Citrus Sinensis ID: 011823

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
MAYREKLKNASGFWLLRVLFLFYAFVAATTAAQQRQPQRHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFPRLGESSPPSGFNKLY
cccHHHccccccEEEHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHccccccccEEEEEccccccccccHHHHcccccccccccccccccccEEEEccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
cccHHHEcccccEEEEEHHHHHHHHccHHHHHccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHcccEEEEEEEEEEEEEEccEEEEEcHHHHHHHcHHHHHcccccccccccccHccccEEEEcccHHHHHHHHHHHcccccccccccccHHHHHHHcHHccccccccccccccccccccccEEEHHHHHHHHcccccccccccEEEEEcccccccccEEccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
MAYREKLKNASGFWLLRVLFLFYAFVAATTaaqqrqpqrhKNAYATMmymgtprdyEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVenlnnpykdqanFDRRFKLTLNKLYAWnlvdydrvvmldsdnlflektdELFQCGqfcavfinpcifhtglfvlqpseTVFKDMIHELetgrenpdgadqgfiasyfpdlldkpmfhpslngtkleghyrlplgyqmdASYYYLRLrwsvpcgpnsvitfpgapwlkpwywwswpvlplgieWHKHRlqtlgysaeMTMVIIQAVIYLGMIAVtrlakpnmpklcyrrsdksISIIQTGLKLVAVWSILASYimpfflvpstlhpllawplyflgSFALSTIAInsfflpilpvlapWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEreiffprlgessppsgfnkly
mayreklknasgfwLLRVLFLFYAFVAATtaaqqrqpqrhkNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALeqedgakvvrvenlnnpykdqanfdrRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETgrenpdgadqGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREiffprlgessppsgfnkly
MAYREKLKNASGFWllrvlflfyafvaattaaqqrqPQRHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFPRLGESSPPSGFNKLY
*********ASGFWLLRVLFLFYAFVAATTAA********KNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELE*********DQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFPR**************
********NASGFWLLRVLFLFYA*******************YATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFP**********FNKLY
********NASGFWLLRVLFLFYAFVAATT*********HKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFPRLGESSPPSGFNKLY
*AYREKLKNASGFWLLRVLFLFYAFVAATTAAQQRQPQRHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFPRLG************
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYREKLKNASGFWLLRVLFLFYAFVAATTAAQQRQPQRHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIFFPRLGESSPPSGFNKLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query476 2.2.26 [Sep-21-2011]
F4JMI5494 Putative glucuronosyltran yes no 0.928 0.894 0.738 0.0
Q8VZP6497 Putative glucuronosyltran no no 0.930 0.891 0.729 0.0
Q8GWB7537 Putative glucuronosyltran no no 0.514 0.456 0.323 9e-29
F4HZC3566 Putative UDP-glucuronate: no no 0.228 0.192 0.339 2e-12
O15488501 Glycogenin-2 OS=Homo sapi no no 0.294 0.279 0.337 1e-11
Q9FZ37557 Putative UDP-glucuronate: no no 0.348 0.298 0.259 5e-11
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.355 0.283 0.247 1e-10
O08730333 Glycogenin-1 OS=Rattus no yes no 0.308 0.441 0.313 2e-09
Q9R062333 Glycogenin-1 OS=Mus muscu yes no 0.191 0.273 0.351 2e-09
Q9LSB1659 UDP-glucuronate:xylan alp no no 0.336 0.242 0.24 1e-08
>sp|F4JMI5|GUX7_ARATH Putative glucuronosyltransferase PGSIP7 OS=Arabidopsis thaliana GN=PGSIP7 PE=3 SV=1 Back     alignment and function desciption
 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/444 (73%), Positives = 378/444 (85%), Gaps = 2/444 (0%)

Query: 34  QRQPQRHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQA 93
           QR+P+ HKNAYATMMYMGTPRDYEFYVATRV+IRSL  LHVDADIVVIASLDVP+ W+ A
Sbjct: 52  QRRPE-HKNAYATMMYMGTPRDYEFYVATRVLIRSLKSLHVDADIVVIASLDVPINWIHA 110

Query: 94  LEQEDGAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKT 153
           LE+EDGAKVVRVENL NPYK Q NFD RFKL+LNKLYAW+L DYDRVVMLD DNLFL+ T
Sbjct: 111 LEEEDGAKVVRVENLENPYKKQTNFDNRFKLSLNKLYAWSLSDYDRVVMLDVDNLFLKNT 170

