREDICTED: vacuolar protein sorting-associated protein 9A isoform 1 [Vitis vinifera]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/477 (70%), Positives = 378/477 (79%), Gaps = 27/477 (5%)

Query: 1   MENADVF------LGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFL 54
           MENAD F      L  HDFLERMRQPSAADFVK+IKSFIVSFSNNAPDPERDSAAVQ FL
Sbjct: 1   MENADPFASSTAPLTWHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAAVQEFL 60

Query: 55  ANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIAL 114
           ANME AFRAHPLWAGCSEEEL+SAGEGLEKYVMTKL+TRVFAS+PDD K DEQL EKI L
Sbjct: 61  ANMEMAFRAHPLWAGCSEEELESAGEGLEKYVMTKLYTRVFASVPDDSKLDEQLFEKIGL 120

Query: 115 VQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS 174
           VQQF+RPE LDIK +FQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS
Sbjct: 121 VQQFIRPEQLDIKTTFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS 180

Query: 175 IALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAE 234
           IA NE+PPGADEFLPVLIYVT+KANPPQLHSNLLYI RYRRQSR+V EAAYFFTNMLSAE
Sbjct: 181 IASNEDPPGADEFLPVLIYVTLKANPPQLHSNLLYILRYRRQSRMVAEAAYFFTNMLSAE 240

Query: 235 SFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKH 294
           SFISNI+A++LSM+E EFE NMESA+ALLSGLS+D+DG+               L + + 
Sbjct: 241 SFISNINAESLSMDEREFEMNMESARALLSGLSSDLDGV---------------LKEPQQ 285

Query: 295 QGVNSTKEKE-----HLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKE 349
           + + STKEK+      L+ + S  +   K    AKDQ  ITKVPS+S+LENKGA MLLKE
Sbjct: 286 KSLYSTKEKDPSIGSDLSLLSSEATSGAKLEPHAKDQL-ITKVPSISDLENKGAAMLLKE 344

Query: 350 EKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPS 409
           ++AS  F+EYPYL+A VGDLT++DVEDLLN+YKQLVFK+VCLSKGLG  A  LP S+  +
Sbjct: 345 DQASLAFREYPYLYANVGDLTVNDVEDLLNHYKQLVFKHVCLSKGLGVPAPPLPLSISQT 404

Query: 410 QVQLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKV 466
           Q Q   ETMK   + +  E+ D +  D   TND SNQV     E  ES+LP++E  V
Sbjct: 405 QAQKHAETMKDSADTRAAEVKDNTLNDIGSTNDVSNQVSLFEVETSESKLPQEEAVV 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515841|ref|XP_003526606.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Glycine max]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/465 (70%), Positives = 386/465 (83%), Gaps = 10/465 (2%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MENADVFLGLHDFLERMRQPSAA+FVK+IKSFIVSFSNNAPDP+RDSAAVQ+FLA MEA 
Sbjct: 1   MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSAAVQAFLAKMEAD 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLWAGCSEEEL+SAGEGLEKYVMTKLF RVFAS+PDDVK D+QLSEK+AL+QQF+R
Sbjct: 61  FRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK  FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCC+VI+NLLLNAS+A  EN
Sbjct: 121 PENLDIKPVFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVASREN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPVLIYVTIKANPPQLHSNLLYIQR+R QSRLV EAAY+FTNMLSAESFISNI
Sbjct: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMD--GLSNQNDESEGQISVEQLIQSKHQGVN 298
           DA+A+SMEE+EF+ NME A+A+LSG+SAD    G   QND   GQ    +   +KH+ +N
Sbjct: 241 DAKAISMEEAEFDGNMEFARAMLSGISADTQDPGSPYQND---GQHPRAE--PTKHKALN 295

Query: 299 STKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQE 358
              +    TP   ++S+S KKVTFA ++  ITKVPSLS+LENKGA+M+LKE+K ++VF E
Sbjct: 296 DNNDPALRTPSSVAKSES-KKVTFA-NESLITKVPSLSDLENKGASMILKEDKLNEVFGE 353

Query: 359 YPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETM 418
           +PYLFA VGDL + DVEDLLNNYKQLVFKYV LSKGLG + +SLP S   +  +   ET 
Sbjct: 354 FPYLFASVGDLMVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLPPSNSQNNSEDHAETT 413

Query: 419 KAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDE 463
               ++  ++ N +SE+    T+DSS++V    E+K+ES LP+D+
Sbjct: 414 IDSSDNGPLDDNSKSEESIDTTDDSSDKV-TLEEQKIESDLPKDD 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082206|ref|XP_002306602.1| predicted protein [Populus trichocarpa] gi|222856051|gb|EEE93598.1| predicted protein [Populus trichocarpa]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/397 (77%), Positives = 356/397 (89%), Gaps = 2/397 (0%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN+D+ LGLHDFLERMR PSAADFVKSIKSFIVSFSN+APDPERDSA VQ FLANME A
Sbjct: 1   MENSDISLGLHDFLERMRHPSAADFVKSIKSFIVSFSNHAPDPERDSALVQEFLANMETA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           F+AHPLWAGCSEEEL+SAGEGLEKYVMTKL +RVFAS+PDDV+ D+QLSEKI+L+QQF+R
Sbjct: 61  FKAHPLWAGCSEEELESAGEGLEKYVMTKLSSRVFASVPDDVEVDKQLSEKISLIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK +FQNETSWLLAQKELQK+N+Y+APRDKLVCILNCCKVINNLL NAS+A NEN
Sbjct: 121 PENLDIKPAFQNETSWLLAQKELQKVNLYRAPRDKLVCILNCCKVINNLLFNASMASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYR QSRLVGEAAYF TN+LSAESFISNI
Sbjct: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRCQSRLVGEAAYFLTNILSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA++LSMEESEFE+NME A+  L+GLS D++GLS Q+D++ G  S  +L++SKH+ ++S 
Sbjct: 241 DAKSLSMEESEFEKNMELARD-LTGLSTDLNGLSTQSDQNAGNNSRAELMESKHRALSSK 299

Query: 301 KEKEHLTPVRSSESKSVKK-VTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEY 359
           KE++     RSSE  S+ K + +AKD+ P+ K+ SLS++ENKGAT+LLKE+  SQV +EY
Sbjct: 300 KERDLSIGSRSSEVTSMSKDLQYAKDESPMEKISSLSDIENKGATLLLKEDLTSQVLREY 359

Query: 360 PYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG 396
           PYLFA VGDLTI+DVEDLLNNYKQLVFKYVCLSKGLG
Sbjct: 360 PYLFASVGDLTINDVEDLLNNYKQLVFKYVCLSKGLG 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507682|ref|XP_003522593.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Glycine max]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 328/473 (69%), Positives = 378/473 (79%), Gaps = 16/473 (3%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MENADVFLGLHDFLERMRQPSAA+FVK+IKSFIVSFSNNAPDP+RDSA VQ+FLA MEA 
Sbjct: 1   MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSATVQAFLAKMEAD 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           F AHPLWAGCSEEEL SAGEGLEKYVMTKLF RVFAS+PDDVK D+QLSEK+AL+QQF+R
Sbjct: 61  FSAHPLWAGCSEEELASAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCC+VI+NLLLNAS+A  EN
Sbjct: 121 PENLDIKPAFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVASREN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPVLIYVTIKANPPQLHSNLLYIQR+R QSRLV EAAY+FTNMLSAESFISNI
Sbjct: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMD--GLSNQNDESEGQISVEQLIQSKHQGVN 298
           DA+A+SM+E+EFE NME A+A+LSG+SAD    G   QN+    +        +KH+ + 
Sbjct: 241 DAKAISMDEAEFEGNMEFARAMLSGISADTQDPGSPYQNNGHHTRAE-----PTKHKALI 295

Query: 299 STKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQE 358
              +    TP    +S+S KKVTFA D+  ITKVPSLS+LENKGA+M+LKE+K + VF E
Sbjct: 296 DHNDPALRTPSSVVKSES-KKVTFA-DESLITKVPSLSDLENKGASMILKEDKLNAVFGE 353

Query: 359 YPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETM 418
           +PYLFA VGDLT+ DVEDLLNNYKQLVFKYV LSKGLG + +SLP    PS  Q   E  
Sbjct: 354 FPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLP----PSNSQDNSEGH 409

Query: 419 KAPEEHKRVELND--ESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERG 469
              +      L+D  +SE+    T DSS++V +  E K+ES LP+DE     G
Sbjct: 410 AEVDSSDGGPLDDNNKSEESIDTTEDSSDKV-SLEERKIESGLPKDEPVAPEG 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526840|ref|XP_004170421.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 9A-like [Cucumis sativus]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 321/482 (66%), Positives = 376/482 (78%), Gaps = 14/482 (2%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMRQPSA+DFVKSIKSFIVSFSNNAPDPERDSA+VQ F A ME A
Sbjct: 1   MENTDVFLGLHDFLERMRQPSASDFVKSIKSFIVSFSNNAPDPERDSASVQEFFAKMEGA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEEL+SAGEGLEKYVMTKLF+RV+AS+ DDVK DEQ+SEK+AL+QQF+R
Sbjct: 61  FRAHPLWSGCSEEELESAGEGLEKYVMTKLFSRVYASLADDVKIDEQISEKMALIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK +FQNETSWLLAQKEL KINM+KAPRDKLVC+L+CCKVI+NLL NASIA NEN
Sbjct: 121 PENLDIKPNFQNETSWLLAQKELLKINMHKAPRDKLVCLLSCCKVISNLLFNASIASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPVLIYV IKANPPQLHSNLLYIQRYR QSRL GEAAYFFTN+LSAESFISNI
Sbjct: 181 PPGADEFLPVLIYVIIKANPPQLHSNLLYIQRYRGQSRLTGEAAYFFTNVLSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA+ALSMEE EF +NMESA+ALLSGLS+D++ LSN+N+  EG     +L+++  Q     
Sbjct: 241 DAKALSMEEIEFXKNMESARALLSGLSSDVEALSNKNNLDEGVGHYSELVETSSQASVE- 299

Query: 301 KEKEHLTPVR--SSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKAS-QVFQ 357
                 +PVR   +E K   +   AKDQ  + KVPSLS+LENKGAT+LL ++    Q  +
Sbjct: 300 ------SPVRPKPTEGKPRTEAPHAKDQSAVMKVPSLSDLENKGATILLNDQTGGRQALR 353

Query: 358 EYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG--SAASSLPSSVLPSQVQLQV 415
           EYPYLF+QVGDLT  DVE+LL+ YKQLVFKYV LS+GL   +  SS   S + S  Q   
Sbjct: 354 EYPYLFSQVGDLTFKDVEELLSQYKQLVFKYVSLSRGLSLTTEFSSYSKSEMHS--QHHH 411

Query: 416 ETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDET 475
           E+ K PE+ + V  NDES  D     D  +      EE V S LP+D+ ++ +   N+E 
Sbjct: 412 ESFKEPEDVRDVTSNDESAGDRHRLIDGPDGTSLFGEENVGSGLPQDKVELPQREGNNEM 471

Query: 476 SK 477
           S+
Sbjct: 472 SQ 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442359|ref|XP_004138949.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 9A-like [Cucumis sativus]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 320/482 (66%), Positives = 375/482 (77%), Gaps = 14/482 (2%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMRQPSA+DFVKSIKSFIVSFSNNAPDPERDSA+VQ F A ME A
Sbjct: 1   MENTDVFLGLHDFLERMRQPSASDFVKSIKSFIVSFSNNAPDPERDSASVQEFFAKMEGA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEEL+SAGEGLEKYVMTKLF+RV+AS+ DDVK DEQ+SEK+AL+QQF+R
Sbjct: 61  FRAHPLWSGCSEEELESAGEGLEKYVMTKLFSRVYASLADDVKIDEQISEKMALIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK +FQNETSWLLAQKEL KINM+KAPRDKLVC+L+CCKVI+NLL NASIA NEN
Sbjct: 121 PENLDIKPNFQNETSWLLAQKELLKINMHKAPRDKLVCLLSCCKVISNLLFNASIASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPVLIYV IKANPPQLHSNLLYIQRYR QSRL GEAAYFFTN+LSAESFISNI
Sbjct: 181 PPGADEFLPVLIYVIIKANPPQLHSNLLYIQRYRGQSRLTGEAAYFFTNVLSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA+ALSMEE EFE+NMESA+ALLSGLS+D++ LSN+N+  EG     +L+++  Q     
Sbjct: 241 DAKALSMEEIEFEKNMESARALLSGLSSDVEALSNKNNLDEGVGHYSELVETSSQASVE- 299

Query: 301 KEKEHLTPVR--SSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKAS-QVFQ 357
                 +PVR   +E K   +   AKDQ  + KVPSLS+LENKGAT+LL ++    Q  +
Sbjct: 300 ------SPVRPKPTEGKPRTEAPHAKDQSAVMKVPSLSDLENKGATILLNDQTGGRQALR 353

Query: 358 EYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG--SAASSLPSSVLPSQVQLQV 415
           EY  LF+QVGDLT  DVE+LL+ YKQLVFKYV LS+GL   +  SS   S + S  Q   
Sbjct: 354 EYSQLFSQVGDLTFKDVEELLSQYKQLVFKYVSLSRGLSLTTEFSSYSKSEMHS--QHHH 411

Query: 416 ETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDET 475
           E+ K PE+ + V  NDES  D     D  +      EE V S LP+D+ ++ +   N+E 
Sbjct: 412 ESFKEPEDVRDVTSNDESAGDRHRLIDGPDGTSLFGEENVGSGLPQDKVELPQREGNNEM 471

Query: 476 SK 477
           S+
Sbjct: 472 SQ 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461699|ref|XP_003601131.1| Rab5 GDP/GTP exchange factor [Medicago truncatula] gi|355490179|gb|AES71382.1| Rab5 GDP/GTP exchange factor [Medicago truncatula]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 317/496 (63%), Positives = 376/496 (75%), Gaps = 47/496 (9%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MENAD   GLHDFLERMRQP+AADFVK+IKSFIVSFSN+ PDPERDS AVQ FLANMEAA
Sbjct: 1   MENADASSGLHDFLERMRQPAAADFVKAIKSFIVSFSNHGPDPERDSDAVQDFLANMEAA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           F+AHPLWAGCS++EL+SAGEGLEKYVMTKLF RVFAS+PDDVK DEQLSEK+AL+QQF+R
Sbjct: 61  FKAHPLWAGCSDDELESAGEGLEKYVMTKLFPRVFASVPDDVKLDEQLSEKMALIQQFIR 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDIK  FQNETSWLLAQKELQKINMYKAPRDKL CILNCCKVI NLLLNAS+A  +N
Sbjct: 121 PENLDIKPPFQNETSWLLAQKELQKINMYKAPRDKLTCILNCCKVIGNLLLNASLASKDN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
           PPGADEFLPVLIYVT+KANPPQLHSNLLYIQR+RRQSRLVGEA+Y+FTNMLSAESFISNI
Sbjct: 181 PPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA A+SM+E+EFERNME A+ALLSGLS D                  Q   S +Q  N  
Sbjct: 241 DANAISMDETEFERNMEFARALLSGLSVDT-----------------QDPNSPYQ--NHV 281

Query: 301 KEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
           +  ++  P   ++ +S KKVTFA +   I KVPSLS+LENKGA M++KE+K + VF+E+P
Sbjct: 282 QHDKNKAPSSDAKLES-KKVTFASESS-IAKVPSLSDLENKGACMIIKEDKLNDVFREFP 339

Query: 361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQL-QVETMK 419
           Y+FA VGDLT+SDVEDLL NYK+LV KYVCLSKGLG ++SS   S   +  Q   VET+ 
Sbjct: 340 YMFASVGDLTVSDVEDLLKNYKRLVSKYVCLSKGLGVSSSSHHPSNPQNNAQQDHVETLS 399

Query: 420 A-------------PEEHKRVELNDESEKDTSE-----TNDSSNQVLNSNEE-------K 454
                         P+ + +  +  E+  D+S+     +N+ S + L+++E+       K
Sbjct: 400 KGLASSSSSHHPSNPQNNAQGHVESETTIDSSDNGPVASNEKSEKSLDTSEDNSDPEEKK 459

Query: 455 VESQLPEDEEKVERGG 470
            +S LP+DE     GG
Sbjct: 460 SDSGLPQDEAAAPEGG 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830640|ref|XP_002883202.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329042|gb|EFH59461.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 293/424 (69%), Positives = 336/424 (79%), Gaps = 6/424 (1%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 1   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCATVQEFFSKMEAA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct: 61  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA NEN
Sbjct: 121 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
            PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 181 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA++LS++E+EFE+NMESA+A +SGL +     S Q          ++    K Q +N  
Sbjct: 241 DAKSLSLDEAEFEKNMESARARISGLGSQ----SYQTGHGTAPPPRDESTLQKTQSLNPK 296

Query: 301 KEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
           +E        S       ++     + P+ K  S+S+LENKGAT LLK+ + S+VFQEYP
Sbjct: 297 RENTLFQSKSSDSLSGTNEILNINSETPMKKAESISDLENKGAT-LLKDTEPSKVFQEYP 355

Query: 361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKA 420
           YLFA  GDL I DVEDLLNNYKQLVFKYVCL+KGLG A S  PSS  P Q     +T K 
Sbjct: 356 YLFASAGDLRIGDVEDLLNNYKQLVFKYVCLTKGLGDATSLAPSSS-PLQALSGFDTYKE 414

Query: 421 PEEH 424
            E+H
Sbjct: 415 SEDH 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402362|ref|NP_566645.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis thaliana] gi|75335448|sp|Q9LT31.1|VPS9A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 9A; Short=AtVSP9a gi|11994188|dbj|BAB01291.1| unnamed protein product [Arabidopsis thaliana] gi|15027907|gb|AAK76484.1| unknown protein [Arabidopsis thaliana] gi|19310677|gb|AAL85069.1| unknown protein [Arabidopsis thaliana] gi|332642763|gb|AEE76284.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis thaliana]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/455 (64%), Positives = 347/455 (76%), Gaps = 6/455 (1%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 1   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 60