Query: 154 DELFQCGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFP 213
           DELFQCGQFCAVFINPCIFHTGLFVLQPS  VF+DM+HELE  R+NPDGADQGF+ SYF 
Sbjct: 171 DELFQCGQFCAVFINPCIFHTGLFVLQPSMEVFRDMLHELEVKRDNPDGADQGFLVSYFS 230

Query: 214 DLLDKPMFHPS-LNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLK 272
           DLL++P+F P   N T L+GH+RLPLGYQMDASYYYL+LRW+VPCGPNSVITFPGA WLK
Sbjct: 231 DLLNQPLFRPPPDNRTALKGHFRLPLGYQMDASYYYLKLRWNVPCGPNSVITFPGAVWLK 290

Query: 273 PWYWWSWPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYR 332
           PWYWWSWPVLPLG+ WH  R  T+ YSAEM  V+ QAV YLG+I VTRLA+PNM KLCYR
Sbjct: 291 PWYWWSWPVLPLGLSWHHQRRYTISYSAEMPWVLTQAVFYLGIILVTRLARPNMTKLCYR 350

Query: 333 RSDKSISIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSF 392
           RSDK++S+IQT  K VA+  IL++YI+PFF++P T+HPL+ W LY  GSFALSTI IN+F
Sbjct: 351 RSDKNLSMIQTAFKFVALLFILSAYIIPFFIIPQTIHPLIGWSLYLTGSFALSTIPINAF 410

Query: 393 FLPILPVLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQV 452
            LPILPV+ PWL IFG+LLVMA+P Y +GVVRAL+VF YAFC AP +WVS  K+ S LQ+
Sbjct: 411 LLPILPVITPWLGIFGTLLVMAFPSYPDGVVRALSVFGYAFCCAPFLWVSFVKITSHLQI 470

Query: 453 SLEREIFFPRLGESSPPSGFNKLY 476
            +++E+ FPRLGES   SG +KLY
Sbjct: 471 MIDKEVLFPRLGESGVTSGLSKLY 494

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8VZP6|GUX8_ARATH Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function description
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|O15488|GLYG2_HUMAN Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description
>sp|O08730|GLYG_RAT Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=4 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
255576054483 glucosyltransferase, putative [Ricinus c 0.920 0.906 0.803 0.0
356514292477 PREDICTED: uncharacterized protein LOC10 0.922 0.920 0.763 0.0
357476855472 Glycogenin-2 [Medicago truncatula] gi|35 0.920 0.927 0.753 0.0
356565353476 PREDICTED: uncharacterized protein LOC10 0.922 0.922 0.749 0.0
356540516472 PREDICTED: uncharacterized protein LOC10 0.918 0.925 0.746 0.0
357482041474 (RAP Annotation release2) Glycosyl trans 0.947 0.951 0.711 0.0
240255946494 GT8-glycogenin domain-containing protein 0.928 0.894 0.738 0.0
297827053495 hypothetical protein ARALYDRAFT_482539 [ 0.930 0.894 0.734 0.0
42569649497 nucleotide-diphospho-sugar transferase d 0.930 0.891 0.729 0.0
147812147430 hypothetical protein VITISV_009308 [Viti 0.876 0.969 0.744 0.0
>gi|255576054|ref|XP_002528922.1| glucosyltransferase, putative [Ricinus communis] gi|223531624|gb|EEF33451.1| glucosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/438 (80%), Positives = 405/438 (92%)

Query: 39  RHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQED 98
           RH+NAYATMMYMGTPRDYEFYVATRV+IRSL +LHVDAD+VVIAS+DVPLRW+ ALEQED
Sbjct: 46  RHRNAYATMMYMGTPRDYEFYVATRVLIRSLSKLHVDADLVVIASIDVPLRWIHALEQED 105

Query: 99  GAKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
           GA+VVRVEN+NNPYK+Q +FDRRFKLTLNKLYAW+LVDYDRVVMLD+DNLFL KTDELFQ
Sbjct: 106 GARVVRVENVNNPYKNQPHFDRRFKLTLNKLYAWSLVDYDRVVMLDADNLFLRKTDELFQ 165