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct: 61  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 120

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA NEN
Sbjct: 121 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 180

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
            PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 181 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 240

Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
           DA+++S++E+EFE+NMESA+A +SGL    D  + Q          ++    K Q +N  
Sbjct: 241 DAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQSLNPK 296

Query: 301 KEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
           +E        S       ++     + P+ K  S+S+LENKGAT LLK+ + S+VFQEYP
Sbjct: 297 RENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVFQEYP 355

Query: 361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKA 420
           Y+FA  GDL I DVE LLN+YKQLVFKYVCL+KGLG   S  PSS  P Q      T K 
Sbjct: 356 YIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSS-PLQASSGFNTSKE 414

Query: 421 PEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKV 455
            E+H+R   + +  K+T  + D   + L+   E V
Sbjct: 415 SEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDV 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2092211	520	VPS9A [Arabidopsis thaliana (t	0.945	0.867	0.592	3.2e-136
TAIR|locus:2184727	712	VPS9B "AT5G09320" [Arabidopsis	0.777	0.521	0.597	1.7e-114
DICTYBASE|DDB_G0285073	726	DDB_G0285073 "vacuolar sorting	0.610	0.400	0.340	9.7e-45
POMBASE|SPBC4F6.10	572	vps901 "guanyl-nucleotide exch	0.524	0.437	0.364	1.1e-42
ASPGD|ASPL0000018244	767	AN3678 [Emericella nidulans (t	0.335	0.208	0.427	5.4e-41
DICTYBASE|DDB_G0289495	1197	DDB_G0289495 "vacuolar sorting	0.559	0.223	0.314	3.8e-33
ZFIN|ZDB-GENE-040426-1486	502	rabgef1 "RAB guanine nucleotid	0.498	0.474	0.355	4.4e-30
UNIPROTKB|E1C0P2	491	RABGEF1 "Uncharacterized prote	0.494	0.480	0.318	2e-28
UNIPROTKB|F6Y7P9	492	RABGEF1 "Uncharacterized prote	0.494	0.479	0.306	1.8e-26
ZFIN|ZDB-GENE-040426-813	470	rabgef1l "RAB guanine nucleoti	0.528	0.536	0.327	4.1e-26

TAIR|locus:2092211 VPS9A [Arabidopsis thaliana (taxid:3702)]

 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 271/457 (59%), Positives = 321/457 (70%)

Query:     1 MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
             MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct:     1 MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 60

Query:    61 FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
             FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct:    61 FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 120

Query:   121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXEN 180
             PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV             EN
Sbjct:   121 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 180

Query:   181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
              PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct:   181 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 240

Query:   241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
             DA+++S++E+EFE+NMESA+A +SGL    D  + Q          ++    K Q +N  
Sbjct:   241 DAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQSLNPK 296

Query:   301 KEKEHLTPXXXXXXXXXXXXTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
             +E                       + P+ K  S+S+LENKGAT LLK+ + S+VFQEYP
Sbjct:   297 RENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVFQEYP 355

Query:   361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVCXXXXXXXXXXXXXXXXXXXXXXXQVETMKA 420
             Y+FA  GDL I DVE LLN+YKQLVFKYVC                          T K 
Sbjct:   356 YIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSSPLQASSG-FNTSKE 414

Query:   421 PEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVES 457
              E+H+R   + +  K+T  + D   + L+   E V +
Sbjct:   415 SEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDVNN 451

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0000919 "cell plate assembly" evidence=IMP

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0042546 "cell wall biogenesis" evidence=IMP

GO:0048528 "post-embryonic root development" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2184727 VPS9B "AT5G09320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
 Identities = 233/390 (59%), Positives = 278/390 (71%)

Query:     1 MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
             MEN DV  GLH+FL +   PSA DF+KSIKSFIVS  N APDPE+D  AVQ F   ME+A
Sbjct:     1 MENTDVVSGLHNFLSK---PSAKDFIKSIKSFIVSILNTAPDPEKDCDAVQDFFYKMESA 57

Query:    61 FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
             FRAHPLW+GCS++ELD+AG+GLEKYVMTKLF RVFAS  +DV +DE+L +KI+LVQQF+ 
Sbjct:    58 FRAHPLWSGCSDDELDNAGDGLEKYVMTKLFPRVFASNTEDVISDEKLFQKISLVQQFIS 117

Query:   121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXEN 180
             PENLDI+ +FQN+TSWLLAQKELQKINMY APRDKL+CIL CCKV             +N
Sbjct:   118 PENLDIQPTFQNQTSWLLAQKELQKINMYNAPRDKLMCILRCCKVINNLLLNASIASNQN 177

Query:   181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
              PGAD+FLPVLIYVTIKANPPQ HSNLLYIQRYRRQS+LVGEA Y FTN+LSAESFISNI
Sbjct:   178 EPGADQFLPVLIYVTIKANPPQFHSNLLYIQRYRRQSKLVGEAGYLFTNILSAESFISNI 237

Query:   241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
             DA++LSM+E++FE  M+SA A LSG  +     S Q D      +       +   +  T
Sbjct:   238 DAKSLSMDEADFETKMKSAHARLSGPGSQ----SYQTDHGAALPTAHNT--KRENMLLHT 291

Query:   301 KEKEHLTPXXXXXXXXXXXXTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
             K  +  +             T  K  +PIT + +        AT+L    +A+++FQEYP
Sbjct:   292 KSTDSFS-----GTNETLSETPIKKADPITDLENKG-----AATLLNDRSEATKIFQEYP 341

Query:   361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVC 390
             Y+FA VGDL I DVEDLLNNYKQLVFKYVC
Sbjct:   342 YMFASVGDLKIGDVEDLLNNYKQLVFKYVC 371

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

DICTYBASE|DDB_G0285073 DDB_G0285073 "vacuolar sorting protein 9 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 423 (154.0 bits), Expect = 9.7e-45, Sum P(3) = 9.7e-45
 Identities = 107/314 (34%), Positives = 163/314 (51%)

Query:    12 DFLERMRQPSAADFVKSIKSFIVSFSNNAPDP-ERDSAAVQSFLANMEAAFRAHPLWAGC 70
             +F  +++  +A D  +S+ +F+  FS N P   E     + ++   +E    + PLWA  
Sbjct:   147 NFYTKLKHKNAIDIRRSLLNFVTQFSTNGPSLIEEQGHTIITYTRELEHWVLSLPLWANA 206

Query:    71 SEEELDSAGEGLEKYVMTKLFTRVF------------ASIPDD---VKTDEQLSE-KIAL 114
              E E++   +G+EKY+M KL+   F             +I  +   + T+E L   K   
Sbjct:   207 GEAEVEGIRDGIEKYIMGKLYHCTFPPARLGGLELTEGNIVSEGSLIPTEEDLKLFKHIT 266

Query:   115 VQQFVRPENLDIKASFQ-NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXX 173
             +  F+ P++LDI+     NE    LA  EL+KIN YK PRDK+VC+ NCCKV        
Sbjct:   267 IHGFLEPQHLDIQQFINSNEQRQNLAISELRKINTYKTPRDKMVCVYNCCKVIFKLLKSV 326

Query:   174 XXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSA 233
                   NP GADEFLP+LIYV +K+NP  L SN+ Y+  +R QSR++ E A +FT+++SA
Sbjct:   327 NPNG--NPSGADEFLPILIYVVLKSNPIMLKSNITYVNTFRDQSRMMTEIACYFTHLVSA 384

Query:   234 ESFISNIDAQA-LSMEESEFERNMESAQALLS-GLSADMDGLSNQNDESEGQISVEQLIQ 291
              SFI NI     L++EESEF R  +  +  L   L  +M    N    +  QI +   I 
Sbjct:   385 VSFIENITTPVDLTIEESEFYRLRDKFELELPLKLHPEMLKRLNYKPPTNLQI-LNSTIN 443

Query:   292 SKHQGVNSTKEKEH 305
             + +  +N+     +
Sbjct:   444 NNNNNINNNNNNNN 457

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC4F6.10 vps901 "guanyl-nucleotide exchange factor Vps901 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 429 (156.1 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 98/269 (36%), Positives = 146/269 (54%)

Query:     3 NADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFR 62
             N  +F   H FLE++R  SA    K +KSF+  F+            ++ FL  +     
Sbjct:   109 NEPIF-DFHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIE 167

Query:    63 AHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSE 110
              +  WA  S+ E+D+A EG+EK V+ +L+T +F+       IP      DDV+ D  LSE
Sbjct:   168 QYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSE 227

Query:   111 KIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXX 170
             K+ L Q ++  ENLDIK    +   + LA  EL++IN Y APRDK++C+LNCCKV     
Sbjct:   228 KMELFQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYL 286

Query:   171 XXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNM 230
                          AD F+P+LI+V ++A P  L SN+ YIQR+R   +L GE  Y+ + +
Sbjct:   287 RNVV-----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTL 341

Query:   231 LSAESFISNIDAQALSMEESEFERNMESA 259
             + A SFI  +D  +L++ E EF   +E +
Sbjct:   342 MGAMSFIETLDCSSLTITEEEFNAQIEKS 370

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006623 "protein targeting to vacuole" evidence=ISO

ASPGD|ASPL0000018244 AN3678 [Emericella nidulans (taxid:162425)]

 Score = 339 (124.4 bits), Expect = 5.4e-41, Sum P(2) = 5.4e-41
 Identities = 71/166 (42%), Positives = 108/166 (65%)

Query:   100 DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWL-LAQKELQKINMYKAPRDKLVC 158
             +DV+ DE L++K+  +  +VR E+LDI     +   +L LAQ+EL KIN Y+APRDK++C
Sbjct:   407 EDVERDEVLAQKMR-IYSWVREEHLDIAPVSSSGRRFLNLAQQELLKINGYRAPRDKVIC 465

Query:   159 ILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSR 218
             ILNCCKV             ++   AD F+P+LIYV ++ANP  L SN+ YI R+R Q +
Sbjct:   466 ILNCCKVIFGLLRNAK----KSDTSADSFIPLLIYVVLQANPEHLVSNIQYILRFRNQEK 521

Query:   219 LVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLS 264
             L GEA Y+ +++  A  FI  +D  +L++ + EFERN+E+A + ++
Sbjct:   522 LGGEAGYYLSSLSGAIQFIETLDRTSLTVSDEEFERNVEAAVSAIA 567

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0289495 DDB_G0289495 "vacuolar sorting protein 9 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 337 (123.7 bits), Expect = 3.8e-33, Sum P(3) = 3.8e-33
 Identities = 89/283 (31%), Positives = 147/283 (51%)

Query:     2 ENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNN--APDPERDSAAVQSFLANMEA 59
             EN +++   H FL ++   +      SI SFI +  N   A D  R+  A+  F+ NM+ 
Sbjct:   588 EN-EIYSYEH-FLSKLE--NTLPIKSSIDSFIRTLKNRKVANDDLRE--ALLDFVDNMQN 641

Query:    60 AFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFV 119
                  P W+  SEEEL+ +   L++YV+ K++  VF    ++ K D+ LS  I  +  F+
Sbjct:   642 TLTLDPQWSQSSEEELNYSSHHLQQYVLEKIYDYVFQPSEEEAKKDQDLSMLIDKLS-FI 700

Query:   120 RPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXE 179
               E+++I     +E  W  A K L KIN  ++ R K++ I+ CCK               
Sbjct:   701 TLEHMEIPIYGFSEAMWYKAGKYLLKINFTQSCRHKVMYIMKCCKTILKHFSTHLKELS- 759

Query:   180 NPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISN 239
                GAD  LP LI+V +K NPP LHSN+++I ++   S    EA Y+ T ++SA  FI N
Sbjct:   760 ---GADFLLPNLIWVLLKTNPPFLHSNVIFISKFSDSSD--SEAIYYLTQLISAIYFIEN 814

Query:   240 IDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEG 282
             +  + L +++ E+ + M ++  ++S  S  +  L+N N+ + G
Sbjct:   815 LKPELLKIDKKEYYKLMGTSSPIISR-SPSLQSLNNNNNNNNG 856

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040426-1486 rabgef1 "RAB guanine nucleotide exchange factor (GEF) 1" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 4.4e-30, P = 4.4e-30
 Identities = 92/259 (35%), Positives = 134/259 (51%)

Query:    12 DFLERMRQPSAADFVKSIKSFIVSFSNNAPD--PERDSAAVQSFLANMEAAFRAHPLWAG 69
             +FL+ + +P   +  K  ++FI S  N   D   E  S  VQ F   M      H  + G
Sbjct:   153 EFLKTLHKPGR-EIHKHSRAFIDSMGNKKQDLSAEELSECVQDFYQGMSDRLLNH--FKG 209

Query:    70 CSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKI-AL----VQQFVRPEN 123
              S E++D   + +EKY+MT+L+  VF     DD K D     +I AL    +Q    P  
Sbjct:   210 -SSEKVDRVMDQVEKYIMTRLYKSVFCPETSDDEKKDLATQHRIRALHWVTIQMLCVPVE 268

Query:   124 LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPG 183
              +I    +   S + A  ++ +++  + PRDKL CI +C K                P  
Sbjct:   269 EEIP---EVSDSVVKAITDIIEMDSKRVPRDKLACITSCSK----HIFNAIRVTKNEPAS 321

Query:   184 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDA 242
             AD+FLP LIY+ +KANPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DA
Sbjct:   322 ADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDA 381

Query:   243 QALSMEESEFERNMESAQA 261
             Q+L++   +FER M S QA
Sbjct:   382 QSLNLSPEDFERYM-SGQA 399

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C0P2 RABGEF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 319 (117.4 bits), Expect = 2.0e-28, P = 2.0e-28
 Identities = 80/251 (31%), Positives = 132/251 (52%)

Query:    12 DFLERMRQPSAADFVKSIKSFIVSFSNNAP-DPERDSAAVQSFLANMEAAFRAHPLWAGC 70
             +FL+   +P   D  K  K F+ + ++      E  S   Q F  N+  A +    W   
Sbjct:   144 EFLKTYHKPGQ-DIYKQCKLFLDTMNHKRDLSIEEQSECAQDFYQNV--AEKLQTRWK-V 199

Query:    71 SEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKAS 129
               E+++ A + +EKY+MT+ +  VF     DD K D  + ++I  +  +V P+ L +  +
Sbjct:   200 PPEKVEKAMDQIEKYIMTRQYKYVFCPETTDDEKKDLAVQKRIRALH-WVTPQMLCVPVN 258

Query:   130 FQ-NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADE 186
              +  E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+
Sbjct:   259 EEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADD 314

Query:   187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQAL 245
             FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L
Sbjct:   315 FLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSL 374

Query:   246 SMEESEFERNM 256
             ++ + +F+R M
Sbjct:   375 NLSQEDFDRFM 385

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

UNIPROTKB|F6Y7P9 RABGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 310 (114.2 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 77/251 (30%), Positives = 128/251 (50%)

Query:    12 DFLERMRQPSAADFVKSIKSFIVSFSNNAP-DPERDSAAVQSFLANMEAAFRAHPLWAGC 70
             DFL+   + +  +  K  K F+ +         E  S   Q F  N+    +        
Sbjct:   145 DFLKTFHK-TGQEIYKQTKMFLEAMHYKRDLSIEEQSECTQDFYQNVAERMQTR---GKV 200

Query:    71 SEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKAS 129
               E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +  +V P+ L +  +
Sbjct:   201 PPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVN 259

Query:   130 FQ-NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADE 186
              + +E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+
Sbjct:   260 EEISEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADD 315

Query:   187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQAL 245
             FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L
Sbjct:   316 FLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSL 375

Query:   246 SMEESEFERNM 256
             ++ + +F+R M
Sbjct:   376 NLSQEDFDRYM 386

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-040426-813 rabgef1l "RAB guanine nucleotide exchange factor (GEF) 1, like" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 4.1e-26, P = 4.1e-26
 Identities = 88/269 (32%), Positives = 138/269 (51%)

Query:    12 DFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERD-SAAVQSFLANMEAAFRAHPLWAGC 70
             DFL+  ++P   D  K   +F  + ++       D S +VQ F  +M    + +  + G 
Sbjct:   137 DFLKPFQRPGY-DIFKQCHAFAENIAHKKVVGCEDLSDSVQDFYQSMSEYLQTN--FKG- 192

Query:    71 SEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKAS 129
             S E +++  E +E+YVM +L+ ++F     DD K D  + ++I  +  +V    L +   
Sbjct:   193 SPEVVETVMEEVERYVMGRLYEQLFCPDHTDDEKKDLTVQKRIRALH-WVSIAMLCVPLD 251

Query:   130 FQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADE 186
              Q      S   A+ +L  ++  K P++KL C+  C K                   AD+
Sbjct:   252 EQIPKVSDSVERAKTDLINLDSKKVPKEKLACVTRCSKHILTAIQGSKKAAAS----ADD 307

Query:   187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQAL 245
             FLP L+Y+ +KANPP+LHSN+ YI RY   SRL+ GE  Y+FTN+  A SFI  +DAQ+L
Sbjct:   308 FLPALVYIILKANPPRLHSNIQYITRYCNPSRLMSGEDGYYFTNLCCAVSFIEKLDAQSL 367

Query:   246 SMEESEFERNMESAQALLSGLSADMDGLS 274
             ++   +FER M  A +  SG S   +G S
Sbjct:   368 NLSPEDFERYMSGATSP-SGCSTQ-NGFS 394

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT31	VPS9A_ARATH	No assigned EC number	0.6483	0.9412	0.8634	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
pfam02204	104	pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9)	5e-38
smart00167	117	smart00167, VPS9, Domain present in VPS9	5e-28