Query: 159 CGQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDK 218
           CGQFCAVFINPCIFHTGLFVLQPS+ VFKDM+H+LE G++NPDGADQGFI  YFPDLLDK
Sbjct: 166 CGQFCAVFINPCIFHTGLFVLQPSKLVFKDMLHQLEIGKDNPDGADQGFIGGYFPDLLDK 225

Query: 219 PMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWS 278
           PMF+P  NGT LEG YRLPLGYQMDA+YYYLRLRW+VPCGPNSVITFPGAPWLKPWYWWS
Sbjct: 226 PMFYPPANGTALEGSYRLPLGYQMDATYYYLRLRWNVPCGPNSVITFPGAPWLKPWYWWS 285

Query: 279 WPVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSI 338
           WPVLPLG++WH+ RLQ+LGY+AE+ MV IQ++IY+G+IAVTRLA+PN+ KLCYRR+DK+I
Sbjct: 286 WPVLPLGLQWHEQRLQSLGYAAELPMVFIQSIIYIGIIAVTRLARPNISKLCYRRTDKNI 345

Query: 339 SIIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILP 398
           S+IQ GLKL+A+WSILA+Y++PFF++P T+HPLL W LY LGSFAL +IAIN+F LP++ 
Sbjct: 346 SLIQAGLKLIAIWSILAAYVLPFFIIPCTIHPLLGWALYLLGSFALCSIAINAFMLPMVH 405

Query: 399 VLAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREI 458
           VL PWL IFG LLVMA+PWY +GVVRAL++F YAFC AP  WVSL KVM+CLQVSLERE+
Sbjct: 406 VLTPWLGIFGVLLVMAFPWYPDGVVRALSIFGYAFCCAPFAWVSLVKVMACLQVSLEREV 465

Query: 459 FFPRLGESSPPSGFNKLY 476
           FFPRLGESSPPSGFNKLY
Sbjct: 466 FFPRLGESSPPSGFNKLY 483

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356514292|ref|XP_003525840.1| PREDICTED: uncharacterized protein LOC100794824 [Glycine max] Back     alignment and taxonomy information
>gi|357476855|ref|XP_003608713.1| Glycogenin-2 [Medicago truncatula] gi|355509768|gb|AES90910.1| Glycogenin-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356565353|ref|XP_003550906.1| PREDICTED: uncharacterized protein LOC100795808 [Glycine max] Back     alignment and taxonomy information
>gi|356540516|ref|XP_003538734.1| PREDICTED: uncharacterized protein LOC100809500 [Glycine max] Back     alignment and taxonomy information
>gi|357482041|ref|XP_003611306.1| (RAP Annotation release2) Glycosyl transferase [Medicago truncatula] gi|355512641|gb|AES94264.1| (RAP Annotation release2) Glycosyl transferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|240255946|ref|NP_193393.4| GT8-glycogenin domain-containing protein [Arabidopsis thaliana] gi|385178636|sp|F4JMI5.1|GUX7_ARATH RecName: Full=Putative glucuronosyltransferase PGSIP7; AltName: Full=Glycogenin-like protein 7; AltName: Full=Plant glycogenin-like starch initiation protein 7 gi|332658375|gb|AEE83775.1| GT8-glycogenin domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827053|ref|XP_002881409.1| hypothetical protein ARALYDRAFT_482539 [Arabidopsis lyrata subsp. lyrata] gi|297327248|gb|EFH57668.1| hypothetical protein ARALYDRAFT_482539 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42569649|ref|NP_565817.2| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] gi|75161680|sp|Q8VZP6.1|GUX8_ARATH RecName: Full=Putative glucuronosyltransferase PGSIP8; AltName: Full=Glycogenin-like protein 8; AltName: Full=Plant glycogenin-like starch initiation protein 8 gi|17380986|gb|AAL36305.1| unknown protein [Arabidopsis thaliana] gi|20465569|gb|AAM20267.1| putative glycogenin protein [Arabidopsis thaliana] gi|330254054|gb|AEC09148.1| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147812147|emb|CAN77033.1| hypothetical protein VITISV_009308 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
TAIR|locus:2058754497 PGSIP7 "plant glycogenin-like 0.918 0.879 0.736 1.2e-186
TAIR|locus:2130854494 PGSIP8 "AT4G16600" [Arabidopsi 0.918 0.884 0.742 2.8e-185
WB|WBGene00011684449 T10B10.8 [Caenorhabditis elega 0.684 0.726 0.275 6.2e-30
TAIR|locus:2146173537 PGSIP6 "plant glycogenin-like 0.508 0.450 0.334 5e-29
WB|WBGene00012020300 gyg-2 [Caenorhabditis elegans 0.336 0.533 0.309 2.4e-12
WB|WBGene00006863429 gyg-1 [Caenorhabditis elegans 0.407 0.452 0.301 2e-11
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.228 0.192 0.339 2.7e-11
TAIR|locus:2011045557 PGSIP4 "AT1G54940" [Arabidopsi 0.348 0.298 0.259 1.2e-10
UNIPROTKB|O15488501 GYG2 "Glycogenin-2" [Homo sapi 0.283 0.269 0.348 1.3e-10
RGD|621785333 Gyg1 "glycogenin 1" [Rattus no 0.420 0.600 0.283 2.4e-09
TAIR|locus:2058754 PGSIP7 "plant glycogenin-like starch initiation protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
 Identities = 322/437 (73%), Positives = 377/437 (86%)