>gnl|CDD|216928 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain

 Score =  133 bits (338), Expect = 5e-38
 Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 136 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVT 195
           W  AQ+EL+K+N  K+PR+KL C+L  CK+I   L  ++      P GAD+ LP+LIYV 
Sbjct: 1   WEKAQEELKKLNEAKSPREKLKCLLRTCKLITEALSKSN---PGEPLGADDLLPILIYVL 57

Query: 196 IKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
           IKANPP L+SNL +I  +R    L GE  Y+ T + +A  FI N+D
Sbjct: 58  IKANPPNLYSNLQFISLFRDPDLLSGEEGYYLTTLEAALEFIENLD 103

Length = 104

>gnl|CDD|128469 smart00167, VPS9, Domain present in VPS9

 Score =  107 bits (269), Expect = 5e-28
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 136 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVT 195
             + Q EL+ + +YK+P DK+ C+L  CK+I  LL   S  +     GAD+FLPVLIYV 
Sbjct: 2   VEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVA----GADDFLPVLIYVI 57

Query: 196 IKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI-DAQALSMEESEFER 254
           IK +P  L  N  Y++ +   S L GE  Y+ T++ +A + I  + +A AL +   +   
Sbjct: 58  IKCDPRDLLLNAEYMEEFLEPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQELE 117

Domain present in yeast vacuolar sorting protein 9 and other proteins. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
smart00167	117	VPS9 Domain present in VPS9. Domain present in yea	100.0
PF02204	104	VPS9: Vacuolar sorting protein 9 (VPS9) domain; In	99.92
KOG2319	477	consensus Vacuolar assembly/sorting protein VPS9 [	99.78
KOG2320	651	consensus RAS effector RIN1 (contains VPS domain)	99.75
KOG2319	477	consensus Vacuolar assembly/sorting protein VPS9 [	99.31

>smart00167 VPS9 Domain present in VPS9

Probab=100.00  E-value=1.2e-33  Score=249.69  Aligned_cols=115  Identities=35%  Similarity=0.584  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhh
Q 011812          135 SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYR  214 (477)
Q Consensus       135 ~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~  214 (477)
                      +|..|+.||++||.+++|+|||.||++||+.|++.++.    ..+.++|||||||+||||||||+||+|+||++||++|+
T Consensus         1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~----~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~   76 (117)
T smart00167        1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLET----QSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFL   76 (117)
T ss_pred             CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc----ccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHC
Confidence            59999999999999999999999999999999998863    34667999999999999999999999999999999999


Q ss_pred             cccccCCchhhHHhhHHHHHHHHHhCCCCCCCC-CHHHHH
Q 011812          215 RQSRLVGEAAYFFTNMLSAESFISNIDAQALSM-EESEFE  253 (477)
Q Consensus       215 ~~s~L~GE~gYyLTtLeaAv~FI~~ld~~sLsi-~~eeF~  253 (477)
                      +++.+.||.|||||||++|++||++++.++|.+ ++++|+
T Consensus        77 ~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~~~~~~~~  116 (117)
T smart00167       77 EPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQEL  116 (117)
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHCCHHhCCccCHHHhc
Confidence            999999999999999999999999999999974 666664

Domain present in yeast vacuolar sorting protein 9 and other proteins.

>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins

Probab=99.92  E-value=3.2e-25  Score=189.33  Aligned_cols=103  Identities=41%  Similarity=0.706  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhc
Q 011812          136 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR  215 (477)
Q Consensus       136 ~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~  215 (477)
                      |..|+.+|++|+..++|.+|+.||.+|++.|.+.+..   ...+..+|||||||+|+|||+||+++++++++.||+.|+.
T Consensus         1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~---~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~   77 (104)
T PF02204_consen    1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKT---SKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFID   77 (104)
T ss_dssp             -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHH---HCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc---ccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcc
Confidence            7899999999999999999999999999999998822   3567889999999999999999999999999999999998


Q ss_pred             ccccCCchhhHHhhHHHHHHHHHhCC
Q 011812          216 QSRLVGEAAYFFTNMLSAESFISNID  241 (477)
Q Consensus       216 ~s~L~GE~gYyLTtLeaAv~FI~~ld  241 (477)
                      ++.+.||.|||+|||++|++||++++
T Consensus        78 ~~~~~~e~~y~ltt~~aA~~~i~~~~  103 (104)
T PF02204_consen   78 SSLLSGEEGYYLTTFEAAVEYIQNLE  103 (104)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHcc
Confidence            88889999999999999999999986

; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.

>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.6e-20  Score=198.46  Aligned_cols=363  Identities=36%  Similarity=0.450  Sum_probs=273.8

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCCcChhhHHHHHHHHHHHhcCCCCCCcc
Q 011812           46 DSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLD  125 (477)
Q Consensus        46 ~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~LEkyVm~kLYd~lF~~~~~d~e~D~~L~~KI~~L~~~Itp~~L~  125 (477)
                      +...+++++..+...+..++.|+.+.+++.+..+..+++++|+...+.+|.....+...|.....+...++..+.+...+
T Consensus         3 ~~~~~~~~~~~~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   82 (477)
T KOG2319|consen    3 DPDLVQSTVAKYSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFASDVEEVDADVLNEIDDSSLQTIISPEASG   82 (477)
T ss_pred             ccccccccccchhhhhccccccccchhhhhhhccccccchhcccccccCcchhhhhhhhHhhhccccchhhhhcCHhhcc
Confidence            45678899999999999999999999999999999999999999999998843334445555555555555677888888


Q ss_pred             ccCCCCCchhHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhh
Q 011812          126 IKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHS  205 (477)
Q Consensus       126 I~~~~~~e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~S  205 (477)
                      ..+.+.....|..|+.++..++.+++|.+|+.|++.||+.++....+...    .+.-+++++|.++|+..+++++.+++
T Consensus        83 ~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (477)
T KOG2319|consen   83 DQETFNQNTSIENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSI----APNQASQFLPVLIFVTKKANPQQFHS  158 (477)
T ss_pred             CccchhhccchhhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhc----ccccccccccceeeeccccCchhhhh
Confidence            88888888899999999999999999999999999999999988765432    22239999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccccCCCCCCcccccch
Q 011812          206 NLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQIS  285 (477)
Q Consensus       206 nL~YI~~F~~~s~L~GE~gYyLTtLeaAv~FI~~ld~~sLsi~~eeF~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (477)
                      ++.|..+|+....+.++.+||++++..+..||-+....++.+++.+|+..|..+.+...++..-....      ..+.+.
T Consensus       159 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i------~~~~~~  232 (477)
T KOG2319|consen  159 NVLYEMRNRREGPLEGENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDI------PVLEQI  232 (477)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccc------cccccc
Confidence            99999999999888899999999999999999999999999999999999999999888774421111      111111


Q ss_pred             hhhhhhcccc--CCCCCCcccCCCCCC-CccccccccccccccCCCccCCCChHHHHhhcchhhhchh-hhhcccccccc
Q 011812          286 VEQLIQSKHQ--GVNSTKEKEHLTPVR-SSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEE-KASQVFQEYPY  361 (477)
Q Consensus       286 ~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~-~~~~~~~~y~~  361 (477)
                      +....-....  .+..-+. ...++.. ...+       .+.. .++-..-...|.|+.|+-.++..- ..-..++.|+|
T Consensus       233 ~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~-------~~~~-~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~  303 (477)
T KOG2319|consen  233 PELSKRVALASQRLALIRE-LLTPRDKKEACA-------LNCE-KPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHL  303 (477)
T ss_pred             cchhHHHHHHHHHHHHHHH-hhcchhhhHHHH-------HHHH-HHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCccc
Confidence            1100000000  0000000 0000000 0000       0111 133334456678999977777653 56667799999


Q ss_pred             cccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHhhhhhhhcCCCCCcccc
Q 011812          362 LFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVE  428 (477)
Q Consensus       362 l~a~~~dl~~~dv~~ll~~yk~lv~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (477)
                      +.+...+++.+.++.+++.|+.++++|.+++++++.. ..+.+.++..|.-.+..+.+..+++...+
T Consensus       304 ~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~q~~~~~~~~~~~~~~~~~e  369 (477)
T KOG2319|consen  304 VSNIQYILRFRAPERLSGEEKYYLFTYACASSDIFDA-TLLSLTISSLQDFAREHTAYESEEVSLRE  369 (477)
T ss_pred             ccHHHHHHhcccHHhhhccchhhhhhhhhhhhhhhhh-hhhhcccchhhhhhhhccchhhhhhhhcc
Confidence            9999999999999999999999999999999999998 56677777777665555556655544433

>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.2e-17  Score=175.68  Aligned_cols=225  Identities=21%  Similarity=0.308  Sum_probs=175.4