Query:    40 HKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDG 99
             HKNAYATMMYMGTPRDYEFYVATRV+IRSL  LHV+AD+VVIASLDVPLRWVQ LE+EDG
Sbjct:    61 HKNAYATMMYMGTPRDYEFYVATRVLIRSLRSLHVEADLVVIASLDVPLRWVQTLEEEDG 120

Query:   100 AKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQC 159
             AKVVRVEN++NPY+ Q NF+ RFKLTLNKLYAW L DYDRVVMLD+DNLFL+K DELFQC
Sbjct:   121 AKVVRVENVDNPYRRQTNFNSRFKLTLNKLYAWALSDYDRVVMLDADNLFLKKADELFQC 180

Query:   160 GQFCAVFINPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKP 219
             G+FCAVFINPCIFHTGLFVLQPS  VFKDM+HEL+ GR+NPDGADQGF+ SYF DLLD+P
Sbjct:   181 GRFCAVFINPCIFHTGLFVLQPSVEVFKDMLHELQVGRKNPDGADQGFLVSYFSDLLDQP 240

Query:   220 MFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWSW 279
             +F P  NG+ L GH RLPLGYQMDASY+YL+LRW++PCGPNSVITFPGA WLKPWYWWSW
Sbjct:   241 LFSPPSNGSVLNGHLRLPLGYQMDASYFYLKLRWNIPCGPNSVITFPGAVWLKPWYWWSW 300

Query:   280 PVLPLGIEWHKHRLQTLGYSAEMTMVIIQAVIYLGMIAVTRLAKPNMPKLCYRRSDKSIS 339
             PVLPLG  WH+ R  T+GYSAEM +VIIQA+ YLG+I VTRLA+PN+ KLCYRRSD++++
Sbjct:   301 PVLPLGFSWHEQRRATIGYSAEMPLVIIQAMFYLGIIVVTRLARPNITKLCYRRSDRNLT 360

Query:   340 IIQTGLKLVAVWSILASYIMPFFLVPSTLHPLLAWPLYFLGSFALSTIAINSFFLPILPV 399
              IQ G KL+A+ S++A+YI PFF +P T+HPL+ W LY + SFALS+I+IN+  LP LPV
Sbjct:   361 TIQAGFKLIALLSVVAAYIFPFFTIPHTIHPLIGWSLYLMASFALSSISINTLLLPTLPV 420

Query:   400 LAPWLLIFGSLLVMAYPWYSNGVVRALAVFFYAFCSAPIVWVSLTKVMSCLQVSLEREIF 459
             L PWL I G+LLVMA+PWY +GVVRAL+VF YAFC AP VWVS  K+ S LQV +E+E+ 
Sbjct:   421 LTPWLGILGTLLVMAFPWYPDGVVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVL 480

Query:   460 FPRLGESSPPSGFNKLY 476
             FPRLG+S   SGF+KLY
Sbjct:   481 FPRLGDSGVTSGFSKLY 497
GO:0005739 "mitochondrion" evidence=ISM
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
TAIR|locus:2130854 PGSIP8 "AT4G16600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00011684 T10B10.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00006863 gyg-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011045 PGSIP4 "AT1G54940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O15488 GYG2 "Glycogenin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621785 Gyg1 "glycogenin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4JMI5GUX7_ARATH2, ., 4, ., 1, ., -0.73870.92850.8947yesno
Q8VZP6GUX8_ARATH2, ., 4, ., 1, ., -0.72970.93060.8913nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 5e-65
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-09
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 4e-09
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 5e-06
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 2e-05
PLN00176333 PLN00176, PLN00176, galactinol synthase 2e-04
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 5e-04
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  209 bits (534), Expect = 5e-65
 Identities = 81/258 (31%), Positives = 110/258 (42%), Gaps = 34/258 (13%)

Query: 42  NAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAK 101
            AY T++        ++     V+  SL ++    D+VV+ +  V     +ALE+  G  
Sbjct: 1   EAYVTLLTND-----DYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEV-GWI 54

Query: 102 VVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQC-G 160
           V  VE ++ P         RFK T  KL  WNL +YD+VV LD+D L L   DELF   G
Sbjct: 55  VREVEPIDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPG 114

Query: 161 QFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDK 218
           +F A      P +F++G+FVL+PSE  F D++  L+    + DG DQG + SYF D    
Sbjct: 115 EFAAAPDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTP-SFDGGDQGLLNSYFSDRG-- 171

Query: 219 PMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNSVITFPGAPWLKPWYWWS 278
                           RLP  Y       YL            V+ F G    KPW WW 
Sbjct: 172 -------------IWKRLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGGD--KPWSWWR 216

Query: 279 WP-------VLPLGIEWH 289
            P          L   W 
Sbjct: 217 DPETKEKDDYNELHQWWW 234

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 476
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.98
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.97
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.97
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.96
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.96
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.96
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.91
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.89
PLN02718603 Probable galacturonosyltransferase 99.86
PLN02523559 galacturonosyltransferase 99.86
PLN02867535 Probable galacturonosyltransferase 99.85
PLN02659534 Probable galacturonosyltransferase 99.83
PLN02870533 Probable galacturonosyltransferase 99.83
PLN02769629 Probable galacturonosyltransferase 99.81
PLN02742534 Probable galacturonosyltransferase 99.78
PLN02829639 Probable galacturonosyltransferase 99.77
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.76
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.68
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 98.52
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 98.09
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.0
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 96.58
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 91.77
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 91.35
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 91.18
PLN03181453 glycosyltransferase; Provisional 85.21
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-40  Score=339.44  Aligned_cols=237  Identities=23%  Similarity=0.368  Sum_probs=185.5

Q ss_pred             CCCCeEEEEEEeecCCCCccchHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhhCCCEEEEEeccCCccccccc
Q 011823           38 QRHKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQAN  117 (476)
Q Consensus        38 ~~~~~AYvTivy~~t~~dYeyl~ga~VL~~SL~~~ns~~dlvVlvt~~Is~e~~~~L~~~~g~~v~~V~~i~~p~~~~~~  117 (476)
                      ..+++||||++++  |+  +|+.|+.+|++||+++++++|++++++++++++++++|++ .|+++++|+.+..+..+...
T Consensus        19 ~~~~~AyVT~L~~--n~--~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~-~g~~V~~V~~i~~~~~~~~~   93 (333)
T PLN00176         19 KPAKRAYVTFLAG--NG--DYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVS-QGCIVREIEPVYPPENQTQF   93 (333)
T ss_pred             ccCceEEEEEEec--Cc--chHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHH-cCCEEEEecccCCccccccc
Confidence            3678999998863  44  4699999999999999999999999999999999999999 99999999887644432111


Q ss_pred             ccchhhhhhHhhhhhhccCcCeEEEEcCCeecccCchhhhcCC--Ceeeeec--------------------------C-
Q 011823          118 FDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCG--QFCAVFI--------------------------N-  168 (476)
Q Consensus       118 ~~~r~~~ty~KL~i~~L~eydRVLYLDaD~LVl~nLdeLFd~~--~~~Aa~d--------------------------~-  168 (476)
                      ...++..+|+||++|++++||||||||||++|++||||||+++  .++|+.+                          + 
T Consensus        94 ~~~~~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp  173 (333)
T PLN00176         94 AMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWP  173 (333)
T ss_pred             ccchhhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccch
Confidence            2345678999999999999999999999999999999999986  3555542                          0 