Q ss_pred             HhcCCCchHHHHHHHHHHHHhhcCCC---CchhhHHHHHHHHHHHHHHHHhCCCCC------CCCHHHHHHHHH-HHHHH
Q 011812           16 RMRQPSAADFVKSIKSFIVSFSNNAP---DPERDSAAVQSFLANMEAAFRAHPLWA------GCSEEELDSAGE-GLEKY   85 (477)
Q Consensus        16 ~Lr~p~a~~lvk~IksFI~~F~~~~~---~~ee~s~~Vq~F~~~~~~~L~~~p~w~------~~se~eld~i~e-~LEky   85 (477)
                      .|..+.+..+.--+++|+..+...-.   ++-..-.-|++|++.+.+.|..++--.      ..++..+|.+.| +|.+.
T Consensus       271 ~L~qd~~tyfG~lvqD~vs~~~d~~~~~td~a~mL~~iRq~lt~~k~yL~qs~e~~~~v~~~~~s~~~leavlEs~Lhk~  350 (651)
T KOG2320|consen  271 ELEQDKMTYFGSLVQDYVSDYEDVWHRPTDSASMLQSIRQALTRRKNYLSQSPELDTPVQPSLLSETPLEAVLESALHKS  350 (651)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhHHHHhhcCCCCCCccccccCcchHHHHHHHHHHHh
Confidence            46677777777788888877765421   222334567889999999998876432      245678999988 79999


Q ss_pred             HHHhHHHHhcCCCCcChhhHHHHH---HHHHHHhcCCCCCCccccCCCCCchhHHHHHHHHHhcccCCChHHHHHHHHHH
Q 011812           86 VMTKLFTRVFASIPDDVKTDEQLS---EKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNC  162 (477)
Q Consensus        86 Vm~kLYd~lF~~~~~d~e~D~~L~---~KI~~L~~~Itp~~L~I~~~~~~e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~  162 (477)
                      |+.++-..|.........+|-.+.   +..... .--.+..||+--........+.....+.+|.+..+|..||..++++
T Consensus       351 vLkPlkp~l~~~l~~~h~~dGsl~~l~en~~vv-r~~~~~~lG~~~~~Ps~~~mEqvk~k~~~m~r~YSP~kkl~~Llk~  429 (651)
T KOG2320|consen  351 VLKPLKPNLSAQLPPVHSKDGSLQQLKENQDVV-RAANPTALGVFLSTPSDVLMEQVKQKFTAMQRRYSPSKKLHALLKA  429 (651)
T ss_pred             hccccchhHhhhcchhhhhccHHHHHhccccee-cccCccccceeccCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            999999888887765566664443   222111 2345677887433333344567778889999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhcccccCCchhhHHhhHHHHHHHHHhCCC
Q 011812          163 CKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDA  242 (477)
Q Consensus       163 ~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L~GE~gYyLTtLeaAv~FI~~ld~  242 (477)
                      |+.|+..+.+   ...+...|||||||+|.||+.|++.+.+..+++||++|..++.+.||+|||+|++.+|+++|++++.
T Consensus       430 ckLly~~~~~---~~~g~~~gaDdflP~lsyvla~s~~~e~~~e~eYM~ELLdP~l~~geggYYLTs~~~al~~iks~~~  506 (651)
T KOG2320|consen  430 CKLLYAGMGG---DNEGLAYGADDFLPVLSYVLARSDLQELLTEAEYMMELLDPDLLSGEGGYYLTSLYGALEHIKSLGR  506 (651)
T ss_pred             HHHHHHHhcc---CCCCCCCCchhhHHHHHHHHHhcchhcchHHHHHHHHhcChhhhcCccchhHHHHHHHHHHHhcccc
Confidence            9999988753   2356788999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 011812          243 QA  244 (477)
Q Consensus       243 ~s  244 (477)
                      ..
T Consensus       507 ~~  508 (651)
T KOG2320|consen  507 IT  508 (651)
T ss_pred             cc
Confidence            65

>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.4e-11  Score=132.59  Aligned_cols=240  Identities=30%  Similarity=0.334  Sum_probs=183.7

Q ss_pred             ccchHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCc----hhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 011812            6 VFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDP----ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEG   81 (477)
Q Consensus         6 ~~~~f~~FL~~Lr~p~a~~lvk~IksFI~~F~~~~~~~----ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~   81 (477)
                      ....++.+|..+..-...-+....++|+..+......+    -......++|+......++.-.   .-........+..
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~l~~~~~~~~~  181 (477)
T KOG2319|consen  105 LYKAPHDKLQCILSQCKLIFELLLKSSIAPNQASQFLPVLIFVTKKANPQQFHSNVLYEMRNRR---EGPLEGENKLYFT  181 (477)
T ss_pred             cccCchhHHHHHHHHHhhhhHHHHHhhcccccccccccceeeeccccCchhhhhhHHHHHHHHH---hhhHHHHHHHHHH
Confidence            45778888888776666666676677776665111000    0222345567777655554211   0111122334446


Q ss_pred             HHHHHHHhHHHHhcCCCC-cChhhHHHHHHHHHHHhcCCCCCCccccCCCCCc---hhHHHHHHHHHhcccCCChHH-HH
Q 011812           82 LEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNE---TSWLLAQKELQKINMYKAPRD-KL  156 (477)
Q Consensus        82 LEkyVm~kLYd~lF~~~~-~d~e~D~~L~~KI~~L~~~Itp~~L~I~~~~~~e---~~~~~Ai~eL~kIn~~kSP~D-KL  156 (477)
                      .+...+..++..++.... ++.+.|..+..+++++ +|+++..++|+......   .....+...+..|+.+..|++ |.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  260 (477)
T KOG2319|consen  182 CEDSAEAFISNILLDSETSDDAEFDLALSKAIRRL-QGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELLTPRDKKE  260 (477)
T ss_pred             HhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhh-cccchhhccccccccccchhHHHHHHHHHHHHHHHhhcchhhhH
Confidence            777888888888888764 4678899999999998 89999999988765432   245678899999999999999 79


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhcccccCCchhhHHhhHHHHHHH
Q 011812          157 VCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF  236 (477)
Q Consensus       157 ~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L~GE~gYyLTtLeaAv~F  236 (477)
                      .|.++|++.|+..+..    ......++|.|+|.++|.+++.+++++.++++|+.+|+.+.++.|+.+|++.++.++-.+
T Consensus       261 ~~~~~~~~~~f~~l~~----~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  336 (477)
T KOG2319|consen  261 ACALNCEKPIFSALKI----TDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYACASSD  336 (477)
T ss_pred             HHHHHHHHHHHhhhhc----cchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhhhhhh
Confidence            9999999999998763    456778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCHH-HHH
Q 011812          237 ISNIDAQALSMEES-EFE  253 (477)
Q Consensus       237 I~~ld~~sLsi~~e-eF~  253 (477)
                      |......++.|... .|.
T Consensus       337 ~~~~~~~~~~i~~~q~~~  354 (477)
T KOG2319|consen  337 IFDATLLSLTISSLQDFA  354 (477)
T ss_pred             hhhhhhhhcccchhhhhh
Confidence            99999999998774 454

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	477
2efc_A	267	Ara7-GdpATVPS9A Length = 267		1e-126
2efh_A	267	Ara7-GdpATVPS9A(D185N) Length = 267		1e-125
2ot3_A	274	Crystal Structure Of Rabex-5 Vps9 Domain In Complex		7e-26
1txu_A	273	Crystal Structure Of The Vps9 Domain Of Rabex-5 Len		6e-24

>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A Length = 267

Iteration: 1
 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/265 (78%), Positives = 236/265 (89%)
Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 3   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 62
Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct: 63  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 122
Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXEN 180
           PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV             EN
Sbjct: 123 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 182
Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
            PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 183 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 242
Query: 241 DAQALSMEESEFERNMESAQALLSG 265
           DA+++S++E+EFE+NMESA+A +SG
Sbjct: 243 DAKSISLDEAEFEKNMESARARISG 267

>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N) Length = 267

Iteration: 1
 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/265 (78%), Positives = 236/265 (89%)
Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 3   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 62
Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct: 63  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 122
Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXEN 180
           PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV             EN
Sbjct: 123 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 182
Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
            PGA+EFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 183 APGANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 242
Query: 241 DAQALSMEESEFERNMESAQALLSG 265
           DA+++S++E+EFE+NMESA+A +SG
Sbjct: 243 DAKSISLDEAEFEKNMESARARISG 267

>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With Nucleotide Free Rab21 Length = 274

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 21/222 (9%)
Query: 44  ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS-IPDDV 102
           E  S   Q F  N+    +          E ++   + +EKY+MT+L+  VF     DD 
Sbjct: 53  EEQSECAQDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDE 109
Query: 103 KTDEQLSEKIALV-----QQFVRPENLDIKASFQNETSWLLAQKELQKINM--YKAPRDK 155
           K D  + ++I  +     Q    P N DI      E S ++ +     I M   + PRDK
Sbjct: 110 KKDLAIQKRIRALRWVTPQMLCVPVNEDIP-----EVSDMVVKAITDIIEMDSKRVPRDK 164
Query: 156 LVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR 215
           L CI  C K                P  AD+FLP LIY+ +K NPP+L SN+ YI R+  
Sbjct: 165 LACITKCSK----HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCN 220
Query: 216 QSRLV-GEAAYFFTNMLSAESFISNIDAQALSMEESEFERNM 256
            SRL+ GE  Y+FTN+  A +FI  +DAQ+L++ + +F+R M
Sbjct: 221 PSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 262