Q ss_pred             -------CCCccceEEEEeCCHHHHHHHHHHHHhCCCCCCCCchhHHhcccCCCCCCCccCCCCCCCCCCCceeCCcccc
Q 011823          169 -------PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQ  241 (476)
Q Consensus       169 -------P~yFNSGVmvInps~~~f~~lle~l~~~~~~~~~~DQDiLN~~f~d~~~~~lf~p~~~~~~ld~~~rLp~~YN  241 (476)
                             +.||||||||+||+.++++++++.+... ....++|||+||.+|.+                 .+.+||.+||
T Consensus       174 ~~~g~~~~~yFNSGVlvinps~~~~~~ll~~l~~~-~~~~f~DQD~LN~~F~~-----------------~~~~Lp~~YN  235 (333)
T PLN00176        174 AELGPPPPLYFNAGMFVFEPSLSTYEDLLETLKIT-PPTPFAEQDFLNMFFRD-----------------IYKPIPPVYN  235 (333)
T ss_pred             hhccCCCCCeEEeEEEEEEcCHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHcC-----------------cEEECCchhc
Confidence                   1499999999999999999999987653 34578999999999998                 6999999999


Q ss_pred             ccchhcc-cccccCCCCCCCeEEEeeCCCCCCCCcccccC-c------ccchhhhHHHH-HHhcCCCc
Q 011823          242 MDASYYY-LRLRWSVPCGPNSVITFPGAPWLKPWYWWSWP-V------LPLGIEWHKHR-LQTLGYSA  300 (476)
Q Consensus       242 ~~~~~~y-l~~~w~~~~~~~~IIHFtg~p~~KPW~~ws~p-~------~~l~~~W~~~r-~~t~~~~~  300 (476)
                      ++..+.+ .+..|+  .++++||||+|.. .|||+.-... .      ..+...|.+.. .+++.|..
T Consensus       236 ~~~~~~~~~~~~~~--~~~vkIIHY~~~~-~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~~  300 (333)
T PLN00176        236 LVLAMLWRHPENVE--LDKVKVVHYCAAG-SKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYKN  300 (333)
T ss_pred             CchhhhhhChhhcc--cCCcEEEEeeCCC-CCCCCCCCcccCCChHHHHHHHHHHHHHhccccccccc
Confidence            9976443 233343  4578999999731 6999854321 1      22334566644 45555544

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 6e-10
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 6e-10
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 6e-10
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 1e-09
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 1e-09
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 1e-09
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 1e-09
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 1e-09
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 3e-09
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 5e-09
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 5e-09
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 7e-09
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 8e-09
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 8e-09
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure 
Iteration: 1

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 64  VMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFK 123
           V+  SL +      +VV+A+  V     + LE     +V+ V+ L++         +R +
Sbjct: 22  VLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV-FDEVIMVDVLDSGDSAHLTLMKRPE 80
Query: 124 L--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVL 179
           L  TL KL+ W+L  Y + V +D+D L L   D+LF   +  A      P  F++G+FV 
Sbjct: 81  LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVY 140
Query: 180 QPSETVFKDMIHELETGRENPDGADQGFIASYF 212
           QPS   +  ++H L + + + DG DQG + ++F
Sbjct: 141 QPSVETYNQLLH-LASEQGSFDGGDQGILNTFF 172
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 6e-34
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 2e-33
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-04
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  129 bits (325), Expect = 6e-34
 Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 26/245 (10%)

Query: 41  KNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGA 100
             A+ T+       +  +     V+  SL +      + V+ +  V     +ALE     
Sbjct: 3   DQAFVTLTT-----NDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIV-FD 56

Query: 101 KVVRVENLNNPYKDQANFDRR--FKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
           +V+ V+ L++         +R    +TL KL+ W+L  Y + V +D+D L L   D+LF+
Sbjct: 57  EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE 116

Query: 159 CGQFCAVF--INPCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLL 216
             +  A      P  F++G+FV QPS   +  ++H     + + DG DQG + ++F    
Sbjct: 117 REELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASE-QGSFDGGDQGLLNTFFNSWA 175

Query: 217 DKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPN-SVITFPGAPWLKPWY 275
              +               LP  Y + +   Y  L      G N  V+ F G    KPW 
Sbjct: 176 TTDIRK------------HLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQT--KPWN 221

Query: 276 WWSWP 280
           +    
Sbjct: 222 YTYDT 226
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.98
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.97
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=4.7e-41  Score=332.62  Aligned_cols=217  Identities=26%  Similarity=0.435  Sum_probs=179.7

Q ss_pred             CCeEEEEEEeecCCCCccchHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhhCCCEEEEEeccCCccccccc--
Q 011823           40 HKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQAN--  117 (476)
Q Consensus        40 ~~~AYvTivy~~t~~dYeyl~ga~VL~~SL~~~ns~~dlvVlvt~~Is~e~~~~L~~~~g~~v~~V~~i~~p~~~~~~--  117 (476)
                      +++||||++   +|+  +|+.|+.|+++||++++++++++++++++++++.+++|++ .|.+++.|+.++.+......  
T Consensus         3 ~~~AyvTl~---td~--~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~-~~~~vi~V~~l~~~~~~~~~~~   76 (263)
T 3u2u_A            3 TDQAFVTLT---TND--AYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLET-VFDEVIMVDVLDSGDSAHLTLM   76 (263)
T ss_dssp             TTEEEEEEE---SSH--HHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHH-HSSEEEECCCCCCCCHHHHHHT
T ss_pred             cceEEEEEE---ECH--HHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHH-cCCeEEEeeecCCcchhhhhhh
Confidence            589999998   444  5699999999999999999999999999999999999999 89999999877654321111  


Q ss_pred             ccchhhhhhHhhhhhhccCcCeEEEEcCCeecccCchhhhcCCCeeeeec--CCCCccceEEEEeCCHHHHHHHHHHHHh
Q 011823          118 FDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFI--NPCIFHTGLFVLQPSETVFKDMIHELET  195 (476)
Q Consensus       118 ~~~r~~~ty~KL~i~~L~eydRVLYLDaD~LVl~nLdeLFd~~~~~Aa~d--~P~yFNSGVmvInps~~~f~~lle~l~~  195 (476)
                      ...++..+|+|+.+|++++||||||||+|++|++|+||||+++.++|++|  +|+||||||||+||+.++++++++.+.+
T Consensus        77 ~rp~~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~  156 (263)
T 3u2u_A           77 KRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASE  156 (263)
T ss_dssp             TCTTGGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHh
Confidence            12346789999999999999999999999999999999999999999987  5799999999999999999999998865


Q ss_pred             CCCCCCCCchhHHhcccCCCCCCCccCCCCCCCCCCCceeCCccccccchhccc-ccccCCCCCCCeEEEeeCCCCCCCC
Q 011823          196 GRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYL-RLRWSVPCGPNSVITFPGAPWLKPW  274 (476)
Q Consensus       196 ~~~~~~~~DQDiLN~~f~d~~~~~lf~p~~~~~~ld~~~rLp~~YN~~~~~~yl-~~~w~~~~~~~~IIHFtg~p~~KPW  274 (476)
                       .+++.++|||+||.+|.+|..+            +.+++||.+||++....|. ...+....++++||||+|.  .|||
T Consensus       157 -~~~~~~~DQd~LN~~f~~w~~~------------~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~--~KPW  221 (263)
T 3u2u_A          157 -QGSFDGGDQGILNTFFSSWATT------------DIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGR--VKPW  221 (263)
T ss_dssp             -HCCTTSSHHHHHHHHTTTTTTS------------CGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSS--SCGG
T ss_pred             -cCCCCcccHHHHHHHhcccccc------------CeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCC--CcCC
Confidence             3568899999999999985321            2578999999999763321 1122111356799999998  7999


Q ss_pred             ccc
Q 011823          275 YWW  277 (476)
Q Consensus       275 ~~w  277 (476)
                      +..
T Consensus       222 ~~~  224 (263)
T 3u2u_A          222 NYT  224 (263)
T ss_dssp             GSE
T ss_pred             CCC
Confidence            964
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 476
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 3e-22
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-04
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 93.8 bits (232), Expect = 3e-22
 Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 24/241 (9%)

Query: 41  KNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQE-DG 99
             A+ T+       +  +     V+  SL +      + V+ +  V     +ALE   D 
Sbjct: 3   DQAFVTLTT-----NDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 57

Query: 100 AKVVRVENLNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQC 159
              V + +  +             +TL KL+ W+L  Y + V +D+D L L   D+LF+ 
Sbjct: 58  VITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFER 117