>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5 Length = 273

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 73  EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 126
           E ++   + +EKY+ T+L+  VF     DD K D  + ++I  +     Q    P N DI
Sbjct: 81  ERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQXLCVPVNEDI 140
Query: 127 KASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADE 186
               +     + A  ++ + +  + PRDKL CI  C K                P  AD+
Sbjct: 141 P---EVSDXVVKAITDIIEXDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADD 193
Query: 187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL-VGEAAYFFTNMLSAESFISNIDAQAL 245
           FLP LIY+ +K NPP+L SN+ YI R+   SRL  GE  Y+FTN+  A +FI  +DAQ+L
Sbjct: 194 FLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLDAQSL 253
Query: 246 SMEESEFER 254
           ++ + +F+R
Sbjct: 254 NLSQEDFDR 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
2efe_A	267	Similarity to vacuolar protein sorting-associated	1e-90
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	2e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* Length = 267

 Score =  276 bits (706), Expect = 1e-90
 Identities = 221/265 (83%), Positives = 248/265 (93%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
           MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 3   MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 62

Query: 61  FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
           FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQQF+ 
Sbjct: 63  FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 122

Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
           PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA NEN
Sbjct: 123 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 182

Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
            PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 183 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 242

Query: 241 DAQALSMEESEFERNMESAQALLSG 265
           DA+++S++E+EFE+NMESA+A +SG
Sbjct: 243 DAKSISLDEAEFEKNMESARARISG 267

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A Length = 274

 Score =  201 bits (511), Expect = 2e-61
 Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 15/267 (5%)

Query: 1   MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAP-DPERDSAAVQSFLANMEA 59
           +E   V     +FL+     +  +  K  K F+           E  S   Q F  N+  
Sbjct: 10  IETDRVSKEFIEFLKTF-HKTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAE 68

Query: 60  AFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQF 118
             +          E ++   + +EKY+MT+L+  VF     DD K D  + ++I  ++ +
Sbjct: 69  RMQT---RGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-W 124

Query: 119 VRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASI 175
           V P+ L +  +          + A  ++ +++  + PRDKL CI  C K I     NA  
Sbjct: 125 VTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHI----FNAIK 180

Query: 176 ALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAE 234
                P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A 
Sbjct: 181 ITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAV 240

Query: 235 SFISNIDAQALSMEESEFERNMESAQA 261
           +FI  +DAQ+L++ + +F+R M    +
Sbjct: 241 AFIEKLDAQSLNLSQEDFDRYMSGQTS 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 67/230 (29%)

Query: 71  SEEELDSAGEGLEKYVMTKLFTRVFASIPDD-----VKTD--------EQLSEKIALVQQ 117
           +   LD     L    +  L  +     P D     + T+        E + + +A    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 118 F--VRPENLD--IKASFQNETSWLLAQKELQKINMYKA----PRD-----KLVCIL---- 160
           +  V  + L   I++S        L   E +K  M+      P        L+ ++    
Sbjct: 347 WKHVNCDKLTTIIESSLNV-----LEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 161 --NCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKA---NPPQLHSNLLYIQRYRR 215
             +   V+ N L   S+ + + P  +   +P  IY+ +K    N   LH ++  +  Y  
Sbjct: 400 IKSDVMVVVNKLHKYSL-VEKQPKESTISIP-SIYLELKVKLENEYALHRSI--VDHYNI 455

Query: 216 QSRLVGEAA-------YFFTNMLSAESFI----SNIDAQALSMEESEFER 254
                 +         YF+       S I     NI+        + F  
Sbjct: 456 PKTFDSDDLIPPYLDQYFY-------SHIGHHLKNIE---HPERMTLFRM 495

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 67/437 (15%), Positives = 134/437 (30%), Gaps = 145/437 (33%)

Query: 80  EGLEKYVMTKLFTRVFASI---PDDVKTDEQL-----SEKIALVQQFVRPENLDIKASFQ 131
           + + K +++K        I    D V    +L     S++  +VQ+FV       +   +
Sbjct: 39  QDMPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLR 88

Query: 132 NETSWLLA--QKELQ----KINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGAD 185
               +L++  + E +       MY   RD+L                     N+N     
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--------------------YNDNQV--- 125

Query: 186 EFLPVLIYVTIKANPPQLHSNLLYIQRYRR----------QSRLVGEAAYFFTNMLSAES 235
            F      V+      +L   LL ++  +           ++ +  +          +  
Sbjct: 126 -FAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-------CLSYK 175

Query: 236 FISNIDAQA--LSM-EESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQS 292
               +D +   L++   +  E  +E  Q LL  +        N    S+   +++  I S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKLRIHS 229

Query: 293 KHQGVNST-KEKEH------LTPVRSSESKSVKK--------VTFAKDQEPITKVPSLSE 337
               +    K K +      L  V+++  K+           +T        T+      
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLT--------TR------ 273

Query: 338 LENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGS 397
              K  T  L     + +  ++         LT  +V+ LL  Y             L  
Sbjct: 274 --FKQVTDFLSAATTTHISLDHH-----SMTLTPDEVKSLLLKY-------------LDC 313

Query: 398 AASSLPSSVL---PSQVQLQVETMKAPEEHKRVE--LNDESEKDTSETNDSSNQVLNSNE 452
               LP  VL   P ++ +  E+++  +     +   +   +K  +   +SS  VL   E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDK-LTTIIESSLNVLEPAE 370

Query: 453 EK-------VESQLPED 462
            +       V    P  
Sbjct: 371 YRKMFDRLSV---FPPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 46/294 (15%), Positives = 90/294 (30%), Gaps = 85/294 (28%)

Query: 10  LHDFL---ERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAH-- 64
           + D L   +  +  +       I+S +     N  +P               + F     
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSL-----NVLEPAEYRKMFDRL-----SVFPPSAH 386

Query: 65  -P------LWAGCSEEELDSAGEGLEKYVM----TKLFTRVFASIPD-DVKTDEQLSEKI 112
            P      +W    + ++      L KY +     K  T    SIP   ++   +L  + 
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLENEY 443

Query: 113 ALVQQFVRPENLDIKASFQNETSWLLAQKE-----------LQKINMYKAPRDKLVCILN 161
           AL +  V  ++ +I  +F ++   L+               L+ I   +  R  L     
Sbjct: 444 ALHRSIV--DHYNIPKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPE--RMTL----- 492

Query: 162 CCKVINNLLLNASIALNENPPGADEFLPV-LIYVTIKANPPQLHSNLLY-IQRYRRQ--- 216
                  + L+              FL   + + +   N      N L  ++ Y+     
Sbjct: 493 ----FRMVFLD------------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 217 -----SRLVGEAAYFF----TNMLSAESFISNIDAQALSMEESE-FERNMESAQ 260
                 RLV     F      N++ ++   +++   AL  E+   FE   +  Q
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKY--TDLLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
2efe_A	267	Similarity to vacuolar protein sorting-associated	100.0
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	100.0

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*

Probab=100.00  E-value=2.2e-63  Score=492.93  Aligned_cols=264  Identities=83%  Similarity=1.277  Sum_probs=235.5

Q ss_pred             CCCCcccchHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 011812            1 MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGE   80 (477)
Q Consensus         1 ~~~~~~~~~f~~FL~~Lr~p~a~~lvk~IksFI~~F~~~~~~~ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e   80 (477)
                      |||+|++++|+.||++||+|+|.+|+++|++||.+|.+..+++++++++||+||+.+.++|+.|+.|+++++++++.+++
T Consensus         3 ~~~~~~~~~f~~Fl~~l~~~~a~~~~~~i~~Fi~~f~~~~~~~~e~~~~v~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e   82 (267)
T 2efe_A            3 MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGCSEEELDSAGD   82 (267)
T ss_dssp             ----------------CCSGGGHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHSCGGGTTCCHHHHHHHHH
T ss_pred             cccCcchhHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhcCCCCcChhhHHHHHHHHHHHhcCCCCCCccccCCCCCchhHHHHHHHHHhcccCCChHHHHHHHH
Q 011812           81 GLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCIL  160 (477)
Q Consensus        81 ~LEkyVm~kLYd~lF~~~~~d~e~D~~L~~KI~~L~~~Itp~~L~I~~~~~~e~~~~~Ai~eL~kIn~~kSP~DKL~cIl  160 (477)
                      +||+|||++||+++|++.+++.++|..|.+||+.|++||+|+||||++.+.++.+|..|+++|++|+.+++|+|||.||+
T Consensus        83 ~iEk~v~~~ly~~lf~~~~~d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~~~A~~eL~ki~~~~sP~dKl~~l~  162 (267)
T 2efe_A           83 GLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCIL  162 (267)
T ss_dssp             HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCSHHHHHHHHTGGGCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            99999999999999999888889999999999999669999999999999888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhcccccCCchhhHHhhHHHHHHHHHhC
Q 011812          161 NCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI  240 (477)
Q Consensus       161 ~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L~GE~gYyLTtLeaAv~FI~~l  240 (477)
                      +||+.|++.+.+.+..+++.++|||||||+||||||||+||+|+||++||++|++++.+.||.|||||||++|++||+++
T Consensus       163 ~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l  242 (267)
T 2efe_A          163 NCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI  242 (267)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhC
Confidence            99999999887544445678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhc
Q 011812          241 DAQALSMEESEFERNMESAQALLS  264 (477)
Q Consensus       241 d~~sLsi~~eeF~~~m~~a~~~~~  264 (477)
                      +.++|+|+++||+++|+.|++++.
T Consensus       243 ~~~~L~i~~~ef~~~~~~~~~~~~  266 (267)
T 2efe_A          243 DAKSISLDEAEFEKNMESARARIS  266 (267)
T ss_dssp             CTTTTTCCHHHHHHHHHHHHHC--
T ss_pred             CHhhCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999988654

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A

Probab=100.00  E-value=6.6e-53  Score=419.57  Aligned_cols=248  Identities=31%  Similarity=0.555  Sum_probs=224.6

Q ss_pred             CCcccchHHHHHHHhcCCCchHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 011812            3 NADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNN-APDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEG   81 (477)
Q Consensus         3 ~~~~~~~f~~FL~~Lr~p~a~~lvk~IksFI~~F~~~-~~~~ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~   81 (477)
                      -...+++|++||++|++| +.+++++|++||.+|.+. .+++++.+++|++||..+.++|..+  |++ ++++++.++++
T Consensus        12 ~~~~~~df~~FL~~~~~~-~~~l~k~i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~~~--~~~-s~~~~~~~~~~   87 (274)
T 2ot3_A           12 TDRVSKEFIEFLKTFHKT-GQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTR--GKV-PPERVEKIMDQ   87 (274)
T ss_dssp             ----CHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHST--TCC-CHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--hcc-CHHHHHHHHHH
Confidence            345679999999999999 899999999999999975 4688999999999999999999987  886 67889999999


Q ss_pred             HHHHHHHhHHHHhcCCCCc-ChhhHHHHHHHHHHHhcCCCCCCccccCCCCCc---hhHHHHHHHHHhcccCCChHHHHH
Q 011812           82 LEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPENLDIKASFQNE---TSWLLAQKELQKINMYKAPRDKLV  157 (477)
Q Consensus        82 LEkyVm~kLYd~lF~~~~~-d~e~D~~L~~KI~~L~~~Itp~~L~I~~~~~~e---~~~~~Ai~eL~kIn~~kSP~DKL~  157 (477)
                      ||+|||.+||+.+|++... +..+|..|++||+.| +||+|+||||+..+...   ..|..|+++|++|+.++||+|||.
T Consensus        88 iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L-~~i~~~~L~I~~~~~~p~~~~~~~~A~~eL~~i~~~~sP~dKL~  166 (274)
T 2ot3_A           88 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLA  166 (274)
T ss_dssp             HHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHH-cCCCHHHcCCCcccCCchHHHHHHHHHHHHHHccccCCHHHHHH
Confidence            9999999999999998754 577899999999999 79999999999876432   368999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhccccc-CCchhhHHhhHHHHHHH
Q 011812          158 CILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL-VGEAAYFFTNMLSAESF  236 (477)
Q Consensus       158 cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L-~GE~gYyLTtLeaAv~F  236 (477)
                      ||++||+.|++.++..    .+.++|||||||+||||||||+||+|+||++||++|++++.+ .||.|||||||++|++|
T Consensus       167 ~l~~~~k~I~~~l~~~----~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~f  242 (274)
T 2ot3_A          167 CITKCSKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAF  242 (274)
T ss_dssp             HHHHHHHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHH
Confidence            9999999999988642    356799999999999999999999999999999999999875 79999999999999999


Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHH
Q 011812          237 ISNIDAQALSMEESEFERNMESA  259 (477)
Q Consensus       237 I~~ld~~sLsi~~eeF~~~m~~a  259 (477)
                      |++++.++|+|+++||+++|+.+
T Consensus       243 I~~l~~~~L~i~~~ef~~~~~~~  265 (274)
T 2ot3_A          243 IEKLDAQSLNLSQEDFDRYMSGQ  265 (274)
T ss_dssp             HHHCCTGGGTCCHHHHHHHHTTS
T ss_pred             HHhCCHHhcCCCHHHHHHHHhhc
Confidence            99999999999999999999744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d2ot3a1	249	a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor	4e-69

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  218 bits (557), Expect = 4e-69
 Identities = 77/252 (30%), Positives = 125/252 (49%), Gaps = 15/252 (5%)

Query: 11  HDFLERMRQPSAADFVKSIKSFIVSFSNNAP-DPERDSAAVQSFLANMEAAFRAHPLWAG 69
            +FL+     +  +  K  K F+           E  S   Q F  N+    +       
Sbjct: 5   IEFLKTFH-KTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQT---RGK 60

Query: 70  CSEEELDSAGEGLEKYVMTKLFTRVFASI-PDDVKTDEQLSEKIALVQQFVRPENLDIKA 128
              E ++   + +EKY+MT+L+  VF     DD K D  + ++I  ++ +V P+ L +  
Sbjct: 61  VPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLCVPV 119

Query: 129 SFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGAD 185
           +          + A  ++ +++  + PRDKL CI  C K I N +          P  AD
Sbjct: 120 NEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKIT----KNEPASAD 175

Query: 186 EFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQA 244
           +FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+
Sbjct: 176 DFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQS 235

Query: 245 LSMEESEFERNM 256
           L++ + +F+R M
Sbjct: 236 LNLSQEDFDRYM 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d2ot3a1	249	Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Hom	100.0

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=5.4e-52  Score=404.08  Aligned_cols=241  Identities=32%  Similarity=0.581  Sum_probs=220.4

Q ss_pred             chHHHHHHHhcCCCchHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Q 011812            8 LGLHDFLERMRQPSAADFVKSIKSFIVSFSNN-APDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYV   86 (477)
Q Consensus         8 ~~f~~FL~~Lr~p~a~~lvk~IksFI~~F~~~-~~~~ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~LEkyV   86 (477)
                      .+|++||+.|+ +.+.+|.+++++|+..|... ....++..+.|++||+.|.+++..   |.+.++++++.++++||+||
T Consensus         2 ~df~~fl~~~~-~~~~~~~k~~~~Fi~~~~~~~~~~~~e~~~~i~~f~~~~~~~l~~---~~~~~~~~~~~~~~~vEk~i   77 (249)
T d2ot3a1           2 KEFIEFLKTFH-KTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQT---RGKVPPERVEKIMDQIEKYI   77 (249)
T ss_dssp             HHHHHHHHTTH-HHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHS---TTCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHH
Confidence            68999999985 56999999999999999764 467899999999999999999974   77888999999999999999


Q ss_pred             HHhHHHHhcCCCC-cChhhHHHHHHHHHHHhcCCCCCCccccCCCCC---chhHHHHHHHHHhcccCCChHHHHHHHHHH
Q 011812           87 MTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNC  162 (477)
Q Consensus        87 m~kLYd~lF~~~~-~d~e~D~~L~~KI~~L~~~Itp~~L~I~~~~~~---e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~  162 (477)
                      |++||+++|.+.. .+...|..|.+||+.| +||+|+||||+.....   ..+|..|+.+|++|+.+++|+|||.||++|
T Consensus        78 ~~~ly~~~f~~~~~~~~~~D~~l~~~i~~l-~~i~~~~l~i~~~~~~~~~~~~~~~A~~~L~~i~~~~sP~dKl~~i~~~  156 (249)
T d2ot3a1          78 MTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKC  156 (249)
T ss_dssp             HHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCChhhHHHHHHHHHHHHHh-ccCCHHhcCCccccccchhhhHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence            9999999999864 4678899999999999 8999999999876543   357999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhccccc-CCchhhHHhhHHHHHHHHHhCC
Q 011812          163 CKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL-VGEAAYFFTNMLSAESFISNID  241 (477)
Q Consensus       163 ~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L-~GE~gYyLTtLeaAv~FI~~ld  241 (477)
                      |+.|++++..    ..+.++|||||||+||||||||+||+|+|||+||++|++++++ .||.|||||||+|||+||++++
T Consensus       157 ~~~I~~~~~~----~~~~~~~ADd~LP~liyviika~~~~l~S~i~yI~~F~~~~~l~~gE~~Y~lt~l~aAv~fI~~ld  232 (249)
T d2ot3a1         157 SKHIFNAIKI----TKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD  232 (249)
T ss_dssp             HHHHHHHHHH----HHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHh----hcCCCCChhHHHHHHHHHHHHcChhhHHHHHHHHHHHhChhhccCcHHHHHHHHHHHHHHHHHhCC
Confidence            9999998763    2356799999999999999999999999999999999998875 7999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHH
Q 011812          242 AQALSMEESEFERNME  257 (477)
Q Consensus       242 ~~sLsi~~eeF~~~m~  257 (477)
                      .++|+|+++||+++|.
T Consensus       233 ~~~L~i~~~~f~~~~~  248 (249)
T d2ot3a1         233 AQSLNLSQEDFDRYMS  248 (249)
T ss_dssp             TGGGTCCHHHHHHHHT
T ss_pred             HhhCCCCHHHHHhhcC
Confidence            9999999999999985