Query: 160 GQFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLLD 217
            +  A      P  F++G+FV QPS   +  ++H     + + DG DQG + ++F     
Sbjct: 118 EELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASE-QGSFDGGDQGLLNTFFNSWAT 176

Query: 218 KPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPN-SVITFPGAPWLKPWYW 276
             +               LP  Y + +   Y  L      G N  V+ F G    KPW +
Sbjct: 177 TDIRK------------HLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQT--KPWNY 222

Query: 277 W 277
            
Sbjct: 223 T 223
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.98
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 84.72
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 83.28
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.9e-37  Score=300.38  Aligned_cols=217  Identities=25%  Similarity=0.422  Sum_probs=175.8

Q ss_pred             CCeEEEEEEeecCCCCccchHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhhCCCEEEEEeccCCccccccc--
Q 011823           40 HKNAYATMMYMGTPRDYEFYVATRVMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQAN--  117 (476)
Q Consensus        40 ~~~AYvTivy~~t~~dYeyl~ga~VL~~SL~~~ns~~dlvVlvt~~Is~e~~~~L~~~~g~~v~~V~~i~~p~~~~~~--  117 (476)
                      +..||||++   ||+  +|+.|++|+++||++++++++++++++++++++.+++|++ .+.+++.++.++.+......  
T Consensus         2 ~~~A~vt~~---t~d--~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~-~~~~~~~v~~i~~~~~~~~~~~   75 (263)
T d1ll2a_           2 TDQAFVTLT---TND--AYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEI-VFDEVITVDILDSGDSAHLTLM   75 (263)
T ss_dssp             CSEEEEEEE---SSH--HHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHH-HCSEEEECCTTSTTSTTHHHHH
T ss_pred             CccEEEEEE---eCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-hCCcceeEEeecCcchhhhhhh
Confidence            578999999   444  5699999999999999999999999999999999999999 78999888877654332111  


Q ss_pred             ccchhhhhhHhhhhhhccCcCeEEEEcCCeecccCchhhhcCCCeeeeec--CCCCccceEEEEeCCHHHHHHHHHHHHh
Q 011823          118 FDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFI--NPCIFHTGLFVLQPSETVFKDMIHELET  195 (476)
Q Consensus       118 ~~~r~~~ty~KL~i~~L~eydRVLYLDaD~LVl~nLdeLFd~~~~~Aa~d--~P~yFNSGVmvInps~~~f~~lle~l~~  195 (476)
                      ...++.++|+||++|++.+||||||||||+||++|||+||+.+..+|+.+  .+.|||||||+++|+.++++++.+.+..
T Consensus        76 ~~~~~~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~  155 (263)
T d1ll2a_          76 KRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASE  155 (263)
T ss_dssp             HCGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHh
Confidence            12345789999999999999999999999999999999999998888875  4689999999999999999999988765


Q ss_pred             CCCCCCCCchhHHhcccCCCCCCCccCCCCCCCCCCCceeCCccccccchhcccc-cccCCCCCCCeEEEeeCCCCCCCC
Q 011823          196 GRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLR-LRWSVPCGPNSVITFPGAPWLKPW  274 (476)
Q Consensus       196 ~~~~~~~~DQDiLN~~f~d~~~~~lf~p~~~~~~ld~~~rLp~~YN~~~~~~yl~-~~w~~~~~~~~IIHFtg~p~~KPW  274 (476)
                       .+++.++||+++|..+.+....            ..+.+||..||......+.. ..+.....+++||||+|.  .|||
T Consensus       156 -~~~~~~~dq~~ln~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~g~--~KPW  220 (263)
T d1ll2a_         156 -QGSFDGGDQGLLNTFFNSWATT------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQ--TKPW  220 (263)
T ss_dssp             -TCCTTSSHHHHHHHHTTTTTTS------------CGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSS--CCGG
T ss_pred             -hCCCChhhhhHHHHHHHhhhcc------------CcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeCCC--CCCC
Confidence             4567789999999999873211            25788999999886533211 111112345799999998  7999


Q ss_pred             ccc
Q 011823          275 YWW  277 (476)
Q Consensus       275 ~~w  277 (476)
                      +..
T Consensus       221 ~~~  223 (263)
T d1ll2a_         221 NYT  223 (263)
T ss_dssp             GSC
T ss_pred             CCC
Confidence            864
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure